Molecular characterization of some Indian Basmati and other elite rice genotypes using fluorescent-AFLP

Theoretical and Applied Genetics

Volumn 105, Issue 5, 2002, Pages 680-690

  Aggarwal, R K ^a   Shenoy, V V ^a   Ramadevi, J ^a   Rajkumar, R ^a   Singh, L ^a  

^a CENTRE FOR CELLULAR AND MOLECULAR BIOLOGY   (India)

Author keywords

Aromatic rice; Basmati; DNA polymorphism; Fluorescent AFLP; Genetic diversity; Oryza sativa

Indexed keywords

CROPS; GENES; GRAIN (AGRICULTURAL PRODUCT);

RICE GENOTYPES;

AGRICULTURE;

EMBRYOPHYTA; ORYZA SATIVA;

EID: 0036943205     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-002-0973-6     Document Type: Article

References (22)

1. Aggarwal RK, Brar DS, Nandi S, Huang N, Khush GS (1999) Phylogenetic relationships among Oryza species revealed by AFLP markers. Theor Appl Genet 98:1320-1328
2. Bligh HFJ (2000) Detection of adulteration of Basmati rice with non-premium long grain rice. Int J Food Sci Technol 35:257-265
3. Dellaporta SL, Wood J, Hick JB (1983) A plant DNA mini preparation: Version II. Plant Mol Biol Rep 1:19-21
4. Felsenstein J (1985) Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39:783-791
5. Khush GS, Juliano BO (1985) Breeding of high yielding rices for excellent cooking and eating qualities. In: IRRI (ed) Rice Grain Quality and Marketing. International Rice Research Institute, Los Banos, Philippines, pp 61-69
6. Khush GS, dela Cruz N (1998) Developing Basmati Rices with High Yield Potential. Cahiers Options Medeterraneennes 24: Rice Quality: A Pluridisciplinary Approach. CIHEAM, Paris, France (available on CD-ROM)
7. Liu F, Sun GL, Salomon B, Bothmer von R (2001) Distribution of allozymic alleles and genetic diversity in the American barley Core Collection. Theor Appl Genet 102:606-615
8. Mackill DJ, Zhang Z, Redona ED, Colowit PM (1996) Level of polymorphism and genetic mapping of AFLP markers in rice. Genome 39:969-977
9. Maheshwaran M, Subudhi PK, Nandi S, Xu JC, Parco A, Yang DC, Huang N (1997) Polymorphism, distribution and segregation of AFLP markers in a doubled haploid rice population. Theor Appl Genet 94:39-45
10. Mantel NA (1967) The detection of disease clustering and a generalized regression approach. Cancer Res 27:209-220
11. Mitchell SE, Kresovich S, Jester CA, Hernandez CJ, Szewc-McFadden AK (1997) Application of multiple PCR and fluorescence-based semi-automated allele-sizing technology for genotyping plant genetic resources. Crop Sci 37:617-624
12. Nei M, Li WH (1979) Mathematical models for studying genetic variation in terms of restriction endonucleases. Proc Natl Acad Sci USA 76:5269-5273
13. Powell W, Morgante M, Andre C, Hanafey M, Vogel J, Tingey S, Rafalaski A (1996) The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis. Mol Breed 3:225-238
14. Rohlf FJ (1992) NTSYS-PC. Numerical Taxonomy and Multivariate Analysis System, Version 1.8. Exeter Publ, New York
15. Rutger JN, Tai T, Eizenga GC, Bryant RJ (2000) Genetic Improvement of Rice for Yield, Quality Pest Resistance and Stress Tolerance. Status report of the USDA-ARS in house project no. 6225-21000-003-00D. ARS, Stuttgart, Ark.
16. Sarreal ES, Mann JA, Stroike JE, Robins AD (1997) Basmati rice lines and grains. US Patent No. 5663484. Date issued: September 2, 1997
17. Sharma A, Sharma R, Machii H (2000) Assessment of genetic diversity in a Morus germplasm collection using fluorescence-based AFLP markers. Theor Appl Genet 101:1049-1055
18. Siddiq EA, Shobha Rani N (1998) Protecting biodiversity and utilizing in rice products. In: Proc 4th IFCON. Mysore, India, pp 987-1000
19. Sheath PHA, Sokal RR (1973) Numerical Taxonomy: The Principles and Practice of Numerical Classification. Freeman, San Fransisco
20. Yap IV, Nelson RJ (1996) WINBOOT. A Program for Performing Bootstrap Analysis of Binary Data to Determine the Confidence Limits of UPGMA-based Dendrograms. IRRI Discussion Paper Ser No. 14, International Rice Research Institute, Los Banos, Philippines
21. Zabeau M, Vos P (1993) Selective restriction fragment amplification: a general method for DNA fingerprinting. European Patent Application No. 92402629 (Publ No. 0534858A1)
22. Zhu J, Gale MD, Quarrie S, Jackson MT, Bryan GJ (1998) AFLP markers for study of rice biodiversity. Theor Appl Genet 96:602-611