-
1
-
-
84907323468
-
Cross-kingdom chemical communication drives a heritable, mutually beneficial prion-based transformation of metabolism
-
Jarosz D.F., Brown J.C., Walker G.A., Datta M.S., Ung W.L., Lancaster A.K., Rotem A., Chang A., Newby G.A., Weitz D.A., et al. Cross-kingdom chemical communication drives a heritable, mutually beneficial prion-based transformation of metabolism. Cell 2014, 158:1083-1093.
-
(2014)
Cell
, vol.158
, pp. 1083-1093
-
-
Jarosz, D.F.1
Brown, J.C.2
Walker, G.A.3
Datta, M.S.4
Ung, W.L.5
Lancaster, A.K.6
Rotem, A.7
Chang, A.8
Newby, G.A.9
Weitz, D.A.10
-
2
-
-
84926646130
-
Distributing a metabolic pathway among a microbial consortium enhances production of natural products
-
Zhou K., Qiao K., Edgar S., Stephanopoulos G. Distributing a metabolic pathway among a microbial consortium enhances production of natural products. Nat Biotechnol 2015, 33:377-383.
-
(2015)
Nat Biotechnol
, vol.33
, pp. 377-383
-
-
Zhou, K.1
Qiao, K.2
Edgar, S.3
Stephanopoulos, G.4
-
3
-
-
84956606700
-
Rationally engineered synthetic coculture for improved biomass and product formation
-
Santala S., Karp M., Santala V. Rationally engineered synthetic coculture for improved biomass and product formation. PLoS One 2014, 9:e113786.
-
(2014)
PLoS One
, vol.9
, pp. e113786
-
-
Santala, S.1
Karp, M.2
Santala, V.3
-
4
-
-
84922937832
-
A new antibiotic kills pathogens without detectable resistance
-
Ling L.L., Schneider T., Peoples A.J., Spoering A.L., Engels I., Conlon B.P., Mueller A., Schaberle T.F., Hughes D.E., Epstein S., et al. A new antibiotic kills pathogens without detectable resistance. Nature 2015, 517:455-459.
-
(2015)
Nature
, vol.517
, pp. 455-459
-
-
Ling, L.L.1
Schneider, T.2
Peoples, A.J.3
Spoering, A.L.4
Engels, I.5
Conlon, B.P.6
Mueller, A.7
Schaberle, T.F.8
Hughes, D.E.9
Epstein, S.10
-
5
-
-
84905395451
-
Nutrient cross-feeding in the microbial world
-
Seth E.C., Taga M.E. Nutrient cross-feeding in the microbial world. Front Microbiol 2014, 5:350.
-
(2014)
Front Microbiol
, vol.5
, pp. 350
-
-
Seth, E.C.1
Taga, M.E.2
-
6
-
-
84876026396
-
Microbial syntrophy: interaction for the common good
-
Morris B.E., Henneberger R., Huber H., Moissl-Eichinger C. Microbial syntrophy: interaction for the common good. FEMS Microbiol Rev 2013, 37:384-406.
-
(2013)
FEMS Microbiol Rev
, vol.37
, pp. 384-406
-
-
Morris, B.E.1
Henneberger, R.2
Huber, H.3
Moissl-Eichinger, C.4
-
7
-
-
84929440325
-
Metabolic dependencies drive species co-occurrence in diverse microbial communities
-
Zelezniak A., Andrejev S., Ponomarova O., Mende D.R., Bork P., Patil K.R. Metabolic dependencies drive species co-occurrence in diverse microbial communities. Proc Natl Acad Sci U S A 2015, 112:6449-6454.
-
(2015)
Proc Natl Acad Sci U S A
, vol.112
, pp. 6449-6454
-
-
Zelezniak, A.1
Andrejev, S.2
Ponomarova, O.3
Mende, D.R.4
Bork, P.5
Patil, K.R.6
-
8
-
-
84861557084
-
Species interactions alter evolutionary responses to a novel environment
-
Lawrence D., Fiegna F., Behrends V., Bundy J.G., Phillimore A.B., Bell T., Barraclough T.G. Species interactions alter evolutionary responses to a novel environment. PLoS Biol 2012, 10:e1001330.
-
(2012)
PLoS Biol
, vol.10
, pp. e1001330
-
-
Lawrence, D.1
Fiegna, F.2
Behrends, V.3
Bundy, J.G.4
Phillimore, A.B.5
Bell, T.6
Barraclough, T.G.7
-
9
-
-
84907379985
-
Cooperative secretions facilitate host range expansion in bacteria
-
McNally L., Viana M., Brown S.P. Cooperative secretions facilitate host range expansion in bacteria. Nat Commun 2014, 5:4594.
-
(2014)
Nat Commun
, vol.5
, pp. 4594
-
-
McNally, L.1
Viana, M.2
Brown, S.P.3
-
10
-
-
84899480571
-
Fitness and stability of obligate cross-feeding interactions that emerge upon gene loss in bacteria
-
Pande S., Merker H., Bohl K., Reichelt M., Schuster S., de Figueiredo L.F., Kaleta C., Kost C. Fitness and stability of obligate cross-feeding interactions that emerge upon gene loss in bacteria. ISME J 2014, 8:953-962.
-
(2014)
ISME J
, vol.8
, pp. 953-962
-
-
Pande, S.1
Merker, H.2
Bohl, K.3
Reichelt, M.4
Schuster, S.5
de Figueiredo, L.F.6
Kaleta, C.7
Kost, C.8
-
11
-
-
84927693444
-
High prevalence of biofilm synergy among bacterial soil isolates in cocultures indicates bacterial interspecific cooperation
-
Ren D., Madsen J.S., Sorensen S.J., Burmolle M. High prevalence of biofilm synergy among bacterial soil isolates in cocultures indicates bacterial interspecific cooperation. ISME J 2015, 9:81-89.
-
(2015)
ISME J
, vol.9
, pp. 81-89
-
-
Ren, D.1
Madsen, J.S.2
Sorensen, S.J.3
Burmolle, M.4
-
12
-
-
78650601515
-
Multiple syntrophic interactions in a terephthalate-degrading methanogenic consortium
-
Lykidis A., Chen C.L., Tringe S.G., McHardy A.C., Copeland A., Kyrpides N.C., Hugenholtz P., Macarie H., Olmos A., Monroy O., et al. Multiple syntrophic interactions in a terephthalate-degrading methanogenic consortium. ISME J 2011, 5:122-130.
-
(2011)
ISME J
, vol.5
, pp. 122-130
-
-
Lykidis, A.1
Chen, C.L.2
Tringe, S.G.3
McHardy, A.C.4
Copeland, A.5
Kyrpides, N.C.6
Hugenholtz, P.7
Macarie, H.8
Olmos, A.9
Monroy, O.10
-
13
-
-
84908368912
-
Identification of toluene degraders in a methanogenic enrichment culture
-
Fowler S.J., Gutierrez-Zamora M.L., Manefield M., Gieg L.M. Identification of toluene degraders in a methanogenic enrichment culture. FEMS Microbiol Ecol 2014, 89:625-636.
-
(2014)
FEMS Microbiol Ecol
, vol.89
, pp. 625-636
-
-
Fowler, S.J.1
Gutierrez-Zamora, M.L.2
Manefield, M.3
Gieg, L.M.4
-
14
-
-
84923848643
-
Preferential use of central metabolism in vivo reveals a nutritional basis for polymicrobial infection
-
Alteri C.J., Himpsl S.D., Mobley H.L. Preferential use of central metabolism in vivo reveals a nutritional basis for polymicrobial infection. PLoS Pathog 2015, 11:e1004601.
-
(2015)
PLoS Pathog
, vol.11
, pp. e1004601
-
-
Alteri, C.J.1
Himpsl, S.D.2
Mobley, H.L.3
-
15
-
-
84867746452
-
Metabolic specialization and the assembly of microbial communities
-
Johnson D.R., Goldschmidt F., Lilja E.E., Ackermann M. Metabolic specialization and the assembly of microbial communities. ISME J 2012, 6:1985-1991.
-
(2012)
ISME J
, vol.6
, pp. 1985-1991
-
-
Johnson, D.R.1
Goldschmidt, F.2
Lilja, E.E.3
Ackermann, M.4
-
16
-
-
78349245948
-
Novel cooperation experimentally evolved between species
-
Harcombe W. Novel cooperation experimentally evolved between species. Evolution 2010, 64:2166-2172.
-
(2010)
Evolution
, vol.64
, pp. 2166-2172
-
-
Harcombe, W.1
-
17
-
-
84903741051
-
Plant-fungal ecology. Niche engineering demonstrates a latent capacity for fungal-algal mutualism
-
Hom E.F., Murray A.W. Plant-fungal ecology. Niche engineering demonstrates a latent capacity for fungal-algal mutualism. Science 2014, 345:94-98.
-
(2014)
Science
, vol.345
, pp. 94-98
-
-
Hom, E.F.1
Murray, A.W.2
-
18
-
-
77956415336
-
Emergent cooperation in microbial metabolism
-
Wintermute E.H., Silver P.A. Emergent cooperation in microbial metabolism. Mol Syst Biol 2010, 6:407.
-
(2010)
Mol Syst Biol
, vol.6
, pp. 407
-
-
Wintermute, E.H.1
Silver, P.A.2
-
20
-
-
84918534542
-
Evolutionary limits to cooperation in microbial communities
-
Oliveira N.M., Niehus R., Foster K.R. Evolutionary limits to cooperation in microbial communities. Proc Natl Acad Sci U S A 2014, 111:17941-17946.
-
(2014)
Proc Natl Acad Sci U S A
, vol.111
, pp. 17941-17946
-
-
Oliveira, N.M.1
Niehus, R.2
Foster, K.R.3
-
21
-
-
84867405105
-
Competition, not cooperation, dominates interactions among culturable microbial species
-
Foster K.R., Bell T. Competition, not cooperation, dominates interactions among culturable microbial species. Curr Biol 2012, 22:1845-1850.
-
(2012)
Curr Biol
, vol.22
, pp. 1845-1850
-
-
Foster, K.R.1
Bell, T.2
-
22
-
-
84886003327
-
Spatial structure facilitates cooperation in a social dilemma: empirical evidence from a bacterial community
-
Hol F.J., Galajda P., Nagy K., Woolthuis R.G., Dekker C., Keymer J.E. Spatial structure facilitates cooperation in a social dilemma: empirical evidence from a bacterial community. PLoS One 2013, 8:e77042.
-
(2013)
PLoS One
, vol.8
, pp. e77042
-
-
Hol, F.J.1
Galajda, P.2
Nagy, K.3
Woolthuis, R.G.4
Dekker, C.5
Keymer, J.E.6
-
23
-
-
84860511582
-
The Black Queen Hypothesis: evolution of dependencies through adaptive gene loss
-
Morris J.J., Lenski R.E., Zinser E.R. The Black Queen Hypothesis: evolution of dependencies through adaptive gene loss. MBio 2012, 3.
-
(2012)
MBio
, pp. 3
-
-
Morris, J.J.1
Lenski, R.E.2
Zinser, E.R.3
-
24
-
-
84890523197
-
Spatial dilemmas of diffusible public goods
-
Allen B., Gore J., Nowak M.A. Spatial dilemmas of diffusible public goods. Elife 2013, 2:e01169.
-
(2013)
Elife
, vol.2
, pp. e01169
-
-
Allen, B.1
Gore, J.2
Nowak, M.A.3
-
25
-
-
84861443800
-
Natural strategies for the spatial optimization of metabolism in synthetic biology
-
Agapakis C.M., Boyle P.M., Silver P.A. Natural strategies for the spatial optimization of metabolism in synthetic biology. Nat Chem Biol 2012, 8:527-535.
-
(2012)
Nat Chem Biol
, vol.8
, pp. 527-535
-
-
Agapakis, C.M.1
Boyle, P.M.2
Silver, P.A.3
-
26
-
-
84875791326
-
Finlay B:Free-Living Protozoa with Endosymbiotic Methanogens.
-
In (Endo)symbiotic Methanogenic Archaea. Edited by Hackstein JHP: Microbiology Monographs,
-
Fenchel T, Finlay B: Free-Living Protozoa with Endosymbiotic Methanogens. In (Endo)symbiotic Methanogenic Archaea. Edited by Hackstein JHP: Microbiology Monographs, vol. 19. Springer Berlin Heidelberg; 2010:1-11.
-
(2010)
, vol.19
, pp. 1-11
-
-
Fenchel, T.1
-
27
-
-
84881477852
-
A latent capacity for evolutionary innovation through exaptation in metabolic systems
-
Barve A., Wagner A. A latent capacity for evolutionary innovation through exaptation in metabolic systems. Nature 2013, 500:203-206.
-
(2013)
Nature
, vol.500
, pp. 203-206
-
-
Barve, A.1
Wagner, A.2
-
28
-
-
84865972260
-
Extensive exometabolome analysis reveals extended overflow metabolism in various microorganisms
-
Paczia N., Nilgen A., Lehmann T., Gatgens J., Wiechert W., Noack S. Extensive exometabolome analysis reveals extended overflow metabolism in various microorganisms. Microb Cell Fact 2012, 11:122.
-
(2012)
Microb Cell Fact
, vol.11
, pp. 122
-
-
Paczia, N.1
Nilgen, A.2
Lehmann, T.3
Gatgens, J.4
Wiechert, W.5
Noack, S.6
-
29
-
-
84926288180
-
Bistability in a metabolic network underpins the de novo evolution of colony switching in Pseudomonas fluorescens
-
Gallie J., Libby E., Bertels F., Remigi P., Jendresen C.B., Ferguson G.C., Desprat N., Buffing M.F., Sauer U., Beaumont H.J., et al. Bistability in a metabolic network underpins the de novo evolution of colony switching in Pseudomonas fluorescens. PLoS Biol 2015, 13:e1002109.
-
(2015)
PLoS Biol
, vol.13
, pp. e1002109
-
-
Gallie, J.1
Libby, E.2
Bertels, F.3
Remigi, P.4
Jendresen, C.B.5
Ferguson, G.C.6
Desprat, N.7
Buffing, M.F.8
Sauer, U.9
Beaumont, H.J.10
-
30
-
-
78650237493
-
A molecular mechanism that stabilizes cooperative secretions in Pseudomonas aeruginosa
-
Xavier J.B., Kim W., Foster K.R. A molecular mechanism that stabilizes cooperative secretions in Pseudomonas aeruginosa. Mol Microbiol 2011, 79:166-179.
-
(2011)
Mol Microbiol
, vol.79
, pp. 166-179
-
-
Xavier, J.B.1
Kim, W.2
Foster, K.R.3
-
31
-
-
84936985580
-
The demographic determinants of human microbiome health
-
Estrela S., Whiteley M., Brown S.P. The demographic determinants of human microbiome health. Trends Microbiol 2015, 23:134-141.
-
(2015)
Trends Microbiol
, vol.23
, pp. 134-141
-
-
Estrela, S.1
Whiteley, M.2
Brown, S.P.3
-
32
-
-
80052384000
-
Differential response of Streptococcus mutans towards friend and foe in mixed-species cultures
-
Liu J., Wu C., Huang I.H., Merritt J., Qi F. Differential response of Streptococcus mutans towards friend and foe in mixed-species cultures. Microbiology 2011, 157:2433-2444.
-
(2011)
Microbiology
, vol.157
, pp. 2433-2444
-
-
Liu, J.1
Wu, C.2
Huang, I.H.3
Merritt, J.4
Qi, F.5
-
33
-
-
84899957349
-
Functional and phylogenetic assembly of microbial communities in the human microbiome
-
Shafquat A., Joice R., Simmons S.L., Huttenhower C. Functional and phylogenetic assembly of microbial communities in the human microbiome. Trends Microbiol 2014, 22:261-266.
-
(2014)
Trends Microbiol
, vol.22
, pp. 261-266
-
-
Shafquat, A.1
Joice, R.2
Simmons, S.L.3
Huttenhower, C.4
-
34
-
-
0242300069
-
The genome of Nanoarchaeum equitans: insights into early archaeal evolution and derived parasitism
-
Waters E., Hohn M.J., Ahel I., Graham D.E., Adams M.D., Barnstead M., Beeson K.Y., Bibbs L., Bolanos R., Keller M., et al. The genome of Nanoarchaeum equitans: insights into early archaeal evolution and derived parasitism. Proc Natl Acad Sci U S A 2003, 100:12984-12988.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 12984-12988
-
-
Waters, E.1
Hohn, M.J.2
Ahel, I.3
Graham, D.E.4
Adams, M.D.5
Barnstead, M.6
Beeson, K.Y.7
Bibbs, L.8
Bolanos, R.9
Keller, M.10
-
35
-
-
84923382551
-
Bacterial assembly and temporal dynamics in activated sludge of a full-scale municipal wastewater treatment plant
-
Ju F., Zhang T. Bacterial assembly and temporal dynamics in activated sludge of a full-scale municipal wastewater treatment plant. ISME J 2015, 9:683-695.
-
(2015)
ISME J
, vol.9
, pp. 683-695
-
-
Ju, F.1
Zhang, T.2
-
36
-
-
81155125185
-
Metabolic strategies of free-living and aggregate-associated bacterial communities inferred from biologic and chemical profiles in the Black Sea suboxic zone
-
Fuchsman C.A., Kirkpatrick J.B., Brazelton W.J., Murray J.W., Staley J.T. Metabolic strategies of free-living and aggregate-associated bacterial communities inferred from biologic and chemical profiles in the Black Sea suboxic zone. FEMS Microbiol Ecol 2011, 78:586-603.
-
(2011)
FEMS Microbiol Ecol
, vol.78
, pp. 586-603
-
-
Fuchsman, C.A.1
Kirkpatrick, J.B.2
Brazelton, W.J.3
Murray, J.W.4
Staley, J.T.5
-
37
-
-
84884675433
-
Linking microbial community structure to beta-glucosidic function in soil aggregates
-
Bailey V.L., Fansler S.J., Stegen J.C., McCue L.A. Linking microbial community structure to beta-glucosidic function in soil aggregates. ISME J 2013, 7:2044-2053.
-
(2013)
ISME J
, vol.7
, pp. 2044-2053
-
-
Bailey, V.L.1
Fansler, S.J.2
Stegen, J.C.3
McCue, L.A.4
-
38
-
-
84864579031
-
Microbial co-occurrence relationships in the human microbiome
-
Faust K., Sathirapongsasuti J.F., Izard J., Segata N., Gevers D., Raes J., Huttenhower C. Microbial co-occurrence relationships in the human microbiome. PLoS Comput Biol 2012, 8:e1002606.
-
(2012)
PLoS Comput Biol
, vol.8
, pp. e1002606
-
-
Faust, K.1
Sathirapongsasuti, J.F.2
Izard, J.3
Segata, N.4
Gevers, D.5
Raes, J.6
Huttenhower, C.7
-
39
-
-
84865733148
-
Inferring correlation networks from genomic survey data
-
Friedman J., Alm E.J. Inferring correlation networks from genomic survey data. PLoS Comput Biol 2012, 8:e1002687.
-
(2012)
PLoS Comput Biol
, vol.8
, pp. e1002687
-
-
Friedman, J.1
Alm, E.J.2
-
40
-
-
84905030166
-
Deciphering microbial interactions and detecting keystone species with co-occurrence networks
-
Berry D., Widder S. Deciphering microbial interactions and detecting keystone species with co-occurrence networks. Front Microbiol 2014, 5:219.
-
(2014)
Front Microbiol
, vol.5
, pp. 219
-
-
Berry, D.1
Widder, S.2
-
41
-
-
84920964214
-
Cryptic carbon and sulfur cycling between surface ocean plankton
-
Durham B.P., Sharma S., Luo H., Smith C.B., Amin S.A., Bender S.J., Dearth S.P., Van Mooy B.A., Campagna S.R., Kujawinski E.B., et al. Cryptic carbon and sulfur cycling between surface ocean plankton. Proc Natl Acad Sci U S A 2015, 112:453-457.
-
(2015)
Proc Natl Acad Sci U S A
, vol.112
, pp. 453-457
-
-
Durham, B.P.1
Sharma, S.2
Luo, H.3
Smith, C.B.4
Amin, S.A.5
Bender, S.J.6
Dearth, S.P.7
Van Mooy, B.A.8
Campagna, S.R.9
Kujawinski, E.B.10
-
42
-
-
84899413958
-
Single-cell genome and metatranscriptome sequencing reveal metabolic interactions of an alkane-degrading methanogenic community
-
Embree M., Nagarajan H., Movahedi N., Chitsaz H., Zengler K. Single-cell genome and metatranscriptome sequencing reveal metabolic interactions of an alkane-degrading methanogenic community. ISME J 2014, 8:757-767.
-
(2014)
ISME J
, vol.8
, pp. 757-767
-
-
Embree, M.1
Nagarajan, H.2
Movahedi, N.3
Chitsaz, H.4
Zengler, K.5
-
43
-
-
84907880485
-
Proteomics of Fusobacterium nucleatum within a model developing oral microbial community
-
Hendrickson E.L., Wang T., Beck D.A., Dickinson B.C., Wright C.J., R J.L., Hackett M. Proteomics of Fusobacterium nucleatum within a model developing oral microbial community. Microbiologyopen 2014, 3:729-751.
-
(2014)
Microbiologyopen
, vol.3
, pp. 729-751
-
-
Hendrickson, E.L.1
Wang, T.2
Beck, D.A.3
Dickinson, B.C.4
Wright, C.J.R.J.L.5
Hackett, M.6
-
44
-
-
84924387909
-
Quantitative proteomics reveal distinct protein regulations caused by Aggregatibacter actinomycetemcomitans within subgingival biofilms
-
Bao K., Bostanci N., Selevsek N., Thurnheer T., Belibasakis G.N. Quantitative proteomics reveal distinct protein regulations caused by Aggregatibacter actinomycetemcomitans within subgingival biofilms. PLoS One 2015, 10:e0119222.
-
(2015)
PLoS One
, vol.10
, pp. e0119222
-
-
Bao, K.1
Bostanci, N.2
Selevsek, N.3
Thurnheer, T.4
Belibasakis, G.N.5
-
45
-
-
84905639696
-
Metaproteomics reveals differential modes of metabolic coupling among ubiquitous oxygen minimum zone microbes
-
Hawley A.K., Brewer H.M., Norbeck A.D., Pasa-Tolic L., Hallam S.J. Metaproteomics reveals differential modes of metabolic coupling among ubiquitous oxygen minimum zone microbes. Proc Natl Acad Sci U S A 2014, 111:11395-11400.
-
(2014)
Proc Natl Acad Sci U S A
, vol.111
, pp. 11395-11400
-
-
Hawley, A.K.1
Brewer, H.M.2
Norbeck, A.D.3
Pasa-Tolic, L.4
Hallam, S.J.5
-
46
-
-
79953227401
-
Subpopulation-specific metabolic pathway usage in mixed cultures as revealed by reporter protein-based 13C analysis
-
Ruhl M., Hardt W.D., Sauer U. Subpopulation-specific metabolic pathway usage in mixed cultures as revealed by reporter protein-based 13C analysis. Appl Environ Microbiol 2011, 77:1816-1821.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 1816-1821
-
-
Ruhl, M.1
Hardt, W.D.2
Sauer, U.3
-
47
-
-
84907587772
-
A peptide-based method for 13C metabolic flux analysis in microbial communities
-
Ghosh A., Nilmeier J., Weaver D., Adams P.D., Keasling J.D., Mukhopadhyay A., Petzold C.J., Martin H.G. A peptide-based method for 13C metabolic flux analysis in microbial communities. PLoS Comput Biol 2014, 10:e1003827.
-
(2014)
PLoS Comput Biol
, vol.10
, pp. e1003827
-
-
Ghosh, A.1
Nilmeier, J.2
Weaver, D.3
Adams, P.D.4
Keasling, J.D.5
Mukhopadhyay, A.6
Petzold, C.J.7
Martin, H.G.8
-
48
-
-
84908291385
-
Multisubstrate isotope labeling and metagenomic analysis of active soil bacterial communities
-
e01157-01114
-
Verastegui Y., Cheng J., Engel K., Kolczynski D., Mortimer S., Lavigne J., Montalibet J., Romantsov T., Hall M., McConkey B.J., et al. Multisubstrate isotope labeling and metagenomic analysis of active soil bacterial communities. MBio 2014, 5. e01157-01114.
-
(2014)
MBio
, vol.5
-
-
Verastegui, Y.1
Cheng, J.2
Engel, K.3
Kolczynski, D.4
Mortimer, S.5
Lavigne, J.6
Montalibet, J.7
Romantsov, T.8
Hall, M.9
McConkey, B.J.10
-
49
-
-
84887008613
-
Bacterial farming by the fungus Morchella crassipes
-
Pion M., Spangenberg J.E., Simon A., Bindschedler S., Flury C., Chatelain A., Bshary R., Job D., Junier P. Bacterial farming by the fungus Morchella crassipes. Proc Biol Sci 2013, 280:20132242.
-
(2013)
Proc Biol Sci
, vol.280
, pp. 20132242
-
-
Pion, M.1
Spangenberg, J.E.2
Simon, A.3
Bindschedler, S.4
Flury, C.5
Chatelain, A.6
Bshary, R.7
Job, D.8
Junier, P.9
-
50
-
-
84885043115
-
Elucidation of in situ polycyclic aromatic hydrocarbon degradation by functional metaproteomics (protein-SIP)
-
Herbst F.A., Bahr A., Duarte M., Pieper D.H., Richnow H.H., von Bergen M., Seifert J., Bombach P. Elucidation of in situ polycyclic aromatic hydrocarbon degradation by functional metaproteomics (protein-SIP). Proteomics 2013, 13:2910-2920.
-
(2013)
Proteomics
, vol.13
, pp. 2910-2920
-
-
Herbst, F.A.1
Bahr, A.2
Duarte, M.3
Pieper, D.H.4
Richnow, H.H.5
von Bergen, M.6
Seifert, J.7
Bombach, P.8
-
51
-
-
84923340856
-
Metabolic cross-feeding via intercellular nanotubes among bacteria
-
Pande S., Shitut S., Freund L., Westermann M., Bertels F., Colesie C., Bischofs I.B., Kost C. Metabolic cross-feeding via intercellular nanotubes among bacteria. Nat Commun 2015, 6:6238.
-
(2015)
Nat Commun
, vol.6
, pp. 6238
-
-
Pande, S.1
Shitut, S.2
Freund, L.3
Westermann, M.4
Bertels, F.5
Colesie, C.6
Bischofs, I.B.7
Kost, C.8
-
52
-
-
84905179093
-
Inter-species interconnections in acid mine drainage microbial communities
-
Comolli L.R., Banfield J.F. Inter-species interconnections in acid mine drainage microbial communities. Front Microbiol 2014, 5:367.
-
(2014)
Front Microbiol
, vol.5
, pp. 367
-
-
Comolli, L.R.1
Banfield, J.F.2
-
53
-
-
84884176096
-
New methods for analysis of spatial distribution and coaggregation of microbial populations in complex biofilms
-
Almstrand R., Daims H., Persson F., Sorensson F., Hermansson M. New methods for analysis of spatial distribution and coaggregation of microbial populations in complex biofilms. Appl Environ Microbiol 2013, 79:5978-5987.
-
(2013)
Appl Environ Microbiol
, vol.79
, pp. 5978-5987
-
-
Almstrand, R.1
Daims, H.2
Persson, F.3
Sorensson, F.4
Hermansson, M.5
-
54
-
-
84939874205
-
A non-amplified FISH protocol to identify simultaneously different bacterial groups attached to eukaryotic phytoplankton
-
Cruz-López R., Maske H. A non-amplified FISH protocol to identify simultaneously different bacterial groups attached to eukaryotic phytoplankton. J Appl Phycol 2014, 27:797-804.
-
(2014)
J Appl Phycol
, vol.27
, pp. 797-804
-
-
Cruz-López, R.1
Maske, H.2
-
55
-
-
84863403687
-
Community analysis of high- and low-nucleic acid-containing bacteria in NW Mediterranean coastal waters using 16S rDNA pyrosequencing
-
Vila-Costa M., Gasol J.M., Sharma S., Moran M.A. Community analysis of high- and low-nucleic acid-containing bacteria in NW Mediterranean coastal waters using 16S rDNA pyrosequencing. Environ Microbiol 2012, 14:1390-1402.
-
(2012)
Environ Microbiol
, vol.14
, pp. 1390-1402
-
-
Vila-Costa, M.1
Gasol, J.M.2
Sharma, S.3
Moran, M.A.4
-
56
-
-
84881248157
-
Quantifying the metabolic activities of human-associated microbial communities across multiple ecological scales
-
Maurice C.F., Turnbaugh P.J. Quantifying the metabolic activities of human-associated microbial communities across multiple ecological scales. FEMS Microbiol Rev 2013, 37:830-848.
-
(2013)
FEMS Microbiol Rev
, vol.37
, pp. 830-848
-
-
Maurice, C.F.1
Turnbaugh, P.J.2
-
57
-
-
79951677254
-
The evolving field of imaging mass spectrometry and its impact on future biological research
-
Watrous J.D., Alexandrov T., Dorrestein P.C. The evolving field of imaging mass spectrometry and its impact on future biological research. J Mass Spectrom 2011, 46:209-222.
-
(2011)
J Mass Spectrom
, vol.46
, pp. 209-222
-
-
Watrous, J.D.1
Alexandrov, T.2
Dorrestein, P.C.3
-
58
-
-
84900874354
-
Bringing microbial interactions to light using imaging mass spectrometry
-
Shih C.J., Chen P.Y., Liaw C.C., Lai Y.M., Yang Y.L. Bringing microbial interactions to light using imaging mass spectrometry. Nat Prod Rep 2014, 31:739-755.
-
(2014)
Nat Prod Rep
, vol.31
, pp. 739-755
-
-
Shih, C.J.1
Chen, P.Y.2
Liaw, C.C.3
Lai, Y.M.4
Yang, Y.L.5
-
59
-
-
84883430904
-
Interspecies interactions stimulate diversification of the Streptomyces coelicolor secreted metabolome
-
Traxler M.F., Watrous J.D., Alexandrov T., Dorrestein P.C., Kolter R. Interspecies interactions stimulate diversification of the Streptomyces coelicolor secreted metabolome. MBio 2013, 4.
-
(2013)
MBio
, vol.4
-
-
Traxler, M.F.1
Watrous, J.D.2
Alexandrov, T.3
Dorrestein, P.C.4
Kolter, R.5
-
60
-
-
85028197479
-
Mass spectral similarity for untargeted metabolomics data analysis of complex mixtures
-
Garg N., Kapono C., Lim Y.W., Koyama N., Vermeij M.J., Conrad D., Rohwer F., Dorrestein P.C. Mass spectral similarity for untargeted metabolomics data analysis of complex mixtures. Int J Mass Spectrom 2015, 377:717-719.
-
(2015)
Int J Mass Spectrom
, vol.377
, pp. 717-719
-
-
Garg, N.1
Kapono, C.2
Lim, Y.W.3
Koyama, N.4
Vermeij, M.J.5
Conrad, D.6
Rohwer, F.7
Dorrestein, P.C.8
-
61
-
-
0037203773
-
Structural identification of a bacterial quorum-sensing signal containing boron
-
Chen X., Schauder S., Potier N., Van Dorsselaer A., Pelczer I., Bassler B.L., Hughson F.M. Structural identification of a bacterial quorum-sensing signal containing boron. Nature 2002, 415:545-549.
-
(2002)
Nature
, vol.415
, pp. 545-549
-
-
Chen, X.1
Schauder, S.2
Potier, N.3
Van Dorsselaer, A.4
Pelczer, I.5
Bassler, B.L.6
Hughson, F.M.7
-
62
-
-
84876403132
-
Going local: technologies for exploring bacterial microenvironments
-
Wessel A.K., Hmelo L., Parsek M.R., Whiteley M. Going local: technologies for exploring bacterial microenvironments. Nat Rev Microbiol 2013, 11:337-348.
-
(2013)
Nat Rev Microbiol
, vol.11
, pp. 337-348
-
-
Wessel, A.K.1
Hmelo, L.2
Parsek, M.R.3
Whiteley, M.4
-
63
-
-
80052066963
-
Nitrogen fixation and transfer in open ocean diatom-cyanobacterial symbioses
-
Foster R.A., Kuypers M.M., Vagner T., Paerl R.W., Musat N., Zehr J.P. Nitrogen fixation and transfer in open ocean diatom-cyanobacterial symbioses. ISME J 2011, 5:1484-1493.
-
(2011)
ISME J
, vol.5
, pp. 1484-1493
-
-
Foster, R.A.1
Kuypers, M.M.2
Vagner, T.3
Paerl, R.W.4
Musat, N.5
Zehr, J.P.6
-
64
-
-
70350134633
-
Deep-sea archaea fix and share nitrogen in methane-consuming microbial consortia
-
Dekas A.E., Poretsky R.S., Orphan V.J. Deep-sea archaea fix and share nitrogen in methane-consuming microbial consortia. Science 2009, 326:422-426.
-
(2009)
Science
, vol.326
, pp. 422-426
-
-
Dekas, A.E.1
Poretsky, R.S.2
Orphan, V.J.3
-
65
-
-
84891157577
-
Nitrate-based niche differentiation by distinct sulfate-reducing bacteria involved in the anaerobic oxidation of methane
-
Green-Saxena A., Dekas A.E., Dalleska N.F., Orphan V.J. Nitrate-based niche differentiation by distinct sulfate-reducing bacteria involved in the anaerobic oxidation of methane. ISME J 2014, 8:150-163.
-
(2014)
ISME J
, vol.8
, pp. 150-163
-
-
Green-Saxena, A.1
Dekas, A.E.2
Dalleska, N.F.3
Orphan, V.J.4
-
67
-
-
84907841705
-
Synthetic microbial consortia: from systematic analysis to construction and applications
-
Song H., Ding M.Z., Jia X.Q., Ma Q., Yuan Y.J. Synthetic microbial consortia: from systematic analysis to construction and applications. Chem Soc Rev 2014, 43:6954-6981.
-
(2014)
Chem Soc Rev
, vol.43
, pp. 6954-6981
-
-
Song, H.1
Ding, M.Z.2
Jia, X.Q.3
Ma, Q.4
Yuan, Y.J.5
-
68
-
-
84877023546
-
Metabolic activity and symbiotic interactions of lactic acid bacteria and yeasts isolated from water kefir
-
Stadie J., Gulitz A., Ehrmann M.A., Vogel R.F. Metabolic activity and symbiotic interactions of lactic acid bacteria and yeasts isolated from water kefir. Food Microbiol 2013, 35:92-98.
-
(2013)
Food Microbiol
, vol.35
, pp. 92-98
-
-
Stadie, J.1
Gulitz, A.2
Ehrmann, M.A.3
Vogel, R.F.4
-
69
-
-
84899471067
-
Eco-evolutionary feedbacks drive species interactions
-
Andrade-Dominguez A., Salazar E., Vargas-Lagunas Mdel C., Kolter R., Encarnacion S. Eco-evolutionary feedbacks drive species interactions. ISME J 2014, 8:1041-1054.
-
(2014)
ISME J
, vol.8
, pp. 1041-1054
-
-
Andrade-Dominguez, A.1
Salazar, E.2
Vargas-Lagunas Mdel, C.3
Kolter, R.4
Encarnacion, S.5
-
70
-
-
84901049717
-
Syntrophic exchange in synthetic microbial communities
-
Mee M.T., Collins J.J., Church G.M., Wang H.H. Syntrophic exchange in synthetic microbial communities. Proc Natl Acad Sci U S A 2014, 111:E2149-E2156.
-
(2014)
Proc Natl Acad Sci U S A
, vol.111
, pp. E2149-E2156
-
-
Mee, M.T.1
Collins, J.J.2
Church, G.M.3
Wang, H.H.4
-
71
-
-
78649707496
-
Direct exchange of electrons within aggregates of an evolved syntrophic coculture of anaerobic bacteria
-
Summers Z.M., Fogarty H.E., Leang C., Franks A.E., Malvankar N.S., Lovley D.R. Direct exchange of electrons within aggregates of an evolved syntrophic coculture of anaerobic bacteria. Science 2010, 330:1413-1415.
-
(2010)
Science
, vol.330
, pp. 1413-1415
-
-
Summers, Z.M.1
Fogarty, H.E.2
Leang, C.3
Franks, A.E.4
Malvankar, N.S.5
Lovley, D.R.6
-
72
-
-
84926433439
-
Fermented foods as experimentally tractable microbial ecosystems
-
Wolfe B.E., Dutton R.J. Fermented foods as experimentally tractable microbial ecosystems. Cell 2015, 161:49-55.
-
(2015)
Cell
, vol.161
, pp. 49-55
-
-
Wolfe, B.E.1
Dutton, R.J.2
-
73
-
-
84904578387
-
Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity
-
Wolfe B.E., Button J.E., Santarelli M., Dutton R.J. Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 2014, 158:422-433.
-
(2014)
Cell
, vol.158
, pp. 422-433
-
-
Wolfe, B.E.1
Button, J.E.2
Santarelli, M.3
Dutton, R.J.4
-
74
-
-
84896981679
-
Microbial species diversity, community dynamics, and metabolite kinetics of water kefir fermentation
-
Laureys D., De Vuyst L. Microbial species diversity, community dynamics, and metabolite kinetics of water kefir fermentation. Appl Environ Microbiol 2014, 80:2564-2572.
-
(2014)
Appl Environ Microbiol
, vol.80
, pp. 2564-2572
-
-
Laureys, D.1
De Vuyst, L.2
-
75
-
-
84880445186
-
Sequencing-based analysis of the bacterial and fungal composition of kefir grains and milks from multiple sources
-
Marsh A.J., O'Sullivan O., Hill C., Ross R.P., Cotter P.D. Sequencing-based analysis of the bacterial and fungal composition of kefir grains and milks from multiple sources. PLoS One 2013, 8:e69371.
-
(2013)
PLoS One
, vol.8
, pp. e69371
-
-
Marsh, A.J.1
O'Sullivan, O.2
Hill, C.3
Ross, R.P.4
Cotter, P.D.5
-
76
-
-
84891789294
-
An ecological network of polysaccharide utilization among human intestinal symbionts
-
Rakoff-Nahoum S., Coyne M.J., Comstock L.E. An ecological network of polysaccharide utilization among human intestinal symbionts. Curr Biol 2014, 24:40-49.
-
(2014)
Curr Biol
, vol.24
, pp. 40-49
-
-
Rakoff-Nahoum, S.1
Coyne, M.J.2
Comstock, L.E.3
-
77
-
-
57449090900
-
Defined spatial structure stabilizes a synthetic multispecies bacterial community
-
Kim H.J., Boedicker J.Q., Choi J.W., Ismagilov R.F. Defined spatial structure stabilizes a synthetic multispecies bacterial community. Proc Natl Acad Sci U S A 2008, 105:18188-18193.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 18188-18193
-
-
Kim, H.J.1
Boedicker, J.Q.2
Choi, J.W.3
Ismagilov, R.F.4
-
78
-
-
84887478311
-
3D printing of microscopic bacterial communities
-
Connell J.L., Ritschdorff E.T., Whiteley M., Shear J.B. 3D printing of microscopic bacterial communities. Proc Natl Acad Sci U S A 2013, 110:18380-18385.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. 18380-18385
-
-
Connell, J.L.1
Ritschdorff, E.T.2
Whiteley, M.3
Shear, J.B.4
-
79
-
-
0037062936
-
Local dispersal promotes biodiversity in a real-life game of rock-paper-scissors
-
Kerr B., Riley M.A., Feldman M.W., Bohannan B.J. Local dispersal promotes biodiversity in a real-life game of rock-paper-scissors. Nature 2002, 418:171-174.
-
(2002)
Nature
, vol.418
, pp. 171-174
-
-
Kerr, B.1
Riley, M.A.2
Feldman, M.W.3
Bohannan, B.J.4
-
80
-
-
84861212790
-
A programmable droplet-based microfluidic device applied to multiparameter analysis of single microbes and microbial communities
-
Leung K., Zahn H., Leaver T., Konwar K.M., Hanson N.W., Page A.P., Lo C.C., Chain P.S., Hallam S.J., Hansen C.L. A programmable droplet-based microfluidic device applied to multiparameter analysis of single microbes and microbial communities. Proc Natl Acad Sci U S A 2012, 109:7665-7670.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. 7665-7670
-
-
Leung, K.1
Zahn, H.2
Leaver, T.3
Konwar, K.M.4
Hanson, N.W.5
Page, A.P.6
Lo, C.C.7
Chain, P.S.8
Hallam, S.J.9
Hansen, C.L.10
-
81
-
-
84922394953
-
Co-culture systems and technologies: taking synthetic biology to the next level
-
Goers L., Freemont P., Polizzi K.M. Co-culture systems and technologies: taking synthetic biology to the next level. J R Soc Interface 2014, 11.
-
(2014)
J R Soc Interface
, pp. 11
-
-
Goers, L.1
Freemont, P.2
Polizzi, K.M.3
-
82
-
-
84902144538
-
Genome-based modeling and design of metabolic interactions in microbial communities
-
Mahadevan R., Henson M.A. Genome-based modeling and design of metabolic interactions in microbial communities. Comput Struct Biotechnol J 2012, 3:e201210008.
-
(2012)
Comput Struct Biotechnol J
, vol.3
, pp. e201210008
-
-
Mahadevan, R.1
Henson, M.A.2
-
83
-
-
78649677586
-
Environments that induce synthetic microbial ecosystems
-
Klitgord N., Segre D. Environments that induce synthetic microbial ecosystems. PLoS Comput Biol 2010, 6:e1001002.
-
(2010)
PLoS Comput Biol
, vol.6
, pp. e1001002
-
-
Klitgord, N.1
Segre, D.2
-
84
-
-
84859907317
-
A road map for the development of community systems (CoSy) biology
-
Zengler K., Palsson B.O. A road map for the development of community systems (CoSy) biology. Nat Rev Microbiol 2012, 10:366-372.
-
(2012)
Nat Rev Microbiol
, vol.10
, pp. 366-372
-
-
Zengler, K.1
Palsson, B.O.2
-
85
-
-
84927157543
-
Systems modeling approaches for microbial community studies: from metagenomics to inference of the community structure
-
Hanemaaijer M., Roling W.F., Olivier B.G., Khandelwal R.A., Teusink B., Bruggeman F.J. Systems modeling approaches for microbial community studies: from metagenomics to inference of the community structure. Front Microbiol 2015, 6:213.
-
(2015)
Front Microbiol
, vol.6
, pp. 213
-
-
Hanemaaijer, M.1
Roling, W.F.2
Olivier, B.G.3
Khandelwal, R.A.4
Teusink, B.5
Bruggeman, F.J.6
-
86
-
-
84899012698
-
D-OptCom: dynamic multi-level and multi-objective metabolic modeling of microbial communities
-
Zomorrodi A.R., Islam M.M., Maranas C.D. d-OptCom: dynamic multi-level and multi-objective metabolic modeling of microbial communities. ACS Synth Biol 2014, 3:247-257.
-
(2014)
ACS Synth Biol
, vol.3
, pp. 247-257
-
-
Zomorrodi, A.R.1
Islam, M.M.2
Maranas, C.D.3
-
87
-
-
84929888251
-
Anoxic conditions promote species-specific mutualism between gut microbes in silico
-
Heinken A., Thiele I. Anoxic conditions promote species-specific mutualism between gut microbes in silico. Appl Environ Microbiol 2015, 81:4049-4061.
-
(2015)
Appl Environ Microbiol
, vol.81
, pp. 4049-4061
-
-
Heinken, A.1
Thiele, I.2
-
88
-
-
84899459352
-
Metagenomic systems biology and metabolic modeling of the human microbiome: from species composition to community assembly rules
-
Levy R., Borenstein E. Metagenomic systems biology and metabolic modeling of the human microbiome: from species composition to community assembly rules. Gut Microbes 2014, 5:265-270.
-
(2014)
Gut Microbes
, vol.5
, pp. 265-270
-
-
Levy, R.1
Borenstein, E.2
-
89
-
-
84455174807
-
Competitive and cooperative metabolic interactions in bacterial communities
-
Freilich S., Zarecki R., Eilam O., Segal E.S., Henry C.S., Kupiec M., Gophna U., Sharan R., Ruppin E. Competitive and cooperative metabolic interactions in bacterial communities. Nat Commun 2011, 2:589.
-
(2011)
Nat Commun
, vol.2
, pp. 589
-
-
Freilich, S.1
Zarecki, R.2
Eilam, O.3
Segal, E.S.4
Henry, C.S.5
Kupiec, M.6
Gophna, U.7
Sharan, R.8
Ruppin, E.9
-
90
-
-
84881446358
-
Nitrogen losses in anoxic marine sediments driven by Thioploca-anammox bacterial consortia
-
Prokopenko M.G., Hirst M.B., De Brabandere L., Lawrence D.J., Berelson W.M., Granger J., Chang B.X., Dawson S., Crane E.J., Chong L., et al. Nitrogen losses in anoxic marine sediments driven by Thioploca-anammox bacterial consortia. Nature 2013, 500:194-198.
-
(2013)
Nature
, vol.500
, pp. 194-198
-
-
Prokopenko, M.G.1
Hirst, M.B.2
De Brabandere, L.3
Lawrence, D.J.4
Berelson, W.M.5
Granger, J.6
Chang, B.X.7
Dawson, S.8
Crane, E.J.9
Chong, L.10
-
91
-
-
32044439116
-
Stable coexistence of five bacterial strains as a cellulose-degrading community
-
Kato S., Haruta S., Cui Z.J., Ishii M., Igarashi Y. Stable coexistence of five bacterial strains as a cellulose-degrading community. Appl Environ Microbiol 2005, 71:7099-7106.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 7099-7106
-
-
Kato, S.1
Haruta, S.2
Cui, Z.J.3
Ishii, M.4
Igarashi, Y.5
-
92
-
-
51349112344
-
Network relationships of bacteria in a stable mixed culture
-
Kato S., Haruta S., Cui Z.J., Ishii M., Igarashi Y. Network relationships of bacteria in a stable mixed culture. Microb Ecol 2008, 56:403-411.
-
(2008)
Microb Ecol
, vol.56
, pp. 403-411
-
-
Kato, S.1
Haruta, S.2
Cui, Z.J.3
Ishii, M.4
Igarashi, Y.5
|