Analyses of genetic diversity in Cuban rice varieties using isozyme, RAPD and AFLP markers

Euphytica

Volumn 109, Issue 2, 1999, Pages 107-115

  Fuentes, Jorge Luis ^a   Escobar, Fabio ^b   Alvarez, Alba ^a   Gallego, Geraldo ^b   Duque, Miriam Cristina ^c   Ferrer, Mirle ^a   Deus, Juan Enrrique ^d   Tohme, Joe M ^b  

^a Ctr Estud Aplicados Desarrollo N   (Cuba)

^b AA 6713   (Colombia)

^c Ctro Internacional de Agric Trop   (Colombia)

^d Instituto de Investigaciones del Arroz (IIA)   (Cuba)

Author keywords

AFLP; DNA fingerprinting; Isozymes; RAPD; Rice

Indexed keywords

ALCOHOL DEHYDROGENASE; AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ESTERASE; GENETIC DIVERSITY; HETEROZYGOSITY; PEROXIDASE; PLANT BREEDING; PLANT GENETICS; RANDOM AMPLIFIED POLYMORPHIC DNA; STATISTICAL ANALYSIS;

EID: 0032825469     PISSN: 00142336     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1003672729948     Document Type: Article

References (39)

1. Aquino, R.C. & P.R. Jennings, 1966. Inheritance and significance of semidwarfism in an indica rice variety. Crop Sci 6: 551-554.
2. Caetano-Anollés, G., B.J. Bassam & P.M. Gresshoff, 1991. DNA amplification fingerprinting: A strategy for genome analysis. Plant Mol Biol Reporter 4: 294-307.
3. Cao, D. & J.H. Oard, 1997. Pedigree and RAPD analysis of commercial U.S. rice cultivars. Crop Sci 37: 1630-1635.
4. Cuevas-Perez, F.E., E.P. Guimaraes, L.E. Berrio & D.I. Gonzales, 1992. Genetic base of the irrigated rice in Latin America and the Caribbean. Crop Sci 32: 1054-1059.
5. Dellaporta, S.L., J. Wood & J.B. Hicks, 1983. A plant DNA minipreparation: version II. Plant Mol Biol Rep 1: 19-21
6. Dice, L.R., 1945. Measures of the amount of ecologic association between species. Ecology 26: 297-302.
7. Dos Santos, J.B., J. Nienhuis, P. Skroch, J. Tivang & M.K. Slocum, 1994. Comparison of RAPD and RFLP genetic markers in determining genetic similarity among Brassica oleracea L. genotypes. Theor Appl Genet 87: 909-915.
8. Fuentes, J.L., E. Padrón & L. Iglesias, 1994. Estudio de la Variabilidad Isoenzimática en Mutantes de Arroz Obtenidos por Acción de Rayos Gamma y Neutrones Rápidos. Cultivos Tropicales (La Habana) 15(1): 53-56.
9. Foster, K.W. & J.N. Rutger, 1978. Inheritance to semidwarfism in rice. Genetic 82: 559-574.
10. Ghareyazie, B., N. Huang, G. Second & J. Bennett, 1995. Classification of rice germplasm. I. Analysis using ALP and PCR-based RFLP. Theor Appl Genet 91: 218-227.
11. Glaszmann, J.C., 1982. Variabilité enzymatique en riz (Oryza saliva L.) con importance pour la compréhension de la structure écogéographique de l'espèce. In mémoires et travaux de l'Irat. Monograph no. 9, 126 pp.
12. Glaszmann, J.C., 1987. Isozymes and classification of Asian rice varieties. Theor Appl Genet 74: 21-30.
13. Hallden, C., N.O. Nilsson, I.M. Rading & T. Saell, 1994. Evaluation of RFLP and RAPD markers in comparison of Brassica napus breeding lines. Theor Appl Genet 88: 123-128.
14. Iglesias, L., H. Lima & LP. Simon, 1974. Isozyme identification of zygotic and nucellar seedlings in citrus. J Hered 65: 81-84.
15. Jones, C.J., K.J. Edwards, S. Castaglione, M.O. Winfield, F. Sala, C. van de Wiel, G. Bredemeijer, B. Vosman, M. Matthes, A. Daly, R. Brettschneider, P. Bettini, M. Buiatti, E. Maestri, A. Malcevschi, N. Marmiroli, R. Aert, G. Volckaert, J. Rueda, R. Linacero, A. Vazquez & A. Karp, 1997. Reproducibility testing of RAPD, AFLP and SSR markers in plants by a network of European laboratories. Molecular Breeding 3: 381-390.
16. Loarce, Y., R. Gallego & E. Ferrer, 1996. A comparative analysis of the genetic relationships between rye cultivars using RFLP and RAPD markers. Euphytica 88: 107-115.
17. Mantel, N., 1967. The detection of disease clustering and generalized regression approach. Cancer Res 27: 209-220.
18. Mackill, D.J., 1995. Classifying Japonica rice cultivars with RAPD markers. Crop Sei 35: 889-894.
19. Mackill, D.J., Z. Zhang, E.D. Redoña & P.M. Colowit, 1996. Level of polymorphism and genetic mapping of AFLP markers in rice. Genome 39: 969-977.
20. Maheswaran, M., P.K. Subudhi, S. Nandi, J.C. Xu, A. Parco, D.C. Yang & N. Huang, 1997. Polymorphism, distribution, and segregation of AFLP markers in a doubled hapliod rice population. Theor Appl Genet 94: 39-45.
21. Milbourne, D., R. Meyer, J.E. Bradshaw, E. Baird, N. Bonar, J. Provan, W. Powell & R. Waugh, 1997. Comparison of PCR-based markers systems for the analysis of genetic relationship in cultivated potato. Mol. Breed 3: 127-136.
22. Mullis, K.B. & F.A. Faloona, 1987. Specific synthesis of DNA in vitro via a polymerase-catalyzed chain reaction. Methods Enzymol 155: 335-350.
23. Nei, M., 1973. Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci USA 70: 3321-3323.
24. Nei, M. & W.H. Li, 1979. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc Natl Acad Sci USA 76: 5269-5273.
25. Parsons, B.J., H.J. Newbury, M.T. Jackson & B.V. Ford-Lloyd, 1997. Contrasting genetic diversity relationships are reveled in rice (Oryza saliva L.) using different marker types. Mol Breed 3: 115-125.
26. Peng, J.Y., J.C. Glaszmann & S.S. Virmani, 1988. Heterosis and Isozyme divergence in indica rice. Crop Sci 28: 561-563.
27. Penner, G.A., A. Bush, R. Wise, W. Kim, L. Domier, K. Kasha, A. Laroche, G. Scoles, S.J. Molnar & G. Fedack, 1993. Reproducibility of random amplified polymorphic DNA (RAPD) analysis among laboratories. PCR Methods Appl 2: 341-345.
28. Powell, W., M. Morgante, C. Andre, M. Hanafey, J. Vogel, S. Tingey & A. Rafalski, 1996. The utility of RFLP, RAPD, AFLP and SSRP (microsatellite) markers for germplasm analysis. Mol Breed 2: 225-238.
29. Qian, H.R., J.Y. Zhuang, H.X. Lin, J. Lu & K.L. Zheng, 1995. Identification of a set of RFLP probes for subspecies differentiation in Oryza saliva L. Theor Appl Genet 90: 878-884.
30. Rohlf, F.J., 1993. NTSYS.PC. Numerical Taxonomy and Multivariate, Analysis System. Version 1.8. Exeter Software, Setauket, New York.
31. Sokal, R.R. & C.D. Michener, 1958. A statistical method for evaluating systematic relationships. Univ Kans Sci Bull 38: 1409-1438.
32. Thomas, C.M., P. Vos, M. Zabeau, D.A. Jones, K.A. Norcott, B.P. Chadwick & J.D.G. Jones, 1995. Identification of amplified restriction fragment polymorphism (AFLP) markers tightly linked to the tomato CF-9 gene for resistence to Cladosporium fulvum. Plant J 8: 785-794.
33. Tohme, J., D.O. González, S. Beebe & M.C. Duque, 1996. AFLP analysis of gene pools a wild bean core collection. Crop Science 36: 1375-1384.
34. Virk, P.S., H.J. Newbury, M.T. Jackson & B.V Ford-Lloyd, 1995. The identification of duplicate accessions within a rice germplasm collection using RAPD analysis. Theor Appl Genet 90: 1049-1055.
35. Vos, P., R. Hogers, M. Bleeker, M. Reijans, T. Van de Lee, M. Homes, A. Frijters, J. Pot, J. Peleman, M. Kuiper & M. Zabeu, 1995. AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res 23(21): 4407-4414.
36. Welsh, J. & M. McClelland, 1990. Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res 18: 7213-7218.
37. Williams, J.G.K., A.R. Kubelik, K.J. Livak, J.A. Rafalski & S.V. Tingey, 1990. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res 18: 6531-6535.
38. Wu, K.S. & S.D. Tanksley, 1993. Abundance, polymorphism and genetic mapping of microsatellites in rice. Mol & Gen Genet 241: 225-235.
39. Zheng, K., H. Qian, B. Shen, J. Zhuang, H. Lin & J. Lu, 1994. RFLP-based phylogenetic analysis of compatibility varieties in Oryza saliva L. Theor Appl Genet 88: 65-69.