-
1
-
-
0033044421
-
Getting to the bottom of marine biodiversity: sedimentary habitats - ocean bottoms are the most widespread habitat on earth and support high biodiversity and key ecosystem services
-
Snelgrove PVR. Getting to the bottom of marine biodiversity: sedimentary habitats - ocean bottoms are the most widespread habitat on earth and support high biodiversity and key ecosystem services. Bioscience 1999, 49:129-138.
-
(1999)
Bioscience
, vol.49
, pp. 129-138
-
-
Snelgrove, P.V.R.1
-
3
-
-
33644750034
-
Advances in molecular ecology: tracking trophic links through predator-prey food-webs
-
Sheppard SK, Harwood JD. Advances in molecular ecology: tracking trophic links through predator-prey food-webs. Funct Ecol 2005, 19:751-762.
-
(2005)
Funct Ecol
, vol.19
, pp. 751-762
-
-
Sheppard, S.K.1
Harwood, J.D.2
-
4
-
-
29144517946
-
Reverse taxonomy: an approach towards determining the diversity of meiobenthic organisms based on ribosomal RNA signature sequences
-
Markmann M, Tautz D. Reverse taxonomy: an approach towards determining the diversity of meiobenthic organisms based on ribosomal RNA signature sequences. Philos Trans Royal Soc B-Biol Sci 2005, 360:1917-1924.
-
(2005)
Philos Trans Royal Soc B-Biol Sci
, vol.360
, pp. 1917-1924
-
-
Markmann, M.1
Tautz, D.2
-
5
-
-
84859598363
-
Towards next-generation biodiversity assessment using DNA metabarcoding
-
10.1111/j.1365-294X.2012.05470.x, 22486824
-
Taberlet P, Coissac E, Pompanon F, Brochmann C, Willerslev E. Towards next-generation biodiversity assessment using DNA metabarcoding. Mol Ecol 2012, 21:2045-2050. 10.1111/j.1365-294X.2012.05470.x, 22486824.
-
(2012)
Mol Ecol
, vol.21
, pp. 2045-2050
-
-
Taberlet, P.1
Coissac, E.2
Pompanon, F.3
Brochmann, C.4
Willerslev, E.5
-
6
-
-
77951929876
-
Ultrasequencing of the meiofaunal biosphere: practice, pitfalls and promises
-
Creer S, Fonseca VG, Porazinska DL, Giblin-Davis RM, Sung W, Power DM, Packer M, Carvalho GR, Blaxter ML, Lambshead PJD, Thomas WK. Ultrasequencing of the meiofaunal biosphere: practice, pitfalls and promises. Mol Ecol 2011, 19:4-20.
-
(2011)
Mol Ecol
, vol.19
, pp. 4-20
-
-
Creer, S.1
Fonseca, V.G.2
Porazinska, D.L.3
Giblin-Davis, R.M.4
Sung, W.5
Power, D.M.6
Packer, M.7
Carvalho, G.R.8
Blaxter, M.L.9
Lambshead, P.J.D.10
Thomas, W.K.11
-
7
-
-
84866642478
-
Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring
-
Yu DW, Ji Y, Emerson BC, Wang X, Ye C, Yang C, Ding Z. Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring. Methods Ecol Evol 2012, 3:613-623.
-
(2012)
Methods Ecol Evol
, vol.3
, pp. 613-623
-
-
Yu, D.W.1
Ji, Y.2
Emerson, B.C.3
Wang, X.4
Ye, C.5
Yang, C.6
Ding, Z.7
-
8
-
-
65449140394
-
Analysis of Australian fur seal diet by pyrosequencing prey DNA in faeces
-
10.1111/j.1365-294X.2009.04158.x, 19317847
-
Deagle BE, Kirkwood R, Jarman SN. Analysis of Australian fur seal diet by pyrosequencing prey DNA in faeces. Mol Ecol 2009, 18:2022-2038. 10.1111/j.1365-294X.2009.04158.x, 19317847.
-
(2009)
Mol Ecol
, vol.18
, pp. 2022-2038
-
-
Deagle, B.E.1
Kirkwood, R.2
Jarman, S.N.3
-
9
-
-
80053605834
-
DNA-based faecal dietary analysis: a comparison of qPCR and high throughput sequencing approaches
-
10.1371/journal.pone.0025776, 3188572, 21998697
-
Murray DC, Bunce M, Cannell BL, Oliver R, Houston J, White NE, Barrero RA, Bellgard MI, Haile J. DNA-based faecal dietary analysis: a comparison of qPCR and high throughput sequencing approaches. PLoS One 2011, 6:e25776. 10.1371/journal.pone.0025776, 3188572, 21998697.
-
(2011)
PLoS One
, vol.6
-
-
Murray, D.C.1
Bunce, M.2
Cannell, B.L.3
Oliver, R.4
Houston, J.5
White, N.E.6
Barrero, R.A.7
Bellgard, M.I.8
Haile, J.9
-
10
-
-
84857669365
-
Prey preference of snow leopard (Panthera uncia) in South Gobi, Mongolia
-
10.1371/journal.pone.0032104, 3290533, 22393381
-
Shehzad W, McCarthy TM, Pompanon F, Purevjav L, Coissac E, Riaz T, Taberlet P. Prey preference of snow leopard (Panthera uncia) in South Gobi, Mongolia. PloS One 2012, 7:e32104. 10.1371/journal.pone.0032104, 3290533, 22393381.
-
(2012)
PloS One
, vol.7
-
-
Shehzad, W.1
McCarthy, T.M.2
Pompanon, F.3
Purevjav, L.4
Coissac, E.5
Riaz, T.6
Taberlet, P.7
-
11
-
-
77956879874
-
Pyrosequencing faecal DNA to determine diet of little penguins: is what goes in what comes out?
-
Deagle BE, Chiaradia A, McInnes J, Jarman SN. Pyrosequencing faecal DNA to determine diet of little penguins: is what goes in what comes out?. Conserv Genet 2010, 11:2039-2048.
-
(2010)
Conserv Genet
, vol.11
, pp. 2039-2048
-
-
Deagle, B.E.1
Chiaradia, A.2
McInnes, J.3
Jarman, S.N.4
-
12
-
-
70349272591
-
Analysing diet of small herbivores: the efficiency of DNA barcoding coupled with high-throughput pyrosequencing for deciphering the composition of complex plant mixtures
-
Soininen EM, Valentini A, Coissac E, Miquel C, Gielly L, Brochmann C, Brysting AK, Sønstebø JH, Ims RA, Yoccoz NG, Taberlet P. Analysing diet of small herbivores: the efficiency of DNA barcoding coupled with high-throughput pyrosequencing for deciphering the composition of complex plant mixtures. Frontiers zool 2009, 6:16.
-
(2009)
Frontiers zool
, vol.6
, pp. 16
-
-
Soininen, E.M.1
Valentini, A.2
Coissac, E.3
Miquel, C.4
Gielly, L.5
Brochmann, C.6
Brysting, A.K.7
Sønstebø, J.H.8
Ims, R.A.9
Yoccoz, N.G.10
Taberlet, P.11
-
13
-
-
58949104467
-
New perspectives in diet analysis based on DNA barcoding and parallel pyrosequencing: the trnL approach
-
Valentini A, Miquel C, Nawaz MA, Bellemain E, Coissac E, Pompanon F, Gielly L, Cruaud C, Nascetti G, Wincker P, Swenson JE, Taberlet P. New perspectives in diet analysis based on DNA barcoding and parallel pyrosequencing: the trnL approach. Mol Ecol Resour 2009, 9:51-60.
-
(2009)
Mol Ecol Resour
, vol.9
, pp. 51-60
-
-
Valentini, A.1
Miquel, C.2
Nawaz, M.A.3
Bellemain, E.4
Coissac, E.5
Pompanon, F.6
Gielly, L.7
Cruaud, C.8
Nascetti, G.9
Wincker, P.10
Swenson, J.E.11
Taberlet, P.12
-
14
-
-
84859602598
-
Who is eating what: diet assessment using next generation sequencing
-
Pompanon F, Deagle BE, Symondson WOC, Brown DS, Jarman SN, Taberlet P. Who is eating what: diet assessment using next generation sequencing. Mol Ecol 2009, 21:1931-1950.
-
(2009)
Mol Ecol
, vol.21
, pp. 1931-1950
-
-
Pompanon, F.1
Deagle, B.E.2
Symondson, W.O.C.3
Brown, D.S.4
Jarman, S.N.5
Taberlet, P.6
-
15
-
-
65349091290
-
Effect of PCR amplicon size on assessments of clone library microbial diversity and community structure
-
10.1111/j.1462-2920.2008.01857.x, 2716130, 19220394
-
Huber JA, Morrison HG, Huse SM, Neal PR, Sogin ML, Mark Welch DB. Effect of PCR amplicon size on assessments of clone library microbial diversity and community structure. Environ Microbiol 2009, 11:1292-1302. 10.1111/j.1462-2920.2008.01857.x, 2716130, 19220394.
-
(2009)
Environ Microbiol
, vol.11
, pp. 1292-1302
-
-
Huber, J.A.1
Morrison, H.G.2
Huse, S.M.3
Neal, P.R.4
Sogin, M.L.5
Mark Welch, D.B.6
-
16
-
-
77951498638
-
Experimental factors affecting PCR-based estimates of microbial species richness and evenness
-
10.1038/ismej.2009.153, 20090784
-
Engelbrektson A, Kunin V, Wrighton KC, Zvenigorodsky N, Chen F, Ochman H, Hugenholtz P. Experimental factors affecting PCR-based estimates of microbial species richness and evenness. ISME J 2010, 4:642-647. 10.1038/ismej.2009.153, 20090784.
-
(2010)
ISME J
, vol.4
, pp. 642-647
-
-
Engelbrektson, A.1
Kunin, V.2
Wrighton, K.C.3
Zvenigorodsky, N.4
Chen, F.5
Ochman, H.6
Hugenholtz, P.7
-
17
-
-
44449171351
-
A universal DNA mini-barcode for biodiversity analysis
-
Meusnier I, Singer GAC, Landry JF, Hickey DA, Hebert PDN, Hajibabaei M. A universal DNA mini-barcode for biodiversity analysis. Bmc Genomics 2008, 9.
-
(2008)
Bmc Genomics
, vol.9
-
-
Meusnier, I.1
Singer, G.A.C.2
Landry, J.F.3
Hickey, D.A.4
Hebert, P.D.N.5
Hajibabaei, M.6
-
18
-
-
0036897767
-
A DNA-based method for identification of krill species and its application to analysing the diet of marine vertebrate predators
-
10.1046/j.1365-294X.2002.01641.x, 12453250
-
Jarman SN, Gales NJ, Tierney M, Gill PC, Elliott NG. A DNA-based method for identification of krill species and its application to analysing the diet of marine vertebrate predators. Mol Ecol 2002, 11:2679-2690. 10.1046/j.1365-294X.2002.01641.x, 12453250.
-
(2002)
Mol Ecol
, vol.11
, pp. 2679-2690
-
-
Jarman, S.N.1
Gales, N.J.2
Tierney, M.3
Gill, P.C.4
Elliott, N.G.5
-
19
-
-
33748682933
-
Quantification of damage in DNA recovery from highly degraded samples - a case study on DNA in faeces
-
Deagle BE, Eveson JP, Jarman SN. Quantification of damage in DNA recovery from highly degraded samples - a case study on DNA in faeces. Frontiers Zool 2006, 3.
-
(2006)
Frontiers Zool
, vol.3
-
-
Deagle, B.E.1
Eveson, J.P.2
Jarman, S.N.3
-
20
-
-
79959397022
-
Molecular diet analysis of two African free-tailed bats (Molossidae) using high throughput sequencing
-
10.1371/journal.pone.0021441, 3120876, 21731749
-
Bohmann K, Monadjem A, Noer CL, Rasmussen M, Zeale MRK, Clare E, Jones G, Willerslev E, Gilbert MTP. Molecular diet analysis of two African free-tailed bats (Molossidae) using high throughput sequencing. PLoS One 2011, 6:e21441. 10.1371/journal.pone.0021441, 3120876, 21731749.
-
(2011)
PLoS One
, vol.6
-
-
Bohmann, K.1
Monadjem, A.2
Noer, C.L.3
Rasmussen, M.4
Zeale, M.R.K.5
Clare, E.6
Jones, G.7
Willerslev, E.8
Gilbert, M.T.P.9
-
21
-
-
79953768954
-
Eating local: influences of habitat on the diet of little brown bats (Myotis lucifugus)
-
10.1111/j.1365-294X.2011.05040.x, 21366747
-
Clare EL, Barber BR, Sweeney BW, Hebert PDN, Fenton MB. Eating local: influences of habitat on the diet of little brown bats (Myotis lucifugus). Mol Ecol 2011, 20:1772-1780. 10.1111/j.1365-294X.2011.05040.x, 21366747.
-
(2011)
Mol Ecol
, vol.20
, pp. 1772-1780
-
-
Clare, E.L.1
Barber, B.R.2
Sweeney, B.W.3
Hebert, P.D.N.4
Fenton, M.B.5
-
22
-
-
84866641975
-
PCR Primers for metazoan nuclear 18S and 28S ribosomal DNA sequences
-
10.1371/journal.pone.0046180, 3458000, 23049971
-
Machida RJ, Knowlton N. PCR Primers for metazoan nuclear 18S and 28S ribosomal DNA sequences. PLoS One 2012, 7:e46180. 10.1371/journal.pone.0046180, 3458000, 23049971.
-
(2012)
PLoS One
, vol.7
-
-
Machida, R.J.1
Knowlton, N.2
-
23
-
-
84879422207
-
Second-generation environmental sequencing unmasks marine metazoan biodiversity
-
Fonseca VG, Carvalho GR, Sung W, Johnson HF, Power DM, Neill SP, Packer M, Blaxter ML, Lambshead PJD, Thomas WK, Creer S. Second-generation environmental sequencing unmasks marine metazoan biodiversity. Nat Commun 2011,
-
(2011)
Nat Commun
-
-
Fonseca, V.G.1
Carvalho, G.R.2
Sung, W.3
Johnson, H.F.4
Power, D.M.5
Neill, S.P.6
Packer, M.7
Blaxter, M.L.8
Lambshead, P.J.D.9
Thomas, W.K.10
Creer, S.11
-
24
-
-
0026300584
-
Ribosomal DNA - molecular evolution and phylogenetic inference
-
10.1086/417338, 1784710
-
Hillis D, Dixon M. Ribosomal DNA - molecular evolution and phylogenetic inference. Q Rev Biol 1991, 66:411-453. 10.1086/417338, 1784710.
-
(1991)
Q Rev Biol
, vol.66
, pp. 411-453
-
-
Hillis, D.1
Dixon, M.2
-
25
-
-
0037297734
-
A plea for DNA taxonomy
-
Tautz D, Arctander P, Minelli A, Thomas RH, Vogler AP. A plea for DNA taxonomy. Trends Ecol Evol 2003, 18:70-74.
-
(2003)
Trends Ecol Evol
, vol.18
, pp. 70-74
-
-
Tautz, D.1
Arctander, P.2
Minelli, A.3
Thomas, R.H.4
Vogler, A.P.5
-
26
-
-
78149448601
-
Exploring the use of Cytochrome Oxidase c Subunit 1 (COI) for DNA barcoding of free-living marine nematodes
-
10.1371/journal.pone.0013716, 2965665, 21060838
-
Derycke S, Vanaverbeke J, Rigaux A, Backeljau T, Moens T. Exploring the use of Cytochrome Oxidase c Subunit 1 (COI) for DNA barcoding of free-living marine nematodes. PLoS One 2010, 5:e13716. 10.1371/journal.pone.0013716, 2965665, 21060838.
-
(2010)
PLoS One
, vol.5
-
-
Derycke, S.1
Vanaverbeke, J.2
Rigaux, A.3
Backeljau, T.4
Moens, T.5
-
27
-
-
77956396642
-
Dissimilarity of species and forms of planktonic Neocalanus copepods using mitochondrial COI, 12S, Nuclear ITS, and 28S gene sequences
-
10.1371/journal.pone.0010278, 2860979, 20442767
-
Machida RJ, Tsuda A. Dissimilarity of species and forms of planktonic Neocalanus copepods using mitochondrial COI, 12S, Nuclear ITS, and 28S gene sequences. PLoS One 2010, 5:e10278. 10.1371/journal.pone.0010278, 2860979, 20442767.
-
(2010)
PLoS One
, vol.5
-
-
Machida, R.J.1
Tsuda, A.2
-
28
-
-
84859864632
-
PCR primers for metazoan mitochondrial 12S ribosomal DNA sequences
-
10.1371/journal.pone.0035887, 3334914, 22536450
-
Machida RJ, Kweskin M, Knowlton N. PCR primers for metazoan mitochondrial 12S ribosomal DNA sequences. PLoS One 2012, 7:e35887. 10.1371/journal.pone.0035887, 3334914, 22536450.
-
(2012)
PLoS One
, vol.7
-
-
Machida, R.J.1
Kweskin, M.2
Knowlton, N.3
-
29
-
-
0037423543
-
Biological identifications through DNA barcodes
-
Hebert PDN, Cywinska A, Ball SL, DeWaard JR. Biological identifications through DNA barcodes. Proc R Soc London Ser B 2003, 270:313-321.
-
(2003)
Proc R Soc London Ser B
, vol.270
, pp. 313-321
-
-
Hebert, P.D.N.1
Cywinska, A.2
Ball, S.L.3
DeWaard, J.R.4
-
30
-
-
0028528103
-
DNA primers for amplification of mitochondrial cytochrome C oxidase subunit I from diverse metazoan invertebrates
-
Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R. DNA primers for amplification of mitochondrial cytochrome C oxidase subunit I from diverse metazoan invertebrates. Mol Mar Biol Biotechnol 1994, 3:294-299.
-
(1994)
Mol Mar Biol Biotechnol
, vol.3
, pp. 294-299
-
-
Folmer, O.1
Black, M.2
Hoeh, W.3
Lutz, R.4
Vrijenhoek, R.5
-
31
-
-
0038268514
-
Molecular systematics of cowries (Gastropoda: Cypraeidae) and diversification patterns in the tropics
-
Meyer CP. Molecular systematics of cowries (Gastropoda: Cypraeidae) and diversification patterns in the tropics. Biol J Linn Soc 2003, 79:401-459.
-
(2003)
Biol J Linn Soc
, vol.79
, pp. 401-459
-
-
Meyer, C.P.1
-
32
-
-
77957719337
-
Design of phylum-specific hybrid primers for DNA barcoding: addressing the need for efficient COI amplification in the Echinodermata
-
Hoareau TB, Boissin E. Design of phylum-specific hybrid primers for DNA barcoding: addressing the need for efficient COI amplification in the Echinodermata. Mol ecol res 2010, 10:960-967.
-
(2010)
Mol ecol res
, vol.10
, pp. 960-967
-
-
Hoareau, T.B.1
Boissin, E.2
-
33
-
-
77954554269
-
An In silico approach for the evaluation of DNA barcodes
-
Ficetola GF, Coissac E, Zundel S, Riaz T, Shehzad W, Bessière J, Taberlet P, Pompanon F. An In silico approach for the evaluation of DNA barcodes. BMC Genomics 2010,
-
(2010)
BMC Genomics
-
-
Ficetola, G.F.1
Coissac, E.2
Zundel, S.3
Riaz, T.4
Shehzad, W.5
Bessière, J.6
Taberlet, P.7
Pompanon, F.8
-
34
-
-
84879421731
-
Redesign of PCR primers for mitochondrial Cytochrome c oxidase subunit I for marine invertebrates and application in all-taxa biotic surveys
-
In press
-
Geller JB, Meyer CP, Parker M, Hawk H. Redesign of PCR primers for mitochondrial Cytochrome c oxidase subunit I for marine invertebrates and application in all-taxa biotic surveys. Mol Ecol Res In press.
-
Mol Ecol Res
-
-
Geller, J.B.1
Meyer, C.P.2
Parker, M.3
Hawk, H.4
-
35
-
-
1942445302
-
Using fish stomachs as samplers of the benthos: integrating long-term and broad scales
-
Link JS. Using fish stomachs as samplers of the benthos: integrating long-term and broad scales. Mar Ecol Prog Ser 2004, 269:265-275.
-
(2004)
Mar Ecol Prog Ser
, vol.269
, pp. 265-275
-
-
Link, J.S.1
-
36
-
-
84861393798
-
Species of the ocean: improving our understanding of biodiversity and ecosystem functioning using fish as sampling tools
-
Cook A, Bundy A. Species of the ocean: improving our understanding of biodiversity and ecosystem functioning using fish as sampling tools. Mar Ecol Prog Ser 2012, 454:1-18.
-
(2012)
Mar Ecol Prog Ser
, vol.454
, pp. 1-18
-
-
Cook, A.1
Bundy, A.2
-
37
-
-
1942517869
-
Group-specific polymerase chain reaction for DNA-based analysis of species diversity and identity in dietary samples
-
10.1111/j.1365-294X.2004.02109.x, 15078466
-
Jarman SN, Deagle BE, Gales NJ. Group-specific polymerase chain reaction for DNA-based analysis of species diversity and identity in dietary samples. Mol Ecol 2004, 13:1313-1322. 10.1111/j.1365-294X.2004.02109.x, 15078466.
-
(2004)
Mol Ecol
, vol.13
, pp. 1313-1322
-
-
Jarman, S.N.1
Deagle, B.E.2
Gales, N.J.3
-
38
-
-
0002051540
-
BioEdit: a user friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
-
Hall TA. BioEdit: a user friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 1999, 41:95-98.
-
(1999)
Nucleic Acids Symposium Series
, vol.41
, pp. 95-98
-
-
Hall, T.A.1
-
41
-
-
49749128451
-
Blocking primers to enhance PCR amplification of rare sequences in mixed samples - a case study on prey DNA in Antarctic krill stomachs
-
Vestheim H, Jarman SN. Blocking primers to enhance PCR amplification of rare sequences in mixed samples - a case study on prey DNA in Antarctic krill stomachs. Frontiers Zool 2008, 5.
-
(2008)
Frontiers Zool
, vol.5
-
-
Vestheim, H.1
Jarman, S.N.2
-
42
-
-
83955165237
-
PCR enrichment techniques to identify the diet of predators
-
10.1111/j.1755-0998.2011.03091.x, 22145916
-
O'Rorke R, Lavery S, Jeffs A. PCR enrichment techniques to identify the diet of predators. Mol Ecol Resour 2012, 12:5-17. 10.1111/j.1755-0998.2011.03091.x, 22145916.
-
(2012)
Mol Ecol Resour
, vol.12
, pp. 5-17
-
-
O'Rorke, R.1
Lavery, S.2
Jeffs, A.3
-
43
-
-
84876003047
-
Effectiveness of annealing blocking primers versus restriction enzymes for characterization of generalist diets: unexpected prey revealed in the gut contents of two coral reef fish species
-
10.1371/journal.pone.0058076, 3620324, 23579925
-
Leray M, Agudelo N, Mills SC, Meyer CP. Effectiveness of annealing blocking primers versus restriction enzymes for characterization of generalist diets: unexpected prey revealed in the gut contents of two coral reef fish species. PLoS One 2013, 8(4):e58076. 10.1371/journal.pone.0058076, 3620324, 23579925.
-
(2013)
PLoS One
, vol.8
, Issue.4
-
-
Leray, M.1
Agudelo, N.2
Mills, S.C.3
Meyer, C.P.4
-
44
-
-
12044254346
-
Surveys of gene families using polymerase chain reaction - PCR selection and PCR drift
-
Wagner A, Blackstone N, Cartwright P, Dick M, Misof B, Snow P, Wagner GP, Bartels J, Murtha M, Pendleton J. Surveys of gene families using polymerase chain reaction - PCR selection and PCR drift. Syst Biol 1994, 43:250-261.
-
(1994)
Syst Biol
, vol.43
, pp. 250-261
-
-
Wagner, A.1
Blackstone, N.2
Cartwright, P.3
Dick, M.4
Misof, B.5
Snow, P.6
Wagner, G.P.7
Bartels, J.8
Murtha, M.9
Pendleton, J.10
-
45
-
-
72949107142
-
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
10.1128/AEM.01541-09, 2786419, 19801464
-
Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ, Sahl JW, Stres B, Thallinger GG, Van Horn DJ, Weber CF. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 2009, 75:7537-7541. 10.1128/AEM.01541-09, 2786419, 19801464.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
Hollister, E.B.6
Lesniewski, R.A.7
Oakley, B.B.8
Parks, D.H.9
Robinson, C.J.10
Sahl, J.W.11
Stres, B.12
Thallinger, G.G.13
Van Horn, D.J.14
Weber, C.F.15
-
46
-
-
79251565226
-
Removing noise from pyrosequenced amplicons
-
Quince C, Lanzen A, Davenport RJ, Turnbaugh PJ. Removing noise from pyrosequenced amplicons. BMC Bioinforma 2011, 12:38.
-
(2011)
BMC Bioinforma
, vol.12
, pp. 38
-
-
Quince, C.1
Lanzen, A.2
Davenport, R.J.3
Turnbaugh, P.J.4
-
47
-
-
80052824121
-
MACSE: Multiple Alignment of Coding SEquences accounting for frameshifts and stop codons
-
10.1371/journal.pone.0022594, 3174933, 21949676
-
Ranwez V, Harispe S, Delsuc F, Douzery EJP. MACSE: Multiple Alignment of Coding SEquences accounting for frameshifts and stop codons. PLoS One 2011, 6:e22594. 10.1371/journal.pone.0022594, 3174933, 21949676.
-
(2011)
PLoS One
, vol.6
-
-
Ranwez, V.1
Harispe, S.2
Delsuc, F.3
Douzery, E.J.P.4
-
48
-
-
80051688000
-
Field guide to next-generation DNA sequencers
-
10.1111/j.1755-0998.2011.03024.x, 21592312
-
Glenn TC. Field guide to next-generation DNA sequencers. Mol Ecol Resour 2011, 11:759-769. 10.1111/j.1755-0998.2011.03024.x, 21592312.
-
(2011)
Mol Ecol Resour
, vol.11
, pp. 759-769
-
-
Glenn, T.C.1
-
49
-
-
79961181125
-
UCHIME improves sensitivity and speed of chimera detection
-
10.1093/bioinformatics/btr381, 3150044, 21700674
-
Edgar RC, Haas BJ, Clemente JC, Quince C, Knight R. UCHIME improves sensitivity and speed of chimera detection. Bioinformatics 2011, 27:2194-2200. 10.1093/bioinformatics/btr381, 3150044, 21700674.
-
(2011)
Bioinformatics
, vol.27
, pp. 2194-2200
-
-
Edgar, R.C.1
Haas, B.J.2
Clemente, J.C.3
Quince, C.4
Knight, R.5
-
50
-
-
79952001955
-
Clustering 16S rRNA for OTU prediction: a method of unsupervised Bayesian clustering
-
10.1093/bioinformatics/btq725, 3042185, 21233169
-
Hao X, Jiang R, Chen T. Clustering 16S rRNA for OTU prediction: a method of unsupervised Bayesian clustering. Bioinformatics 2011, 27:611-618. 10.1093/bioinformatics/btq725, 3042185, 21233169.
-
(2011)
Bioinformatics
, vol.27
, pp. 611-618
-
-
Hao, X.1
Jiang, R.2
Chen, T.3
-
51
-
-
84859299512
-
Using DNA barcoding and standardized sampling to compare geographic and habitat differentiation of crustaceans: a Hawaiian islands example
-
Plaisance L, Brainard RE, Caley MJ, Knowlton N. Using DNA barcoding and standardized sampling to compare geographic and habitat differentiation of crustaceans: a Hawaiian islands example. Diversity 2011, 4:581-591.
-
(2011)
Diversity
, vol.4
, pp. 581-591
-
-
Plaisance, L.1
Brainard, R.E.2
Caley, M.J.3
Knowlton, N.4
-
52
-
-
70350556843
-
Reef-associated crustacean fauna: biodiversity estimates using semi-quantitative sampling and DNA barcoding
-
Plaisance L, Knowlton N, Paulay G, Meyer CP. Reef-associated crustacean fauna: biodiversity estimates using semi-quantitative sampling and DNA barcoding. Coral Reefs 2009, 28:977-986.
-
(2009)
Coral Reefs
, vol.28
, pp. 977-986
-
-
Plaisance, L.1
Knowlton, N.2
Paulay, G.3
Meyer, C.P.4
-
53
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Meyers EW, Lipman DJ. Basic local alignment search tool. J Mol Biol 1990, 215:403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Meyers, E.W.4
Lipman, D.J.5
-
54
-
-
53849133826
-
Statistical assignment of DNA sequences using bayesian phylogenetics
-
10.1080/10635150802422316, 18853361
-
Munch K, Boomsma W, Huelsenbeck JP, Willerslev E, Nielsen R. Statistical assignment of DNA sequences using bayesian phylogenetics. Syst Biol 2008, 57:750-757. 10.1080/10635150802422316, 18853361.
-
(2008)
Syst Biol
, vol.57
, pp. 750-757
-
-
Munch, K.1
Boomsma, W.2
Huelsenbeck, J.P.3
Willerslev, E.4
Nielsen, R.5
-
55
-
-
70349255569
-
-
Available at
-
Oksanen J, Kindt R, Legendre P, O'Hara B, Simpson GL, Solymos P, Stevens MHH, Wagner H. Vegan community ecology package 2009, Available at http://vegan.r-forge.r-project.org/.
-
(2009)
Vegan community ecology package
-
-
Oksanen, J.1
Kindt, R.2
Legendre, P.3
O'Hara, B.4
Simpson, G.L.5
Solymos, P.6
Stevens, M.H.H.7
Wagner, H.8
-
56
-
-
84860353239
-
Moorea BIOCODE barcode library as a tool for understanding predator-prey interactions: insights into the diet of common predatory coral reef fishes
-
Leray M, Boehm JT, Mills SC, Meyer CP. Moorea BIOCODE barcode library as a tool for understanding predator-prey interactions: insights into the diet of common predatory coral reef fishes. Coral reefs 2012, 31:383-388.
-
(2012)
Coral reefs
, vol.31
, pp. 383-388
-
-
Leray, M.1
Boehm, J.T.2
Mills, S.C.3
Meyer, C.P.4
-
57
-
-
70349422298
-
Barcoding bamboozled by bacteria: convergence to metazoan mitochondrial primer targets by marine microbes
-
10.1093/sysbio/syp033, 20525598
-
Siddall ME, Fontanella FM, Watson SC, Kvist S, Erseus C. Barcoding bamboozled by bacteria: convergence to metazoan mitochondrial primer targets by marine microbes. Syst Biol 2009, 58:445-451. 10.1093/sysbio/syp033, 20525598.
-
(2009)
Syst Biol
, vol.58
, pp. 445-451
-
-
Siddall, M.E.1
Fontanella, F.M.2
Watson, S.C.3
Kvist, S.4
Erseus, C.5
-
58
-
-
71249098117
-
Fonctionnement trophique d'un écosystème récifal en Polynésie française
-
Arias-Gonzalez J, Hertel O, Galzin R. Fonctionnement trophique d'un écosystème récifal en Polynésie française. Cybium 1998, 22:1-24.
-
(1998)
Cybium
, vol.22
, pp. 1-24
-
-
Arias-Gonzalez, J.1
Hertel, O.2
Galzin, R.3
-
59
-
-
10344227715
-
Spatial, ontogenetic, and temporal variation in the feeding habits of the squirrelfish Sargocentron microstoma on reefs in Moorea, French Polynesia
-
Arias-Gonzalez JE, Galzin R, Harmelin-Vivien M. Spatial, ontogenetic, and temporal variation in the feeding habits of the squirrelfish Sargocentron microstoma on reefs in Moorea, French Polynesia. Bull Mar Sci 2004, 75:473-480.
-
(2004)
Bull Mar Sci
, vol.75
, pp. 473-480
-
-
Arias-Gonzalez, J.E.1
Galzin, R.2
Harmelin-Vivien, M.3
-
60
-
-
27644548514
-
Diet composition of carnivorous fishes from coral reef lagoons of New Caledonia
-
Kulbicki M, Bozec Y-M, Labrosse P, Letourneur Y, Mou-Tham G, Wantiez L. Diet composition of carnivorous fishes from coral reef lagoons of New Caledonia. Aquatic Living Res 2005, 18:231-250.
-
(2005)
Aquatic Living Res
, vol.18
, pp. 231-250
-
-
Kulbicki, M.1
Bozec, Y.-M.2
Labrosse, P.3
Letourneur, Y.4
Mou-Tham, G.5
Wantiez, L.6
-
61
-
-
58549106807
-
Quantification of copepod gut content by differential length amplification quantitative PCR (dla-qPCR)
-
Troedsson C, Simonelli P, Nagele V, Nejstgaard JC, Frischer ME. Quantification of copepod gut content by differential length amplification quantitative PCR (dla-qPCR). Mar Biol 2009, 156:253-259.
-
(2009)
Mar Biol
, vol.156
, pp. 253-259
-
-
Troedsson, C.1
Simonelli, P.2
Nagele, V.3
Nejstgaard, J.C.4
Frischer, M.E.5
-
62
-
-
0037310350
-
The correlation between rDNA copy number and genome size in eukaryotes
-
10.1139/g02-103, 12669795
-
Prokopowich C, Gregory T, Crease T. The correlation between rDNA copy number and genome size in eukaryotes. Genome 2003, 46:48-50. 10.1139/g02-103, 12669795.
-
(2003)
Genome
, vol.46
, pp. 48-50
-
-
Prokopowich, C.1
Gregory, T.2
Crease, T.3
-
63
-
-
34247605387
-
Quantitative analysis of prey DNA in pinniped faeces: potential to estimate diet composition?
-
Deagle BE, Tollit DJ. Quantitative analysis of prey DNA in pinniped faeces: potential to estimate diet composition?. Conserv Genet 2007, 8:743-747.
-
(2007)
Conserv Genet
, vol.8
, pp. 743-747
-
-
Deagle, B.E.1
Tollit, D.J.2
-
64
-
-
84859850496
-
Acanthaster planci outbreak: decline in coral health, coral size structure modification and consequences for obligate decapod assemblages
-
10.1371/journal.pone.0035456, 3328453, 22530026
-
Leray M, Beraud M, Anker A, Chancerelle Y, Mills S. Acanthaster planci outbreak: decline in coral health, coral size structure modification and consequences for obligate decapod assemblages. PLoS One 2012, 7:e35456. 10.1371/journal.pone.0035456, 3328453, 22530026.
-
(2012)
PLoS One
, vol.7
-
-
Leray, M.1
Beraud, M.2
Anker, A.3
Chancerelle, Y.4
Mills, S.5
-
65
-
-
84867302510
-
Predator crown-of-thorns starfish (Acanthaster planci) outbreak, mass mortality of corals, and cascading effects on reef fish and benthic communities
-
10.1371/journal.pone.0047363, 3466260, 23056635
-
Kayal M, Vercelloni J, Lison De Loma T, Bosserelle P, Chancerelle Y, Geoffroy S, Stievenart C, Michonneau F, Penin L, Planes S, Adjeroud M. Predator crown-of-thorns starfish (Acanthaster planci) outbreak, mass mortality of corals, and cascading effects on reef fish and benthic communities. PLoS One 2012, 7:e47363. 10.1371/journal.pone.0047363, 3466260, 23056635.
-
(2012)
PLoS One
, vol.7
-
-
Kayal, M.1
Vercelloni, J.2
Lison De Loma, T.3
Bosserelle, P.4
Chancerelle, Y.5
Geoffroy, S.6
Stievenart, C.7
Michonneau, F.8
Penin, L.9
Planes, S.10
Adjeroud, M.11
-
66
-
-
0000184470
-
Fish predation and its impact on the invertebrates of coral reefs and adjacent sediments
-
New York: Academic Press, Sale P
-
Jones G, Ferrell D, Sale P. Fish predation and its impact on the invertebrates of coral reefs and adjacent sediments. The ecology of fishes on coral reefs 1991, 156-178. New York: Academic Press, Sale P.
-
(1991)
The ecology of fishes on coral reefs
, pp. 156-178
-
-
Jones, G.1
Ferrell, D.2
Sale, P.3
-
67
-
-
34548838852
-
Devil in the details: high-resolution dietary analysis contradicts a basic assumption of reef-fish diversity models
-
Longenecker K. Devil in the details: high-resolution dietary analysis contradicts a basic assumption of reef-fish diversity models. Copeia 2007, 3:543-555.
-
(2007)
Copeia
, vol.3
, pp. 543-555
-
-
Longenecker, K.1
-
68
-
-
0346664358
-
The ecology of individuals: incidence and implications of individual specialization
-
10.1086/343878, 12650459
-
Bolnick DI, Svanback R, Fordyce JA, Yang LH, Davis JM, Hulsey CD, Forister ML. The ecology of individuals: incidence and implications of individual specialization. Am Nat 2003, 161:1-28. 10.1086/343878, 12650459.
-
(2003)
Am Nat
, vol.161
, pp. 1-28
-
-
Bolnick, D.I.1
Svanback, R.2
Fordyce, J.A.3
Yang, L.H.4
Davis, J.M.5
Hulsey, C.D.6
Forister, M.L.7
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