Genetic analysis of some Egyptian rice genotypes using RAPD, SSR and AFLP

African Journal of Biotechnology

Volumn 4, Issue 9, 2005, Pages 882-890

  Saker, Mahmoud M ^b   Youssef, Sawsan S ^a   Abdallah, Naglaa A ^a   Bashandy, Hany S ^a   El Sharkawy, Ahmed M ^a  

^a CAIRO UNIVERSITY   (Egypt)

^b NATIONAL RESEARCH CENTRE   (Egypt)

Author keywords

DNA markers; Genotype identification; Oryza sativa

Indexed keywords

PRIMER DNA;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ARTICLE; CLUSTER ANALYSIS; DNA DETERMINATION; GENETIC ANALYSIS; GENETIC POLYMORPHISM; GENETIC VARIABILITY; GENOTYPE; INFORMATION; MOLECULE; PLANT; RANDOM AMPLIFIED POLYMORPHIC DNA; RICE;

ORYZA SATIVA;

EID: 24944481542     PISSN: 16845315     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (36)

1. Ahmed F (1999). Random amplified polymorphic DNA (RAPD) analysis reveals genetic relationships among annual Cicer species. Theor. Appl. Genet. (98): 657- 663.
2. Archak S, Gaikwad B, Gautam D, Rao V, Swamy M, Karihaloo L (2003). Comparative assessment of DNA fingerprinting techniques (RAPD, ISSR and AFLP) for genetic analysis of cashew (Anacardium occidentale L.) accessions of India. Genome 46: 362-369.
3. Bassam JB, Caetano-Anolles G, Gresshoff PM (1991). Fast and sensitive silver staining of DNA in polyacrylamide gels. Anal. Biochem. 196: 80-83.
4. Bligh HJ, Blackhall N, Edwards K, McClung A (1999). Using amplified fragment length polymorphism and simple sequence length polymorphism to identify cultivars of brown and white milled rice. Crop Sci. (39): 1715-1721.
5. Botstein D, White R, Skolnick M, Davis R (1980). Construction of a genetic linkage map in man using restriction fragment length polymorphism. Am. J. Genet. (32): 314 - 331.
6. Choudhury R, Kohli S, Srinivasan K, Mohapatra T, Sharma R (2001). Identification and classification of aromatic rice based on DNA finger printing. Euphytica (118): 243-251.
7. Corazza-Munnes M, Machado M, Nunes W, Cristofani M, Targon M (2002). Assessment of genetic variability in grapefruits (Citrus paradise Macf.) and Pummelos (C. maxima (Burn) Merr) using RAPD and SSR markers. Euphytica 126:169-176.
8. Cregan B (1992). Simple sequence repeat DNA length polymorphisms. Probe 2: 18-22.
9. Ferdinandez Y, Coulman B (2002). Evaluating genetic variations and relationships among two bromegrass species and their hybrid using RAPD and AFLP markers. Euphytica 125: 281-291.
10. Ge S, Giancarlo O, Barbara S, Zhi G, DE-yuan H (1999). RAPD variation within and between natural populations of the wild rice Oryza rufipogon from China and Brazil. Heredity (82): 636-644.
11. Higgins M (1984). Synthesis regulation of major protein seeds. Ann. Rev. Plant Physiol. (35): 191-221.
12. Krawczak M, Schmidtke J (1994). Introduction in DNA fingerprinting. Bio scientific publishers Ltd, Oxford, UK. pp. 1-16.
13. Luis F, Fabio E, Alba A, Geraldo G, Mirian D, Mirle C, Joe T (1999). Analyses of genetic diversity in Cuban rice varieties using isozyme, RAPD and AFLP markers. Euphytica (109): 107-115.
14. Mackill DJ (1995). Classifying Japonica rice cultivars with RAPD markers. Crop Sci. (35): 889-894.
15. Maroof M, Yang G, Zhang Q, Gravois K (1997). Correlation between molecular marker distance and hybrid performance in U.S. southern long grain rice. Crop Sci. (37): 145-150.
16. McGregor C, Lambert C, Geryling M, Louw J, Warnich L (2000). A comparative assessment of DNA fingerprinting techniques (RAPD, ISSR, AFLP and SSR) in tetraploid potato (Solanum tuberosum) germplasm. Euphytica 13:135-144.
17. Mueller U, Wolfenbarger L (1999). AFLP genotyping and fingerprinting. Tree (14) 389: 394.
18. Ovesna J, Polakova K, Lisova L (2002). DNA analyses and their applications in plant breeding. Czech. J. Genet. Plant Breed. (38): 29-40.
19. Palombi M, Damiano, C (2002). Comparison between RAPD and SSR molecular markers in detecting genetic variations in kiwifruit (Actinida deliciosa A. chev.). Plant Cell Rep. 20 (11): 1061-1066.
20. Panaud O, Chenayd X, Mccouch S (1996). Development of microsatellite markers and characterization of simple sequence length polymorphism (SSLP) in rice (Oryza sativa L.). Mol. Gen. Genet. (252): 597-607.
21. Ren F, Lu B, Li S, Huang J, Zhu Y (2003). A comparative study of genetic relationships among the AA-genome Oryza species using RAPD and SSR markers. Theor. Appl. Genet. (108): 113-120.
22. Rohlf J (1993). Numerical taxonomy and multivarieties analysis system NTSys-PC version 1.80 Exeter software, New York.
23. Saker M, Nagchtigall M, Kuehne T (2005). A comparative assessment of DNA fingerprinting by RAPD, SSR and AFLP in genetic analysis of some barley genotypes. Egypt. J. Genetics and Cytology 34: 81-97.
24. Sasaki T (1999). Current status of and future prospects for genome analysis in rice. K. Shimamoto (eds.) " Moleclular Biology of Rice". Springer- Verlag pub., Tokyo. pp. 3-4.
25. Sasaki T (2002). Rice genomics to understand rice plant as an assembly of genetic codes. Current Sci. (83): 834- 839.
26. Thanh ND, Zheng H, Dong N, Tinh L, Ali M, Nguyen H (1999). Genetic variation in root morphology and microsatellite DNA loci in upland rice (Oryza sativa L.) from Vietnam. Euphytica (105): 43-51.
27. Virk S, Zhu J, Newbury H, Bryan G, Jackson M, Ford-Lloyd B (2000). Effectiveness of different classes of molecular markers for classifying and revealing variations in rice (Oryza sativa) germplasm. Euphytica 112: 275-284.
28. Vos P, Hogers R, Bleeker M, Reijans M, Van de Lee T, Hornes M, Frijters A, Pot J, Peleman J, Kuiper M, Zabeau M (1995). AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res. 23: 4407-4414.
29. Walbot V (1988). Preparation of DNA from single rice seedling. Rice Genet. Newslett. 5:149-151.
30. Weising K, Atkinson G, Gardner C (1995). Genomic fingerprinting by microsatellite-primed PCR: a critical evaluation. PCR Methods and Applications 4: 249-255.
31. Welsh J, McClelland M (1990). Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res. 18: 7213-7218.
32. Williams K, Kubelik A, Livak K, Rafalski J, Tingey V (1990). DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acid Res. 18: 6531-6535.
33. Wu K, Tanksley S (1993). Abundance, polymorphism and genetic mapping of microsatellites in rice. Mol. Gen. Genet. (241): 225-235.
34. Xiao J, Li J, Yuan L, Mccouch S, Tanksley SD (1996). Genetic diversity and its relationship to hybrid performance and heterosis in rice as revealed by PCR- based markers. Theor. Appl. Genet.(92) :637-643.
35. Yang GP, Maroof M, Xu C, Zhang Q, Biyashev R (1994). Comparative analysis of microsatellite DNA polymorphism inland races and cultivars of rice. Mol. Gen. Genet. (245):187-194.
36. Zhu J, Gale M, Qurrie S, Jackson M, Bryan B (1998). AFLP markers for the study of rice biodiversity. Theor. Appl. Genet. (96): 601-611.