-
1
-
-
84898822986
-
Forensic DNA, analysis for animal protection and biodiversity conservation: a review
-
Iyengar A. Forensic DNA, analysis for animal protection and biodiversity conservation: a review. J Nat Conserv. 2014;22(3):195–205.
-
(2014)
J Nat Conserv
, vol.22
, Issue.3
, pp. 195-205
-
-
Iyengar, A.1
-
2
-
-
84868232013
-
DNA barcoding as a new tool for food traceability
-
COI: 1:CAS:528:DC%2BC3sXhvFaqug%3D%3D
-
Galimberti A, De Mattia F, Losa A, Bruni I, Federici S, Casiraghi M, et al. DNA barcoding as a new tool for food traceability. Food Res Int. 2013;50(1):55–63.
-
(2013)
Food Res Int
, vol.50
, Issue.1
, pp. 55-63
-
-
Galimberti, A.1
De Mattia, F.2
Losa, A.3
Bruni, I.4
Federici, S.5
Casiraghi, M.6
-
3
-
-
77955922880
-
A review of current PCR-based methodologies for the authentication of meats from game animal species
-
COI: 1:CAS:528:DC%2BC3cXhtVKis7zJ
-
Fajardo V, González I, Rojas M, García T, Martín R. A review of current PCR-based methodologies for the authentication of meats from game animal species. Trends Food Sci Technol. 2010;21(8):408–21.
-
(2010)
Trends Food Sci Technol
, vol.21
, Issue.8
, pp. 408-421
-
-
Fajardo, V.1
González, I.2
Rojas, M.3
García, T.4
Martín, R.5
-
4
-
-
49649113075
-
DNA barcoding detects market substitution in North American seafood
-
COI: 1:CAS:528:DC%2BD1cXhtVarsL3F
-
Wong EH-K, Hanner RH. DNA barcoding detects market substitution in North American seafood. Food Res Int. 2008;41(8):828–37.
-
(2008)
Food Res Int
, vol.41
, Issue.8
, pp. 828-837
-
-
Wong, E.H.-K.1
Hanner, R.H.2
-
5
-
-
80054001297
-
FISH-BOL and seafood identification: geographically dispersed case studies reveal systemic market substitution across Canada
-
COI: 1:CAS:528:DC%2BC3MXht12is77L
-
Hanner R, Becker S, Ivanova NV, Steinke D. FISH-BOL and seafood identification: geographically dispersed case studies reveal systemic market substitution across Canada. Mitochondrial DNA. 2011;22(sup1):106–22.
-
(2011)
Mitochondrial DNA
, vol.22
, Issue.sup1
, pp. 106-122
-
-
Hanner, R.1
Becker, S.2
Ivanova, N.V.3
Steinke, D.4
-
6
-
-
38349006770
-
Potential use of DNA barcodes in regulatory science: applications of the Regulatory Fish Encyclopedia
-
COI: 1:CAS:528:DC%2BD1cXht1WlurY%3D
-
Yancy HF, Zemlak TS, Mason JA, Washington JD, Tenge BJ, Nguyen N-LT, et al. Potential use of DNA barcodes in regulatory science: applications of the Regulatory Fish Encyclopedia. J Food Protect. 2008;71(1):210–7.
-
(2008)
J Food Protect
, vol.71
, Issue.1
, pp. 210-217
-
-
Yancy, H.F.1
Zemlak, T.S.2
Mason, J.A.3
Washington, J.D.4
Tenge, B.J.5
Nguyen, N.-L.T.6
-
7
-
-
84975192345
-
-
CITES. CITES. 2015. Accessed 6 Apr
-
CITES. CITES. 2015. Accessed 6 Apr 2016.
-
(2016)
-
-
-
8
-
-
84975200258
-
-
Speciesplus. Speciesplus. . Accessed 15 Oct 2015
-
Speciesplus. Speciesplus. 2015. Accessed 15 Oct 2015.
-
(2015)
-
-
-
9
-
-
47249149777
-
Authentication of Saussurea lappa, an endangered medicinal material, by ITS DNA and 5S rRNA sequencing
-
COI: 1:CAS:528:DC%2BD1cXpvFKlsrw%3D
-
Chen F, Chan H, Wong K-L, Wang J, Yu M-T, But P, et al. Authentication of Saussurea lappa, an endangered medicinal material, by ITS DNA and 5S rRNA sequencing. Planta Med. 2008;74(8):889–92.
-
(2008)
Planta Med
, vol.74
, Issue.8
, pp. 889-892
-
-
Chen, F.1
Chan, H.2
Wong, K.-L.3
Wang, J.4
Yu, M.-T.5
But, P.6
-
10
-
-
42949114454
-
DNA barcoding the floras of biodiversity hotspots
-
COI: 1:CAS:528:DC%2BD1cXjtVSis7c%3D
-
Lahaye R, Van der Bank M, Bogarin D, Warner J, Pupulin F, Gigot G, et al. DNA barcoding the floras of biodiversity hotspots. Proc Natl Acad Sci U S A. 2008;105(8):2923–8.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, Issue.8
, pp. 2923-2928
-
-
Lahaye, R.1
Van der Bank, M.2
Bogarin, D.3
Warner, J.4
Pupulin, F.5
Gigot, G.6
-
11
-
-
84886751048
-
Forensic identification of CITES protected slimming Cactus (Hoodia) using DNA barcoding
-
COI: 1:CAS:528:DC%2BC3sXhslSqtbbK
-
Gathier G, Niet T, Peelen T, Vugt RR, Eurlings M, Gravendeel B. Forensic identification of CITES protected slimming Cactus (Hoodia) using DNA barcoding. J Forensic Sci. 2013;58(6):1467–71.
-
(2013)
J Forensic Sci
, vol.58
, Issue.6
, pp. 1467-1471
-
-
Gathier, G.1
Niet, T.2
Peelen, T.3
Vugt, R.R.4
Eurlings, M.5
Gravendeel, B.6
-
12
-
-
84876716469
-
Forensic identification of Indian snakeroot (Rauvolfia serpentina Benth. ex Kurz) using DNA barcoding
-
COI: 1:CAS:528:DC%2BC3sXosFWnu70%3D
-
Eurlings M, Lens F, Pakusza C, Peelen T, Wieringa JJ, Gravendeel B. Forensic identification of Indian snakeroot (Rauvolfia serpentina Benth. ex Kurz) using DNA barcoding. J Forensic Sci. 2013;58(3):822–30.
-
(2013)
J Forensic Sci
, vol.58
, Issue.3
, pp. 822-830
-
-
Eurlings, M.1
Lens, F.2
Pakusza, C.3
Peelen, T.4
Wieringa, J.J.5
Gravendeel, B.6
-
13
-
-
84859625932
-
Next-generation sequencing technologies for environmental DNA research
-
COI: 1:CAS:528:DC%2BC38XptVGksLo%3D
-
Shokralla S, Spall JL, Gibson JF, Hajibabaei M. Next-generation sequencing technologies for environmental DNA research. Mol Ecol. 2012;21(8):1794–805.
-
(2012)
Mol Ecol
, vol.21
, Issue.8
, pp. 1794-1805
-
-
Shokralla, S.1
Spall, J.L.2
Gibson, J.F.3
Hajibabaei, M.4
-
14
-
-
80051688000
-
Field guide to next-generation DNA sequencers
-
COI: 1:CAS:528:DC%2BC3MXht1eqsLzK
-
Glenn TC. Field guide to next-generation DNA sequencers. Mol Ecol Resour. 2011;11(5):759–69.
-
(2011)
Mol Ecol Resour
, vol.11
, Issue.5
, pp. 759-769
-
-
Glenn, T.C.1
-
15
-
-
84883816660
-
Reliable, verifiable and efficient monitoring of biodiversity via metabarcoding
-
Ji Y, Ashton L, Pedley SM, Edwards DP, Tang Y, Nakamura A, et al. Reliable, verifiable and efficient monitoring of biodiversity via metabarcoding. Ecol Lett. 2013;16(10):1245–57.
-
(2013)
Ecol Lett
, vol.16
, Issue.10
, pp. 1245-1257
-
-
Ji, Y.1
Ashton, L.2
Pedley, S.M.3
Edwards, D.P.4
Tang, Y.5
Nakamura, A.6
-
16
-
-
84893181728
-
The HTS barcode checker pipeline, a tool for automated detection of illegally traded species from high-throughput sequencing data
-
Lammers Y, Peelen T, Vos RA, Gravendeel B. The HTS barcode checker pipeline, a tool for automated detection of illegally traded species from high-throughput sequencing data. BMC Bioinformatics. 2014;15:44.
-
(2014)
BMC Bioinformatics
, vol.15
, pp. 44
-
-
Lammers, Y.1
Peelen, T.2
Vos, R.A.3
Gravendeel, B.4
-
17
-
-
84859598363
-
Towards next-generation biodiversity assessment using DNA metabarcoding
-
COI: 1:CAS:528:DC%2BC38XptVGkt7w%3D
-
Taberlet P, Coissac E, Pompanon F, Brochmann C, Willerslev E. Towards next-generation biodiversity assessment using DNA metabarcoding. Mol Ecol. 2012;21(8):2045–50.
-
(2012)
Mol Ecol
, vol.21
, Issue.8
, pp. 2045-2050
-
-
Taberlet, P.1
Coissac, E.2
Pompanon, F.3
Brochmann, C.4
Willerslev, E.5
-
18
-
-
84873447259
-
The future of soil invertebrate communities in polar regions: different climate change responses in the Arctic and Antarctic?
-
Nielsen UN, Wall DH. The future of soil invertebrate communities in polar regions: different climate change responses in the Arctic and Antarctic? Ecol Lett. 2013;16(3):409–19.
-
(2013)
Ecol Lett
, vol.16
, Issue.3
, pp. 409-419
-
-
Nielsen, U.N.1
Wall, D.H.2
-
19
-
-
33747073504
-
Microbial diversity in the deep sea and the underexplored “rare biosphere
-
COI: 1:CAS:528:DC%2BD28Xotlyisb4%3D
-
Sogin ML, Morrison HG, Huber JA, Welch DM, Huse SM, Neal PR, et al. Microbial diversity in the deep sea and the underexplored “rare biosphere”. Proc Natl Acad Sci U S A. 2006;103(32):12115–20.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, Issue.32
, pp. 12115-12120
-
-
Sogin, M.L.1
Morrison, H.G.2
Huber, J.A.3
Welch, D.M.4
Huse, S.M.5
Neal, P.R.6
-
20
-
-
84901823211
-
Simultaneous assessment of the macrobiome and microbiome in a bulk sample of tropical arthropods through DNA metasystematics
-
COI: 1:CAS:528:DC%2BC2cXnsFWlt7w%3D
-
Gibson J, Shokralla S, Porter TM, King I, van Konynenburg S, Janzen DH, et al. Simultaneous assessment of the macrobiome and microbiome in a bulk sample of tropical arthropods through DNA metasystematics. Proc Natl Acad Sci U S A. 2014;111(22):8007–12.
-
(2014)
Proc Natl Acad Sci U S A
, vol.111
, Issue.22
, pp. 8007-8012
-
-
Gibson, J.1
Shokralla, S.2
Porter, T.M.3
King, I.4
van Konynenburg, S.5
Janzen, D.H.6
-
21
-
-
84860229555
-
Deep sequencing of plant and animal DNA contained within traditional Chinese medicines reveals legality issues and health safety concerns
-
COI: 1:CAS:528:DC%2BC38XmtFGitb8%3D
-
Coghlan ML, Haile J, Houston J, Murray DC, White NE, Moolhuijzen P, et al. Deep sequencing of plant and animal DNA contained within traditional Chinese medicines reveals legality issues and health safety concerns. PLoS Genet. 2012;8(4), e1002657.
-
(2012)
PLoS Genet
, vol.8
, Issue.4
-
-
Coghlan, M.L.1
Haile, J.2
Houston, J.3
Murray, D.C.4
White, N.E.5
Moolhuijzen, P.6
-
22
-
-
84901954160
-
Biological ingredient analysis of traditional Chinese medicine preparation based on high-throughput sequencing: the story for Liuwei Dihuang Wan
-
Cheng X, Su X, Chen X, Zhao H, Bo C, Xu J, et al. Biological ingredient analysis of traditional Chinese medicine preparation based on high-throughput sequencing: the story for Liuwei Dihuang Wan. Sci Rep. 2014;4:5147.
-
(2014)
Sci Rep
, vol.4
, pp. 5147
-
-
Cheng, X.1
Su, X.2
Chen, X.3
Zhao, H.4
Bo, C.5
Xu, J.6
-
23
-
-
84892657123
-
A universal method for species identification of mammals utilizing next generation sequencing for the analysis of DNA mixtures
-
Tillmar AO, Dell'Amico B, Welander J, Holmlund G. A universal method for species identification of mammals utilizing next generation sequencing for the analysis of DNA mixtures. PLoS One. 2013;8(12), e83761.
-
(2013)
PLoS One
, vol.8
, Issue.12
-
-
Tillmar, A.O.1
Dell'Amico, B.2
Welander, J.3
Holmlund, G.4
-
24
-
-
44449171351
-
A universal DNA mini-barcode for biodiversity analysis
-
Meusnier I, Singer GA, Landry JF, Hickey DA, Hebert PD, Hajibabaei M. A universal DNA mini-barcode for biodiversity analysis. BMC Genomics. 2008;9:214.
-
(2008)
BMC Genomics
, vol.9
, pp. 214
-
-
Meusnier, I.1
Singer, G.A.2
Landry, J.F.3
Hickey, D.A.4
Hebert, P.D.5
Hajibabaei, M.6
-
25
-
-
84865464866
-
How to open the treasure chest? Optimising DNA extraction from herbarium specimens
-
Särkinen T, Staats M, Richardson JE, Cowan RS, Bakker FT. How to open the treasure chest? Optimising DNA extraction from herbarium specimens. PLoS One. 2012;7(8), e43808.
-
(2012)
PLoS One
, vol.7
, Issue.8
-
-
Särkinen, T.1
Staats, M.2
Richardson, J.E.3
Cowan, R.S.4
Bakker, F.T.5
-
26
-
-
79957554546
-
Choosing and using a plant DNA barcode
-
COI: 1:CAS:528:DC%2BC3MXntVajt7Y%3D
-
Hollingsworth PM, Graham SW, Little DP. Choosing and using a plant DNA barcode. PLoS One. 2011;6(5), e19254.
-
(2011)
PLoS One
, vol.6
, Issue.5
-
-
Hollingsworth, P.M.1
Graham, S.W.2
Little, D.P.3
-
27
-
-
77954554269
-
An in silico approach for the evaluation of DNA barcodes
-
Ficetola GF, Coissac E, Zundel S, Riaz T, Shehzad W, Bessiere J, et al. An in silico approach for the evaluation of DNA barcodes. BMC Genomics. 2010;11:434.
-
(2010)
BMC Genomics
, vol.11
, pp. 434
-
-
Ficetola, G.F.1
Coissac, E.2
Zundel, S.3
Riaz, T.4
Shehzad, W.5
Bessiere, J.6
-
28
-
-
84931956994
-
Universal and blocking primer mismatches limit the use of high-throughput DNA sequencing for the quantitative metabarcoding of arthropods
-
Piñol J, Mir G, Gomez-Polo P, Agustí N. Universal and blocking primer mismatches limit the use of high-throughput DNA sequencing for the quantitative metabarcoding of arthropods. Mol Ecol Resour. 2015;15(4):819–30.
-
(2015)
Mol Ecol Resour
, vol.15
, Issue.4
, pp. 819-830
-
-
Piñol, J.1
Mir, G.2
Gomez-Polo, P.3
Agustí, N.4
-
29
-
-
84941286809
-
Can DNA-based ecosystem assessments quantify species abundance? Testing primer bias and biomass–sequence relationships with an innovative metabarcoding protocol
-
Elbrecht V, Leese F. Can DNA-based ecosystem assessments quantify species abundance? Testing primer bias and biomass–sequence relationships with an innovative metabarcoding protocol. PLoS One. 2015;10(7), e0130324.
-
(2015)
PLoS One
, vol.10
, Issue.7
-
-
Elbrecht, V.1
Leese, F.2
-
30
-
-
84859574767
-
Bioinformatic challenges for DNA metabarcoding of plants and animals
-
COI: 1:CAS:528:DC%2BC38XptVGksbw%3D
-
Coissac E, Riaz T, Puillandre N. Bioinformatic challenges for DNA metabarcoding of plants and animals. Mol Ecol. 2012;21(8):1834–47.
-
(2012)
Mol Ecol
, vol.21
, Issue.8
, pp. 1834-1847
-
-
Coissac, E.1
Riaz, T.2
Puillandre, N.3
-
31
-
-
84859590042
-
Environmental DNA
-
COI: 1:CAS:528:DC%2BC38XptVGksLw%3D
-
Taberlet P, Coissac E, Hajibabaei M, Rieseberg LH. Environmental DNA. Mol Ecol. 2012;21(8):1789–93.
-
(2012)
Mol Ecol
, vol.21
, Issue.8
, pp. 1789-1793
-
-
Taberlet, P.1
Coissac, E.2
Hajibabaei, M.3
Rieseberg, L.H.4
-
33
-
-
84864921261
-
Food authentication of commercially-relevant shrimp and prawn species: from classical methods to foodomics
-
COI: 1:CAS:528:DC%2BC38XhtFKlsbbE
-
Ortea I, Pascoal A, Canas B, Gallardo JM, Barros-Velazquez J, Calo-Mata P. Food authentication of commercially-relevant shrimp and prawn species: from classical methods to foodomics. Electrophoresis. 2012;33(15):2201–11.
-
(2012)
Electrophoresis
, vol.33
, Issue.15
, pp. 2201-2211
-
-
Ortea, I.1
Pascoal, A.2
Canas, B.3
Gallardo, J.M.4
Barros-Velazquez, J.5
Calo-Mata, P.6
-
34
-
-
84872903276
-
DNA barcoding as a reliable method for the authentication of commercial seafood products
-
Nicolè S, Negrisolo E, Eccher G, Mantovani R, Patarnello T, Erickson DL, et al. DNA barcoding as a reliable method for the authentication of commercial seafood products. Food Technol Biotech. 2012;50:387–98.
-
(2012)
Food Technol Biotech
, vol.50
, pp. 387-398
-
-
Nicolè, S.1
Negrisolo, E.2
Eccher, G.3
Mantovani, R.4
Patarnello, T.5
Erickson, D.L.6
-
35
-
-
77956011214
-
DNA detective: a review of molecular approaches to wildlife forensics
-
Alacs EA, Georges A, FitzSimmons NN, Robertson J. DNA detective: a review of molecular approaches to wildlife forensics. Forensic Sci Med Pathol. 2009;6(3):180–94.
-
(2009)
Forensic Sci Med Pathol
, vol.6
, Issue.3
, pp. 180-194
-
-
Alacs, E.A.1
Georges, A.2
FitzSimmons, N.N.3
Robertson, J.4
-
36
-
-
84907960035
-
Andel Tv, Boer Hd. Conservation of endangered wild harvested medicinal plants: use of DNA barcoding
-
Veldman S, Otieno J, Gravendeel B, Andel Tv, Boer Hd. Conservation of endangered wild harvested medicinal plants: use of DNA barcoding. Novel plant bioresources: applications in food, medicine and cosmetics. 2014:81–8.
-
(2014)
Novel plant bioresources: applications in food, medicine and cosmetics
, pp. 81-88
-
-
Veldman, S.1
Otieno, J.2
Gravendeel, B.3
-
37
-
-
31344432889
-
The promise of DNA barcoding for taxonomy
-
Hebert PD, Gregory TR. The promise of DNA barcoding for taxonomy. System Biol. 2005;54(5):852–9.
-
(2005)
System Biol
, vol.54
, Issue.5
, pp. 852-859
-
-
Hebert, P.D.1
Gregory, T.R.2
-
38
-
-
0025183708
-
Basic local alignment search tool
-
COI: 1:CAS:528:DyaK3MXitVGmsA%3D%3D
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. J Mol Biol. 1990;215(3):403–10.
-
(1990)
J Mol Biol
, vol.215
, Issue.3
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
40
-
-
84869196690
-
An update on DNA barcoding: low species coverage and numerous unidentified sequences
-
Kwong S, Srivathsan A, Meier R. An update on DNA barcoding: low species coverage and numerous unidentified sequences. Cladistics. 2012;28(6):639–644.
-
(2012)
Cladistics
, vol.28
, Issue.6
, pp. 639-644
-
-
Kwong, S.1
Srivathsan, A.2
Meier, R.3
-
41
-
-
34248149943
-
BOLD: The Barcode of Life Data System (http://www.barcodinglife.org)
-
COI: 1:CAS:528:DC%2BD2sXntVyksbc%3D
-
Ratnasingham S, Hebert PD. BOLD: The Barcode of Life Data System (http://www.barcodinglife.org). Mol Ecol Notes. 2007;7(3):355–64.
-
(2007)
Mol Ecol Notes
, vol.7
, Issue.3
, pp. 355-364
-
-
Ratnasingham, S.1
Hebert, P.D.2
-
42
-
-
33645760502
-
Towards writing the encyclopedia of life: an introduction to DNA barcoding
-
COI: 1:CAS:528:DC%2BD2MXhtlSjsrvF
-
Savolainen V, Cowan RS, Vogler AP, Roderick GK, Lane R. Towards writing the encyclopedia of life: an introduction to DNA barcoding. Philos Trans R Soc Lond B Biol Sci. 2005;360(1462):1805–11.
-
(2005)
Philos Trans R Soc Lond B Biol Sci
, vol.360
, Issue.1462
, pp. 1805-1811
-
-
Savolainen, V.1
Cowan, R.S.2
Vogler, A.P.3
Roderick, G.K.4
Lane, R.5
-
43
-
-
42949159834
-
DNA barcodes: genes, genomics, and bioinformatics
-
COI: 1:CAS:528:DC%2BD1cXjtVSjtb4%3D
-
Kress WJ, Erickson DL. DNA barcodes: genes, genomics, and bioinformatics. Proc Natl Acad Sci U S A. 2008;105(8):2761–2.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, Issue.8
, pp. 2761-2762
-
-
Kress, W.J.1
Erickson, D.L.2
-
46
-
-
84876153868
-
DNA barcoding in plants: evolution and applications of in silico approaches and resources
-
COI: 1:CAS:528:DC%2BC3sXltVyht74%3D
-
Bhargava M, Sharma A. DNA barcoding in plants: evolution and applications of in silico approaches and resources. Molec Phylogenet Evol. 2013;67(3):631–41.
-
(2013)
Molec Phylogenet Evol
, vol.67
, Issue.3
, pp. 631-641
-
-
Bhargava, M.1
Sharma, A.2
-
47
-
-
84879698145
-
Barcoding in the dark: a critical view of the sufficiency of zoological DNA barcoding databases and a plea for broader integration of taxonomic knowledge
-
COI: 1:CAS:528:DC%2BC3sXhtFShtbbM
-
Kvist S. Barcoding in the dark: a critical view of the sufficiency of zoological DNA barcoding databases and a plea for broader integration of taxonomic knowledge. Molec Phylogenet Evol. 2013;69(1):39–45.
-
(2013)
Molec Phylogenet Evol
, vol.69
, Issue.1
, pp. 39-45
-
-
Kvist, S.1
-
48
-
-
84869426553
-
Analytical approaches for DNA barcoding data – how to find a way for plants?
-
Sandionigi A, Galimberti A, Labra M, Ferri E, Panunzi E, De Mattia F, et al. Analytical approaches for DNA barcoding data – how to find a way for plants? Plant Biosyst. 2012;146(4):805–13.
-
(2012)
Plant Biosyst
, vol.146
, Issue.4
, pp. 805-813
-
-
Sandionigi, A.1
Galimberti, A.2
Labra, M.3
Ferri, E.4
Panunzi, E.5
De Mattia, F.6
-
49
-
-
34247244743
-
Comparative evaluation of different DNA extraction procedures from food samples
-
Bernardo GD, Gaudio SD, Galderisi U, Cascino A, Cipollaro M. Comparative evaluation of different DNA extraction procedures from food samples. Biotechnol Progr. 2007;23(2):297–301.
-
(2007)
Biotechnol Progr
, vol.23
, Issue.2
, pp. 297-301
-
-
Bernardo, G.D.1
Gaudio, S.D.2
Galderisi, U.3
Cascino, A.4
Cipollaro, M.5
-
50
-
-
84870653148
-
Tracing transgenic maize as affected by breadmaking process and raw material for the production of a traditional maize bread, broa
-
COI: 1:CAS:528:DC%2BC38XhvVyqs7bK
-
Fernandes TJ, Oliveira MBP, Mafra I. Tracing transgenic maize as affected by breadmaking process and raw material for the production of a traditional maize bread, broa. Food Chem. 2013;138(1):687–92.
-
(2013)
Food Chem
, vol.138
, Issue.1
, pp. 687-692
-
-
Fernandes, T.J.1
Oliveira, M.B.P.2
Mafra, I.3
-
51
-
-
77951297860
-
Effect of food processing on plant DNA degradation and PCR-based GMO analysis: a review
-
COI: 1:CAS:528:DC%2BD1MXhsFGmsLnM
-
Gryson N. Effect of food processing on plant DNA degradation and PCR-based GMO analysis: a review. Anal Bioanal Chem. 2010;396(6):2003–22.
-
(2010)
Anal Bioanal Chem
, vol.396
, Issue.6
, pp. 2003-2022
-
-
Gryson, N.1
-
52
-
-
10844296220
-
Comparison of three types of methods for the isolation of DNA from flours, biscuits and instant paps
-
Olexová L, Dovičovičová Ľ, Kuchta T. Comparison of three types of methods for the isolation of DNA from flours, biscuits and instant paps. Eur Food Res Technol. 2004;218(4):390–3.
-
(2004)
Eur Food Res Technol
, vol.218
, Issue.4
, pp. 390-393
-
-
Olexová, L.1
Dovičovičová, Ľ.2
Kuchta, T.3
-
53
-
-
33751313616
-
An inexpensive, automation-friendly protocol for recovering high-quality DNA
-
COI: 1:CAS:528:DC%2BD2sXmsl2ksw%3D%3D
-
Ivanova NV, Dewaard JR, Hebert PD. An inexpensive, automation-friendly protocol for recovering high-quality DNA. Mol Ecol Notes. 2006;6(4):998–1002.
-
(2006)
Mol Ecol Notes
, vol.6
, Issue.4
, pp. 998-1002
-
-
Ivanova, N.V.1
Dewaard, J.R.2
Hebert, P.D.3
-
54
-
-
77954959474
-
Effect of thermal treatment on the amplification and quantification of transgenic and non-transgenic soybean and maize DNA
-
Bergerová E, Hrnčírová Z, Stankovská M, Lopašovská M, Siekel P. Effect of thermal treatment on the amplification and quantification of transgenic and non-transgenic soybean and maize DNA. Food Anal Methods. 2010;3(3):211–8.
-
(2010)
Food Anal Methods
, vol.3
, Issue.3
, pp. 211-218
-
-
Bergerová, E.1
Hrnčírová, Z.2
Stankovská, M.3
Lopašovská, M.4
Siekel, P.5
-
55
-
-
70349316535
-
DNA barcoding of commercially important salmon and trout species (Oncorhynchus and Salmo) from North America
-
COI: 1:CAS:528:DC%2BD1MXhtVens7zO
-
Rasmussen RS, Morrissey MT, Hebert PD. DNA barcoding of commercially important salmon and trout species (Oncorhynchus and Salmo) from North America. J Agric Food Chem. 2009;57(18):8379–85.
-
(2009)
J Agric Food Chem
, vol.57
, Issue.18
, pp. 8379-8385
-
-
Rasmussen, R.S.1
Morrissey, M.T.2
Hebert, P.D.3
-
56
-
-
84898545912
-
A DNA mini-barcode for land plants
-
COI: 1:CAS:528:DC%2BC2cXmt1Sgt74%3D
-
Little DP. A DNA mini-barcode for land plants. Mol Ecol Resour. 2014;14(3):437–46.
-
(2014)
Mol Ecol Resour
, vol.14
, Issue.3
, pp. 437-446
-
-
Little, D.P.1
-
57
-
-
0037423543
-
deWaard JR. Biological identifications through DNA barcodes
-
COI: 1:CAS:528:DC%2BD3sXktVWiu7g%3D
-
Hebert PD, Cywinska A, Ball SL. deWaard JR. Biological identifications through DNA barcodes. Proc R S Lond B Biol Sci. 2003;270(1512):313–21.
-
(2003)
Proc R S Lond B Biol Sci
, vol.270
, Issue.1512
, pp. 313-321
-
-
Hebert, P.D.1
Cywinska, A.2
Ball, S.L.3
-
58
-
-
9744243588
-
Phylogenetic and phylogeographic relationships in the crayfish genus Austropotamobius inferred from mitochondrial COI gene sequences
-
COI: 1:CAS:528:DC%2BD2cXhtVaqsbzJ
-
Trontelj P, Machino Y, Sket B. Phylogenetic and phylogeographic relationships in the crayfish genus Austropotamobius inferred from mitochondrial COI gene sequences. Molec Phylogenet Evol. 2005;34(1):212–26.
-
(2005)
Molec Phylogenet Evol
, vol.34
, Issue.1
, pp. 212-226
-
-
Trontelj, P.1
Machino, Y.2
Sket, B.3
-
59
-
-
34447123273
-
Universal primer cocktails for fish DNA barcoding
-
COI: 1:CAS:528:DC%2BD2sXpslOhtbo%3D
-
Ivanova NV, Zemlak TS, Hanner RH, Hebert PD. Universal primer cocktails for fish DNA barcoding. Mol Ecol Notes. 2007;7(4):544–8.
-
(2007)
Mol Ecol Notes
, vol.7
, Issue.4
, pp. 544-548
-
-
Ivanova, N.V.1
Zemlak, T.S.2
Hanner, R.H.3
Hebert, P.D.4
-
60
-
-
0028528103
-
DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates
-
COI: 1:CAS:528:DyaK2MXjt12gtLs%3D
-
Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol Mar Biol Biotechnol. 1994;3(5):294–9.
-
(1994)
Mol Mar Biol Biotechnol
, vol.3
, Issue.5
, pp. 294-299
-
-
Folmer, O.1
Black, M.2
Hoeh, W.3
Lutz, R.4
Vrijenhoek, R.5
-
61
-
-
84859154796
-
First large-scale DNA barcoding assessment of reptiles in the biodiversity hotspot of Madagascar, based on newly designed COI primers
-
COI: 1:CAS:528:DC%2BC38Xlsleht7s%3D
-
Nagy ZT, Sonet G, Glaw F, Vences M. First large-scale DNA barcoding assessment of reptiles in the biodiversity hotspot of Madagascar, based on newly designed COI primers. PLoS One. 2012;7(3), e34506.
-
(2012)
PLoS One
, vol.7
, Issue.3
-
-
Nagy, Z.T.1
Sonet, G.2
Glaw, F.3
Vences, M.4
-
62
-
-
6944255373
-
Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator
-
COI: 1:CAS:528:DC%2BD2cXovVyju7g%3D
-
Hebert PD, Penton EH, Burns JM, Janzen DH, Hallwachs W. Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator. Proc Natl Acad Sci U S A. 2004;101(41):14812–7.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, Issue.41
, pp. 14812-14817
-
-
Hebert, P.D.1
Penton, E.H.2
Burns, J.M.3
Janzen, D.H.4
Hallwachs, W.5
-
63
-
-
32244434954
-
DNA barcodes distinguish species of tropical Lepidoptera
-
Hajibabaei M, Janzen DH, Burns JM, Hallwachs W, Hebert PD. DNA barcodes distinguish species of tropical Lepidoptera. Proc Natl Acad Sci U S A. 2006;103(4):968–71.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, Issue.4
, pp. 968-971
-
-
Hajibabaei, M.1
Janzen, D.H.2
Burns, J.M.3
Hallwachs, W.4
Hebert, P.D.5
-
64
-
-
32244439604
-
DNA barcoding Australia's fish species
-
COI: 1:CAS:528:DC%2BD2MXhtlSjsrjK
-
Ward RD, Zemlak TS, Innes BH, Last PR, Hebert PD. DNA barcoding Australia's fish species. Philos Trans R S B Biol Sci. 2005;360(1462):1847–57.
-
(2005)
Philos Trans R S B Biol Sci
, vol.360
, Issue.1462
, pp. 1847-1857
-
-
Ward, R.D.1
Zemlak, T.S.2
Innes, B.H.3
Last, P.R.4
Hebert, P.D.5
-
65
-
-
77957719337
-
Design of phylum-specific hybrid primers for DNA barcoding: addressing the need for efficient COI amplification in the Echinodermata
-
COI: 1:CAS:528:DC%2BC3cXhsVGmtrjJ
-
Hoareau TB, Boissin E. Design of phylum-specific hybrid primers for DNA barcoding: addressing the need for efficient COI amplification in the Echinodermata. Mol Ecol Resour. 2010;10(6):960–7.
-
(2010)
Mol Ecol Resour
, vol.10
, Issue.6
, pp. 960-967
-
-
Hoareau, T.B.1
Boissin, E.2
-
66
-
-
84878895638
-
A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents
-
Leray M, Yang JY, Meyer CP, Mills SC, Agudelo N, Ranwez V, et al. A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents. Front Zool. 2013;10(1):34.
-
(2013)
Front Zool
, vol.10
, Issue.1
, pp. 34
-
-
Leray, M.1
Yang, J.Y.2
Meyer, C.P.3
Mills, S.C.4
Agudelo, N.5
Ranwez, V.6
-
67
-
-
84881610261
-
Redesign of PCR primers for mitochondrial cytochrome c oxidase subunit I for marine invertebrates and application in all-taxa biotic surveys
-
COI: 1:CAS:528:DC%2BC3sXht1OqtrnO
-
Geller J, Meyer C, Parker M, Hawk H. Redesign of PCR primers for mitochondrial cytochrome c oxidase subunit I for marine invertebrates and application in all-taxa biotic surveys. Mol Ecol Resour. 2013;13(5):851–61.
-
(2013)
Mol Ecol Resour
, vol.13
, Issue.5
, pp. 851-861
-
-
Geller, J.1
Meyer, C.2
Parker, M.3
Hawk, H.4
-
68
-
-
0025764044
-
Evolution of the cytochrome b gene of mammals
-
COI: 1:CAS:528:DyaK3MXksVejtLk%3D
-
Irwin DM, Kocher TD, Wilson AC. Evolution of the cytochrome b gene of mammals. J Mol Evol. 1991;32(2):128–44.
-
(1991)
J Mol Evol
, vol.32
, Issue.2
, pp. 128-144
-
-
Irwin, D.M.1
Kocher, T.D.2
Wilson, A.C.3
-
69
-
-
34548236266
-
Primers and polymerase chain reaction conditions for DNA barcoding teleost fish based on the mitochondrial cytochrome b and nuclear rhodopsin genes
-
COI: 1:CAS:528:DC%2BD2sXht1ertL3M
-
Sevilla RG, Diez A, Norén M, Mouchel O, Jérôme M, Verrez-bagnis V, et al. Primers and polymerase chain reaction conditions for DNA barcoding teleost fish based on the mitochondrial cytochrome b and nuclear rhodopsin genes. Mol Ecol Notes. 2007;7(5):730–4.
-
(2007)
Mol Ecol Notes
, vol.7
, Issue.5
, pp. 730-734
-
-
Sevilla, R.G.1
Diez, A.2
Norén, M.3
Mouchel, O.4
Jérôme, M.5
Verrez-bagnis, V.6
-
70
-
-
0034484866
-
Species identification by means of the cytochrome b gene
-
COI: 1:STN:280:DC%2BD3M7ltlyquw%3D%3D
-
Parson W, Pegoraro K, Niederstätter H, Föger M, Steinlechner M. Species identification by means of the cytochrome b gene. Int J Legal Med. 2000;114(1–2):23–8.
-
(2000)
Int J Legal Med
, vol.114
, Issue.1-2
, pp. 23-28
-
-
Parson, W.1
Pegoraro, K.2
Niederstätter, H.3
Föger, M.4
Steinlechner, M.5
-
71
-
-
0024382879
-
Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers
-
COI: 1:CAS:528:DyaL1MXlvV2ksbw%3D
-
Kocher TD, Thomas WK, Meyer A, Edwards SV, Pääbo S, Villablanca FX, et al. Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers. Proc Natl Acad Sci U S A. 1989;86(16):6196–200.
-
(1989)
Proc Natl Acad Sci U S A
, vol.86
, Issue.16
, pp. 6196-6200
-
-
Kocher, T.D.1
Thomas, W.K.2
Meyer, A.3
Edwards, S.V.4
Pääbo, S.5
Villablanca, F.X.6
-
73
-
-
84897750175
-
A new set of 16S rRNA universal primers for identification of animal species
-
COI: 1:CAS:528:DC%2BC2cXnsFCmtbc%3D
-
Sarri C, Stamatis C, Sarafidou T, Galara I, Godosopoulos V, Kolovos M, et al. A new set of 16S rRNA universal primers for identification of animal species. Food Control. 2014;43:35–41.
-
(2014)
Food Control
, vol.43
, pp. 35-41
-
-
Sarri, C.1
Stamatis, C.2
Sarafidou, T.3
Galara, I.4
Godosopoulos, V.5
Kolovos, M.6
-
74
-
-
84919648788
-
-
Deagle BE, Jarman SN, Coissac E, Pompanon F, Taberlet P. DNA metabarcoding and the cytochrome c oxidase subunit I marker: not a perfect match.10(9)
-
Deagle BE, Jarman SN, Coissac E, Pompanon F, Taberlet P. DNA metabarcoding and the cytochrome c oxidase subunit I marker: not a perfect match. Biol Lett. 2014;10(9).
-
(2014)
Biol Lett.
-
-
-
75
-
-
34548130765
-
Two universal primer sets for species identification among vertebrates
-
Kitano T, Umetsu K, Tian W, Osawa M. Two universal primer sets for species identification among vertebrates. Int J Legal Med. 2007;121(5):423–7.
-
(2007)
Int J Legal Med
, vol.121
, Issue.5
, pp. 423-427
-
-
Kitano, T.1
Umetsu, K.2
Tian, W.3
Osawa, M.4
-
76
-
-
84871094711
-
Universal primers for species authentication of animal foodstuff in a single polymerase chain reaction
-
COI: 1:CAS:528:DC%2BC38XptFCkt7k%3D
-
Horreo JL, Ardura A, Pola IG, Martinez JL, Garcia-Vazquez E. Universal primers for species authentication of animal foodstuff in a single polymerase chain reaction. J Sci Food Agric. 2013;93(2):354–61.
-
(2013)
J Sci Food Agric
, vol.93
, Issue.2
, pp. 354-361
-
-
Horreo, J.L.1
Ardura, A.2
Pola, I.G.3
Martinez, J.L.4
Garcia-Vazquez, E.5
-
77
-
-
82255164364
-
ecoPrimers: inference of new DNA barcode markers from whole genome sequence analysis
-
COI: 1:CAS:528:DC%2BC3MXhsFCisbjF
-
Riaz T, Shehzad W, Viari A, Pompanon F, Taberlet P, Coissac E. ecoPrimers: inference of new DNA barcode markers from whole genome sequence analysis. Nucleic Acids Res. 2011;39(21):e145.
-
(2011)
Nucleic Acids Res
, vol.39
, Issue.21
, pp. e145
-
-
Riaz, T.1
Shehzad, W.2
Viari, A.3
Pompanon, F.4
Taberlet, P.5
Coissac, E.6
-
78
-
-
22744449938
-
Identifying spiders through DNA barcodes
-
COI: 1:CAS:528:DC%2BD2MXmsFylsrk%3D
-
Barrett RD, Hebert PD. Identifying spiders through DNA barcodes. Can J Zool. 2005;83(3):481–91.
-
(2005)
Can J Zool
, vol.83
, Issue.3
, pp. 481-491
-
-
Barrett, R.D.1
Hebert, P.D.2
-
79
-
-
0036897723
-
Slow mitochondrial DNA sequence evolution in the Anthozoa (Cnidaria)
-
COI: 1:CAS:528:DC%2BD38Xpsl2ms7g%3D
-
Shearer T, Van Oppen M, Romano S, Wörheide G. Slow mitochondrial DNA sequence evolution in the Anthozoa (Cnidaria). Mol Ecol. 2002;11(12):2475–87.
-
(2002)
Mol Ecol
, vol.11
, Issue.12
, pp. 2475-2487
-
-
Shearer, T.1
Van Oppen, M.2
Romano, S.3
Wörheide, G.4
-
80
-
-
29144473686
-
DNA barcoding: error rates based on comprehensive sampling
-
Meyer CP, Paulay G. DNA barcoding: error rates based on comprehensive sampling. PLoS Biol. 2005;3(12), e422.
-
(2005)
PLoS Biol
, vol.3
, Issue.12
-
-
Meyer, C.P.1
Paulay, G.2
-
81
-
-
33344477602
-
Low variation in partial cytochrome oxidase subunit I (COI) mitochondrial sequences in the coralline demosponge Astrosclera willeyana across the Indo-Pacific
-
Wörheide G. Low variation in partial cytochrome oxidase subunit I (COI) mitochondrial sequences in the coralline demosponge Astrosclera willeyana across the Indo-Pacific. Mar Biol. 2006;148(5):907–12.
-
(2006)
Mar Biol
, vol.148
, Issue.5
, pp. 907-912
-
-
Wörheide, G.1
-
82
-
-
40949140505
-
Slow mitochondrial COI sequence evolution at the base of the metazoan tree and its implications for DNA barcoding
-
COI: 1:CAS:528:DC%2BD1cXjsVGjsrs%3D
-
Huang D, Meier R, Todd PA, Chou LM. Slow mitochondrial COI sequence evolution at the base of the metazoan tree and its implications for DNA barcoding. J Mol Evol. 2008;66(2):167–74.
-
(2008)
J Mol Evol
, vol.66
, Issue.2
, pp. 167-174
-
-
Huang, D.1
Meier, R.2
Todd, P.A.3
Chou, L.M.4
-
83
-
-
84876060080
-
Where is the game? Wild meat products authentication in South Africa: a case study
-
D’Amato ME, Alechine E, Cloete KW, Davison S, Corach D. Where is the game? Wild meat products authentication in South Africa: a case study. Investig Genet. 2013;4(1):6.
-
(2013)
Investig Genet
, vol.4
, Issue.1
, pp. 6
-
-
D’Amato, M.E.1
Alechine, E.2
Cloete, K.W.3
Davison, S.4
Corach, D.5
-
84
-
-
78751523528
-
DNA barcoding of 18 species of Bovidae
-
COI: 1:CAS:528:DC%2BC3MXpvV2qsQ%3D%3D
-
Cai Y, Zhang L, Shen F, Zhang W, Hou R, Yue B, et al. DNA barcoding of 18 species of Bovidae. Chin Sci Bull. 2011;56(2):164–8.
-
(2011)
Chin Sci Bull
, vol.56
, Issue.2
, pp. 164-168
-
-
Cai, Y.1
Zhang, L.2
Shen, F.3
Zhang, W.4
Hou, R.5
Yue, B.6
-
85
-
-
79954609498
-
Species identification of Tanzanian antelopes using DNA barcoding
-
Bitanyi S, Bjornstad G, Ernest EM, Nesje M, Kusiluka LJ, Keyyu JD, et al. Species identification of Tanzanian antelopes using DNA barcoding. Mol Ecol Resour. 2011;11(3):442–9.
-
(2011)
Mol Ecol Resour
, vol.11
, Issue.3
, pp. 442-449
-
-
Bitanyi, S.1
Bjornstad, G.2
Ernest, E.M.3
Nesje, M.4
Kusiluka, L.J.5
Keyyu, J.D.6
-
86
-
-
79251584049
-
Potential efficacy of mitochondrial genes for animal DNA barcoding: a case study using eutherian mammals
-
COI: 1:CAS:528:DC%2BC3MXhvFagt7k%3D
-
Luo A, Zhang A, Ho SY, Xu W, Zhang Y, Shi W, et al. Potential efficacy of mitochondrial genes for animal DNA barcoding: a case study using eutherian mammals. BMC Genomics. 2011;12:84.
-
(2011)
BMC Genomics
, vol.12
, pp. 84
-
-
Luo, A.1
Zhang, A.2
Ho, S.Y.3
Xu, W.4
Zhang, Y.5
Shi, W.6
-
87
-
-
79960825698
-
Pyrosequencing for mini-barcoding of fresh and old museum specimens
-
COI: 1:CAS:528:DC%2BC3MXhtVOju7vF
-
Shokralla S, Zhou X, Janzen DH, Hallwachs W, Landry JF, Jacobus LM, et al. Pyrosequencing for mini-barcoding of fresh and old museum specimens. PLoS One. 2011;6(7), e21252.
-
(2011)
PLoS One
, vol.6
, Issue.7
-
-
Shokralla, S.1
Zhou, X.2
Janzen, D.H.3
Hallwachs, W.4
Landry, J.F.5
Jacobus, L.M.6
-
88
-
-
34548679130
-
Identification of mammal species using species-specific DNA pyrosequencing
-
COI: 1:CAS:528:DC%2BD2sXhtVOisL3P
-
Karlsson AO, Holmlund G. Identification of mammal species using species-specific DNA pyrosequencing. Forensic Sci Int. 2007;173(1):16–20.
-
(2007)
Forensic Sci Int
, vol.173
, Issue.1
, pp. 16-20
-
-
Karlsson, A.O.1
Holmlund, G.2
-
89
-
-
84966340330
-
Testing the potential of a ribosomal 16S marker for DNA metabarcoding of insects
-
Elbrecht V, Taberlet P, Dejean T, Valentini A, Usseglio-polatera P, Beisel J-N, et al. Testing the potential of a ribosomal 16S marker for DNA metabarcoding of insects. Peer J Preprints. 2016;4:e1855v1.
-
(2016)
Peer J Preprints
, vol.4
, pp. e1855v1
-
-
Elbrecht, V.1
Taberlet, P.2
Dejean, T.3
Valentini, A.4
Usseglio-polatera, P.5
Beisel, J.-N.6
-
90
-
-
0024259002
-
Plant mitochondrial DNA evolved rapidly in structure, but slowly in sequence
-
COI: 1:CAS:528:DyaL1MXhvFejuw%3D%3D
-
Palmer JD, Herbon LA. Plant mitochondrial DNA evolved rapidly in structure, but slowly in sequence. J Mol Evol. 1988;28(1–2):87–97.
-
(1988)
J Mol Evol
, vol.28
, Issue.1-2
, pp. 87-97
-
-
Palmer, J.D.1
Herbon, L.A.2
-
91
-
-
0242573359
-
Family-level relationships of Onagraceae based on chloroplast rbcL and ndhF data
-
COI: 1:CAS:528:DC%2BD3sXht1Sks7w%3D
-
Levin RA, Wagner WL, Hoch PC, Nepokroeff M, Pires JC, Zimmer EA, et al. Family-level relationships of Onagraceae based on chloroplast rbcL and ndhF data. Am J Bot. 2003;90(1):107–15.
-
(2003)
Am J Bot
, vol.90
, Issue.1
, pp. 107-115
-
-
Levin, R.A.1
Wagner, W.L.2
Hoch, P.C.3
Nepokroeff, M.4
Pires, J.C.5
Zimmer, E.A.6
-
92
-
-
77951631088
-
A two-locus global DNA barcode for land plants: the coding rbcL gene complements the non-coding trnH-psbA spacer region
-
Kress WJ, Erickson DL. A two-locus global DNA barcode for land plants: the coding rbcL gene complements the non-coding trnH-psbA spacer region. PLoS One. 2007;2(6), e508.
-
(2007)
PLoS One
, vol.2
, Issue.6
-
-
Kress, W.J.1
Erickson, D.L.2
-
93
-
-
0036188663
-
Molecular phylogenetics of Caryophyllales based on nuclear 18S rDNA and plastid rbcL, atpB, and matK DNA sequences
-
Cuénoud P, Savolainen V, Chatrou LW, Powell M, Grayer RJ, Chase MW. Molecular phylogenetics of Caryophyllales based on nuclear 18S rDNA and plastid rbcL, atpB, and matK DNA sequences. Am J Bot. 2002;89(1):132–44.
-
(2002)
Am J Bot
, vol.89
, Issue.1
, pp. 132-144
-
-
Cuénoud, P.1
Savolainen, V.2
Chatrou, L.W.3
Powell, M.4
Grayer, R.J.5
Chase, M.W.6
-
94
-
-
50949125486
-
Multiple multilocus DNA barcodes from the plastid genome discriminate plant species equally well
-
Fazekas AJ, Burgess KS, Kesanakurti PR, Graham SW, Newmaster SG, Husband BC, et al. Multiple multilocus DNA barcodes from the plastid genome discriminate plant species equally well. PLoS One. 2008;3(7), e2802.
-
(2008)
PLoS One
, vol.3
, Issue.7
-
-
Fazekas, A.J.1
Burgess, K.S.2
Kesanakurti, P.R.3
Graham, S.W.4
Newmaster, S.G.5
Husband, B.C.6
-
95
-
-
77649108109
-
Validation of the ITS2 region as a novel DNA barcode for identifying medicinal plant species
-
Chen S, Yao H, Han J, Liu C, Song J, Shi L, et al. Validation of the ITS2 region as a novel DNA barcode for identifying medicinal plant species. PLoS One. 2010;5(1), e8613.
-
(2010)
PLoS One
, vol.5
, Issue.1
-
-
Chen, S.1
Yao, H.2
Han, J.3
Liu, C.4
Song, J.5
Shi, L.6
-
96
-
-
0000432452
-
Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
-
White TJ, Bruns T, Lee S, Taylor J. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. PCR Protocols: Guide Methods Appl. 1990;18:315–22.
-
(1990)
PCR Protocols: Guide Methods Appl
, vol.18
, pp. 315-322
-
-
White, T.J.1
Bruns, T.2
Lee, S.3
Taylor, J.4
-
97
-
-
0027952288
-
Phylogenetic analysis of Sorghum and related taxa using internal transcribed spacers of nuclear ribosomal DNA
-
COI: 1:CAS:528:DyaK2MXivFWkt7k%3D
-
Sun Y, Skinner D, Liang G, Hulbert S. Phylogenetic analysis of Sorghum and related taxa using internal transcribed spacers of nuclear ribosomal DNA. Theor Appl Genet. 1994;89(1):26–32.
-
(1994)
Theor Appl Genet
, vol.89
, Issue.1
, pp. 26-32
-
-
Sun, Y.1
Skinner, D.2
Liang, G.3
Hulbert, S.4
-
98
-
-
0031406079
-
Chloroplast DNA phylogeny, reticulate evolution, and biogeography of Paeonia (Paeoniaceae)
-
COI: 1:CAS:528:DyaK2sXlvFejuro%3D
-
Sang T, Crawford D, Stuessy T. Chloroplast DNA phylogeny, reticulate evolution, and biogeography of Paeonia (Paeoniaceae). Am J Bot. 1997;84(9):1120–36.
-
(1997)
Am J Bot
, vol.84
, Issue.9
, pp. 1120-1136
-
-
Sang, T.1
Crawford, D.2
Stuessy, T.3
-
99
-
-
0345393289
-
Paraphyly of Tarasa (Malvaceae) and diverse origins of the polyploid species
-
Tate JA, Simpson BB. Paraphyly of Tarasa (Malvaceae) and diverse origins of the polyploid species. System Bot. 2003;28(4):723–37.
-
(2003)
System Bot
, vol.28
, Issue.4
, pp. 723-737
-
-
Tate, J.A.1
Simpson, B.B.2
-
100
-
-
33847371187
-
Power and limitations of the chloroplast trnL (UAA) intron for plant DNA barcoding
-
Taberlet P, Coissac E, Pompanon F, Gielly L, Miquel C, Valentini A, et al. Power and limitations of the chloroplast trnL (UAA) intron for plant DNA barcoding. Nucleic Acids Res. 2007;35(3), e14.
-
(2007)
Nucleic Acids Res
, vol.35
, Issue.3
-
-
Taberlet, P.1
Coissac, E.2
Pompanon, F.3
Gielly, L.4
Miquel, C.5
Valentini, A.6
-
101
-
-
0026261665
-
Universal primers for amplification of three non-coding regions of chloroplast DNA
-
COI: 1:CAS:528:DyaK38Xhslel
-
Taberlet P, Gielly L, Pautou G, Bouvet J. Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Mol Biol. 1991;17(5):1105–9.
-
(1991)
Plant Mol Biol
, vol.17
, Issue.5
, pp. 1105-1109
-
-
Taberlet, P.1
Gielly, L.2
Pautou, G.3
Bouvet, J.4
-
102
-
-
84885337331
-
DNA barcoding detects contamination and substitution in North American herbal products
-
Newmaster SG, Grguric M, Shanmughanandhan D, Ramalingam S, Ragupathy S. DNA barcoding detects contamination and substitution in North American herbal products. BMC Med. 2013;11(1):222.
-
(2013)
BMC Med
, vol.11
, Issue.1
, pp. 222
-
-
Newmaster, S.G.1
Grguric, M.2
Shanmughanandhan, D.3
Ramalingam, S.4
Ragupathy, S.5
-
103
-
-
0030816127
-
The matK gene: sequence variation and application in plant systematics
-
COI: 1:CAS:528:DyaK2sXks1Krs74%3D
-
Hilu K, Liang H. The matK gene: sequence variation and application in plant systematics. Am J Bot. 1997;84(6):830–9.
-
(1997)
Am J Bot
, vol.84
, Issue.6
, pp. 830-839
-
-
Hilu, K.1
Liang, H.2
-
104
-
-
77952263515
-
SNP-based method for the genetic identification of ramin Gonystylus spp. timber and products: applied research meeting CITES enforcement needs
-
Ogden R, McGough HN, Cowan RS, Chua L, Groves M, McEwing R. SNP-based method for the genetic identification of ramin Gonystylus spp. timber and products: applied research meeting CITES enforcement needs. Endanger Species Res. 2009;9(3):255–61.
-
(2009)
Endanger Species Res
, vol.9
, Issue.3
, pp. 255-261
-
-
Ogden, R.1
McGough, H.N.2
Cowan, R.S.3
Chua, L.4
Groves, M.5
McEwing, R.6
-
105
-
-
20444366492
-
Use of DNA barcodes to identify flowering plants
-
COI: 1:CAS:528:DC%2BD2MXlsV2mtbY%3D
-
Kress WJ, Wurdack KJ, Zimmer EA, Weigt LA, Janzen DH. Use of DNA barcodes to identify flowering plants. Proc Natl Acad Sci U S A. 2005;102(23):8369–74.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, Issue.23
, pp. 8369-8374
-
-
Kress, W.J.1
Wurdack, K.J.2
Zimmer, E.A.3
Weigt, L.A.4
Janzen, D.H.5
-
106
-
-
69149084832
-
A DNA barcode for land plants
-
Group CPW, Hollingsworth PM, Forrest LL, Spouge JL, Hajibabaei M, Ratnasingham S, et al. A DNA barcode for land plants. Proc Natl Acad Sci U S A. 2009;106(31):12794–7.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, Issue.31
, pp. 12794-12797
-
-
Group, C.P.W.1
Hollingsworth, P.M.2
Forrest, L.L.3
Spouge, J.L.4
Hajibabaei, M.5
Ratnasingham, S.6
-
107
-
-
83755207349
-
Comparative analysis of a large dataset indicates that internal transcribed spacer (ITS) should be incorporated into the core barcode for seed plants
-
COI: 1:CAS:528:DC%2BC3MXhs1CntbzN
-
Li D-Z, Gao L-M, Li H-T, Wang H, Ge X-J, Liu J-Q, et al. Comparative analysis of a large dataset indicates that internal transcribed spacer (ITS) should be incorporated into the core barcode for seed plants. Proc Natl Acad Sci U S A. 2011;108(49):19641–6.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, Issue.49
, pp. 19641-19646
-
-
Li, D.-Z.1
Gao, L.-M.2
Li, H.-T.3
Wang, H.4
Ge, X.-J.5
Liu, J.-Q.6
-
108
-
-
34250767339
-
Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: the tortoise and the hare III
-
COI: 1:CAS:528:DC%2BD2sXktFOjsLg%3D
-
Shaw J, Lickey EB, Schilling EE, Small RL. Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: the tortoise and the hare III. Am J Bot. 2007;94(3):275–88.
-
(2007)
Am J Bot
, vol.94
, Issue.3
, pp. 275-288
-
-
Shaw, J.1
Lickey, E.B.2
Schilling, E.E.3
Small, R.L.4
-
109
-
-
70449369851
-
Identification of Amazonian trees with DNA barcodes
-
Gonzalez MA, Baraloto C, Engel J, Mori SA, Pétronelli P, Riéra B, et al. Identification of Amazonian trees with DNA barcodes. PLoS One. 2009;4(10), e7483.
-
(2009)
PLoS One
, vol.4
, Issue.10
-
-
Gonzalez, M.A.1
Baraloto, C.2
Engel, J.3
Mori, S.A.4
Pétronelli, P.5
Riéra, B.6
-
110
-
-
73249116618
-
Plant DNA barcodes and a community phylogeny of a tropical forest dynamics plot in Panama
-
COI: 1:CAS:528:DC%2BD1MXhsVKisr%2FN
-
Kress WJ, Erickson DL, Jones FA, Swenson NG, Perez R, Sanjur O, et al. Plant DNA barcodes and a community phylogeny of a tropical forest dynamics plot in Panama. Proc Natl Acad Sci U S A. 2009;106(44):18621–6.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, Issue.44
, pp. 18621-18626
-
-
Kress, W.J.1
Erickson, D.L.2
Jones, F.A.3
Swenson, N.G.4
Perez, R.5
Sanjur, O.6
-
111
-
-
63149094617
-
A stuttering start to plant DNA barcoding: microsatellites present a previously overlooked problem in non-coding plastid regions
-
Devey DS, Chase MW, Clarkson JJ. A stuttering start to plant DNA barcoding: microsatellites present a previously overlooked problem in non-coding plastid regions. Taxon. 2009;58(1):7–15.
-
(2009)
Taxon
, vol.58
, Issue.1
, pp. 7-15
-
-
Devey, D.S.1
Chase, M.W.2
Clarkson, J.J.3
-
112
-
-
0032540901
-
Molecular coproscopy: dung and diet of the extinct ground sloth Nothrotheriops shastensis
-
COI: 1:CAS:528:DyaK1cXkslansb8%3D
-
Poinar HN, Hofreiter M, Spaulding WG, Martin PS, Stankiewicz BA, Bland H, et al. Molecular coproscopy: dung and diet of the extinct ground sloth Nothrotheriops shastensis. Science. 1998;281(5375):402–6.
-
(1998)
Science
, vol.281
, Issue.5375
, pp. 402-406
-
-
Poinar, H.N.1
Hofreiter, M.2
Spaulding, W.G.3
Martin, P.S.4
Stankiewicz, B.A.5
Bland, H.6
-
113
-
-
84875499068
-
High resolution melting of trnL amplicons in fruit juices authentication
-
COI: 1:CAS:528:DC%2BC3sXmsFCis7g%3D
-
Faria M, Magalhães A, Nunes M, Oliveira M. High resolution melting of trnL amplicons in fruit juices authentication. Food Control. 2013;33(1):136–41.
-
(2013)
Food Control
, vol.33
, Issue.1
, pp. 136-141
-
-
Faria, M.1
Magalhães, A.2
Nunes, M.3
Oliveira, M.4
-
114
-
-
84894242220
-
DNA metabarcoding multiplexing and validation of data accuracy for diet assessment: application to omnivorous diet
-
De Barba M, Miquel C, Boyer F, Mercier C, Rioux D, Coissac E, et al. DNA metabarcoding multiplexing and validation of data accuracy for diet assessment: application to omnivorous diet. Mol Ecol Resour. 2014;14(2):306–23.
-
(2014)
Mol Ecol Resour
, vol.14
, Issue.2
, pp. 306-323
-
-
De Barba, M.1
Miquel, C.2
Boyer, F.3
Mercier, C.4
Rioux, D.5
Coissac, E.6
-
115
-
-
84865591846
-
A tale of three next generation sequencing platforms: comparison of Ion torrent, pacific biosciences and illumina MiSeq sequencers
-
COI: 1:CAS:528:DC%2BC38Xhslaju7zI
-
Quail M, Smith ME, Coupland P, Otto TD, Harris SR, Connor TR, et al. A tale of three next generation sequencing platforms: comparison of Ion torrent, pacific biosciences and illumina MiSeq sequencers. BMC Genomics. 2012;13(1):341.
-
(2012)
BMC Genomics
, vol.13
, Issue.1
, pp. 341
-
-
Quail, M.1
Smith, M.E.2
Coupland, P.3
Otto, T.D.4
Harris, S.R.5
Connor, T.R.6
-
116
-
-
72849144434
-
Sequencing technologies-the next generation
-
COI: 1:CAS:528:DC%2BD1MXhsFOht7fO
-
Metzker ML. Sequencing technologies-the next generation. Nat Rev Genet. 2010;11(1):31–46.
-
(2010)
Nat Rev Genet
, vol.11
, Issue.1
, pp. 31-46
-
-
Metzker, M.L.1
-
117
-
-
79954587407
-
Environmental barcoding: a next-generation sequencing approach for biomonitoring applications using river benthos
-
COI: 1:CAS:528:DC%2BC3MXltV2rt7c%3D
-
Hajibabaei M, Shokralla S, Zhou X, Singer GA, Baird DJ. Environmental barcoding: a next-generation sequencing approach for biomonitoring applications using river benthos. PLoS One. 2011;6(4), e17497.
-
(2011)
PLoS One
, vol.6
, Issue.4
-
-
Hajibabaei, M.1
Shokralla, S.2
Zhou, X.3
Singer, G.A.4
Baird, D.J.5
-
118
-
-
84881066986
-
Environmental monitoring using next generation sequencing: rapid identification of macroinvertebrate bioindicator species
-
Carew ME, Pettigrove VJ, Metzeling L, Hoffmann AA. Environmental monitoring using next generation sequencing: rapid identification of macroinvertebrate bioindicator species. Front Zool. 2013;10(1):45.
-
(2013)
Front Zool
, vol.10
, Issue.1
, pp. 45
-
-
Carew, M.E.1
Pettigrove, V.J.2
Metzeling, L.3
Hoffmann, A.A.4
-
119
-
-
84949657290
-
Combined DNA, toxicological and heavy metal analyses provides an auditing toolkit to improve pharmacovigilance of traditional Chinese medicine (TCM)
-
Coghlan ML, Maker G, Crighton E, Haile J, Murray DC, White NE, et al. Combined DNA, toxicological and heavy metal analyses provides an auditing toolkit to improve pharmacovigilance of traditional Chinese medicine (TCM). Sci Rep. 2015;5.
-
(2015)
Sci Rep
, pp. 5
-
-
Coghlan, M.L.1
Maker, G.2
Crighton, E.3
Haile, J.4
Murray, D.C.5
White, N.E.6
-
120
-
-
84928781277
-
A next generation semiconductor based sequencing approach for the identification of meat species in DNA mixtures
-
Bertolini F, Ghionda MC, D’Alessandro E, Geraci C, Chiofalo V, Fontanesi L. A next generation semiconductor based sequencing approach for the identification of meat species in DNA mixtures. PLoS One. 2015;10(4), e0121701.
-
(2015)
PLoS One
, vol.10
, Issue.4
-
-
Bertolini, F.1
Ghionda, M.C.2
D’Alessandro, E.3
Geraci, C.4
Chiofalo, V.5
Fontanesi, L.6
-
121
-
-
84860756398
-
Performance comparison of benchtop high-throughput sequencing platforms
-
COI: 1:CAS:528:DC%2BC38XlvVKltrc%3D
-
Loman NJ, Misra RV, Dallman TJ, Constantinidou C, Gharbia SE, Wain J, et al. Performance comparison of benchtop high-throughput sequencing platforms. Nat Biotechnol. 2012;30(5):434–9.
-
(2012)
Nat Biotechnol
, vol.30
, Issue.5
, pp. 434-439
-
-
Loman, N.J.1
Misra, R.V.2
Dallman, T.J.3
Constantinidou, C.4
Gharbia, S.E.5
Wain, J.6
-
122
-
-
84917709088
-
Performance comparison of Illumina and ion torrent next-generation sequencing platforms for 16S rRNA-based bacterial community profiling
-
Salipante SJ, Kawashima T, Rosenthal C, Hoogestraat DR, Cummings LA, Sengupta DJ, et al. Performance comparison of Illumina and ion torrent next-generation sequencing platforms for 16S rRNA-based bacterial community profiling. Appl Environ Microbiol. 2014;80(24):7583–91.
-
(2014)
Appl Environ Microbiol
, vol.80
, Issue.24
, pp. 7583-7591
-
-
Salipante, S.J.1
Kawashima, T.2
Rosenthal, C.3
Hoogestraat, D.R.4
Cummings, L.A.5
Sengupta, D.J.6
-
123
-
-
84863981120
-
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
-
COI: 1:CAS:528:DC%2BC38XhtVOjtL3N
-
Caporaso JG, Lauber CL, Walters WA, Berg-Lyons D, Huntley J, Fierer N, et al. Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms. ISME J. 2012;6(8):1621–4.
-
(2012)
ISME J
, vol.6
, Issue.8
, pp. 1621-1624
-
-
Caporaso, J.G.1
Lauber, C.L.2
Walters, W.A.3
Berg-Lyons, D.4
Huntley, J.5
Fierer, N.6
-
124
-
-
84884251320
-
Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq Illumina sequencing platform
-
COI: 1:CAS:528:DC%2BC3sXhtlSgu73L
-
Kozich JJ, Westcott SL, Baxter NT, Highlander SK, Schloss PD. Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq Illumina sequencing platform. Appl Environ Microbiol. 2013;79(17):5112–20.
-
(2013)
Appl Environ Microbiol
, vol.79
, Issue.17
, pp. 5112-5120
-
-
Kozich, J.J.1
Westcott, S.L.2
Baxter, N.T.3
Highlander, S.K.4
Schloss, P.D.5
-
125
-
-
40149103278
-
Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex
-
COI: 1:CAS:528:DC%2BD1cXisFOmtLg%3D
-
Hamady M, Walker JJ, Harris JK, Gold NJ, Knight R. Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex. Nat Methods. 2008;5(3):235–7.
-
(2008)
Nat Methods
, vol.5
, Issue.3
, pp. 235-237
-
-
Hamady, M.1
Walker, J.J.2
Harris, J.K.3
Gold, N.J.4
Knight, R.5
-
126
-
-
77955237447
-
Highly-multiplexed barcode sequencing: an efficient method for parallel analysis of pooled samples
-
Smith AM, Heisler LE, Onge RPS, Farias-Hesson E, Wallace IM, Bodeau J, et al. Highly-multiplexed barcode sequencing: an efficient method for parallel analysis of pooled samples. Nucleic Acids Res. 2010;38(13), e142.
-
(2010)
Nucleic Acids Res
, vol.38
, Issue.13
-
-
Smith, A.M.1
Heisler, L.E.2
Onge, R.P.S.3
Farias-Hesson, E.4
Wallace, I.M.5
Bodeau, J.6
-
127
-
-
84871979584
-
Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing
-
COI: 1:CAS:528:DC%2BC38XhslGkurfN
-
Bokulich NA, Subramanian S, Faith JJ, Gevers D, Gordon JI, Knight R, et al. Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing. Nat Methods. 2013;10(1):57–9.
-
(2013)
Nat Methods
, vol.10
, Issue.1
, pp. 57-59
-
-
Bokulich, N.A.1
Subramanian, S.2
Faith, J.J.3
Gevers, D.4
Gordon, J.I.5
Knight, R.6
-
128
-
-
84863507534
-
Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data
-
Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, et al. Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics. 2012;28(12):1647–9.
-
(2012)
Bioinformatics
, vol.28
, Issue.12
, pp. 1647-1649
-
-
Kearse, M.1
Moir, R.2
Wilson, A.3
Stones-Havas, S.4
Cheung, M.5
Sturrock, S.6
-
129
-
-
79952422304
-
Quality control and preprocessing of metagenomic datasets
-
COI: 1:CAS:528:DC%2BC3MXjt1Sksrg%3D
-
Schmieder R, Edwards R. Quality control and preprocessing of metagenomic datasets. Bioinformatics. 2011;27(6):863–4.
-
(2011)
Bioinformatics
, vol.27
, Issue.6
, pp. 863-864
-
-
Schmieder, R.1
Edwards, R.2
-
131
-
-
84870431038
-
CD-HIT: accelerated for clustering the next-generation sequencing data
-
COI: 1:CAS:528:DC%2BC38XhslKnsb%2FE
-
Fu L, Niu B, Zhu Z, Wu S, Li W. CD-HIT: accelerated for clustering the next-generation sequencing data. Bioinformatics. 2012;28(23):3150–2.
-
(2012)
Bioinformatics
, vol.28
, Issue.23
, pp. 3150-3152
-
-
Fu, L.1
Niu, B.2
Zhu, Z.3
Wu, S.4
Li, W.5
-
132
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
COI: 1:CAS:528:DyaK2sXlvFyhu7w%3D
-
Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997;25(17):3389–402.
-
(1997)
Nucleic Acids Res
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
-
133
-
-
84884904719
-
UPARSE: highly accurate OTU sequences from microbial amplicon reads
-
COI: 1:CAS:528:DC%2BC3sXht1ylsLzE
-
Edgar RC. UPARSE: highly accurate OTU sequences from microbial amplicon reads. Nat Methods. 2013;10(10):996–8.
-
(2013)
Nat Methods
, vol.10
, Issue.10
, pp. 996-998
-
-
Edgar, R.C.1
-
134
-
-
82755193243
-
Commercial teas highlight plant DNA barcode identification successes and obstacles
-
Stoeckle MY, Gamble CC, Kirpekar R, Young G, Ahmed S, Little DP.1(42)
-
Stoeckle MY, Gamble CC, Kirpekar R, Young G, Ahmed S, Little DP. Commercial teas highlight plant DNA barcode identification successes and obstacles. Sci Rep. 2011;1(42).
-
(2011)
Sci Rep.
-
-
-
135
-
-
84865593212
-
Extensive pyrosequencing reveals frequent intra-genomic variations of internal transcribed spacer regions of nuclear ribosomal DNA
-
COI: 1:CAS:528:DC%2BC38XhtlSlsbnO
-
Song J, Shi L, Li D, Sun Y, Niu Y, Chen Z, et al. Extensive pyrosequencing reveals frequent intra-genomic variations of internal transcribed spacer regions of nuclear ribosomal DNA. PLoS One. 2012;7(8), e43971.
-
(2012)
PLoS One
, vol.7
, Issue.8
-
-
Song, J.1
Shi, L.2
Li, D.3
Sun, Y.4
Niu, Y.5
Chen, Z.6
-
136
-
-
0023375195
-
The neighbor-joining method: a new method for reconstructing phylogenetic trees
-
COI: 1:STN:280:DyaL1c7ovFSjsA%3D%3D
-
Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol. 1987;4(4):406–25.
-
(1987)
Mol Biol Evol
, vol.4
, Issue.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
137
-
-
79955561412
-
jMOTU and taxonerator: turning DNA barcode sequences into annotated operational taxonomic units
-
COI: 1:CAS:528:DC%2BC3MXlsVamtLc%3D
-
Jones M, Ghoorah A, Blaxter M. jMOTU and taxonerator: turning DNA barcode sequences into annotated operational taxonomic units. PLoS One. 2011;6(4), e19259.
-
(2011)
PLoS One
, vol.6
, Issue.4
-
-
Jones, M.1
Ghoorah, A.2
Blaxter, M.3
-
138
-
-
79956216816
-
CLOTU: an online pipeline for processing and clustering of 454 amplicon reads into OTUs followed by taxonomic annotation
-
Kumar S, Carlsen T, Mevik B-H, Enger P, Blaalid R, Shalchian-Tabrizi K, et al. CLOTU: an online pipeline for processing and clustering of 454 amplicon reads into OTUs followed by taxonomic annotation. BMC Bioinformatics. 2011;12(1):182.
-
(2011)
BMC Bioinformatics
, vol.12
, Issue.1
, pp. 182
-
-
Kumar, S.1
Carlsen, T.2
Mevik, B.-H.3
Enger, P.4
Blaalid, R.5
Shalchian-Tabrizi, K.6
-
139
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
COI: 1:CAS:528:DC%2BC3cXksFalurg%3D
-
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, et al. QIIME allows analysis of high-throughput community sequencing data. Nat Methods. 2010;7(5):335–6.
-
(2010)
Nat Methods
, vol.7
, Issue.5
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
Costello, E.K.6
-
140
-
-
72949107142
-
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
COI: 1:CAS:528:DC%2BC3cXis1yltw%3D%3D
-
Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, et al. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol. 2009;75(23):7537–41.
-
(2009)
Appl Environ Microbiol
, vol.75
, Issue.23
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
Hollister, E.B.6
-
141
-
-
84866642478
-
Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring
-
Yu DW, Ji Y, Emerson BC, Wang X, Ye C, Yang C, et al. Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring. Methods Ecol Evol. 2012;3(4):613–23.
-
(2012)
Methods Ecol Evol
, vol.3
, Issue.4
, pp. 613-623
-
-
Yu, D.W.1
Ji, Y.2
Emerson, B.C.3
Wang, X.4
Ye, C.5
Yang, C.6
-
142
-
-
84879961088
-
A DNA-based registry for all animal species: The Barcode Index Number (BIN) System
-
COI: 1:CAS:528:DC%2BC3sXhtFOmt7%2FK
-
Ratnasingham S, Hebert PD. A DNA-based registry for all animal species: The Barcode Index Number (BIN) System. PLoS One. 2013;8(7), e66213.
-
(2013)
PLoS One
, vol.8
, Issue.7
-
-
Ratnasingham, S.1
Hebert, P.D.2
|