-
1
-
-
84886718431
-
Multifactorial diversity sustains microbial community stability
-
Erkus, O. et al. Multifactorial diversity sustains microbial community stability. ISME J. 7, 2126-2136 (2013).
-
(2013)
ISME J
, vol.7
, pp. 2126-2136
-
-
Erkus, O.1
-
2
-
-
0003462928
-
-
Elsevier Academic Press
-
Fox, P. F., McSweeney, P. L. H., Cogan, T. M. & Guinee, T. P. Cheese: Chemistry, Physics, Microbiology. (Elsevier Academic Press, 2004).
-
(2004)
Cheese: Chemistry Physics Microbiology
-
-
Fox, P.F.1
McSweeney, P.L.H.2
Cogan, T.M.3
Guinee, T.P.4
-
3
-
-
84896385318
-
Traditional cheeses: Rich and diverse microbiota with associated benefits
-
Montel, M.-C. et al. Traditional cheeses: rich and diverse microbiota with associated benefits. Int. J. Food Microbiol. 177, 136-154 (2014).
-
(2014)
Int. J. Food Microbiol
, vol.177
, pp. 136-154
-
-
Montel, M.-C.1
-
4
-
-
84896098847
-
A selected core microbiome drives the early stages of three popular Italian cheese manufactures
-
De Filippis, F., La Storia, A., Stellato, G., Gatti, M. & Ercolini, D. A selected core microbiome drives the early stages of three popular Italian cheese manufactures. PLoS ONE 9(2), e89680 (2014).
-
(2014)
PLoS ONE
, vol.9
, Issue.2
-
-
De Filippis, F.1
La Storia, A.2
Stellato, G.3
Gatti, M.4
Ercolini, D.5
-
5
-
-
43549104205
-
Microbial diversity in natural whey cultures used for the production of Caciocavallo Silano PDO Cheese
-
Ercolini, D., Frisso, G., Mauriello, G., Salvatore, F. & Coppola, S. Microbial diversity in natural whey cultures used for the production of Caciocavallo Silano PDO Cheese. Int. J. Food Microbiol. 124, 164-170 (2008).
-
(2008)
Int. J. Food Microbiol
, vol.124
, pp. 164-170
-
-
Ercolini, D.1
Frisso, G.2
Mauriello, G.3
Salvatore, F.4
Coppola, S.5
-
6
-
-
0038661169
-
Survey of lactic acid bacteria during the ripening of Caciocavallo cheese produced in Molise
-
Coppola, R., Succi, M., Sorrentino, E., Iorizzo, M. & Grazia, L. Survey of lactic acid bacteria during the ripening of Caciocavallo cheese produced in Molise. Lait 83, 211-222 (2003).
-
(2003)
Lait
, vol.83
, pp. 211-222
-
-
Coppola, R.1
Succi, M.2
Sorrentino, E.3
Iorizzo, M.4
Grazia, L.5
-
7
-
-
84907021031
-
Microbial ecology dynamics reveal a succession in the core microbiota involved in the ripening of pasta filata Caciocavallo Pugliese cheese
-
De Pasquale, I., Di Cagno, R., Buchin, S., De Angelis, M. & Gobbetti, M. Microbial ecology dynamics reveal a succession in the core microbiota involved in the ripening of pasta filata Caciocavallo Pugliese cheese. Appl. Environ. Microbiol. 80, 6243-6255 (2014).
-
(2014)
Appl. Environ. Microbiol
, vol.80
, pp. 6243-6255
-
-
De Pasquale, I.1
Di Cagno, R.2
Buchin, S.3
De Angelis, M.4
Gobbetti, M.5
-
8
-
-
27744445669
-
Assessing the proteolytic and lipolytic activities of single strains of mesophilic lactobacilli as adjunct cultures using a Caciotta cheese model system
-
Di Cagno, R., Quinto, M., Corsetti, A., Minervini, F. & Gobbetti, M. Assessing the proteolytic and lipolytic activities of single strains of mesophilic lactobacilli as adjunct cultures using a Caciotta cheese model system. Int. Dairy J. 16, 119-130 (2006).
-
(2006)
Int. Dairy J
, vol.16
, pp. 119-130
-
-
Di Cagno, R.1
Quinto, M.2
Corsetti, A.3
Minervini, F.4
Gobbetti, M.5
-
9
-
-
84882870334
-
The effect of Lactobacillus buchneri and Lactobacillus parabuchneri on the eye formation of semi-hard cheese
-
Fröhlich-Wyder, M.-T., Guggisberg, D., Badertscher, R., Wechsler, D., Wittwer, A. & Irmler, S. The effect of Lactobacillus buchneri and Lactobacillus parabuchneri on the eye formation of semi-hard cheese. Int. Dairy J. 33, 120-128 (2013).
-
(2013)
Int. Dairy J
, vol.33
, pp. 120-128
-
-
Fröhlich-Wyder, M.-T.1
Guggisberg, D.2
Badertscher, R.3
Wechsler, D.4
Wittwer, A.5
Irmler, S.6
-
10
-
-
0036083735
-
Microbiological compositional, biochemical and textural characterisation of Caciocavallo Pugliese cheese during ripening
-
Gobbetti, M., Morea, M., Baruzzi, F., Corbo, M. R., Matarante, A. & Considine, T. Microbiological, compositional, biochemical and textural characterisation of Caciocavallo Pugliese cheese during ripening. Int. Dairy J. 12, 511-523 (2002).
-
(2002)
Int. Dairy J
, vol.12
, pp. 511-523
-
-
Gobbetti, M.1
Morea, M.2
Baruzzi, F.3
Corbo, M.R.4
Matarante, A.5
Considine, T.6
-
11
-
-
21744446402
-
Discrimination of commercial Caciocavallo cheeses on the basis of the diversity of lactic microflora and primary proteolysis
-
Piraino, P., Zotta, T., Ricciardi, A. & Parente, E. Discrimination of commercial Caciocavallo cheeses on the basis of the diversity of lactic microflora and primary proteolysis. Int. Dairy J. 15, 1138-1149 (2005).
-
(2005)
Int. Dairy J
, vol.15
, pp. 1138-1149
-
-
Piraino, P.1
Zotta, T.2
Ricciardi, A.3
Parente, E.4
-
12
-
-
0038515384
-
Relationships between flavoring capabilities, bacterial composition, and geographical origin of natural whey cultures used for traditional water-buffalo mozzarella cheese manufacture
-
Mauriello, G., Moio, L., Genovese, A. & Ercolini, D. Relationships between flavoring capabilities, bacterial composition, and geographical origin of natural whey cultures used for traditional water-buffalo mozzarella cheese manufacture. J. Dairy Sci. 86, 486-497 (2003).
-
(2003)
J. Dairy Sci
, vol.86
, pp. 486-497
-
-
Mauriello, G.1
Moio, L.2
Genovese, A.3
Ercolini, D.4
-
13
-
-
23944493804
-
Flavour formation by lactic acid bacteria and biochemical flavour profiling of cheese products
-
Smit, G., Smit, B. A. & Engels, W. J. Flavour formation by lactic acid bacteria and biochemical flavour profiling of cheese products. FEMS Microbiol. Rev. 29, 591-610 (2005).
-
(2005)
FEMS Microbiol. Rev
, vol.29
, pp. 591-610
-
-
Smit, G.1
Smit, B.A.2
Engels, W.J.3
-
14
-
-
84875860697
-
Nucleic acid-based approaches to investigate microbialrelated cheese quality defects
-
O'Sullivan, D. J., Giblin, L., McSweeney, P. L. H., Sheehan, J. J. & Cotter, P. D. Nucleic acid-based approaches to investigate microbialrelated cheese quality defects. Front. Microbiol. 4, 1 (2013).
-
(2013)
Front. Microbiol
, vol.4
, pp. 1
-
-
O'Sullivan, D.J.1
Giblin, L.2
McSweeney, P.L.H.3
Sheehan, J.J.4
Cotter, P.D.5
-
15
-
-
84922896314
-
Zooming into food-associated microbial consortia: A "cultural" evolution
-
Cocolin, L. & Ecolini, D. Zooming into food-associated microbial consortia: a "cultural" evolution. Curr. Opin. Food Sci. 2, 43-50 (2015).
-
(2015)
Curr. Opin. Food Sci
, vol.2
, pp. 43-50
-
-
Cocolin, L.1
Ecolini, D.2
-
16
-
-
84928911036
-
Overview of a surface-ripened cheese community functioning by meta-omics analyses
-
Dugat-Bony, E. et al. Overview of a surface-ripened cheese community functioning by meta-omics analyses. PLoS ONE 10(4), e0124360 (2015).
-
(2015)
PLoS ONE
, vol.10
, Issue.4
-
-
Dugat-Bony, E.1
-
17
-
-
84899116596
-
Metatranscriptome analysis of fungal strains Penicillium camemberti and Geotrichum candidum reveal cheese matrix breakdown and potential development of sensory properties of ripened Camemberttype cheese
-
Lessard, M.-H., Viel, C., Boyle, B., St-Gelais, D. & Labrie, S. Metatranscriptome analysis of fungal strains Penicillium camemberti and Geotrichum candidum reveal cheese matrix breakdown and potential development of sensory properties of ripened Camemberttype cheese. BMC Genomics 15, 235 (2014).
-
(2014)
BMC Genomics
, vol.15
, pp. 235
-
-
Lessard, M.-H.1
Viel, C.2
Boyle, B.3
St-Gelais, D.4
Labrie, S.5
-
18
-
-
84926433439
-
Fermented food as experimentally tractable microbial ecosystems
-
Wolfe, B. E. & Dutton, R. J. Fermented food as experimentally tractable microbial ecosystems. Cell 161, 49-55 (2015).
-
(2015)
Cell
, vol.161
, pp. 49-55
-
-
Wolfe, B.E.1
Dutton, R.J.2
-
19
-
-
84925379678
-
Temporal and spatial differences in microbial composition during the manufacture of a continental-type cheese
-
O'Sullivan, D. J., Cotter, P. D., O'Sullivan, O., Giblin, L., McSweeney, P. L. H. & Sheehan, J. J. Temporal and spatial differences in microbial composition during the manufacture of a continental-type cheese. Appl. Environ. Microbiol. 81, 2525-2533 (2015).
-
(2015)
Appl. Environ. Microbiol
, vol.81
, pp. 2525-2533
-
-
O'Sullivan, D.J.1
Cotter, P.D.2
O'Sullivan, O.3
Giblin, L.4
McSweeney, P.L.H.5
Sheehan, J.J.6
-
20
-
-
84904578387
-
Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity
-
Wolfe, B. E., Button, J. E., Santarelli, M. & Dutton, R. J. Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158, 422-433 (2014).
-
(2014)
Cell
, vol.158
, pp. 422-433
-
-
Wolfe, B.E.1
Button, J.E.2
Santarelli, M.3
Dutton, R.J.4
-
21
-
-
0030890402
-
Proteolytic enzymes of lactic acid bacteria
-
Law, J. & Haandrikman, A. Proteolytic enzymes of lactic acid bacteria. Int. Dairy J. 7, 1-11 (1997).
-
(1997)
Int. Dairy J
, vol.7
, pp. 1-11
-
-
Law, J.1
Haandrikman, A.2
-
22
-
-
77249139342
-
The proteolytic system of lactic acid bacteria revisited: A genomic comparison
-
Liu, M., Bayjanov, J. R., Renckens, B., Nauta, A. & Siezen, R. J. The proteolytic system of lactic acid bacteria revisited: a genomic comparison. BMC Genomics 11, 36 (2010).
-
(2010)
BMC Genomics
, vol.11
, pp. 36
-
-
Liu, M.1
Bayjanov, J.R.2
Renckens, B.3
Nauta, A.4
Siezen, R.J.5
-
23
-
-
33745945472
-
Proteolytic systems of lactic acid bacteria
-
Savijoki, K., Ingmer, H. & Varmanen, P. Proteolytic systems of lactic acid bacteria. Appl. Microbiol. Biotechnol. 71, 394-406 (2006).
-
(2006)
Appl. Microbiol. Biotechnol
, vol.71
, pp. 394-406
-
-
Savijoki, K.1
Ingmer, H.2
Varmanen, P.3
-
24
-
-
33845963956
-
Contribution of autochtonous non-starter lactobacilli to proteolysis in Caciocavallo Pugliese cheese
-
Morea, M., Matarante, A., Di Cagno, R., Baruzzi, F. & Minervini, F. Contribution of autochtonous non-starter lactobacilli to proteolysis in Caciocavallo Pugliese cheese. Int. Dairy J. 17, 525-534 (2007).
-
(2007)
Int. Dairy J
, vol.17
, pp. 525-534
-
-
Morea, M.1
Matarante, A.2
Di Cagno, R.3
Baruzzi, F.4
Minervini, F.5
-
25
-
-
84865333407
-
Accelerated ripening of Caciocavallo Pugliese cheese with attenuated adjuncts of selected nonstarter lactobacilli
-
Di Cagno, R., De Pasquale, I., De Angelis, M. & Gobbetti, M. Accelerated ripening of Caciocavallo Pugliese cheese with attenuated adjuncts of selected nonstarter lactobacilli. J. Dairy Sci. 95, 4784-4795 (2012).
-
(2012)
J. Dairy Sci
, vol.95
, pp. 4784-4795
-
-
Di Cagno, R.1
De Pasquale, I.2
De Angelis, M.3
Gobbetti, M.4
-
27
-
-
1142265853
-
Monocarboxylic acid production by lactococci and lactobacilli
-
Ganesan, B., Seefeldt, K. & Weimer, B. C. Monocarboxylic acid production by lactococci and lactobacilli. Int. Dairy J. 14, 237-246 (2004).
-
(2004)
Int. Dairy J
, vol.14
, pp. 237-246
-
-
Ganesan, B.1
Seefeldt, K.2
Weimer, B.C.3
-
28
-
-
0347931878
-
Flavours of cheese products: Metabolic pathways, analytical tools and identification of producing strains
-
Marillay, M. & Casey, M. G. Flavours of cheese products: metabolic pathways, analytical tools and identification of producing strains. Int. J. Food Microbiol. 90, 139-159 (2004).
-
(2004)
Int. J. Food Microbiol
, vol.90
, pp. 139-159
-
-
Marillay, M.1
Casey, M.G.2
-
29
-
-
84868610117
-
Remake" by high-throughput sequencing of the microbiota involved in the production of water buffalo mozzarella cheese
-
Ercolini, D., De Filippis, F., La Storia, A. & Iacono, M. "Remake" by high-throughput sequencing of the microbiota involved in the production of water buffalo mozzarella cheese. Appl. Environ. Microbiol. 78, 8142-8145 (2012).
-
(2012)
Appl. Environ. Microbiol
, vol.78
, pp. 8142-8145
-
-
Ercolini, D.1
De Filippis, F.2
La Storia, A.3
Iacono, M.4
-
30
-
-
84911413509
-
The same microbiota and a potentially discriminant metabolome in the saliva of omnivore, ovo-lacto-vegetarian and vegan individuals
-
De Filippis, F. et al. The same microbiota and a potentially discriminant metabolome in the saliva of omnivore, ovo-lacto-vegetarian and vegan individuals. PLoS ONE 9(11), e112373 (2014).
-
(2014)
PLoS ONE
, vol.9
, Issue.11
-
-
De Filippis, F.1
-
31
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso J. G. et al. QIIME allows analysis of high-throughput community sequencing data. Nat. Methods 7, 335-336 (2010).
-
(2010)
Nat. Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
-
32
-
-
77957244650
-
Search and clustering orders of magnitude faster than BLAST
-
Edgar, R. C. Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26, 2460-2461 (2010).
-
(2010)
Bioinformatics
, vol.26
, pp. 2460-2461
-
-
Edgar, R.C.1
-
33
-
-
34548293679
-
Naïve Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
-
Wang, Q., Garrity, G. M., Tiedje, J. M. & Cole, J. R. Naïve Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl. Environ. Microbiol. 73, 5261-5267 (2007).
-
(2007)
Appl. Environ. Microbiol
, vol.73
, pp. 5261-5267
-
-
Wang, Q.1
Garrity, G.M.2
Tiedje, J.M.3
Cole, J.R.4
-
34
-
-
84857122937
-
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
-
McDonald, D. et al. An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea. ISME J 6, 610-618 (2012).
-
(2012)
ISME J
, vol.6
, pp. 610-618
-
-
McDonald, D.1
-
35
-
-
80255127234
-
Cutadapt removes adapter sequences from high-throughput sequencing reads
-
Martin, M. Cutadapt removes adapter sequences from high-throughput sequencing reads. The EMBnet Journal 17, 120-112 (2011).
-
(2011)
The EMBnet Journal
, vol.17
, pp. 120-122
-
-
Martin, M.1
-
36
-
-
77957151956
-
SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data
-
Cox, M. P., Peterson, D. A. & Biggs, P. J. SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data. BMC Bioinformatics 11, 485 (2010).
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 485
-
-
Cox, M.P.1
Peterson, D.A.2
Biggs, P.J.3
-
37
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
Langmead, B. & Salzberg, S. L. Fast gapped-read alignment with Bowtie 2. Nat. Methods 9, 357-359 (2012).
-
(2012)
Nat. Methods
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
38
-
-
84891760956
-
Information, knowledge and principle: Back to metabolism in KEGG
-
Kanehisa, M., Goto, S., Sato, Y., Kawashima, M., Furumichi, M. & Tanabe, M. Data, information, knowledge and principle: back to metabolism in KEGG. Nucleic Acids Res. 42, D199-D205 (2014).
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D199-D205
-
-
Kanehisa, M.1
Goto, S.2
Sato, Y.3
Kawashima, M.4
Furumichi, M.5
Data, T.M.6
-
39
-
-
84907262823
-
MBLAST: Keeping up with the sequencing explosion for (meta) genome analysis
-
Davis, C. et al. mBLAST: keeping up with the sequencing explosion for (meta) genome analysis. J. Data Mining Genomics Proteomics 4, 135 (2013).
-
(2013)
J. Data Mining Genomics Proteomics
, vol.4
, pp. 135
-
-
Davis, C.1
-
40
-
-
68549104404
-
The sequence alignment/map format and samtool
-
Li, H. et al. The sequence alignment/map format and samtool. Bioinformatics 25, 2078-2079 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
-
41
-
-
84924629414
-
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
-
Love, M. I., Huber, W. & Anders, S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol. 15, 550 (2014).
-
(2014)
Genome Biol
, vol.15
, pp. 550
-
-
Love, M.I.1
Huber, W.2
Anders, S.3
-
42
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini, Y. & Hochberg, Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. Series B. Stat. Methodol. 57, 289-300 (1995).
-
(1995)
J. R. Stat. Soc. Series B. Stat. Methodol
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
43
-
-
0242490780
-
Cytoscape: A Software environment for integrated models of biomolecular interaction networks
-
Shannon, P. et al. Cytoscape: A Software environment for integrated models of biomolecular interaction networks. Genome Res. 13(11), 2498-2504 (2003).
-
(2003)
Genome Res
, vol.13
, Issue.11
, pp. 2498-2504
-
-
Shannon, P.1
-
44
-
-
0037467106
-
Optimization of solid phase microextraction analysis for the headspace volatile compounds of Parmesan cheese
-
Lee, J. H., Diono, R., Kim, G. Y. & Min, D. B. Optimization of solid phase microextraction analysis for the headspace volatile compounds of Parmesan cheese. J. Agric. Food Chem. 51, 1136-1140 (2003).
-
(2003)
J. Agric. Food Chem
, vol.51
, pp. 1136-1140
-
-
Lee, J.H.1
Diono, R.2
Kim, G.Y.3
Min, D.B.4
-
45
-
-
78651262750
-
Characterization of the volatile organic compounds of Italian "fossa" cheese by solid-phase microextraction gas chromatography/mass spectrometry
-
Gioacchini, A. M., De Santi, M., Guescini, M., Brandi, G. & Stocchi, V. Characterization of the volatile organic compounds of Italian "Fossa" cheese by solid-phase microextraction gas chromatography/mass spectrometry. Rapid Commun. Mass Spectrom. 24, 3405-3412 (2010).
-
(2010)
Rapid Commun. Mass Spectrom
, vol.24
, pp. 3405-3412
-
-
Gioacchini, A.M.1
De Santi, M.2
Guescini, M.3
Brandi, G.4
Stocchi, V.5
-
47
-
-
84928763372
-
Role of intestinal brush border peptidases in the simulated digestion of milk proteins
-
Picariello, G. et al. Role of intestinal brush border peptidases in the simulated digestion of milk proteins. Mol. Nutr. Food Res. 59, 948-956 (2015).
-
(2015)
Mol. Nutr. Food Res
, vol.59
, pp. 948-956
-
-
Picariello, G.1
-
48
-
-
79954447180
-
A peptidomic approach for monitoring and characterizing peptide cyanotoxins produced in Italian lakes by matrix-assisted laser desorption/ionization and quadrupole time-of-flight mass spectrometry
-
Ferranti, P., Nasi, A., Bruno, M., Basile, A., Serpe, L. & Gallo, P. A peptidomic approach for monitoring and characterizing peptide cyanotoxins produced in Italian lakes by matrix-assisted laser desorption/ionization and quadrupole time-of-flight mass spectrometry. Rapid Commun. Mass Spectrom. 25, 1173-1183 (2011).
-
(2011)
Rapid Commun. Mass Spectrom
, vol.25
, pp. 1173-1183
-
-
Ferranti, P.1
Nasi, A.2
Bruno, M.3
Basile, A.4
Serpe, L.5
Gallo, P.6
|