Scented rice (Oryza sativa L.) Cultivars of India: A perspective on quality and diversity

Scented Rice (Oryza Sativa L.) Cultivars of India: A Perspective on Quality and Diversity

Volumn , Issue , 2015, Pages 1-142

  Nadaf, Altafhusain ^a   Mathure, Sarika ^a   Jawali, Narendra ^b  

^a UNIVERSITY OF PUNE   (India)

^b BHABHA ATOMIC RESEARCH CENTRE   (India)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84986576740     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1007/978-81-322-2665-9     Document Type: Book

References (291)

1. Adams A, Kimpe ND (2006) Chemistry of 2-Acetyl-1-Pyrroline, 6-Acetyl-1,2,3,4-Tetrahydropyridine, 2-Acetyl-2-Thiazoline and 5-Acetyl-2,3-Dihydro-4H-thiazine: extraordinary Maillard flavor compounds. Chem Rev 106:2299-2319
2. Ahn SN, Bollisch CN, Tanksley SD (1992) RFLP tagging of a gene for aroma in rice. Theor Appl Genet 84:825-828
3. Bergman C, Delgado J, Bryant R, Grimm C, Cadwallder K, Webb BA (2000) Rapid gas chromatographic technique for quantifying 2-Acetyl-1-Pyrroline and hexanal in rice Oryza sativa L. Cereal Chem 77(4):454-458
4. Berner DK, Hoff BJ (1986) Inheritance of scent in American long grain rice. Crop Sci 26:876-878
5. Bradbury LM, Fitgerald TL, Henry RJ, Jin Q, Waters DLE (2005) The gene for fragrance in rice. Plant Biotechnol J 3:363-370
6. Brahmachary RL (1996) The expanding world of 2-acetyl-1-pyrroline. Curr Sci 71(4):257-258
7. Buttery RG, Ling LC, Juliano BO (1982) 2-acetyl-1-pyrroline: an important aroma component of cooked rice. Chem Ind 23:958
8. Buttery RG, Juliano BO, Ling LC (1983a) Identification of rice aroma compound 2-acetyl-1-pyrroline in Pandan leaves. Chem Ind 23:478
9. Buttery RG, Ling LC, Juliano BO, Turnbaugh JG (1983b) Cooked rice aroma and 2-acetyl-1-pyroline in rice. J Agric Food Chem 31:823-826
10. Buttery RG, Ling LC, Mon TR (1986) Quantitative analysis of 2-acetyl-1-pyrroline in rice. J Agric Food Chem 34:112-114
11. Buttery R, Turnbaugh J, Ling L (1988) Contributions of volatiles to rice aroma. J Agric Food Chem 36:1006-1009
12. Chen S, Yang Y, Shi W, Ji Q, He F, Zhang Z, Xu M (2008) Badh2, encoding betaine aldehyde dehydrogenase, inhibits the biosynthesis of 2-acetyl- 1-pyrroline, a major component in rice fragrance. Plant Cell 20(7):1850-1861
13. Cordeiro GM, Christopher MJ, Henry RJ, Reineke RF (2002) Identification of microsatellite markers for fragrance in rice by analysis of the rice genome sequence. Mol Breed 9:245-250
14. De Kimpe N, Keppens M (1996) Novel syntheses of the major flavour components of bread and cooked rice. J Agric Food Chem 44(6):1515-1519
15. Demyttenaere J, Abbaspour Tehrani K, De Kimpe N (2002) The chemistry of the most important flavour compounds of bread and cooked rice. ACS Symp Ser 826:158-173
16. Fitzgerald MA, Sackville Hamilton NR, Calingacion MN, Verhoeven HA, Butardo VM (2008) Is there a second fragrance gene in rice? Plant Biotechnol J 6(4):416-423
17. Garland S, Lewin L, Blakeney A, Reineke R, Henry R (2000) PCR based molecular markers for the fragrance gene in rice (Oryza sativa L.). Theor Appl Genet 101:364-371
18. Hussain AA, Maurya DM, Vaish CP (1987) Studies on quality status of indigenous upland rice (Oryza sativa). Indian J Genet 47(2):145-152
19. Jain S, Jain RK, McCouch SR (2004) Genetic analysis of Indian aromatic and quality rice (Oryza sativa L.) germplasm using panels of fluorescently-labeled microsatellite markers. Theor Appl Genet 109:965-977
20. Jena KK, Mackill DJ (2008) Molecular markers and their use in marker-assisted selection in rice. Crop Sci 48(4):1266-1276
21. Joshi RK, Behera L (2006) Identification and differentiation of indigenous non-basmati aromatic rice genotypes of India using microsatellite markers. Afr J Biotechnol 6(4):348-354
22. Juliano BO, Bautista GM, Lugay JC, Reyes AC (1964) Studies on the physicochemical properties of rice. J Agric Food Chem 12:131-138
23. Khush GS (1997) Origin, dispersal, cultivation and variation of rice. Plant Mol Biol 35(1):25-34
24. Khush GS (2000) Taxonomy and origin of rice. In: Singh RK, Singh US, Khush GS (eds) Aromatic rices. Oxford & IBH Pub. Co., New Delhi, pp 5-13
25. Khush GS, Paule CM, Delacruz NM (1979) Rice grain quality evaluation and improvement at IRRI. In: Chemical aspects of rice grain quality. IRRI, Los Baños, pp 21-31
26. Li J, Ku DF, Li LF (1996) Analysis of fragrance inheritance in scented rice variety Shenxiangjing-4. Acta Agric Shanghai 12:78-81
27. Lin H (1995) RFLP mapping of QTLs for grain shape traits in indica rice (Oryza sativa L. subsp. indica). Sci Agric Sin 28:1-7
28. Lin C, Hsih T, Hoff B (1990) Identification and quantification of the “Popcorn”-like Aroma in Louisiana Aromatic Delia Rice (Oryza sativa, L.). J Food Sci 55:1466-1467
29. Lorieux M, Petrov M, Huang N, Guiderdoni E, Ghesquiere A (1996) Aroma in rice: genetic analysis of a quantitative trait. Theor Appl Genet 93:1145-1151
30. Malik SS, Dikshit N, Dash AB, Lodh SB (1994) Studies on agromorphological and physicochemical characteristics of local scented rice varieties. Oryza 31:106-110
31. Maraval I, Mestres C, Pernin K, Ribeyre F, Boulanger R, Guichard E, Gunata Z (2008) Odor-active compounds in cooked rice cultivars from Camargue (France) analyzed by GC#O and GC#MS. J Agric Food Chem 56(13):5291-5298
32. Nagaraju J, Kathirvel M, Kumar RR, Siddiq EA, Hasnain SE (2002) Genetic analysis of traditional and evolved Basmati and non-Basmati rice varieties by using fluorescence-based ISSR-PCR and SSR markers. Proc Natl Acad Sci U S A 99(9):5836-5841
33. Niu X, Tang W, Huang W, Ren G, Wang Q, Luo D, Xiao Y, Yang S, Wang F, Lu BR, Gao F, Lu T, Liu Y (2008) RNAi-directed downregulation of Osbadh2 results in aroma (2-acetyl-1-pyrroline) production in rice (Oryza sativa L.). BMC Plant Biol 8:100
34. Paule CM, Powers JJ (1989) Sensory and chemical examination of aromatic and non aromatic rices. J Food Sci 54:343-346
35. Pinson SRM (1994) Inheritance of aroma in six rice culti-vars. Crop Sci 34:1151-1157
36. Prashanth SR, Parani M, Mohanty BP, Talame V, Tuberosa R, Parida A (2002) Genetic diversity in cultivars and landraces of Oryza sativa subsp. indica as revealed by AFLP markers. Genome 45(3):451-459
37. Raychaudhari P (1992) Agriculture in ancient India. ICAR, New Delhi, p 62
38. Ren JS, Xiao PC, Chen Y, Huang X, Wu XJ, Wang XD (2004) Study on heredity of aroma genes in several maintainer lines of aromatic rice. Seed 23:24-28
39. Sakthivel K, Sundaram RM, Shobharani N, Balachandran SM, Neeraja CN (2009) Genetic and molecular basis of fragrance in rice. Biotechnol Adv 27(4):468-473
40. Shi W, Yang Y, Chen S, Xu M (2008) Discovery of a new fragrance allele and the development of functional markers for the breeding of fragrant rice varieties. Mol Breed 22(2):185-192
41. Siddiq EA (1992) Rice in India - potential areas for research and development. Oryza 29:1-6 Siddiq EA, Sadananda AR, Zaman FU (1986) Use of primary trisomic of rice in genetic analysis. In: Genetics R (ed) Proceedings of the international rice genetics symposium. International Rice Research Institute, Manila, pp 185-197
42. Siddiq EA, Vemireddy LR, Nagaraju J (2012) Basmati rices: genetics, breeding and trade. Agric Res 1(1):25-36
43. Singh RK, Singh US (2003) A treatise on the scented rices of India. Kalyani Publishers, New Delhi
44. Singh RK, Singh US, Khush GS, Rohilla R, Singh JP, Singh G, Shekhar KS (2000) Small and medium grained scented rices of India. In: Singh RK, Singh US, Khush GS (eds) Aromatic rices. Oxford & IBH Pub. Co, New Delhi, pp 155-177
45. Srinivas P, Sulochanamma G, Raghavan B, Gurudutt K (2004) An improved process for the stabilization of 2-acetyl-1-pyrroline, the basmati rice flavourant. WIPO Patent, WO/2004/056202
46. Tanchotikul U, Hsieh TC-Y (1991) An improved method for quantification of 2-acetyl-1-pyrroline, a “popcorn”- like aroma, in aromatic rice by high-resolution gas chromatography/mass spectrometry/selected ion monitoring. J Agric Food Chem 39:944-947
47. Tsuzuki E, Shimokawa E (1990) Inheritance of aroma in rice. Euphytica 46:157-159
48. Vanavichit A (2007) Molecular diversity and evolution of aromatic rice in Thailand. In: International training workshop, the conservation and utilization of tropical/ subtropical plant genetic resources. Taiwan Agricultural Research Institute, Council of Agriculture (TARIC), Taiwan, pp 131-134
49. Vaughan DA, Morishima H, Kadowaki K (2003) Diversity in the Oryza genus. Curr Opin Plant Biol 6(2):139-146
50. Wanchana S, Kamolsukyunyong W, Ruengphayak S, Toojinda T, Tragoonrung S, Vanavichit A (2005) A rapid construction of a physical contig across a 4.5 cM region for rice grain aroma facilitates marker enrichment for positional cloning. Sci Asia 31:299-306
51. Widjaja RW, Craske JD, Wootton M (1996) Comparative studies on volatile components of non-fragrant and fragrant rices. J Sci Food Agric 70:151-161
52. Xu Y, Crouch JH (2008) Marker-assisted selection in plant breeding: from publications to practice. Crop Sci 48:391-407
53. Yang DK, Lee KS, Jeong OY, Kim KJ, Kays SJ (2008a) Characterization of volatile aroma compounds in cooked black rice. J Agric Food Chem 56(1):235-240
54. Yang DS, Robert LS, Kyu-Seong L, Stanley JK (2008b) Comparison of odor-active compounds from six distinctly different rice flavor types. J Agric Food Chem 56(8):2780-2787
55. Yano M, Shimosaka E, Sato A, Nakagahra M (1991) Linkage analysis of a gene for scent in indica rice variety, surjam-khi, using restriction fragment length polymorphism makers (in Japanese). Jap J Breed 41:338-339
56. Yoshihashi T (2002) Quantitative analysis on 2-Acetyl-1-pyrroline of an aromatic rice by stable isotope dilution method and model studies on its formation during cooking. J Food Sci 67(2):619-622
57. Bansal UK, Saini RG, Saxena S, Agarwal RC, Sharma AD (2006) Catalogue of aromatic rice (Oryza sativa L.) germplasm. Punjab Agricultural University, Ludhiana and National Bureau of Plant Genetic Resources, New Delhi
58. Bhatti MS (1998) Crop gene pools in the mountain areas of Pakistan and threats. In: Pratap T, Sthapit B (eds) Managing Agro biodiversity. ICIMOD, Kathmandu, pp 323-333
59. Chaudhary P, Gauchan D, Rana RB, Sthapit BR, Jarvis DI (2006) Potential loss of rice landraces from a Terai community in Nepal: a case study from Kachorwa, Bara. PGR Newsl 137:14-21
60. Court MN, Stephen RC, Waid JS (1964) Toxicity as a cause of the inefficiency of urea as a fertilizer. Eur J Soil Sci 15(1):42-48
61. Das SR, Roy JK, Kar M, Das S (2003) Aromatic rices of Orissa. In: Singh RK, Singh US (eds) A treatise on the scented rices of India. Kalyani Publishers, New Delhi, pp 355-375
62. Dikshit KR (1986) Maharashtra in maps. Maharashtra state board for literature and culture, Bombay, pp 31-42
63. Glaszmann JC (1987) Isozymes and classification of Asian rice varieties. Theor Appl Sci 74:21-30
64. Hanamaratti NG, Prashanthi SK, Salimath PM, Hanchinal RR, Mohankumar HD, Parameshwarappa KG, Raikar SD (2008) Traditional land races of rice in Karnataka reservoirs of valuable traits. Curr Sci 94(2):242-247
65. Hien NL, Sarhadi WA, Oikawa Y, Hirata Y (2007) Genetic diversity of morphological responses and the relationships among Asia aromatic rice (Oryza sativa L.) cul-tivars. Tropics 16(4):343-355
66. Hore DK (2005) Rice diversity collection, conservation and management in northeastern India. Genet Resour Crop Evol 52(8):1129-1140
67. IBPGR-IRRI Rice Advisory committee (1980) Descriptors for rice Oryza sativa L. International Rice Research Institute, Manila
68. Itani T (1993) History, cultivation and breeding of aromatic rice varieties. Bull Hiroshima Prefect Univ 5(1/2):267-281
69. Juma C (1989) The Gene Hunter Biotechnology and the scramble for seeds. Princeton University Press, Princeton, p 14
70. Khush GS (2000) Taxonomy and origin of rice. In: Singh RK, Singh US, Khush GS (eds) Aromatic rices. Oxford & IBH Pub. Co., New Delhi, pp 5-13
71. Mathure S, Shaikh A, Renuka N, Wakte K, Jawali N, Thengane R, Nadaf A (2011) Characterisation of aromatic rice (Oryza sativa L.) germplasm and correlation between their agronomic and quality traits. Euphytica 179(2):237-246
72. Nerkar YS, Patil VD, Misal MB, Katare NB (2003) Aromatic rices of Maharashtra. In: Singh RK, Singh US, Khush GS (eds) Aromatic rices. Oxford & IBH Pub. Co., New Delhi, pp 339-346
73. Nugsuk A, Winichphol N, Rugsardthong V (2003) Identification of 2-Acetyl-1-pyrroline, the principle aromatic rice flavour compound, in fungus cultures. In: The 2nd international conference on biodiversity and bioactive compound, 17-19 July 2003. Pattaya exhibition Center, Cholburi, Thailand
74. Patil HN, Patil VH (1994) An assessment of status of rice varieties in north konkan regions of Maharashtra. J Maharashtra Agric Univ 19(1):69-72
75. Patra BC, Dhua SR (2003) Agro-morphological diversity scenario in upland rice germplasm of Jeypore tract. Genet Resour Crop Evol 50(8):825-828
76. Rana JC, Negi KS, Wani SA, Saxena S, Pradheep K, Kak A, Pareek SK, Sofi PA (2009) Genetic resources of rice in the Western Himalayan region of India: current status. Genet Resour Crop Evol 56(7):963-973
77. Rohilla R, Singh VP, Singh US, Singh RK, Khush GS (2000) Crop husbandry and environmental factors affecting aroma and other quality traits. In: Singh RK, Singh US, Khush GS (eds) Aromatic rices. Oxford & IBH Pub. Co, New Delhi, pp 155-177
78. Romanczyk JLJ, McClelland CA, Post LS, Aitken WM (1995) Formation of 2-Acetyl-1-pyrroline by several Bacillus cereous strains isolated from cocoa fermentation boxes. J Agric Food Chem 43:469-475
79. Rungsardthong V, Noomhorm A (1995). Microbial Production of aromatic rice flavours, 2-Acetyl-1-pyrroline compounds. Thai Patent 13175
80. Shobharani N, Singh RK (2003) Efforts on aromatic rice improvement in India. In: Singh RK, Singh US (eds) A treatise on the scented rices of India. Kalyani Publishers, New Delhi, pp 23-72
81. Siddiq EA (1992) Rice in India - potential areas for research and development. Oryza 29:1-6
82. Singh RK, Singh US (2003) A treatise on the scented rices of India. Kalyani Publishers, New Delhi
83. Singh RK, Singh US, Khush GS, Rohilla R, Singh JP, Singh G, Shekhar KS (2000a) Small and medium grained scented rices of India. In: Singh RK, Singh US, Khush GS (eds) Aromatic rices. Oxford & IBH Pub. Co, New Delhi, pp 155-177
84. Singh RK, Gautam PL, Saxena S, Singh S (2000b) Scented rice germplasm: conservation, evaluation and utilization. In: Singh RK, Singh US, Khush GS (eds) Aromatic rices. Oxford & IBH Pub. Co, New Delhi, pp 107-133
85. Suwanarit A, Kreetapirom S, Buranakarn S, Varanyanond W, Tungtrakul P, Somboonpong S, Rattapat S, Ratanasupa S, Romyen P, Wattanapryapkul S, Naklang K, Rotjanakusal S, Pornurisnit P (1996) Effect of nitrogen fertilizer on grain qualities of Khao Dawk Mali-105. Kasetsart J (Nat Sci) 30:458-474
86. Adair CR, Brachell HM, Jodon NE, Johnston TH, Thysell JR, Green VE, Webb BD, Atkins JG (1966) Rice breeding and testing methods in the U.S. USDA Agricultural Research Service Handbook, 289, Washington, D.C. (USA) pp 19-64
87. Bhatupadya VG, Bhat RS, Shenoy VV, Salimath PM (2008) Physico-chemical characterization of popping-special rice accessions. Karnataka J Agric Sci 21(2):84-186
88. Bisne R, Sarawgi AK (2008) Agro-morphological and quality characterization of Badshahbhog group from aromatic rice germplasm of Chhattisgarh. Bangladesh J Agric Res 33(3):479-492
89. Cagampang GB, Parez CM, Juliano BO (1973) A gel consistency test for eating quality of rice. J Sci Food Agric 24:1589-1594
90. Cruz DN, Khush GS (2004) Rice grain quality evaluation procedures. In: Singh RK, Singh US, Khush GS (eds) Aromatic rices. Kalyani, New Delhi, pp 15-28
91. Dela Cruz N, Kumar I, Kaushik RP, Khush GS (1989) Effect of temperature during grain development on the performance and stability of cooking quality components of rice. Jpn J Breed 39:299-306
92. Dipti SS, Hossain ST, Bari MN, Kabir KA (2002) Physicochemical and cooking properties of some fine rice varieties. Pak J Nutr 1(4):188-190
93. Dipti SS, Bari MN, Kabir KA (2003) Grain quality characteristics of some Beruin Rice varieties of Bangladesh. Pak J Nutr 2(4):242-245
94. Dutta RK, Lahiri BP, Baset MA (1998) Characterization of some aromatic and fine rice cultivars in relation to their physicochemical quality of grains. Ind J Plant Phys 3(1):61-64
95. George SP, Bastin D, Radhakrishnan NV, Aipe KC (2005) Evaluation of aromatic rice varieties in Wayanad, Kerala. J Trop Agric 43(1-2):67-69
96. Hussain AA, Maurya DM, Vaish CP (1987) Studies on quality status of indigenous upland rice (Oryza sativa). Ind J Genet 47(2):145-152
97. Juliano BO (1971) A simplified assay for milled rice amylose. Cereal Sci Today 16:334-338
98. Juliano BO (1979) The chemical basis of rice grain quality. In: Proceedings of the workshop on chemical aspects of rice grain quality. IRRI, Los Banos, Philippines
99. Juliano BO, Villareal CP (1993) Grain quality evaluation of world rices. IRRI, Manila, Philippines, p 205
100. Juliano BO, Bautista GM, Lugay JC, Reyes AC (1964) Studies on the physicochemical properties of rice. J Agric Food Chem 12:131-138
101. Khatun MM, Ali MH, Delacruz QD (2003) Correlation studies on grain Physicochemical Characteristics of Aromatic Rice. Pak J Biol Sci 6(5):511-513
102. Khush GS, Juliano BO (1985) Rice grain quality and marketing. In: Breeding for high-yielding rices of exceil-ent cooking and eating quality. IRRI, Manila, pp 61-69
103. Khush GS, Paule CM, Delacruz NM (1979) Rice grain quality evaluation and improvement at IRRI. In: Chemical aspects of rice grain quality. IRRI, Los Baños, pp 21-31
104. Krishna Veni B, Shobha Rani N (2006) Association of grain yield with quality characteristics and other yield components in rice. Oryza 43(4):320-322
105. Kumar I, Khush GS (1986) Gene dosage effect of amylose content in rice endosperm. Jpn J Genet 61:559-568
106. Kumar D, Singh G, Singh US (2003) Evaluation of physical characteristics of aromatic rice grown at different locations. J Food Sci Technol 40(6):660-662
107. Little RR, Hilder GB, Dawson EH (1958) Differential effect of dilute alkali on 25 varieties of milled white rice. Cereal Chem 35:111-126
108. Mahadevappa M, Mohankumar HD (2003) The aromatic rices of Karnataka. In: Singh RK, Singh US (eds) A treatise on the scented rices of India. Kalyani publishers, New Delhi, pp 355-375
109. Mahindru SK (1995) Manual of basmati rice. Metropolitan Book, New Delhi, pp 16-21
110. Malik SS, Dikshit N, Dash AB, Lodh SB (1994) Studies on agromorphological and physicochemical characteris-tica of local scented rice varieties. Oryza 31:106-110
111. Marothia DM (2003) Domestic trade in aromatic rice: lessons from an exploratory study of Chhattisgarh. In: Singh RK, Singh US (eds) A treatise on the scented rices of India. Kalyani Publishers, New Delhi, pp 143-164
112. Mutters RG, Thompsons JF (2009). Rice quality in global market. In: Rice quality handbook, University of California, Agriculture and Natural Resources, Canada, p 13
113. Ramarathanam N, Kulkarni PR (1988) Chemical composition and cooking quality of rice varieties grown in Maharashtra. J Maharashtra Agric Univ 13(2):203-205
114. Richharia RH, Govindswami S (1966) Rices in India. Scientific Book Co., Patna, p 346
115. Sarawgi AK, Bisne R (2007) Studies on genetic divergence of aromatic rice germplasm for agro-morphological and quality characters. Oryza 44(1):74-76
116. Sarma KK, Ahmed T, Baruah DK (1990) Grain characteristics of some aromatic rice varieties of Assam. Intl Rice Res Newsl 15(1):13
117. Sharma N (2002) Quality characteristics of non-aromatic and aromatic (Oryza sativa) varieties of Punjab. Ind J Agric Sci 72(7):408-410
118. Shobharani N, Singh RK (2003) Efforts on aromatic rice improvement in India. In: Singh RK, Singh US (eds) A treatise on the scented rices of India. Kalyani Publishers, New Delhi, pp 23-72
119. Shobharani N, Subbarao LV, Viraktamath BC, Mishra B (2004) National guidelines for the conduct of tests for distinctness, uniformity and stability - Rice (Oryza sativa L.), DRR technical bulletin no 8. Directorate of Rice Research, Hydrabad
120. Shobharani N, Pandey MK, Prasad GSV, Sudharshan I (2006) Historical significance, grain quality features and precision breeding for improvement of export quality basmati varieties in India. Ind J Crop Sci 1(1-2):29-41
121. Siddiq EA, Vemireddy LR, Nagaraju J (2012) Basmati rices: genetics, breeding and trade. Agric Res 1(1):25-36
122. Singh VP (2000) The Basmati rice of India. In: Singh RK, Singh US, Khush GS (eds) Aromatic rices. Oxford and IBH Publishing, New Delhi, pp 135-154
123. Singh RK, Singh US, Khush GS, Rohilla R, Singh JP, Singh G, Shekhar KS (2000a) Small and medium grained scented rices of India. In: Singh RK, Singh US, Khush GS (eds) Aromatic rices. Oxford & IBH Pub. Co., New Delhi, pp 155-177
124. Singh RK, Gautam PL, Saxena S, Singh S (2000b) Scented rice germplasm: conservation, evaluation and utilization. In: Singh RK, Singh US, Khush GS (eds) Aromatic rices. Oxford & IBH Pub. Co., New Delhi, pp 107-133
125. Singh US, Rohilla R, Srivastava PC, Singh N, Singh RK (2003) Aromatic rices of Orissa. In: Singh RK, Singh US (eds) A treatise on the scented rices of India. Kalyani Publishers, New Delhi, pp 307-315
126. Singh N, Kaur L, Sodhi NS, Sekhon KS (2005) Physicochemical, cooking and textural properties of milled rice from different Indian rice cultivars. Food Chem 89:253-259
127. Ajarayasiri J, Chaiseri S (2008) Comparative study on aroma-active compounds in Thai, black and white glutinous rice varieties. Kasetsart J (Nat Sci) 42:715-722
128. Arthur CL, Pawliszyn J (1990) Solid-phase microextraction with thermal desorption using fused Silica optical fibers. Anal Chem 62:2145-2148
129. Bergman C, Delgado J, Bryant R, Grimm C, Cadwallder K, Webb BA (2000) Rapid gas chromatographic technique for quantifying 2-Acetyl-1-Pyrroline and hexanal in rice Oryza sativa L. Cereal Chem 77(4):454-458
130. Bounphanousay C, Jaisil P, Fitzgerald M, Hamilton NRS, Sanitchon J (2008) Chemical and molecular characterization of fragrance in black glutinous rice from Lao PDR. Asian J Plant Sci 7:1-7
131. Bradbury LMT, Henry RJ, Jin QS, Reinke RF, Waters DLE (2005) A perfect marker for fragrance genotyp-ing in rice. Mol Breed 16:279-283
132. Buttery RG, Ling LC, Juliano BO (1982) 2-acetyl-1-pyrroline: an important aroma component of cooked rice. Chem Ind 23:958
133. Buttery RG, Ling LC, Juliano BO, Turnbaugh JG (1983) Cooked rice aroma and 2-acetyl-1-pyroline in rice. J Agric Food Chem 31:823-826
134. Buttery R, Turnbaugh J, Ling L (1988) Contributions of volatiles to rice aroma. J Agric Food Chem 36:1006-1009
135. Buttery RG, Orts WJ, Takaoka GR, Nam Y (1999) Volatile flavor components of rice cakes. J Agric Food Chem 47(10):4353-4356
136. Champagne ET (2008) Rice aroma and flavor: A literature review. Cereal Chem 85(4):445-454
137. Frankel EN (2005) Lipid oxidation. Oily Press, Bridgewater
138. Grimm CC, Bergman C, Delgado JT, Bryant R (2001) Screening for 2-acetyl-1-pyrroline in the headspace of rice using SPME/GC-MS. J Agric Food Chem 49:245-249
139. Hamm S, Bleton J, Connan J, Tchapla A (2005) A chemical investigation by headspace SPME and GC-MS of volatile and semi-volatile terpenes in various olibanum samples. Phytochemistry 66(12):1499-1514
140. Jezussek M, Juliano B, Schieberle P (2002) Comparison of key aroma compounds in cooked brown rice varieties based on aroma extract dilution analysis. J Agric Food Chem 50:1101-1105
141. Kataoka H (2002) Automated sample preparation using in-tube solid-phase micro- extraction and its application - a review”. Anal Bioanal Chem 373:31-45
142. Laguerre M, Mestres C, Davrieux F, Ringuet J, Boulanger R (2007) Rapid discrimination of scented rice by solid phase microextraction, mass spectrometry and multivariate analysis used as a mass sensor. J Agric Food Chem 55:1077-1083
143. Lam HS, Proctor A (2003) Milled rice oxidation volatiles and odor development. J Food Sci 68:2676-2681
144. Mahatheeranont S, Keawsa-ard S, Dumri K (2001) Quantification of the rice aroma compound, 2-acetyl-1-pyrroline, in uncooked Khao Dawk Mali 105 brown rice. J Agric Food Chem 49:773-779
145. Mansoor MA, Proctor A (2004) Volatile components analysis of commercially milled head and brown rice. J Food Sci 69(8):632-636
146. Maraval I, Mestres C, Pernin K, Ribeyre F, Boulanger R, Guichard E, Gunata Z (2008) Odor-active compounds in cooked rice cultivars from Camargue (France) analyzed by GC#O and GC#MS. J Agric Food Chem 56(13):5291-5298
147. Maraval I, Sen K, Agrebi A, Menut C, Morere A, Boulanger R, Gay F, Mestres C, Gunata Z (2010) Quantification of 2-acetyl-1-pyrroline in rice by stable isotope dilution assay through headspace solid-phase microextraction coupled to gas chromatography-tandem mass spectrometry. Anal Chim Acta 675(2):148-155
148. Mathure S, Wakte KV, Nadaf A, Jawali N (2011) Quantification of 2-acetyl-1-pyrroline and other rice aroma volatiles among Indian scented rice cultivars by HS-SPME/GC-FID. Food Anal Methods 4:326-333. doi:10.1007/s12161-010-9171-3
149. Mathure S, Jawali N, Thengane RJ, Nadaf AB (2014) Comparative quantitative analysis of headspace volatiles and their association with BADH2 marker in non-basmati scented, basmati and non-scented rice (Oryza sativa L.) cultivars of India. Food Chem 142:383-391
150. Mildner-Szkudlarz S, Jelen HH, Zawirska-Wojtasiak R, Wasowicz E (2003) Application of headspace - solid phase microextraction and multivariate analysis for plant oils differentiation. Food Chem 83:515-522
151. Nadaf AB, Krishnan S, Wakte KV (2006) Histochemical and biochemical analysis of major aroma compound (2-acetyl-1-pyrroline) in Basmati and other scented rice (Oryza sativa L). Curr Sci 91(11):1533-1536
152. Nagaraju J, Kathirvel M, Kumar RR, Siddiq EA, Hasnain SE (2002) Genetic analysis of traditional and evolved Basmati and non-Basmati rice varieties by using fluorescence-based ISSR-PCR and SSR markers. Proc Natl Acad Sci U S A 99(9):5836-5841
153. Petrov M, Danzart M, Giampaoli P, Faure J, Richard H (1996) Rice aroma analysis - discrimination between a scented and a non-scented rice. Sci Aliment 16:347-360
154. Pico Y, Fernandez M, Ruiz MJ, Font G (2007) Current trends in solid-phase-based extraction techniques for the determination of pesticides in food and environment. J Biochem Biophys Methods 70:117-131
155. Sood BC, Siddiq EA (1978) A rapid technique for scent determination in rice. Indian J Gen Plant Breed 38(2):268-271
156. Sriseadka T, Wongpornchai S, Kitsawatpaiboon P (2006) Rapid method for quantitative analysis of the aroma impact compound, 2-acetyl-1-pyrroline, in fragrant rice using automated headspace gas chromatography. J Agric Food Chem 54:8183-8189
157. Stashenko EE, Martinez JR (2007) Sampling volatile compounds from natural products with headspace/ solid-phase micro-extraction. J Biochem Biophys Methods 70:235-242
158. Steffen A, Pawliszyn J (1996) The analysis of flavor volatiles using headspace solid-phase microextraction. J Agric Food Chem 44:2187-2193
159. Tananuwong K, Lertsiri S (2010) Changes in volatile aroma compounds of organic fragrant rice during storage under different conditions. J Sci Food Agric 90(10):1590-1596
160. Tava A, Bocchi S (1999) Aroma of cooked rice (Oryza sativa): comparison between commercial Basmati and Italian line B5-3. Cereal Chem 76:526-529
161. Wakte KV, Nadaf AB, Thengane RJ, Jawali N (2010) Optimization of HS-SPME conditions for quantification of 2 acetyl-1-pyrroline in Pandanus amaryllifo-lius Roxb. Food Chem 121(2):595-600
162. Wercinski S (1999) Solid phase microextraction: a practical guide. CRC, Boca Raton
163. Widjaja RW, Craske JD, Wootton M (1996) Comparative studies on volatile components of non-fragrant and fragrant rices. J Sci Food Agric 70:151-161
164. Wongpornchai S, Sriseadka T, Choonvisase S (2003) Identification and quantitation of the rice aroma compound, 2-acetyl-1-pyrroline, in bread flowers (Vallaris glabra Ktze). J Agric Food Chem 51:457-462
165. Yang DK, Lee KS, Jeong OY, Kim KJ, Kays SJ (2008a) Characterization of volatile aroma compounds in cooked black rice. J Agric Food Chem 56(1):235-240
166. Yang DS, Robert LS, Kyu-Seong L, Stanley JK (2008b) Comparison of odor-active compounds from six distinctly different rice flavor types. J Agric Food Chem 56(8):2780-2787
167. Yoshihashi T (2002) Quantitative analysis on 2-Acetyl-1-pyrroline of an aromatic rice by stable isotope dilution method and model studies on its formation during cooking. J Food Sci 67(2):619-622
168. Zeng Z, Zhang H, Zhang T, Tamogami S, Chen JY (2009) Analysis of flavor volatiles of glutinous rice during cooking by combined gas chromatography-mass spectrometry with modified headspace solid phase microextraction method. J Food Compos Anal 22(4):347-353
169. Zhou Z, Robards K, Helliwell S, Blanchard C (2002) Composition and functional properties of rice. Int J Food Sci Technol 37:849-868
170. Adair CR, Brachell HM, Jodon NE, Johnston TH, Thysell JR, Green VE, Webb BD, Atkins JG (1966) Rice breeding and testing methods in the U.S. USDA agricultural research service handbook, 289, pp 19-64
171. Aggarwal R, Shenoy V, Ramadevi J, Rajkumar R, Singh L (2002) Molecular characterization of some Indian Basmati and other elite rice genotypes using fluorescent-AFLP. Theor Appl Genet 105(5):680-690
172. Ahn SN, Bollisch CN, Tanksley SD (1992) RFLP tagging of a gene for aroma in rice. Theor Appl Genet 84:825-828
173. Aluko G, Martinez C, Tohme J, Castano C, Bergman C, Oard JH (2004) QTL mapping of grain quality traits from the interspecific cross Oryza sativa x O. glaber-rima. Theor Appl Genet 109(3):630-639
174. Amarawathi Y, Singh R, Singh AK, Singh VP, Mohapatra T, Sharma TR, Singh NK (2008) Mapping of quantitative trait loci for basmati quality traits in rice Oryza sativa L. Mol Breed 21(1):49-65
175. Ayres NM, McClung AM, Larkin PD, Bligh HFJ, Jones CA, Park WD (1997) Microsatellites and a single nucleotide polymorphism differentiate apparent amylose classes in an extended pedigree of US rice germ-plasm. Theor Appl Genet 94:773-781
176. Bao JS, Corke H, Sun M (2002) Microsatellites in starch-synthesizing genes in relation to starch physicochemical properties in waxy rice Oryza sativa L. Theor Appl Genet 105:898-905
177. Bao JS, Corke H, Sun M (2006) Microsatellites single nucleotide polymorphisms and a sequence tagged site in starch-synthesizing genes in relation to starch physicochemical properties in nonwaxy rice Oryza sativa L. Theor Appl Genet 113(7):1185-1196
178. Bergman CJ, Delgado JT, McClung AM, Fjellstrom RG (2001) An improved method for using a microsatellite in the rice waxy gene to determine amylose class. Cereal Chem 78:257-260
179. Bhuyan N, Borah BK, Sarma RN (2007) Genetic diversity analysis in traditional lowland rice Oryza sativa L. of Assam using RAPD and ISSR markers. Curr Sci 93(7):967-972
180. Bligh HFJ, Till RI, Jones CA (1995) A microsatellite sequence closely linked to the wx gene of Oryza sativa. Euphytica 86:83-85
181. Bligh HFJ, Blackhall NW, Edwards KJ, McClung AM (1999) USING amplified fragment length polymorphisms and simple sequence length polymorphisms to identify cultivars of brown and white milled rice. Crop Sci 39:1715-1721
182. Bourgis F, Guyot R, Gherbi H, Tailliez E, Amabile I, Salse J, Ghesquiere A (2008) Characterization of the major fragrance gene from an aromatic japonica rice and analysis of its diversity in Asian cultivated rice. Theor Appl Genet 117(3):353-368
183. Bradbury LM, Fitgerald TL, Henry RJ, Jin Q, Waters DLE (2005a) The gene for fragrance in rice. Plant Biotech J 3:363-370
184. Bradbury LMT, Henry RJ, Jin Q, Reinke RF, Waters DLE (2005b) A perfect marker for fragrance genotyping in rice. Mol Breed 16:279-283
185. Chen S, Wu J, Yang Y, Shi W, Xu M (2006) The fgr gene responsible for rice fragrance was restricted within 69 kb. Plant Sci 171(4):505-514
186. Collard BC, Jahufer MZ, Brouwer JB, Pang EC (2005) An introduction to markers, quantitative trait loci (QTL) mapping and marker-assisted selection for crop improvement: The basic concepts. Euphytica 142(1):169-196
187. Cordeiro GM, Christopher MJ, Henry RJ, Reineke RF (2002) Identification of microsatellite markers for fragrance in rice by analysis of the rice genome sequence. Mol Breed 9:245-250
188. Das SR, Roy JK, Kar M, Das S (2003) Aromatic rices of Orissa. In: Singh RK, Singh US (eds) A treatise on the scented rices of India. Kalyani Publishers, New Delhi, pp 355-375
189. Davierwala AP, Chawdari KV, Kumar S, Reddy APK, Ranjekar PK, Gupta VS (2000) Use of three different marker systems to estimate genetic diversity of Indian elite rice varieties. Genetica 108:269-284
190. Deepa VL, Bhagyalakshmi N, Shashidhar HE, Singh V, Naidu AK (2009) Physicochemical and genetic analysis of an endemic rice variety, Njavara (Oryza sativa L.), in comparison to two popular South Indian culti-vars, Jyothi (PTB 39) and IR 64G. J Agric Food Chem 57(24):11476-11483
191. Dobo M, Ayres N, Walker G, Park WD (2010) Polymorphism in the GBSS gene affects amylose content in US and European rice germplasm. J Cereal Sci 52(3):450-456
192. Fan CC, Yu XQ, Xing YZ, Xu CG, Luo LJ, Zhang QF (2005) The main effects, epistatic effects and environmental interactions of QTLs on the cooking and eating quality of rice in a doubled haploid line population. Theor Appl Genet 110:1445-1452
193. Fan C, Xing Y, Mao H, Lu T, Han B, Xu C, Li X, Zhang Q (2006) GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein. Theor Appl Genet 112(6):1164-1171
194. Fan CC, Yu SB, Wang CR, Xing YZ (2009) A causal C-A mutation in the second exon of GS3 highly associated with rice grain length and validated as a functional marker. Theor Appl Genet 118:465-472
195. Fitzgerald MA, Sackville Hamilton NR, Calingacion MN, Verhoeven HA, Butardo VM (2008) Is there a second fragrance gene in rice? Plant Biotechnol J 6(4):416-423
196. Fuentes JL, Escobar F, Alvarez A, Gallego G, Duque MC, Ferrer M, Deus JE, Tohme JM (1999) Analyses of genetic diversity in Cuban rice varieties using isozyme, RAPD and AFLP markers. Euphytica 109(2):107-115
197. Garland S, Lewin L, Blakeney A, Reineke R, Henry R (2000) PCR based molecular markers for the fragrance gene in rice (Oryza sativa L.). Theor Appl Genet 101:364-371
198. Ge XJ, Xing YZ, Xu CG, He YQ (2005) QTL analysis of cooked rice grain elongation, volume expansion, and water absorption using a recombinant inbred population. Plant Breed 124:121-126
199. He P, Li SG, Qian Q, Ma YQ, Li JZ, Wang WM, Chen Y, Zhu LH (1999) Genetic analysis of rice grain quality. Theor Appl Genet 98:502-508
200. He Y, Han Y, Jiang L, Xu C, Lu J, Xu M (2006) Functional analysis of starch-synthesis genes in determining rice eating and cooking qualities. Mol Breed 18:277-290
201. Huang N, Parco A, Mew T, Magpantay G, McCouch S, Guiderdoni E, Khush GS (1997) RFLP mapping of isozymes, RAPD and QTLs for grain shape, brown planthopper resistance in a doubled haploid rice population. Mol Breed 3(2):105-113
202. International Rice Genome Sequencing Project (IRGSP) (2005) The map-based of the rice genome. Nature 436:793-800
203. Jain S, Jain RK, McCouch SR (2004) Genetic analysis of Indian aromatic and quality rice (Oryza sativa L.) germplasm using panels of fluorescently-labeled microsatellite markers. Theor Appl Genet 109:965-977
204. Jena KK, Mackill DJ (2008) Molecular markers and their use in marker-assisted selection in rice. Crop Sci 48(4):1266-1276
205. Jin Q, Waters D, Cordeiro GM, Henry RJ, Reineke RF (2003) A single nucleotide polymorphism (SNP) marker linked to the fragrance gene in rice (Oryza sativa L.). Plant Sci 165:359-364
206. Jin L, Lu Y, Shao Y, Zhang G, Xiao P, Shen S, Bao J (2010) Molecular marker assisted selection for improvement of the eating, cooking and sensory quality of rice (Oryza sativa L). J Cereal Sci 51(1):159-164
207. Joshi RK, Behera L (2006) Identification and differentiation of indigenous non-basmati aromatic rice genotypes of India using microsatellite markers. Afr J Biotechnol 6(4):348-354
208. Joshi SP, Gupta VS, Aggarwal RK, Ranjekar PK, Brar DS (2000) Genetic diversity and phylogenetic relationship as revealed by inter simple sequence repeat (ISSR) polymorphism in the genus Oryza. Theor Appl Genet 100(8):1311-1320
209. Juliano BO (1985). Criteria and test for rice grain quality. In: Juliano BO (ed) Rice chemistry and technology. American Association of Cereal Chemists, Inc. St. Paul, Minnesota, USA, pp 443-513
210. Juliano BO, Duff B (1991) Rice grain marketing and quality issues. In: Rice grain quality as an emerging priority in national breeding programs. International Rice Research Institute, Los Banos, pp 55-64
211. Kovach MJ, Calingacion MN, Fitzgerald MA, McCouch SR (2009) The origin and evolution of fragrance in rice (Oryza sativa L.). Proc Natl Acad Sci U S A 106:14444-14449
212. Kubo T, Takano-kai N, Yoshimura A (2001) RFLP mapping of genes for long kernel and awn on chromosome 3 in rice. Rice Genet Newsl 18:26-28
213. Kumar LS (1999) DNA markers in plant improvement: an overview. Biotechnol Adv 17(2-3):143-182
214. Lanceras JC, Hun ZL, Naivikul Q, Vanavichit A, Ruanjaichon V, Tragoonrung S (2000) Mapping of genes for cooking and eating qualities in Thai Jasmine rice (KDML105). DNA Res 7:93-101
215. Langridge P, Lagudah E, Holton T, Appels R, Sharp P, Chalmers K (2001) Trends in genetic and genome analyses in wheat: a review. Aust J Agric Res 52:1043-1077
216. Larkin PD, Park WD (2003) Association of waxy gene single nucleotide polymorphisms with starch characteristics in rice (Oryza sativa L.). Mol Breed 12:335-339
217. Li J, Thomson M, McCouch SR (2004) Fine mapping of a grain-weight quantitative trait locus in the pericentro-meric region of rice chromosome 3. Genetics 168(4):2187-2195
218. Li X, Yan W, Agrama H, Jia L, Jackson A, Moldenhauer K, Yeater K, McClung A, Wu D (2012) Unraveling the complex trait of harvest index with association mapping in rice (Oryza sativa L.). PLoS One 7(1):e29350
219. Lin H (1995) RFLP mapping of QTLs for grain shape traits in indica rice (Oryza sativa L. subsp. indica). Sci Agric Sin 28:1-7
220. Liu X, Gu M, Han Y, Ji Q, Lu J, Gu S, Zhang R, Li X, Chen J, Korban SS, Xu M (2004) Developing gene-tagged molecular markers for functional analysis of starch-synthesizing genes in rice (Oryza sativa L.). Euphytica 135(3):345-353
221. Liu QQ, Li QF, Cai XL, Wang HM, Tang SZ, Yu HX, Wang ZY, Gu MH (2006) Molecular marker-assisted selection for improved cooking and eating quality of two elite parents of hybrid rice. Crop Sci 46:2354-2360
222. Lorieux M, Petrov M, Huang N, Guiderdoni E, Ghesquiere A (1996) Aroma in rice: genetic analysis of a quantitative trait. Theor Appl Genet 93:1145-1151
223. Mackill DJ, Zhang Z, Redona ED, Colowit PM (1996) Level of polymorphism and genetic mapping of AFLP markers in rice. Genome 39:969-977
224. Mathure S, Nadaf A, Jawali N (2010) Diversity analysis in selected non-basmati scented rice collection (Oryza sativa L.). Rice Sci 17(1):35-42
225. Mathure S, Shaikh A, Renuka N, Wakte K, Jawali N, Thengane R, Nadaf A (2011) Characterisation of aromatic rice (Oryza sativa L.) germplasm and correlation between their agronomic and quality traits. Euphytica 179(2):237-246
226. Mathure SV, Jawali N, Thengane RJ, Nadaf AB (2014) Comparative quantitative analysis of headspace volatiles and their association with BADH2 marker in non-basmati scented, basmati and non-scented rice (Oryza sativa L.) cultivars of India. Food Chem 142:383-391
227. McGregor C, Lambert C, Geryling M, Louw J, Warnich L (2000) A comparative assessment of DNA fingerprinting techniques (RAPD, ISSR, AFLP and SSR) in tet-raploid potato (Solanum tuberosum) germplasm. Euphytica 13:135-144
228. McKenzie KS, Rutger JN (1983) Genetic analysis of amylose content, alkali spreading score, and grain dimensions in rice. Crop Sci 23:306-313
229. Mikami I, Uwatoko N, Ikeda Y, Yamaguchi J, Hirano HY, Suzuki Y, Sano Y (2008) Allelic diversification at the wx locus in landraces of Asian rice. Theor Appl Genet 116:979-989
230. Mondini L, Arshiya N, Pagnotta MA (2009) Assessing plant genetic diversity by molecular tools. Diversity 1:19-35
231. Mueller U, Wolfenbarger L (1999) AFLP genotyping and fingerprinting. Tree 14:389-394
232. Myint KM, Arikit S, Wanchana S, Yoshihashi T, Choowongkomon K, Vanavichit A (2012). A PCR-based marker for a locus conferring the aroma in Myanmar rice (Oryza sativa L.) Theor Appl Genet 1-10
233. Nagaraju J, Kathirvel M, Kumar RR, Siddiq EA, Hasnain SE (2002) Genetic analysis of traditional and evolved Basmati and non-Basmati rice varieties by using fluorescence-based ISSR-PCR and SSR markers. Proc Natl Acad Sci U S A 99(9):5836-5841
234. Nei M, Li WH (1979) Mathematical Model for studying genetic variation in terms of Restriction endonucleases. PNAS USA 76:5269-5273
235. Ovesna J, Polakova K, Lisova L (2002) DNA analyses and their applications in plant breeding. Czech J Genet Plant Breed 38:29-40
236. Pooni HS, Kumar I, Khush GS (1993) Genetical control of amylose content in selected crosses of indica rice. Heredity 70:269-280
237. Prashanth SR, Parani M, Mohanty BP, Talame V, Tuberosa R, Parida A (2002) Genetic diversity in cultivars and landraces of Oryza sativa subsp. indica as revealed by AFLP markers. Genome 45(3):451-459
238. Prathepha P (2003) Characterization of Waxy microsatellite classes that are closely linked to the rice Waxy gene and amylose content in Thai rice germplasm. Songklanakarin J Sci Technol 25:1-8
239. Prathepha P, Baimai V (2004) Variation of Wx microsatellite allele, waxy allele distribution and differentiation of chloroplast DNA in a collection of Thai rice (Oryza sativa L.). Euphytica 140:231-237
240. Raghunathachari P, Khanna VK, Singh US, Singh NK (2000) RAPD analysis of genetic variability in Indian scented rice germplasm (Oryza sativa L.). Curr Sci 79(7):994-998
241. Rahemi MR, Kazemitabar SK, Moumeni A, Ebadi AA (2007) Evaluation of genetic diversity by using link marker for amylose content of some Iranian local rice cultivars. Asian J Plant Sci 6(5):874-877
242. Ramkumar G, Sivaranjani AK, Pandey MK, Sakthivel K, Shobha Rani N, Sudarshan I, Prasad GSV, Neeraja CN, Sundaram RM, Viraktamath BC, Madhav MX (2010) Development of a PCR-based SNP marker system for effective selection of kernel length and kernel elongation in rice. Mol Breed 26(4):735-740
243. Rana RS (1995) Conservation of plant genetic resources in India. In: Rana RS, Chandel KPS, Bhat SR, Mandal BB, Karihaloo JL, Bhat KV, Pandey R (eds) Plant germplasm conservation: biotechnological approaches. NBPGR, New Delhi
244. 60Co gamma radiations using AFLP markers. Afr J Biotechnol 8(24):6777-6783
245. Raychaudhari P, Kohli S, Srinivasan K, Mohapatra T, Sharma RP (2001) Identification and classification of aromatic rices based on DNA fingerprinting. Euphytica 118:243-251
246. Redona ED, Mackill DJ (1998) Quantitative trait locus analysis for rice panicle and grain characteristics. Theor Appl Genet 96(6):957-963
247. Rohilla R, Singh VP, Singh US, Singh RK, Khush GS (2000) Crop husbandry and environmental factors affecting aroma and other quality traits In: Singh RK, Singh US, Khush GS (eds) Aromatic rices. Oxford & IBH Pub. Co., New Delhi, pp 155-177
248. Roy S, Banerjee A, Senapati BK, Sarkar G (2012) Comparative analysis of agro-morphology, grain quality and aroma traits of traditional and Basmati-type genotypes of rice, Oryza sativa L. Plant Breed 131(4):486-492
249. Saini N, Jain N, Jain S, Jain RK (2004) Assessment of genetic diversity within and among Basmati and non-Basmati rice varieties using AFLP, ISSR and SSR markers. Euphytica 140:133-146
250. Saker MM, Youssef SS, Abdallah NA, Bashandy HS, El Sharkawy AM (2005) Genetic analysis of some Egyptian rice genotypes using RAPD, SSR and AFLP. Afr J Biotechnol 4(9):882-890
251. Sakthivel K, Sundaram RM, Shobharani N, Balachandran SM, Neeraja CN (2009) Genetic and molecular basis of fragrance in rice. Biotechnol Adv 27(4):468-473
252. Semagn K, Bjornstad A, Ndjiondjop MN (2006) An overview of molecular marker methods for plants. Afr J Biotechnol 5(25):2540-2568
253. Septiningsih EM, Trijatmiko KR, Moeljopawiro S, McCouch SR (2003) Identification of quantitative trait loci for grain quality in an advanced backcross population derived from the Oryza sativa variety IR64 and the wild relative O. rufipogon. Theor Appl Genet 107:1433-1441
254. Shao G, Tang S, Chen M, Wei X, He J, Luo J, Jiao G, Hu Y, Xie L, Hu P (2013) Haplotype variation at Badh2, the gene determining fragrance in rice. Genomics 101:157-162
255. Sharma SD, Tripathy S, Biswal J (2000) Origin of Oryza sativa and its ecotypes. Rice Breed. Genet. Edited by Oxford and IBH Pub. Co., New Delhi, pp. 350-369
256. Shi W, Yang Y, Chen S, Xu M (2008) Discovery of a new fragrance allele and the development of functional markers for the breeding of fragrant rice varieties. Mol Breed 22(2):185-192
257. Shobharani N, Singh RK (2003) Efforts on aromatic rice improvement in India. In: Singh RK, Singh US (eds) A treatise on the scented rices of India. Kalyani Publishers, New Delhi, pp 23-72
258. Shu QY, Wu DX, Xia YW, Gao MW, Ayres NM, Larkin PD, Park WD (1999) Microsatellites polymorphism on the waxy gene locus and their relationship to amylose content in indica and japonica rice, Oryza sativa L. Acta Genet Sin 26:350-358
259. Shure M, Wessler S, Fedoroff N (1983) Molecular identification and isolation of the Waxy locus in maize. Cell 35:225-233
260. Siddiq EA, Vemireddy LR, Nagaraju J (2012) Basmati rices: genetics, breeding and trade. Agric Res 1(1):25-36
261. Singh RK, Singh US (2003) A treatise on the scented rices of India. Kalyani Publishers, New Delhi
262. Singh KN, Nandi R, Shanmugasundram P, Sadasivam S, Huang N, Brar DS, Khush GS (1999) High resolution DNA fingerprinting of Indian rice (Oryza sativa L.) varieties by amplified fragment length polymorphism. Genet Resour Crop Evol 46(5):427-433
263. Singh RK, Singh US, Khush GS, Rohilla R, Singh JP, Singh G, Shekhar KS (2000) Small and medium grained scented rices of India. In: Singh RK, Singh US, Khush GS (eds) Aromatic rices. Oxford & IBH Pub. Co, New Delhi, pp 155-177
264. Singh RK, Sharma RK, Singh AK, Singh VP, Singh NK, Tiwari SP, Mohapatra T (2004) Suitability of mapped sequence tagged microsatellite site markers for establishing distinctness, uniformity and stability in aromatic rice. Euphytica 135:135-143
265. Singh D, Sirohi A, Vikas SS, Kumar V, Gaur A, Chaudhari R, Chaudhari N (2006) RAPD based identification of farmer’s collections of Kalanamak and traditional varieties of basmati rice. Ind J Crop Sci 1(1-2):102-105
266. Singh R, Singh AK, Sharma TR, Singh A, Singh NK (2012) Fine mapping of grain length QTLs on chromosomes 1 and 7 in Basmati rice (Oryza sativa L.). J Plant Biochem Biotechnol 21(2):157-166
267. Sivaranjani AKP, Pandey MK, Sudharshan I, Ramkumar G, Madhav MS, Sundaram RM, Varaprasad GS, Shobharani N (2010) Assessment of genetic diversity among Basmati and non-Basmati aromatic rices of India using SSR markers. Curr Sci 99(2):221-226
268. Smith AM, Denyer K, Martin C (1997) The synthesis of the starch granule. Annu Rev Plant Physiol Plant Mol Biol 48:67-87
269. Sood BC, Siddiq EA, Zaman FU (1983) Genetic analysis of kernel elongation in rice. Ind J Genet 43:40-43
270. Sun SX, Gao FY, Lu XJ, Wu XJ, Wang XD, Ren GJ, Luo H (2008) Genetic analysis and gene fine mapping of aroma in rice (Oryza sativa L. Cyperales, Poaceae). Genet Mol Biol 31(2):532-538
271. Tan YF, Zhang QF (2001) Correlation of simple sequence repeat (SSR) variants in the leader sequence of the wx gene with amylose content of the grain in rice. Acta Bot Sin 43:146-150
272. Tan YF, Li JX, Yu SB, Xing YZ, Xu CG, Zhang QF (1999) The three important traits for cooking and eating quality of rice grains are controlled by a single locus in an elite rice hybrid, Shanyou 63. Theor Appl Genet 99:642-648
273. Temnykh S, DeClerck G, Lukashova A, Lipovich L, Cartinhour S, McCouch S (2001) Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations, and genetic marker potential. Genome Res 11:1441-1452
274. Tian R, Jiang GH, Shen LH, Wang LQ, He YQ (2005) Mapping quantitative trait loci underlying the cooking and eating quality of rice using a DH population. Mol Breed 15:117-124
275. Tian ZX, Qian Q, Liu QQ, Yan MX, Liu XF, Yan CJ, Liu GF, Gao ZY, Tang SZ, Zeng DL, Wang YH, Yu JM, Gu MH, Li JY (2009) Allelic diversity in rice starch biosynthesis pathway leads to a diverse array of rice eating and cooking qualities. Proc Natl Acad Sci U S A 106:21760-21765
276. Vanavichit A (2007) Molecular diversity and evolution of aromatic rice in Thailand. In: International training workshop, the conservation and utilization of tropical/ subtropical plant genetic resources. Taiwan Agricultural Research Institute, Council of Agriculture (TARIC), Taiwan, pp 131-134
277. Van de Peer Y, De Wachter R (1993) TREECON: a software package for the construction and drawing of evolutionary trees. Comput Appl Biosci 9:177-182
278. Vikram P, Swamy BP, Dixit S, Ahmed H, Cruz MT, Singh A, Kumar A (2011) qDTY1.1, a major QTL for rice grain yield under reproductive-stage drought stress with a consistent effect in multiple elite genetic backgrounds. BMC Genet 12(1):89
279. Vos P, Hogers R, Bleeker M, Reijians M, Lee T, Hornes M, Frijters A, Pot J, Peleman J, Kuiper M, Zabeau M (1995) AFLP, a new technique for DNA fingerprinting. Nucl Acids Res 23:4407-4414
280. Wan XY, Wan JM, Weng JF, Jiang L, Bi JC, Wang CM, Zhai HQ (2005) Stability of QTLs for rice grain dimension and endosperm chalkiness characteristics across eight environments. Theor Appl Genet 110(7):1334-1346
281. Wan XY, Wan JM, Jiang L, Wang JK, Zhai HQ, Weng JF, Wang HL, Lei CH, Wang JL, Zhang X, Cheng ZJ, Guo XP (2006) QTL analysis for rice grain length and fine mapping of an identified QTL with stable and major effects. Theor Appl Genet 112:1258-1270
282. Wanchana S, Kamolsukyunyong W, Ruengphayak S, Toojinda T, Tragoonrung S, Vanavichit A (2005) A rapid construction of a physical contig across a 4.5 cM region for rice grain aroma facilitates marker enrichment for positional cloning. Sci Asia 31:299-306
283. Wang Z, Wu Z, Xing Y, Zheng F, Gao J, Hong M (1990) Nucleotide sequence of rice waxy gene. Nucleic Acids Res 18:5898
284. Wang ZY, Zhang FQ, Shen GZ, Gao JP, Snustad DP, Li MG, Zhang JL, Hong MM (1995) The amylase content in rice endosperm is related to the post-transcriptional regulation of the waxy gene. Plant J 7:613-622
285. Wang J, Wan X, Crossa J, Crouch J, Weng J, Zhai H, Wan J (2006) QTL mapping of grain length in rice (Oryza sativa L.) using chromosome segment substitution lines. Genet Res 88(2):93-104
286. Wang LQ, Liu WJ, Xu Y, He YQ, Luo LJ, Xing YZ, Xu CG, Zhang Q (2007) Genetic basis of 17 traits and viscosity parameters characterizing the eating and cooking quality of rice grain. Theor Appl Genet 115:463-476
287. Wang C, Chen S, Yu S (2011) Functional markers developed from multiple loci in GS3 for fine marker-assisted selection of grain length in rice. Theor Appl Genet 122(5):905-913
288. Xing YZ, Tan YF, Xu CG, Hua JP, Sun XL (2001) Mapping quantitative trait loci for grain appearance traits of rice using a recombinant inbred line population. Acta Bot Sin 43:721-726
289. Xu Y, Crouch JH (2008) Marker-assisted selection in plant breeding: from publications to practice. Crop Sci 48:391-407
290. Yi M, Nwe KT, Vanavichit A, Chai-arree W, Toojinda T (2009) Marker assisted backcross breeding to improve cooking quality traits in Myanmar rice cultivar Manawthukha. Field Crop Res 113(2):178-186
291. Zhu J, Gale MD, Quarrie S, Jackson MT, Bryan GJ (1998) AFLP markers for the study of rice biodiversity. Theor Appl Genet 96(5):602-611