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Volumn 10, Issue 3, 2015, Pages

Erratum: AGAPE (Automated Genome Analysis PipelinE) for Pan-Genome analysis of saccharomyces cerevisiae (PLoS ONE (2015) 10:3 (e0120671) DOI:10.1371/journal.pone.0120671);AGAPE (Automated Genome Analysis PipelinE) for pan-genome analysis of Saccharomyces cerevisiae

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER ANALYSIS; COMPUTER PROGRAM; CONTROLLED STUDY; FUNGAL GENOME; FUNGAL STRAIN; GENE FUNCTION; GENE IDENTIFICATION; GENE SEQUENCE; GENETIC ASSOCIATION; GENETIC VARIABILITY; GENOME ANALYSIS; GENOME ANNOTATION; GENOME ASSEMBLY; HIGH THROUGHPUT SEQUENCING; MOLECULAR EVOLUTION; NONHUMAN; OPEN READING FRAME; PHENOTYPIC VARIATION; PROCESS DEVELOPMENT; SACCHAROMYCES CEREVISIAE; SINGLE NUCLEOTIDE POLYMORPHISM; CONTIG MAPPING; DNA SEQUENCE; GENETICS; PROCEDURES; SOFTWARE;

EID: 84925014437     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0129184     Document Type: Erratum
Times cited : (55)

References (60)
  • 2
    • 4944245629 scopus 로고    scopus 로고
    • Population genetic variation in gene expression is associated with phenotypic variation in Saccharomyces cerevisiae
    • PMID: 15059259
    • Fay J, McCullough H, Sniegowski P, Michael B. Population genetic variation in gene expression is associated with phenotypic variation in Saccharomyces cerevisiae. Genome Biol 2004; 5: R26. PMID: 15059259
    • (2004) Genome Biol , vol.5 , pp. R26
    • Fay, J.1    McCullough, H.2    Sniegowski, P.3    Michael, B.4
  • 3
    • 50849102293 scopus 로고    scopus 로고
    • A catalog of neutral and deleterious polymorphism in yeast
    • PMID: 18769710
    • Doniger S, Kim H, Swain D, Corcuera D, Williams M. A catalog of neutral and deleterious polymorphism in yeast. PLoS Genet 2008; 4(8): e1000183. doi: 10.1371/journal.pgen.1000183 PMID: 18769710
    • (2008) PLoS Genet , vol.4 , Issue.8 , pp. e1000183
    • Doniger, S.1    Kim, H.2    Swain, D.3    Corcuera, D.4    Williams, M.5
  • 4
    • 0036224204 scopus 로고    scopus 로고
    • Saccharomyces cerevisiae and Saccharomyces paradoxus coexist in a natural woodland site in North America and display different levels of reproductive isolation from European conspecifics
    • PMID: 12702333
    • Sniegowski P, Dombrowski P, Fingerman E. Saccharomyces cerevisiae and Saccharomyces paradoxus coexist in a natural woodland site in North America and display different levels of reproductive isolation from European conspecifics. FEMS Yeast Res 2002; 1: 299-306. PMID: 12702333
    • (2002) FEMS Yeast Res , vol.1 , pp. 299-306
    • Sniegowski, P.1    Dombrowski, P.2    Fingerman, E.3
  • 5
    • 0036796474 scopus 로고    scopus 로고
    • Molecular characterization of a chromosomal rearrangement involved in the adaptive evolution of yeast strains
    • Perez-Ortin J, Querol A, Puig S, Barrio E. Molecular characterization of a chromosomal rearrangement involved in the adaptive evolution of yeast strains. Genome Res 2002; 12: 15331539.
    • (2002) Genome Res , vol.12 , pp. 15331539
    • Perez-Ortin, J.1    Querol, A.2    Puig, S.3    Barrio, E.4
  • 6
    • 73249135142 scopus 로고    scopus 로고
    • Genome structure of a Saccharomyces cerevisiae strain widely used in bioethanol production
    • PMID: 19812109
    • Argueso J, Carazzolle M, Mieczkowski P, Duarte F, Netto O, Missawa S, et al. Genome structure of a Saccharomyces cerevisiae strain widely used in bioethanol production. Genome Res 2009; 19: 2258-2270. doi: 10.1101/gr.091777.109 PMID: 19812109
    • (2009) Genome Res , vol.19 , pp. 2258-2270
    • Argueso, J.1    Carazzolle, M.2    Mieczkowski, P.3    Duarte, F.4    Netto, O.5    Missawa, S.6
  • 7
    • 70349515584 scopus 로고    scopus 로고
    • Eukaryote-to-eukaryote gene transfer events revealed by the genome sequence of the wine yeast Saccharomyces cerevisiae EC1118
    • PMID: 19805302
    • Novo M, Bigey F, Beyne E, Galeote V, Gavory F, Mallet S, et al. Eukaryote-to-eukaryote gene transfer events revealed by the genome sequence of the wine yeast Saccharomyces cerevisiae EC1118. Proc Natl Acad Sci USA 2009; 106(38): 16333-16338. doi: 10.1073/pnas.0904673106 PMID: 19805302
    • (2009) Proc Natl Acad Sci USA , vol.106 , Issue.38 , pp. 16333-16338
    • Novo, M.1    Bigey, F.2    Beyne, E.3    Galeote, V.4    Gavory, F.5    Mallet, S.6
  • 8
    • 79952262678 scopus 로고    scopus 로고
    • Whole-genome comparison reveals novel genetic elements that characterize the genome of industrial strains of Saccharomyces cerevisiae
    • PMID: 21304888
    • Borneman A, Desany B, Riches D, Affourtit J, Forgan A, Pretorius I, et al. Whole-genome comparison reveals novel genetic elements that characterize the genome of industrial strains of Saccharomyces cerevisiae. PLoS Genet 2011; 7(2): e1001287. doi: 10.1371/journal.pgen.1001287 PMID: 21304888
    • (2011) PLoS Genet , vol.7 , Issue.2 , pp. e1001287
    • Borneman, A.1    Desany, B.2    Riches, D.3    Affourtit, J.4    Forgan, A.5    Pretorius, I.6
  • 9
    • 82255194233 scopus 로고    scopus 로고
    • Whole-genome sequencing of saké yeast Saccharomyces cerevisiae kyokai no. 7
    • PMID: 21900213
    • Akao T, Yashiro I, Hosoyama A, Kitagaki H, Horikawa H, Watanabe D, et al. Whole-genome sequencing of saké yeast Saccharomyces cerevisiae kyokai no. 7. DNA Res 2011; 18(6): 423-434. doi: 10.1093/dnares/dsr029 PMID: 21900213
    • (2011) DNA Res , vol.18 , Issue.6 , pp. 423-434
    • Akao, T.1    Yashiro, I.2    Hosoyama, A.3    Kitagaki, H.4    Horikawa, H.5    Watanabe, D.6
  • 12
    • 84858588614 scopus 로고    scopus 로고
    • Saccharomyces Genome Database: The genomics resource of budding yeast
    • PMID: 22110037
    • Cherry J, Hong E, Amundsen C, Balakrishnan R, Binkley G, Chan E, et al. Saccharomyces Genome Database: the genomics resource of budding yeast. Nucleic Acids Res 2012; 40: D700-705. doi: 10.1093/nar/gkr1029 PMID: 22110037
    • (2012) Nucleic Acids Res , vol.40 , pp. D700-D705
    • Cherry, J.1    Hong, E.2    Amundsen, C.3    Balakrishnan, R.4    Binkley, G.5    Chan, E.6
  • 13
    • 81255197643 scopus 로고    scopus 로고
    • Yeast: An experimental organism for 21st century biology
    • PMID: 22084421
    • st century biology. Genetics 2011; 189: 695-704. doi: 10.1534/genetics.111.130765 PMID: 22084421
    • (2011) Genetics , vol.189 , pp. 695-704
    • Botstein, D.1    Fink, G.2
  • 14
    • 63049138461 scopus 로고    scopus 로고
    • Sequencing the species pan-genome
    • PMID: 19287447
    • Bentley S. Sequencing the species pan-genome. Nat Rev Microbiol 2009; 7(4): 258-9. doi: 10.1038/nrmicro2123 PMID: 19287447
    • (2009) Nat Rev Microbiol , vol.7 , Issue.4 , pp. 258-259
    • Bentley, S.1
  • 15
    • 84856571322 scopus 로고    scopus 로고
    • PGAP: Pan-genomes analysis pipeline
    • PMID: 22130594
    • Zhao Y, Wu J, Yang J, Sun S, Xiao J, Yu J. PGAP: pan-genomes analysis pipeline. Bioinformatics 2012; 28(3): 416-8. doi: 10.1093/bioinformatics/btr655 PMID: 22130594
    • (2012) Bioinformatics , vol.28 , Issue.3 , pp. 416-418
    • Zhao, Y.1    Wu, J.2    Yang, J.3    Sun, S.4    Xiao, J.5    Yu, J.6
  • 16
    • 84880511242 scopus 로고    scopus 로고
    • Pan genome of the phytoplankton Emiliania underpins its global distribution
    • PMID: 23760476
    • Read B, Kegel J, Klute M, Kuo A, Lefebvre S, Maumus F, et al. Pan genome of the phytoplankton Emiliania underpins its global distribution. Nature 2013; 499: 209-213. doi: 10.1038/nature12221 PMID: 23760476
    • (2013) Nature , vol.499 , pp. 209-213
    • Read, B.1    Kegel, J.2    Klute, M.3    Kuo, A.4    Lefebvre, S.5    Maumus, F.6
  • 17
    • 84897883016 scopus 로고    scopus 로고
    • A high-definition view of functional genetic variation from natural yeast genomes
    • PMID: 24425782
    • Bergstrom A, Simpson J, Salinas F, Barre B, Parts L, Zia A, et al. A high-definition view of functional genetic variation from natural yeast genomes. Mol Biol Evol 2014; 31(4): 872-888. doi: 10.1093/molbev/msu037 PMID: 24425782
    • (2014) Mol Biol Evol , vol.31 , Issue.4 , pp. 872-888
    • Bergstrom, A.1    Simpson, J.2    Salinas, F.3    Barre, B.4    Parts, L.5    Zia, A.6
  • 18
    • 33644770200 scopus 로고    scopus 로고
    • Negative epistasis between natural variants of the Saccharomyces cerevisiae MLH1 and PMS1 genes results in a defect in mismatch repair
    • PMID: 16492773
    • Heck J, Argueso J, Gemici Z, Reeves R, Bernard A, Aquadro C, et al. Negative epistasis between natural variants of the Saccharomyces cerevisiae MLH1 and PMS1 genes results in a defect in mismatch repair. Proc Natl Acad Sci U S A 2006; 103(9):3256-61. PMID: 16492773
    • (2006) Proc Natl Acad Sci U S A , vol.103 , Issue.9 , pp. 3256-3261
    • Heck, J.1    Argueso, J.2    Gemici, Z.3    Reeves, R.4    Bernard, A.5    Aquadro, C.6
  • 20
    • 0016374946 scopus 로고
    • Carbohydrate metabolism during ascospore development in yeast
    • PMID: 4595206
    • Kane S, Roth R. Carbohydrate metabolism during ascospore development in yeast. J Bacteriol 1974; 118(1):8-14. PMID: 4595206
    • (1974) J Bacteriol , vol.118 , Issue.1 , pp. 8-14
    • Kane, S.1    Roth, R.2
  • 21
    • 0034098222 scopus 로고    scopus 로고
    • Breeding of ethanol tolerant saké yeasts from Kl killer-resistant mutants
    • Nitta A, Uchiyama H, Imamura T. Breeding of ethanol tolerant saké yeasts from Kl killer-resistant mutants. Seibutsu-kogaku 2000; 78:77-81.
    • (2000) Seibutsu-kogaku , vol.78 , pp. 77-81
    • Nitta, A.1    Uchiyama, H.2    Imamura, T.3
  • 22
    • 0028794516 scopus 로고
    • Construction of a set of convenient Saccharomyces cerevisiae strains that are isogenic to S288C
    • PMID: 7762301
    • Winston F, Dollard C, Ricupero-Hovasse L. Construction of a set of convenient Saccharomyces cerevisiae strains that are isogenic to S288C. Yeast 1995; 11(1):53-5. PMID: 7762301
    • (1995) Yeast , vol.11 , Issue.1 , pp. 53-55
    • Winston, F.1    Dollard, C.2    Ricupero-Hovasse, L.3
  • 23
    • 0024669291 scopus 로고
    • A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae
    • PMID: 2659436
    • Sikorski R, Hieter P. A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. Genetics 1989; 122(1):19-27. PMID: 2659436
    • (1989) Genetics , vol.122 , Issue.1 , pp. 19-27
    • Sikorski, R.1    Hieter, P.2
  • 24
    • 0028558805 scopus 로고
    • Genome renewal: A new phenomenon revealed from a genetic study of 43 strains of Saccharomyces cerevisiae derived from natural fermentation of grape musts
    • PMID: 7725789
    • Mortimer R, Romano P, Suzzi G, Polsinelli M. Genome renewal: a new phenomenon revealed from a genetic study of 43 strains of Saccharomyces cerevisiae derived from natural fermentation of grape musts. 1994;Yeast 10(12):1543-52. PMID: 7725789
    • (1994) Yeast , vol.10 , Issue.12 , pp. 1543-1552
    • Mortimer, R.1    Romano, P.2    Suzzi, G.3    Polsinelli, M.4
  • 25
    • 0034829873 scopus 로고    scopus 로고
    • Existence of a tightly regulated water channel in Saccharomyces cerevisiae
    • PMID: 11168368
    • Meyrial V, Laize V, Gobin R, Ripoche P, Hohmann S, Tacnet F. Existence of a tightly regulated water channel in Saccharomyces cerevisiae. Eur J Biochem 2001; 268(2):334-43. PMID: 11168368
    • (2001) Eur J Biochem , vol.268 , Issue.2 , pp. 334-343
    • Meyrial, V.1    Laize, V.2    Gobin, R.3    Ripoche, P.4    Hohmann, S.5    Tacnet, F.6
  • 26
    • 0041592490 scopus 로고    scopus 로고
    • Investigations into the polymorphisms at the ECM38 locus of two widely used Saccharomyces cerevisiae S288C strains, YPH499 and BY4742
    • PMID: 12868055
    • Kumar C, Sharma R, Bachhawat A. Investigations into the polymorphisms at the ECM38 locus of two widely used Saccharomyces cerevisiae S288C strains, YPH499 and BY4742. Yeast 2003; 20(10):857-63. PMID: 12868055
    • (2003) Yeast , vol.20 , Issue.10 , pp. 857-863
    • Kumar, C.1    Sharma, R.2    Bachhawat, A.3
  • 27
    • 0032579440 scopus 로고    scopus 로고
    • Designer deletion strains derived from Saccharomyces cerevisiae S288C: A useful set of strains and plasmids for PCR-mediated gene disruption and other applications
    • PMID: 9483801
    • Brachmann C, Davies A, Cost G, Caputo E, Li J, Hieter P, et al. Designer deletion strains derived from Saccharomyces cerevisiae S288C: a useful set of strains and plasmids for PCR-mediated gene disruption and other applications. Yeast 1998; 14(2):115-32. PMID: 9483801
    • (1998) Yeast , vol.14 , Issue.2 , pp. 115-132
    • Brachmann, C.1    Davies, A.2    Cost, G.3    Caputo, E.4    Li, J.5    Hieter, P.6
  • 28
    • 0014264167 scopus 로고
    • Regulation of pyrimidine biosynthesis in Saccharomyces cerevisiae
    • PMID: 5651325
    • Lacroute F. Regulation of pyrimidine biosynthesis in Saccharomyces cerevisiae. J Bacteriol 1968; 95(3):824-32. PMID: 5651325
    • (1968) J Bacteriol , vol.95 , Issue.3 , pp. 824-832
    • Lacroute, F.1
  • 29
    • 20444437195 scopus 로고    scopus 로고
    • ACE2, CBK1, and BUD4 in budding and cell separation
    • PMID: 15947194
    • Voth W, Olsen A, Sbia M, Freedman K, Stillman D. ACE2, CBK1, and BUD4 in budding and cell separation. Eukaryot Cell 2005; 4(6):1018-28. PMID: 15947194
    • (2005) Eukaryot Cell , vol.4 , Issue.6 , pp. 1018-1028
    • Voth, W.1    Olsen, A.2    Sbia, M.3    Freedman, K.4    Stillman, D.5
  • 30
    • 0034214335 scopus 로고    scopus 로고
    • An interlaboratory comparison of physiological and genetic properties of four Saccharomyces cerevisiae strains
    • PMID: 10793209
    • van Dijken J, Bauer J, Brambilla L, Duboc P, Francois J, Gancedo C, et al. An interlaboratory comparison of physiological and genetic properties of four Saccharomyces cerevisiae strains. Enzyme Microb Technol 2000; 26(9-10):706-714. PMID: 10793209
    • (2000) Enzyme Microb Technol , vol.26 , Issue.9-10 , pp. 706-714
    • Van Dijken, J.1    Bauer, J.2    Brambilla, L.3    Duboc, P.4    Francois, J.5    Gancedo, C.6
  • 31
    • 0023739386 scopus 로고
    • Protein sorting in Saccharomyces cerevisiae: Isolation of mutants defective in the delivery and processing of multiple vacuolar hydrolases
    • PMID: 3062374
    • Robinson JS, Klionsky DJ, Banta LM, Emr SD. Protein sorting in Saccharomyces cerevisiae: isolation of mutants defective in the delivery and processing of multiple vacuolar hydrolases. Mol Cell Biol 1988; 8(11):4936-48. PMID: 3062374
    • (1988) Mol Cell Biol , vol.8 , Issue.11 , pp. 4936-4948
    • Robinson, J.S.1    Klionsky, D.J.2    Banta, L.M.3    Emr, S.D.4
  • 32
    • 0022504637 scopus 로고
    • Genealogy of principal strains of the yeast genetic stock center
    • PMID: 3519363
    • Mortimer R, Johnston J. Genealogy of principal strains of the yeast genetic stock center. Genetics 1986; 113(1):35-43. PMID: 3519363
    • (1986) Genetics , vol.113 , Issue.1 , pp. 35-43
    • Mortimer, R.1    Johnston, J.2
  • 33
    • 1842342028 scopus 로고
    • Respiration-deficient mutants of yeast
    • PMID: 13977171
    • Sherman F. Respiration-deficient mutants of yeast. Genetics 1963; 48:375-385. PMID: 13977171
    • (1963) Genetics , vol.48 , pp. 375-385
    • Sherman, F.1
  • 34
    • 0025776523 scopus 로고
    • Targets for cell cycle arrest by the immunosuppressant rapamycin in yeast
    • PMID: 1715094
    • Heitman J, Movva NR, Hall MN. Targets for cell cycle arrest by the immunosuppressant rapamycin in yeast. Science 1991; 253(5022):905-9. PMID: 1715094
    • (1991) Science , vol.253 , Issue.5022 , pp. 905-909
    • Heitman, J.1    Movva, N.R.2    Hall, M.N.3
  • 35
    • 84857838310 scopus 로고    scopus 로고
    • Efficient de novo assembly of large genomes using compressed data structures
    • PMID: 22156294
    • Simpson J, Durbin R. Efficient de novo assembly of large genomes using compressed data structures. Genome Res 2012; 22: 549-556. doi: 10.1101/gr.126953.111 PMID: 22156294
    • (2012) Genome Res , vol.22 , pp. 549-556
    • Simpson, J.1    Durbin, R.2
  • 36
    • 84857893016 scopus 로고    scopus 로고
    • GAGE: A critical evaluation of genome assemblies and assembly algorithms
    • PMID: 22147368
    • Salzberg S, Phillippy2 A, Zimin3 A, Puiu1 D, Magoc T, Koren S, et al. GAGE: A critical evaluation of genome assemblies and assembly algorithms. Genome Res 2012; 22: 557-567. doi: 10.1101/gr.131383.111 PMID: 22147368
    • (2012) Genome Res , vol.22 , pp. 557-567
    • Salzberg, S.1    Phillippy, A.2    Zimin, A.3    Puiu, D.4    Magoc, T.5    Koren, S.6
  • 37
    • 66449136667 scopus 로고    scopus 로고
    • ABYSS: A parallel assembler for short read sequence data
    • PMID: 19251739
    • Simpson J, Wong K, Jackman S, Schein J, Jones S, Birol I. ABYSS: a parallel assembler for short read sequence data. Genome Res 2009; 19(6): 1117-1123. doi: 10.1101/gr.089532.108 PMID: 19251739
    • (2009) Genome Res , vol.19 , Issue.6 , pp. 1117-1123
    • Simpson, J.1    Wong, K.2    Jackman, S.3    Schein, J.4    Jones, S.5    Birol, I.6
  • 38
    • 0141815478 scopus 로고    scopus 로고
    • Evolution's cauldron: Duplication, deletion, and rearrangement in the mouse and human genomes
    • PMID: 14500911
    • Kent W, Baertsch R, Hinrichs A, Miller W, Haussler D. Evolution's cauldron: Duplication, deletion, and rearrangement in the mouse and human genomes. Proc Natl Acad Sci USA 2003; 100(20): 11484-11489. PMID: 14500911
    • (2003) Proc Natl Acad Sci USA , vol.100 , Issue.20 , pp. 11484-11489
    • Kent, W.1    Baertsch, R.2    Hinrichs, A.3    Miller, W.4    Haussler, D.5
  • 39
    • 84864077221 scopus 로고    scopus 로고
    • Revealing mammalian evolutionary relationships by comparative analysis of gene clusters
    • Song G, Riemer C, Dickins B, Kim H, Zhang L, Zhang Y, et al. Revealing mammalian evolutionary relationships by comparative analysis of gene clusters. Genome Evol Biol 2012; 4(4): 586-601.
    • (2012) Genome Evol Biol , vol.4 , Issue.4 , pp. 586-601
    • Song, G.1    Riemer, C.2    Dickins, B.3    Kim, H.4    Zhang, L.5    Zhang, Y.6
  • 40
    • 77953826984 scopus 로고    scopus 로고
    • Ph.D. Thesis. The Pennsylvania State University Available
    • Harris R. Improved pairwise alignment of genomic DNA. Ph.D. Thesis. The Pennsylvania State University. 2007. Available: http://www.bx.psu.edu/∼rsharris/rsharris-phd-thesis-2007.pdf.
    • (2007) Improved Pairwise Alignment of Genomic DNA
    • Harris, R.1
  • 41
    • 38049057159 scopus 로고    scopus 로고
    • MAKER: An easy-to-use annotation pipeline designed for emerging model organism genomes
    • Cantarel B, Korf I, Robb S, Parra G, Ross E, Moore B, et al. MAKER: An easy-to-use annotation pipeline designed for emerging model organism genomes. Genome Res 2009; 18(1): 188-196.
    • (2009) Genome Res , vol.18 , Issue.1 , pp. 188-196
    • Cantarel, B.1    Korf, I.2    Robb, S.3    Parra, G.4    Ross, E.5    Moore, B.6
  • 42
    • 0033034668 scopus 로고    scopus 로고
    • Genome-wide bioinformatic and molecular analysis of introns in Saccharomyces cerevisiae
    • PMID: 10024174
    • Spingola S, Garte L, Haussler D, Ares M. Genome-wide bioinformatic and molecular analysis of introns in Saccharomyces cerevisiae. RNA 1999; 5: 221-234. PMID: 10024174
    • (1999) RNA , vol.5 , pp. 221-234
    • Spingola, S.1    Garte, L.2    Haussler, D.3    Ares, M.4
  • 44
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with burrows-wheeler transform
    • PMID: 19451168
    • Li H, Durbin R. Fast and accurate short read alignment with burrows-wheeler transform. Bioinformatics 2009; 25: 1754-1760. doi: 10.1093/bioinformatics/btp324 PMID: 19451168
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 45
    • 84858602406 scopus 로고    scopus 로고
    • InterPro in 2011: New developments in the family and domain prediction database
    • PMID: 22096229
    • Hunter S, Jones P, Mitchell A, Apweiler R, Attwood T, Bateman A, et al. InterPro in 2011: new developments in the family and domain prediction database. Nucleic Acids Res 2012; 40: D306-12. doi: 10.1093/nar/gkr948 PMID: 22096229
    • (2012) Nucleic Acids Res , vol.40 , pp. D306-D312
    • Hunter, S.1    Jones, P.2    Mitchell, A.3    Apweiler, R.4    Attwood, T.5    Bateman, A.6
  • 46
    • 84857956783 scopus 로고    scopus 로고
    • Detecting and annotating genetic variations using the HugeSeq pipeline
    • PMID: 22398614
    • Lam H, Pan C, Clark M, Lacroute P, Chen R, Haraksingh R, et al. Detecting and annotating genetic variations using the HugeSeq pipeline. Nat Biotechnol 2012; 30(3): 226-229. doi: 10.1038/nbt.2134 PMID: 22398614
    • (2012) Nat Biotechnol , vol.30 , Issue.3 , pp. 226-229
    • Lam, H.1    Pan, C.2    Clark, M.3    Lacroute, P.4    Chen, R.5    Haraksingh, R.6
  • 48
    • 48249102000 scopus 로고    scopus 로고
    • Phylogeny.fr: Robust phylogenetic analysis for the non-specialist
    • Web Server Issue PMID: 18424797
    • Dereeper A, Guignon V, Blanc G, Audic S, Buffet S, Chevenet F, et al. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res 2008; 36(Web Server Issue): W465-9. doi: 10.1093/nar/gkn180 PMID: 18424797
    • (2008) Nucleic Acids Res , vol.36 , pp. W465-W469
    • Dereeper, A.1    Guignon, V.2    Blanc, G.3    Audic, S.4    Buffet, S.5    Chevenet, F.6
  • 49
    • 33750482575 scopus 로고    scopus 로고
    • Saccharomyces cerevisiae S288C genome annotation: A working hypothesis
    • PMID: 17001629
    • Fisk D, Ball C, Dolinski K, Engel S, Hong E, Issel-Tarver L, et al. Saccharomyces cerevisiae S288C genome annotation: a working hypothesis. YEAST 2006; 23(12): 857-865. PMID: 17001629
    • (2006) Yeast , vol.23 , Issue.12 , pp. 857-865
    • Fisk, D.1    Ball, C.2    Dolinski, K.3    Engel, S.4    Hong, E.5    Issel-Tarver, L.6
  • 50
    • 79959847334 scopus 로고    scopus 로고
    • Trait Variation in Yeast Is Defined by Population History
    • PMID: 21698134
    • Warringer J, Zörgö E, Cubillos FA, Zia A, Gjuvsland A, Simpson J, et al. Trait Variation in Yeast Is Defined by Population History. PLoS Genet. 2011; 7(6): e1002111. doi: 10.1371/journal.pgen.1002111 PMID: 21698134
    • (2011) PLoS Genet , vol.7 , Issue.6 , pp. e1002111
    • Warringer, J.1    Zörgö, E.2    Cubillos, F.A.3    Zia, A.4    Gjuvsland, A.5    Simpson, J.6
  • 51
    • 0033529707 scopus 로고    scopus 로고
    • Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis
    • PMID: 10436161
    • Winzeler E, Shoemaker D, Astromoff A, Liang H, Anderson K, Andre B, et al. Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis. Science 1999; 285(5429):901-6. PMID: 10436161
    • (1999) Science , vol.285 , Issue.5429 , pp. 901-906
    • Winzeler, E.1    Shoemaker, D.2    Astromoff, A.3    Liang, H.4    Anderson, K.5    Andre, B.6
  • 52
    • 62649126517 scopus 로고    scopus 로고
    • Comprehensive polymorphism survey elucidates population structure of Saccharomyces cerevisiae
    • PMID: 19212320
    • Schacherer J, Shapiro J, Ruderfer D, Kruglyak L. Comprehensive polymorphism survey elucidates population structure of Saccharomyces cerevisiae. Nature Genetics 2009; 458: 342-345. doi: 10.1038/nature07670 PMID: 19212320
    • (2009) Nature Genetics , vol.458 , pp. 342-345
    • Schacherer, J.1    Shapiro, J.2    Ruderfer, D.3    Kruglyak, L.4
  • 53
    • 32044446012 scopus 로고    scopus 로고
    • Identification and characterization of a novel biotin biosynthesis gene in Saccharomyces cerevisiae
    • PMID: 16269718
    • Wu H, Ito K, Shimoi H. Identification and characterization of a novel biotin biosynthesis gene in Saccharomyces cerevisiae. Appl Environ Microbiol 2005; 71(11): 6845-55. PMID: 16269718
    • (2005) Appl Environ Microbiol , vol.71 , Issue.11 , pp. 6845-6855
    • Wu, H.1    Ito, K.2    Shimoi, H.3
  • 55
    • 0035663444 scopus 로고    scopus 로고
    • Isolation of high-malate-producing saké yeasts from low-maltose-assimilating mutants
    • PMID: 16233123
    • Asano T, Kurose N, Tarumi S. Isolation of high-malate-producing saké yeasts from low-maltose-assimilating mutants. J Biosci Bioeng 2001; 92(5): 429-433. PMID: 16233123
    • (2001) J Biosci Bioeng , vol.92 , Issue.5 , pp. 429-433
    • Asano, T.1    Kurose, N.2    Tarumi, S.3
  • 57
    • 0030798166 scopus 로고    scopus 로고
    • Constitutive mutations of the Saccharomyces cerevisiae mal-activator genes MAL23, MAL43, MAL63, and MAL64
    • PMID: 9258674
    • Gibson A, Wojciechowicz L, Danzi S, Zhang B, Kim J, Hu Z, et al. Constitutive mutations of the Saccharomyces cerevisiae mal-activator genes MAL23, MAL43, MAL63, and MAL64. Genetics 1997; 146(4): 1287-98. PMID: 9258674
    • (1997) Genetics , vol.146 , Issue.4 , pp. 1287-1298
    • Gibson, A.1    Wojciechowicz, L.2    Danzi, S.3    Zhang, B.4    Kim, J.5    Hu, Z.6
  • 58
    • 0022766123 scopus 로고
    • Identification of a second transacting gene controlling maltose fermentation in Saccharomyces carlsbergensis
    • PMID: 3537726
    • Dubin R, Perkins E, Needleman R, Michels C. Identification of a second transacting gene controlling maltose fermentation in Saccharomyces carlsbergensis. Mol Cell Biol 1986; 6(8): 2757-65. PMID: 3537726
    • (1986) Mol Cell Biol , vol.6 , Issue.8 , pp. 2757-2765
    • Dubin, R.1    Perkins, E.2    Needleman, R.3    Michels, C.4
  • 59
    • 85069329468 scopus 로고    scopus 로고
    • Recurrent rearrangement during adaptive evolution in an interspecific yeast hybrid suggests a model for rapid introgression
    • PMID: 18769710
    • Dunn B, Paulish T, Stanbery A, Piotrowski J, Koniges G, Kroll E, et al. Recurrent rearrangement during adaptive evolution in an interspecific yeast hybrid suggests a model for rapid introgression. 2013;PLoS Genet 4: e1000183. doi: 10.1371/journal.pgen.1000183 PMID: 18769710
    • (2013) PLoS Genet , vol.4 , pp. e1000183
    • Dunn, B.1    Paulish, T.2    Stanbery, A.3    Piotrowski, J.4    Koniges, G.5    Kroll, E.6
  • 60
    • 84924982679 scopus 로고    scopus 로고
    • Genomic evolution of Saccharomyces cerevisiae under Chinese rice wine fermentation
    • PMID: 25212861
    • Li Y, Zhang W, Zheng D, Zhou Z, Yu W, Zhang L, et al. Genomic evolution of Saccharomyces cerevisiae under Chinese rice wine fermentation. Genome Biol Evol. 2014; 6(9): 2516-26. doi: 10.1093/gbe/evu201 PMID: 25212861
    • (2014) Genome Biol Evol , vol.6 , Issue.9 , pp. 2516-2526
    • Li, Y.1    Zhang, W.2    Zheng, D.3    Zhou, Z.4    Yu, W.5    Zhang, L.6


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