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Volumn 192, Issue , 2015, Pages 86-94

Characterization of the bacterial biodiversity in Pico cheese (an artisanal Azorean food)

Author keywords

Artisanal cheese; Bacterial diversity; Next generation sequencing

Indexed keywords

RNA 16S;

EID: 84907965038     PISSN: 01681605     EISSN: 18793460     Source Type: Journal    
DOI: 10.1016/j.ijfoodmicro.2014.09.031     Document Type: Article
Times cited : (76)

References (55)
  • 1
    • 0035919744 scopus 로고    scopus 로고
    • Microbiological and biochemical characteristics of Canestrato Pugliese cheese made from raw milk, pasteurised milk or by heating the curd in hot whey
    • Albenzio M., Corbo M.R., Rehman S.U., Fox P.F., De Angelis M., Corsetti A., Sevi A., Gobbetti M. Microbiological and biochemical characteristics of Canestrato Pugliese cheese made from raw milk, pasteurised milk or by heating the curd in hot whey. Int. J. Food Microbiol. 2001, 67:35-48.
    • (2001) Int. J. Food Microbiol. , vol.67 , pp. 35-48
    • Albenzio, M.1    Corbo, M.R.2    Rehman, S.U.3    Fox, P.F.4    De Angelis, M.5    Corsetti, A.6    Sevi, A.7    Gobbetti, M.8
  • 3
    • 70350326380 scopus 로고    scopus 로고
    • Diversity and evolution of the microbial populations during manufacture and ripening of Casín, a traditional Spanish, starter-free cheese made form cow's milk
    • Alegría A., Álvarez-Martín P., Sacristán N., Fernámdez E., Delgado S., Mayo B. Diversity and evolution of the microbial populations during manufacture and ripening of Casín, a traditional Spanish, starter-free cheese made form cow's milk. Int. J. Food Microbiol. 2009, 136:44-51.
    • (2009) Int. J. Food Microbiol. , vol.136 , pp. 44-51
    • Alegría, A.1    Álvarez-Martín, P.2    Sacristán, N.3    Fernámdez, E.4    Delgado, S.5    Mayo, B.6
  • 4
    • 84857839097 scopus 로고    scopus 로고
    • Biodiversity in Oscypek, a traditional Polish cheese, determined by culture-dependent and -independent approaches
    • Alegría A., Szczesny P., Mayo B., Bardowski J., Kowalczyk M. Biodiversity in Oscypek, a traditional Polish cheese, determined by culture-dependent and -independent approaches. Appl. Environ. Microbiol. 2012, 78:1890-1898.
    • (2012) Appl. Environ. Microbiol. , vol.78 , pp. 1890-1898
    • Alegría, A.1    Szczesny, P.2    Mayo, B.3    Bardowski, J.4    Kowalczyk, M.5
  • 5
    • 0002154022 scopus 로고    scopus 로고
    • A new method for non-parametric multivariate analysis of variance
    • Anderson M.J. A new method for non-parametric multivariate analysis of variance. Aust. Ecol. 2001, 26:32-46.
    • (2001) Aust. Ecol. , vol.26 , pp. 32-46
    • Anderson, M.J.1
  • 6
    • 2442658913 scopus 로고    scopus 로고
    • The role of the nonstarter lactic acid bacteria in Cheddar cheese ripening
    • Banks J.M., Williams A.G. The role of the nonstarter lactic acid bacteria in Cheddar cheese ripening. Int. J. Dairy Technol. 2004, 57:145-152.
    • (2004) Int. J. Dairy Technol. , vol.57 , pp. 145-152
    • Banks, J.M.1    Williams, A.G.2
  • 7
    • 84866597490 scopus 로고    scopus 로고
    • Next-generation approaches to the microbial ecology of food fermentations
    • Bokulich N.A., Mills D.A. Next-generation approaches to the microbial ecology of food fermentations. BMB Rep. 2012, 45:377-389.
    • (2012) BMB Rep. , vol.45 , pp. 377-389
    • Bokulich, N.A.1    Mills, D.A.2
  • 9
    • 79952183469 scopus 로고    scopus 로고
    • Simplification of a complex microbial antilisterial consortium to evaluate the contribution of its flora in uncooked pressed cheese
    • Callon C., Saubusse M., Didienne R., Buchin S., Montel M.-C. Simplification of a complex microbial antilisterial consortium to evaluate the contribution of its flora in uncooked pressed cheese. Int. J. Food Microbiol. 2011, 145:379-389.
    • (2011) Int. J. Food Microbiol. , vol.145 , pp. 379-389
    • Callon, C.1    Saubusse, M.2    Didienne, R.3    Buchin, S.4    Montel, M.-C.5
  • 10
    • 0001463548 scopus 로고
    • Non-parametric estimation of the number of classes in a population
    • Chao A. Non-parametric estimation of the number of classes in a population. Scand. J. Stat. 1984, 11:265-270.
    • (1984) Scand. J. Stat. , vol.11 , pp. 265-270
    • Chao, A.1
  • 11
    • 84945495487 scopus 로고
    • Estimating the number of classes via sample coverage
    • Chao A., Lee S.-M. Estimating the number of classes via sample coverage. J. Am. Stat. Assoc. 1992, 87:210-217.
    • (1992) J. Am. Stat. Assoc. , vol.87 , pp. 210-217
    • Chao, A.1    Lee, S.-M.2
  • 12
    • 0142260532 scopus 로고    scopus 로고
    • Lipolysis and free fatty acid catabolism in cheese: a review of current knowledge
    • Collins Y.F., McSweeney P.L.H., Wilkinson M.G. Lipolysis and free fatty acid catabolism in cheese: a review of current knowledge. Int. Dairy J. 2003, 13:841-866.
    • (2003) Int. Dairy J. , vol.13 , pp. 841-866
    • Collins, Y.F.1    McSweeney, P.L.H.2    Wilkinson, M.G.3
  • 14
    • 84896098847 scopus 로고    scopus 로고
    • A selected core microbiome drives the early stages of three popular Italian cheese manufactures
    • De Filippis F., La Storia A., Stellato G., Gatti M., Ercolini D. A selected core microbiome drives the early stages of three popular Italian cheese manufactures. PLoS ONE 2014, 9(2):e89680. 10.1371/journal.pone.0089680.
    • (2014) PLoS ONE , vol.9 , Issue.2 , pp. e89680
    • De Filippis, F.1    La Storia, A.2    Stellato, G.3    Gatti, M.4    Ercolini, D.5
  • 15
    • 79961121259 scopus 로고    scopus 로고
    • Bifidobacterium pseudolongum are efficient indicators of animal fecal contamination in raw milk cheese industry
    • Delcenserie V., Gavini F., China B., Daube G. Bifidobacterium pseudolongum are efficient indicators of animal fecal contamination in raw milk cheese industry. BMC Microbiol. 2011, 11:178-186.
    • (2011) BMC Microbiol. , vol.11 , pp. 178-186
    • Delcenserie, V.1    Gavini, F.2    China, B.3    Daube, G.4
  • 17
    • 84877133975 scopus 로고    scopus 로고
    • High-throughput sequencing and metagenomics: moving forward in the culture-independent analysis of food microbial ecology
    • Ercolini D. High-throughput sequencing and metagenomics: moving forward in the culture-independent analysis of food microbial ecology. Appl. Environ. Microbiol. 2013, 79:3148-3155.
    • (2013) Appl. Environ. Microbiol. , vol.79 , pp. 3148-3155
    • Ercolini, D.1
  • 18
    • 84868610117 scopus 로고    scopus 로고
    • "Remake" by high-throughput sequencing of the microbiota involved in the production of water buffalo Mozzarella cheese
    • Ercolini D., De Filippis F., La Storia A., Iacono M. "Remake" by high-throughput sequencing of the microbiota involved in the production of water buffalo Mozzarella cheese. Appl. Environ. Microbiol. 2012, 22:8142-8145.
    • (2012) Appl. Environ. Microbiol. , vol.22 , pp. 8142-8145
    • Ercolini, D.1    De Filippis, F.2    La Storia, A.3    Iacono, M.4
  • 19
    • 0026681074 scopus 로고
    • Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data
    • Excoffier L., Smouse P.E., Quattro J.M. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 1992, 131:479-491.
    • (1992) Genetics , vol.131 , pp. 479-491
    • Excoffier, L.1    Smouse, P.E.2    Quattro, J.M.3
  • 20
    • 84894236903 scopus 로고    scopus 로고
    • Evaluation of denaturating gel electrophoresis (DGGE) used to describe structure of bacterial communities in Istrian cheese
    • Fuka M.M., Radl V., Matijasic B.B., Schloter M. Evaluation of denaturating gel electrophoresis (DGGE) used to describe structure of bacterial communities in Istrian cheese. Afr. J. Biotechnol. 2012, 11:16650-16654.
    • (2012) Afr. J. Biotechnol. , vol.11 , pp. 16650-16654
    • Fuka, M.M.1    Radl, V.2    Matijasic, B.B.3    Schloter, M.4
  • 21
    • 84894241582 scopus 로고    scopus 로고
    • Dynamics of bacterial communities during the ripening process of different Croatian cheese types derived from raw ewe's milk cheeses
    • Fuka M.M., Wallisch S., Engel M., Welzi G., Havranek J., Schloter M. Dynamics of bacterial communities during the ripening process of different Croatian cheese types derived from raw ewe's milk cheeses. PLoS One 2013, 8:e80734. 10.1371/journal.pone.0080734.
    • (2013) PLoS One , vol.8 , pp. e80734
    • Fuka, M.M.1    Wallisch, S.2    Engel, M.3    Welzi, G.4    Havranek, J.5    Schloter, M.6
  • 22
    • 62249209472 scopus 로고    scopus 로고
    • Study of microbial diversity in raw milk and fresh curd Fontina cheese production by culture-independent methods
    • Giannino M.L., Marzotto M., Dellaglio F., Feligni M. Study of microbial diversity in raw milk and fresh curd Fontina cheese production by culture-independent methods. Int. J. Food Microbiol. 2009, 130:188-195.
    • (2009) Int. J. Food Microbiol. , vol.130 , pp. 188-195
    • Giannino, M.L.1    Marzotto, M.2    Dellaglio, F.3    Feligni, M.4
  • 23
    • 0000803388 scopus 로고
    • The population frequencies of species and the estimation of population parameters
    • Good I.J. The population frequencies of species and the estimation of population parameters. Biometrika 1953, 40:237-264.
    • (1953) Biometrika , vol.40 , pp. 237-264
    • Good, I.J.1
  • 24
    • 36649016035 scopus 로고    scopus 로고
    • Culturable psychrotrophic bacterial communities in raw milk and their proteolytic and lipolytic traits
    • Hantsis-Zacharov E., Halpern M. Culturable psychrotrophic bacterial communities in raw milk and their proteolytic and lipolytic traits. Appl. Environ. Microbiol. 2007, 73:7162-7168.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 7162-7168
    • Hantsis-Zacharov, E.1    Halpern, M.2
  • 25
    • 84907968062 scopus 로고    scopus 로고
    • Produtos tradicionais com nomes protegidos. Apresentação e análise de dados sobre produção, preços e comercialização
    • Institute for Rural Development and Hydraulics
    • IDRHa Produtos tradicionais com nomes protegidos. Apresentação e análise de dados sobre produção, preços e comercialização. Report of the Portuguese Ministry for Agriculture, Rural Development and Fisheries 2001, Institute for Rural Development and Hydraulics.
    • (2001) Report of the Portuguese Ministry for Agriculture, Rural Development and Fisheries
  • 27
    • 75149183535 scopus 로고    scopus 로고
    • Prevalence and sources of cheese contamination with pathogens at farm and processing levels
    • Kousta M., Mataragas M., Skandamis P., Drosinos E.H. Prevalence and sources of cheese contamination with pathogens at farm and processing levels. Food Control 2010, 21:805-815.
    • (2010) Food Control , vol.21 , pp. 805-815
    • Kousta, M.1    Mataragas, M.2    Skandamis, P.3    Drosinos, E.H.4
  • 29
    • 1042290278 scopus 로고    scopus 로고
    • Lactic acid bacteria as functional starter cultures for the food fermentation industry
    • Leroy F., De Vuyst L. Lactic acid bacteria as functional starter cultures for the food fermentation industry. Trends Food Sci. Technol. 2004, 15:67-78.
    • (2004) Trends Food Sci. Technol. , vol.15 , pp. 67-78
    • Leroy, F.1    De Vuyst, L.2
  • 30
    • 84868315308 scopus 로고    scopus 로고
    • Characterization of microflora in Latin-style cheeses by next-generation sequencing technology
    • Lusk T.S., Ottesen T.S., White J.R., Allard M.W., Brown E.W., Kase J.A. Characterization of microflora in Latin-style cheeses by next-generation sequencing technology. BMC Microbiol. 2012, 12:254-263.
    • (2012) BMC Microbiol. , vol.12 , pp. 254-263
    • Lusk, T.S.1    Ottesen, T.S.2    White, J.R.3    Allard, M.W.4    Brown, E.W.5    Kase, J.A.6
  • 31
    • 84872450065 scopus 로고    scopus 로고
    • Identification of the Enterobacteriaceae in Montasio cheese and assessment of their amino acid decarboxylase activity
    • Maifreni M., Frigo F., Bartolomeoli I., Innocente N., Biasutti M., Marino M. Identification of the Enterobacteriaceae in Montasio cheese and assessment of their amino acid decarboxylase activity. J. Dairy Res. 2013, 80:122-127.
    • (2013) J. Dairy Res. , vol.80 , pp. 122-127
    • Maifreni, M.1    Frigo, F.2    Bartolomeoli, I.3    Innocente, N.4    Biasutti, M.5    Marino, M.6
  • 32
    • 0036324293 scopus 로고    scopus 로고
    • Phylogenetic approaches for describing and comparing the diversity of microbial communities
    • Martin A.P. Phylogenetic approaches for describing and comparing the diversity of microbial communities. Appl. Environ. Microbiol. 2002, 68:3673-3682.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 3673-3682
    • Martin, A.P.1
  • 33
    • 78651426431 scopus 로고    scopus 로고
    • Characterization of bacterial populations in Danish raw milk cheeses made with different starter cultures by denaturating gradient gel electrophoresis and pyrosequencing
    • Masoud W., Takamiya M., Vogensen F.K., Lillevang S., Al-Soud W.A., Sorensen S.J., Jakobsen M. Characterization of bacterial populations in Danish raw milk cheeses made with different starter cultures by denaturating gradient gel electrophoresis and pyrosequencing. Int. Dairy J. 2011, 21:142-148.
    • (2011) Int. Dairy J. , vol.21 , pp. 142-148
    • Masoud, W.1    Takamiya, M.2    Vogensen, F.K.3    Lillevang, S.4    Al-Soud, W.A.5    Sorensen, S.J.6    Jakobsen, M.7
  • 34
    • 2442666400 scopus 로고    scopus 로고
    • Biochemistry of cheese ripening
    • McSweeney P.L.H. Biochemistry of cheese ripening. Int. J. Dairy Technol. 2004, 57:127-144.
    • (2004) Int. J. Dairy Technol. , vol.57 , pp. 127-144
    • McSweeney, P.L.H.1
  • 37
    • 33746102645 scopus 로고    scopus 로고
    • Starter cultures: general aspects
    • Elsevier Academic Press, London, UK, P.F. Fox, P.L.H. McSweeney, T.M. Cogan, T.M. Guinee (Eds.)
    • Parente E., Cogan T.M. Starter cultures: general aspects. Cheese: Chemistry, Physics and Microbiology 2004, vol. 1:123-147. Elsevier Academic Press, London, UK. P.F. Fox, P.L.H. McSweeney, T.M. Cogan, T.M. Guinee (Eds.).
    • (2004) Cheese: Chemistry, Physics and Microbiology , vol.1 , pp. 123-147
    • Parente, E.1    Cogan, T.M.2
  • 38
    • 33846591068 scopus 로고    scopus 로고
    • Dipping into the rare biosphere
    • Pedrós-Alió C. Dipping into the rare biosphere. Science 2007, 315:192-193.
    • (2007) Science , vol.315 , pp. 192-193
    • Pedrós-Alió, C.1
  • 39
    • 19744377127 scopus 로고    scopus 로고
    • Exploiting the potential of bacteria in the cheese ecosystem
    • Peláez C., Requena T. Exploiting the potential of bacteria in the cheese ecosystem. Int. Dairy J. 2005, 15:831-844.
    • (2005) Int. Dairy J. , vol.15 , pp. 831-844
    • Peláez, C.1    Requena, T.2
  • 40
    • 84866184346 scopus 로고    scopus 로고
    • High-throughput sequencing for detection of subpopulations of bacteria not previously associated with artisanal cheeses
    • Quigley L., O'Sullivan O., Beresford T.P., Ross R.P., Fitzgerald G.F., Cotter P.D. High-throughput sequencing for detection of subpopulations of bacteria not previously associated with artisanal cheeses. Appl. Environ. Microbiol. 2012, 78:5717-5723.
    • (2012) Appl. Environ. Microbiol. , vol.78 , pp. 5717-5723
    • Quigley, L.1    O'Sullivan, O.2    Beresford, T.P.3    Ross, R.P.4    Fitzgerald, G.F.5    Cotter, P.D.6
  • 41
    • 33646456338 scopus 로고    scopus 로고
    • Artisanal and experimental Pecorino Siciliano cheese: microbial dynamics during manufacture assessed by culturing and PCR-DGGE analyses
    • Randazzo C., Vaughan E.E., Caggia C. Artisanal and experimental Pecorino Siciliano cheese: microbial dynamics during manufacture assessed by culturing and PCR-DGGE analyses. Int. J. Food Microbiol. 2006, 109:1-8.
    • (2006) Int. J. Food Microbiol. , vol.109 , pp. 1-8
    • Randazzo, C.1    Vaughan, E.E.2    Caggia, C.3
  • 43
    • 40249113895 scopus 로고    scopus 로고
    • Evaluating different approaches that test whether microbial communities have the same structure
    • Schloss P.D. Evaluating different approaches that test whether microbial communities have the same structure. ISME J. 2008, 2:265-275.
    • (2008) ISME J. , vol.2 , pp. 265-275
    • Schloss, P.D.1
  • 44
    • 79958196766 scopus 로고    scopus 로고
    • Assessing and improving methods used in operational taxonomic unit-based approaches for 16S rRNA gene sequence analysis
    • Schloss P.D., Westcott S.L. Assessing and improving methods used in operational taxonomic unit-based approaches for 16S rRNA gene sequence analysis. Appl. Environ. Microbiol. 2011, 77:3219-3226.
    • (2011) Appl. Environ. Microbiol. , vol.77 , pp. 3219-3226
    • Schloss, P.D.1    Westcott, S.L.2
  • 46
    • 83355173006 scopus 로고    scopus 로고
    • Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies
    • Schloss P.D., Gevers D., Westcott S.L. Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies. PLoS ONE 2011, 6:e27310. 10.1371/journal.pone.0027310.
    • (2011) PLoS ONE , vol.6 , pp. e27310
    • Schloss, P.D.1    Gevers, D.2    Westcott, S.L.3
  • 47
    • 84856043672 scopus 로고
    • A mathematical theory of communication
    • 379-423-623-656
    • Shannon C.E. A mathematical theory of communication. Bell Syst. Tech. J. 1948, 27:379-423-623-656.
    • (1948) Bell Syst. Tech. J. , vol.27
    • Shannon, C.E.1
  • 48
    • 84875855800 scopus 로고    scopus 로고
    • Cheese avoidance of gas blowing
    • Academic Press, San Diego, W.F. John (Ed.)
    • Sheehan J.J. Cheese avoidance of gas blowing. Encyclopedia of Dairy Sciences 2011, 661-666. Academic Press, San Diego. 2nd Edn. W.F. John (Ed.).
    • (2011) Encyclopedia of Dairy Sciences , pp. 661-666
    • Sheehan, J.J.1
  • 49
    • 33344464667 scopus 로고
    • Measurement of diversity
    • Simpson E.H. Measurement of diversity. Nature 1949, 163:688.
    • (1949) Nature , vol.163 , pp. 688
    • Simpson, E.H.1
  • 50
    • 84867415227 scopus 로고    scopus 로고
    • Phenotypic and genotypic characterization of indigenous Lactobacillus community from traditional Istrian ewe's cheese
    • Skelin A., Fuka M.M., Majhenic C.A., Redzepovic S., Samarzija D., Matijasic B.B. Phenotypic and genotypic characterization of indigenous Lactobacillus community from traditional Istrian ewe's cheese. Food Technol. Biotechnol. 2012, 50:362-370.
    • (2012) Food Technol. Biotechnol. , vol.50 , pp. 362-370
    • Skelin, A.1    Fuka, M.M.2    Majhenic, C.A.3    Redzepovic, S.4    Samarzija, D.5    Matijasic, B.B.6
  • 52
    • 0030026547 scopus 로고    scopus 로고
    • Assessing population genetic structure and variability with RAPD data: application to Vaccinium macrocarpon (American Cranberry)
    • Stewart C.N., Excoffier L. Assessing population genetic structure and variability with RAPD data: application to Vaccinium macrocarpon (American Cranberry). J. Evol. Biol. 1996, 9:153-171.
    • (1996) J. Evol. Biol. , vol.9 , pp. 153-171
    • Stewart, C.N.1    Excoffier, L.2
  • 54
    • 70350527180 scopus 로고    scopus 로고
    • Conservative fragments in bacterial 16S rRNA genes and primer design for 16S ribosomal DNA amplicons in metagenomic studies
    • Wang Y., Qian P.-Y. Conservative fragments in bacterial 16S rRNA genes and primer design for 16S ribosomal DNA amplicons in metagenomic studies. PLoS ONE 2009, 4:e7401. 10.1371/journal.pone.0007401.
    • (2009) PLoS ONE , vol.4 , pp. e7401
    • Wang, Y.1    Qian, P.-Y.2
  • 55
    • 66249145772 scopus 로고    scopus 로고
    • Statistical methods for detecting differentially abundant features in clinical metagenomic samples
    • White J.R., Nagarajan N., Pop M. Statistical methods for detecting differentially abundant features in clinical metagenomic samples. PLoS Comput. Biol. 2009, 5:e1000352. 10.1371/journal.pcbi.1000352.
    • (2009) PLoS Comput. Biol. , vol.5 , pp. e1000352
    • White, J.R.1    Nagarajan, N.2    Pop, M.3


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