Comparative analysis of agro-morphology, grain quality and aroma traits of traditional and Basmati-type genotypes of rice, Oryza sativa L.

Plant Breeding

Volumn 131, Issue 4, 2012, Pages 486-492

  Roy, Somnath ^a,b   Banerjee, Amrita ^a,c   Senapati, Bijoy K ^a   Sarkar, Gurupada ^a  

^a BIDHAN CHANDRA KRISHI VISWAVIDYALAYA   (India)

^b NATIONAL BUREAU OF PLANT GENETIC RESOURCES   (India)

^c ICAR RESEARCH COMPLEX FOR NEH REGION   (India)

Author keywords

Aroma; BADH2; Correlation; Grain quality; Rice; Sequence analysis

Indexed keywords

ORYZA SATIVA;

EID: 84864015996     PISSN: 01799541     EISSN: 14390523     Source Type: Journal    
DOI: 10.1111/j.1439-0523.2012.01967.x     Document Type: Article

References (44)

1. Aggarwal, R. K., V. V. Shenoy, J. Ramadevi, R. Rajkumar, and L. Singh, 2002: Molecular characterization of some Indian Basmati and other elite rice genotypes using fluorescent-AFLP. Theor. Appl. Genet. 105, 680-690.
2. Amarawathi, Y., R. Singh, A. K. Singh, V. P. Singh, T. Mohapatra, T. R. Sharma, and N. K. Singh, 2008: Mapping of quantitative trait loci for basmati quality traits in rice (Oryza sativa L.). Mol. Breed. 21, 49-65.
3. Bourgis, F., R. Guyot, H. Gherbi, E. Tailliez, I. Amabile, J. Salse, M. Lorieux, M. Delseny, and A. Ghesquière, 2008: Characterization of the major fragrance gene from an aromatic japonica rice and analysis of its diversity in Asian cultivated rice. Theor. Appl. Genet. 117, 353-368.
4. Bradbury, L. M., T. L. Fitgerald, R. J. Henry, Q. Jin, and D. L. E. Waters, 2005a: The gene for fragrance in rice. Plant Biotechnol. J. 3, 363-370.
5. Bradbury, L. M. T., R. J. Henry, Q. Jin, R. F. Reinke, and D. L. E. Waters, 2005b: A perfect marker for fragrance genotyping in rice. Mol. Breed. 16, 279-283.
6. Bradbury, L. M. T., S. A. Gillies, D. J. Brushett, D. L. E. Waters, and R. J. Henry, 2008: Inactivation of an aminoaldehyde dehydrogenase is responsible for fragrance in rice. Plant Mol. Biol. 68, 439-449.
7. Buttery, R. G., L. C. Ling, B. O. Juliano, and J. G. Turnbaugh, 1983: Cooked rice aroma and 2-acetyl-1-pyrroline in rice. J. Agric. Food Chem. 31, 823-826.
8. Chandraratna, M. F., 1964: Genetics and Breeding of Rice, 389. Longman, London.
9. Chaturvedi, H. P., and D. M. Mourya, 2005: Genetic divergence analysis in rice (Oryza sativa L.). Adv. Plant Sci. 18, 349-353.
10. Chen, S., Y. Yang, W. Shi, Q. Ji, F. He, Z. Zhang, Z. Cheng, X. Liu, and M. Xu, 2008: Badh2, encoding betaine aldehyde dehydrogenase, inhibits the biosynthesis of 2-acetyl-1-pyrroline, a major component in rice fragrance. Plant Cell 20, 1850-1861.
11. Fitzgerald, M. A., N. R. Sackville-Hamilton, M. N. Calingacion, H. A. Verhoeven, and V. M. Butardo, 2008: Is there a second fragrance gene in rice? Plant Biotechnol. J. 6, 416-423.
12. Fitzgerald, M. A., S. R. McCouch, and R. D. Hall, 2009: Not just a grain of rice: the quest for quality. Trends Plant Sci. 14, 133-139.
13. Garris, A. J., S. R. McCouch, and S. Kresovich, 2003: Population structure and its effect on haplotype diversity and linkage disequilibrium surrounding the xa5 locus of rice (Oryza sativa L.). Genetics 165, 759-769.
14. Glaszmann, J. C., 1987: Isozymes and classification of Asian rice varieties. Theor. Appl. Genet. 42, 233-240.
15. Heda, G. D., and G. M. Reddy, 1986: Studies on the inheritance of amylose content and gelatinization temperature in rice (Oryza sativa L.). Genet. Agrar. 40, 1-8.
16. Hien, N. L., W. A. Sarhadi, Y. Hirata, and Y. Oikawa, 2007: Genetic diversity of morphological responses and the relationships among Asia aromatic rice (Oryza sativa L.) cultivars. Tropics 16, 343-355.
17. Jain, S., R. Jain, and S. R. McCouch, 2004: Genetic analysis of Indian aromatic and quality rice (Oryza sativa L.) germplasm using panels of fluorescently-labelled microsatellite markers. Theor. Appl. Genet. 109, 965-977.
18. Juliano, B. O., C. M. Perez, A. B. Blakeney, D. T. Castilliano, E. T. Lapis, V. V. S. Murty, C. M. Paule, and B. D. Webb, 1981: International cooperative testing on the amylose content of milled rice. Starch 33, 157-162.
19. Khush, G. S., 2000: Taxonomy and origin of rice. In: R. K. Singh, U. S. Singh, and G. S. Khush (eds), Aromatic Rices, 5-13. Oxford & IBH Publication, New Delhi.
20. Koutroubas, S. D., F. Mazzini, B. Pons, and D. A. Ntanos, 2004: Grain quality variation and relationships with morpho-physiological traits in rice (Oryza sativa L.) genetic resources in Europe. Field Crops Res. 86, 115-130.
21. Kovach, M. J., M. N. Calingacion, M. A. Fitzgerald, and S. R. McCouch, 2009: The origin and evolution of fragrance in rice (Oryza sativa L.). Proc. Natl. Acad. Sci. U.S.A. 106, 14444-14449.
22. Kumar, I., and G. S. Khush, 1986: Genetics of amylose content in rice (Oryza sativa L.). J. Genet. 65, 1-11.
23. Kumar, I., and G. S. Khush, 1987: Genetic analysis of different amylose levels in rice. Crop Sci. 27, 1167-1172.
24. Kumar, S., N. Shobha Rani, and K. Krishnaiah, 1996: Problems and prospects of food grain aromatic rice in India. In: IRRI (ed.), Rep INGER Monitoring Visit Fine Grain Aromatic Rice India, Iran, Pakistan, and Thailand, 21-29. IRRI Publication, Manila.
25. Kuo, S. M., S. Y. Chou, A. Z. Wang, T. H. Tseng, F. S. Chueh, H. E. Yen, and C. S. Wang, 2005: The betaine aldehyde dehydrogenase (BAD2) gene is not responsible for the aroma trait of SA0420 rice mutant derived by sodium azide mutagenesis. 5th International Rice Genetics Symposium, 166-167. November 19-23. IRRI, Philippines.
26. Little, R. R., G. B. Hilder, and E. H. Dawson, 1958: Differential effect of dilute alkali on 25 varieties of milled white rice. Cereal Chem. 35, 111-126.
27. McKenzie, K. S., and J. N. Rutger, 1983: Genetic analysis of amylose content, alkali spreading score, and grain dimensions in rice. Crop Sci. 23, 306-319.
28. Mishra, L. K., A. K. Sarawgi, and R. K. Mishra, 2003: Genetic diversity for morphological and quality traits in rice (Oryza sativa L.). Adv. Plant Sci. 16, 287-293.
29. Nagaraju, M., K. K. Mohanty, D. Chaudhary, and C. A. Gangadharan, 1991: Simple technique to detect scent in rice. Oryza 28, 109-110.
30. Nagaraju, J., M. Kathirvel, R. R. Kumar, E. A. Siddiq, and S. E. Hasnain, 2002: Genetic analysis of traditional and evolved Basmati and non-Basmati rice varieties by using fluorescence-based ISSR-PCR and SSR markers. Proc. Natl. Acad. Sci. U.S.A. 99, 5836-5841.
31. Navarro, M., V. Butardo, C. Bounphanousay, R. Reano, R. S. Hamilton, H. Verhoeven, and M. Fitzgerald, 2007: The good, the BAD and the fragrant-understanding fragrance in rice. Abstract of International Network on Quality Rices-Clearing Old Hurdles with New Science: Improving Rice Grain Quality. April 17-19, 16. IRRI, Philippines.
32. Niu, X., W. Tang, W. Huang, G. Ren, Q. Wang, D. Luo, Y. Xiao, S. Yang, F. Wang, B. R. Lu, F. Gao, T. Lu, and Y. Liu, 2008: RNAi-directed down regulation of OsBADH2 results in aroma (2-acetyl-1-pyrroline) production in rice (Oryza sativa L.). BMC Plant Biol. 8, 1-10.
33. Paule, C. M., and J. J. Powers, 1989: Sensory and chemical examination of aromatic and non aromatic rices. J. Food Sci. 54, 343-346.
34. Richharia, R. H., and S. Govindaswamy, 1966: Rices in India, 346. Sciantific Book Co., Patna, India.
35. Richharia, R. H., B. Misra, and V. A. Kulkarni, 1965: Studies in the world genetic stock of rice. IV. Distribution of scented rice. Oryza 2, 57-59.
36. Roy, S., A. Banerjee, and B. K. Senapati, 2009: Evaluation of some aromatic rice germplasm in new alluvial soil of West Bengal. Environ. Ecol. 27, 1240-1242.
37. Sakthivel, K., R. M. Sundaram, N. Shobha Rani, S. M. Balachandran, and C. N. Neeraja, 2009a: Genetic and molecular basis of fragrance in rice. Biotechnol. Adv. 27, 468-473.
38. Sakthivel, K., N. Shobha Rani, M. K. Pandey, A. K. P. Sivaranjani, C. N. Neeraja, S. M. Balachandran, M. Sheshu Madhav, B. C. Viraktamath, G. S. V. Prasad, and R. M. Sundaram, 2009b: Development of a simple functional marker for fragrance in rice and its validation in Indian Basmati and non-Basmati fragrant rice varieties. Mol. Breed. 24, 185-190.
39. Shi, W., Y. Yang, S. Chen, and M. Xu, 2008: Discovery of a new fragrance allele and the development of functional markers for the breeding of fragrant rice varieties. Mol. Breed. 22, 185-192.
40. th International food conservation, November, 1998, Mysore, India, 24-27.
41. Singh, R. K., U. S. Singh, G. S. Khush, R. Rohilla, J. P. Singh, G. Singh, and K. S. Shekhar, 2000a: Small and medium grained aromatic rices of India. in: R. K. Singh, U. S. Singh, and G. S. Khush (eds), Aromatic Rices, 155-177. Oxford & IBH Publication, New Delhi.
42. Singh, R. K., P. L. Gautam, S. Saxena, and S. Singh, 2000b: Scented rice germplasm: conservation, evaluation and utilization. In: R. K. Singh, U. S. Singh, and G. S. Khush (eds), Aromatic Rices, 107-133. Oxford & IBH Publication, New Delhi.
43. Sun, S. H., F. Y. Gao, X. J. Lu, X. J. Wu, X. D. Wang, G. J. Ren, and H. Luo, 2008: Genetic analysis and gene fine mapping of aroma in rice (Oryza sativa L. Cyperales, Poaceae). Genet. Mol. Biol. 31, 532-538.
44. Widjaja, R., J. D. Craske, and M. Wootton, 1996: Changes in volatile components of paddy, brown and white fragrant rice during storage. J. Sci. Food Agric. 71, 218-224.