Universal primers for species authentication of animal foodstuff in a single polymerase chain reaction

Journal of the Science of Food and Agriculture

Volumn 93, Issue 2, 2013, Pages 354-361

  Horreo, Jose L ^a   Ardura, Alba ^a   Pola, Ivan G ^a   Martinez, Jose L ^a   Garcia Vazquez, Eva ^a  

^a UNIVERSITY OF OVIEDO   (Spain)

Author keywords

16s rDNA; Animal foodstuff; Species identification; Universal primers

Indexed keywords

PRIMER DNA; RNA 16S;

ANIMAL; ARTICLE; CHEMISTRY; FOOD CONTAMINATION; FOOD CONTROL; FOOD PACKAGING; FOOD PRESERVATION; FOOD QUALITY; GENETICS; INVERTEBRATE; MEAT; METABOLISM; METHODOLOGY; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLYMERASE CHAIN REACTION; SEA FOOD; SEQUENCE ALIGNMENT; SHELLFISH; SPECIES DIFFERENCE; STANDARD; VERTEBRATE;

ANIMALS; BASE SEQUENCE; DNA PRIMERS; FISH PRODUCTS; FOOD CONTAMINATION; FOOD INSPECTION; FOOD LABELING; FOOD QUALITY; FOOD, PRESERVED; INVERTEBRATES; MEAT; MEAT PRODUCTS; PHYLOGENY; POLYMERASE CHAIN REACTION; RNA, RIBOSOMAL, 16S; SEAFOOD; SEQUENCE ALIGNMENT; SHELLFISH; SPECIES SPECIFICITY; VERTEBRATES;

ANIMALIA; INVERTEBRATA; MOLLUSCA; VERTEBRATA;

EID: 84871094711     PISSN: 00225142     EISSN: 10970010     Source Type: Journal    
DOI: 10.1002/jsfa.5766     Document Type: Article

References (36)

1. Jacquet JL and Pauly D, Trade secrets: renaming and mislabeling of seafood. Mar Pol 32: 309-318 (2008).
2. Wong EHK and Hanner RH, DNA barcoding detects market substitution in North American seafood. Food Res Int 41: 828-837 (2008).
3. Filonzi L, Chiesa S, Vaghi M and Marzano FN, Molecular barcoding reveals mislabelling of commercial fish products in Italy. Food Res Int 43: 1383-1388 (2010).
4. Miller DD and Mariani S, Smoke, mirrors, and mislabeled cod: poor transparency in the European seafood industry. Front Ecol Environ 8: 517-521 (2010).
5. Sheth SS, Waserman S, Kagan R, Alizadehfar R, Primeau MN, Elliot S, et al, Role of food labels in accidental exposures in food-allergic individuals in Canada. Ann Allergy Asthma Immunol 104: 60-65 (2010).
6. Triantafyllidis A, Karaiskou N, Perez J, Martinez JL, Roca A, Lopez B, et al, Fish allergy risk derived from ambiguous vernacular fish names: forensic DNA-based detection in Greek markets. Food Res Int 43: 2214-2216 (2010).
7. Marko PB, Lee SC, Rice AM, Gramling JM, Fitzhenry TM, McAlister JS, et al, Fisheries: mislabelling of a depleted reef fish. Nature 430: 309-310 (2004).
8. Garcia-Vazquez E, Horreo JL, Campo D, Machado-Schiaffino G, Bista I, Triantafyllidis A, et al, Mislabelling of commercial North American hakes suggests underreported exploitation of Merluccius albidus. Trans Am Fish Soc 138: 790-796 (2009).
9. Primrose S, Woolfe M and Rollinson S, Food forensics: methods for determining the authenticity of foodstuffs. Trends Food Sci Technol 104: 60-65 (2010).
10. Woolfe M and Primrose S, Food forensics: using DNA technology to combat misdescription and fraud. Trends Biotechnol 22: 222-226 (2004).
11. Hebert P, Cywinska A, Ball S and deWaard J, Biological identification through DNA barcodes. Proc R Soc B 270: 313-321 (2003).
12. Rasmussen RS and Morrissey MT, DNA-based methods for the identification of commercial fish and seafood species. Compr Rev Food Sci Food Saf 7: 280-295 (2008).
13. Teletchea F, Molecular identification of fish species; reassessment and possible applications. Rev Fish Biol Fish 19: 265-293 (2009).
14. Teletchea F, Maudet C and Hänni C, Food and forensic molecular identification: update and challenges. Trends Biotechnol 23: 359-366 (2005).
15. Unseld M, Beyermann B, Brandt P and Hiesel R, Identification of the species origin of highly processed meat products by mitochondrial DNA sequences. PCR Meth Appl 4: 241-243 (1995).
16. Parker A and Kornfield I, An improved amplification and sequencing strategy for phylogenetic studies using the mitochondrial large subunit rRNA gene. Genome 39: 793-797 (1996).
17. Thompson JD, Higgins DG and Gibson TJ, CLUSTAL W: improving the sensitivity of progressive multiple sequence alignments through sequence weighting, position specific gap penalties and weight matrix choice. Nucl Acids Res 22: 4673-4680 (1994).
18. Hall TA, BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41: 95-98 (1999).
19. Estoup A, Largiader CR, Perrot E and Chourrout D, Rapid one-tube DNA extraction protocol for reliable PCR detection of fish polymorphic markers and transgenes. Mol Mar Biol Biotechnol 5: 295-298 (1996).
20. Tamura K, Dudley J, Nei M and Kumar S, MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24: 1596-1599 (2007).
21. Ward RD, Hanner R and Hebert PDN, The campaign to DNA barcode all fishes, FISH-BOL. J Fish Biol 74: 329-356 (2009).
22. Ivanova NV, Zemlak TS, Hanner RH and Hebert PDN, Universal primer cocktails for fish DNA barcoding. Mol Ecol Notes 7: 544-548 (2007).
23. Meusnier I, Singer GA, Landry JF, Hickey DA, Hebert PD and Hajibabaei M, A universal DNA mini-barcode for biodiversity analysis. BMC Genom 9: 214 (2008).
24. Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA, et al, Genome sequencing in microfabricated high-density picolitre reactors. Nature 437: 376-380 (2005).
25. Kochzius M, Nölte M, Weber H, Silkenbeumer N, Hjörleifsdottir S, Hreggvidsson GO, et al, DNA microarrays for identifying fishes. Mar Biotechnol 10: 207-217 (2008).
26. Machado-Schiaffino G, Martinez JL and Garcia-Vazquez E, Detection of mislabeling in hake seafood employing mtSNPs-based methodology with identification of eleven hake species of the genus Merluccius. J Agric Food Chem 56: 5091-5095 (2008).
27. Waugh J, DNA barcoding in animal species: progress, potential and pitfalls. Bioessays 29: 188-197 (2007).
28. Barlett SE and Davidson WS, FINS (Forensically Informative Nucleotide Sequencing): a procedure for identifiying the animal origin of biological specimens. Biotechniques 12: 408-411 (1992).
29. Vences M, Meike T, Van Der Meijden A, Chiari Y and Vieites DR, Comparative performance of the 16S rRNA gene in DNA barcoding of amphibians. Front Zool 2: 5 (2005).
30. Fajardo V, González I, López-Calleja I, Martín I, Rojas M, Hernández PE, et al, Identification of meats from red deer (Cervus elaphus), fallow deer (Dama dama), and roe deer (Capreolus capreolus) using polymerase chain reaction targeting specific sequences from the mitochondrial 12S rRNA gene. Meat Sci 76: 232-240 (2007).
31. Ardura A, Horreo JL, Hernandez E, Jardon A, Pola I, Martinez JL, et al, Forensic DNA analysis reveals use of high trophic level marine fish in commercial aquaculture fish meals. Fish Res 115-116: 115-120 (2012).
32. Hajibabaei M, Singer GAC, Hebert PDN and Hickey DA, DNA barcoding: how it completes taxonomy, molecular phylogenetics and population genetics. Trends Genet 23: 167-172 (2007).
33. Sotelo CG, Calo-Mata P, Chapela MJ, Perez-Martin RI, Rehbein H, Hold GL, et al, Identification of flatfish (Pleuronectiformes) species using DNA-based techniques. J Agric Food Chem 49: 4562-4569 (2001).
34. Calo-Mata P, Sotelo CG, Perez-Martin PI, Rehbein H, Hold GL, Russell VJ, et al, Identification of gadoid fish species using DNA-based techniques. Eur Food Res Technol 217: 259-264 (2003).
35. Chapela MJ, Sotelo CG and Perez-Martin RI, Molecular identification of cephalopod species by FINS and PCR-RFLP of a cytochrome b gene fragment. Eur Food Res Technol 217: 524-529 (2003).
36. Ardura A, Pola IG, Lind AR and Garcia-Vazquez E, DNA-based methods for species authentication of Amazonian commercial fish. Food Res Int 43: 2295-2302 (2010).