Chloroplast DNA phylogeny, reticulate evolution, and biogeography of Paeonia (Paeoniaceae)

American Journal of Botany

Volumn 84, Issue 8, 1997, Pages 1120-1136

  Sang, Tao ^a,b   Crawford, Daniel J ^a   Stuessy, Tod F ^a,c  

^a OHIO STATE UNIVERSITY   (United States)

^b MICHIGAN STATE UNIVERSITY   (United States)

^c UNIVERSITY OF VIENNA   (Austria)

Author keywords

Biogeography; Chloroplast DNA; Hybridization; matK; Paeonia; psbA trnH spacer; Reticulate evolution; trnL trnF spacer

Indexed keywords

EID: 0031406079     PISSN: 00029122     EISSN: None     Source Type: Journal    
DOI: 10.2307/2446155     Document Type: Article

References (87)

1. ALBERT, V. A., A. BACKLUND, K. BREMER, M. W. CHASE, J. R. MANHART, B. D. MICHLER, AND K. NIXON. 1994. Functional constraints and rbcL evidence for land plant phylogeny. Annals of the Missouri Botanical Garden 81: 534-567.
2. ALDRICH, J., B. W. CRNHEEY, E. MERLIN, AND L. CHRISTOPHERSON. 1988. The role of insertions/deletions in the evolution of the intergenic region between psbA and trnH in the chloroplast genome. Current Genetics 14: 137-146.
3. ARNHEIM, N. 1983. Concerted evolution of multigene families. In M. Nei and R. K. Koehn [eds.], Evolution of gene and protein, 38-61. Sinauer, Sunderland, MA.
4. ARNOLD, M. L., AND S. A. HODGES. 1995. Are natural hybrids fit or unfit relative to their parents? Trends in Ecology and Evolution 10: 67-71.
5. AVISE, J. C. 1994. Molecular markers, natural history and evolution. Chapman and Hall, New York, NY.
6. BARBER, H. N. 1941. Evolution in the genus Paeonia. Nature 148: 227-228.
7. BOHLE, U.-R., H. HILGER, R. CERFF, AND W. F. MARTIN. 1994. Noncoding chloroplast DNA for plant molecular systematics at the infrageneric level. In B. Schierwater, B. Streit, G. P. Wagner, and R. DeSalle [eds.], Molecular ecology and evolution: approaches and applications, 391-403. Birkhauser Verlag, Basel.
8. CLEGG, M. T. 1990. Dating the monocot-dicot divergence. Trends in Ecology and Evolution 5: 1-2.
9. _, B. S. GAUT, G. H. LEARN, JR., AND B. R. MORTON. 1994. Rates and patterns of chloroplast DNA evolution. Proceedings of the National Academy of Sciences, USA 91: 6795-6801.
10. CORRIVEAU, J. L., AND A. W. COLEMAN. 1988. Rapid screening method to detect potential biparental inheritance of plastid DNA and results for over 200 angiosperm species. American Journal of Botany 75: 1443-1458.
11. CRAWFORD, D. J., N. S. LEE, AND T. F. STUESSY. 1992. Plant species disjunctions: perspectives from molecular data. Aliso 13: 395-409.
12. DOEBLEY, J. F. 1989. Molecular evidence for a missing wild relative of maize and the introgression of its chloroplast genome into Zea perennis. Evolution 43: 1555-1558.
13. DOYLE, J. J. 1992. Gene trees and species trees: molecular systematics as one-character taxonomy. Systematic Botany 17: 144-163.
14. _, J. I. DAVIS, R. J. SORENG, D. GARVIN, AND M. J. ANDERSON. 1992. Chloroplast DNA inversions and the origin of the grass family (Poaceae). Proceedings of the National Academy of Sciences, USA 89: 7722-7726.
15. _, AND J. L. DOYLE. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin 19: 11-15.
16. FANG, W. 1958. Notes on Chinese peonies. Acta Phytotaxonomica Sinica 7: 288-323.
17. FELSENSTEIN, J. 1985. Confidence limits on phylogenetics: an approach using the bootstrap. Evolution 39: 783-791.
18. _. 1994. PHYLIP: phylogenetic inference package, version 3.5c. University of Washington, Seattle, WA.
19. GAMBRILL, K. W. 1988. King of flowers, queen of herbs: the peony. Pacific Horticuture 49:26-32.
20. GAUT, B. S., S. V. MUSE, W. D. CLARK, AND M. T. CLEGG. 1992. Relative rates of nucleotide substitution at the rbcL locus of monocotyledonous plants. Journal of Molecular Evolution. 35: 292-303.
21. GIELLY, L., AND P. TABERLET. 1994. The use of chloroplast DNA to resolve plant phylogenies: noncoding versus rbcL sequences. Molecular Biology and Evolution 11: 769-777.
22. GOLENBERG, E. M., M. T. CLEGG, M. L. DURBIN, J. DOEBLEY, AND D. P. MA. 1993. Evolution of a noncoding region of the chloroplast genome. Molecular Phylogenetics and Evolution 2: 52-64.
23. GRANT, V. 1981. Plant speciation, 2d ed., 191-353. Columbia University Press, New York, NY.
24. HAM, R. C. H. J., H. 'T. HART, T. H. M. MES, AND J. M. SANDBRINK. 1994. Molecular evolution of noncoding regions of the chloroplast genome in the Crassulaceae and related species. Current Genetics 25: 558-566.
25. HARRIS, P. A., AND R. INGRAM. 1991. Chloroplast DNA and biosystematics: the effects of intraspecific diversity and plastid transmission. Taxon 40: 393-412.
26. HONG, D., Z. ZHANG, AND X. ZHU. 1988. Studies on the genus Paeonia (1) - report of karyotypes of some wild species in China. Acta Phytotaxonomica Sinica 26: 33-43.
27. HUDSON, R. R. 1992. Gene trees, species trees, and segregation of ancestral alleles. Genetics 131: 509-512.
28. JANSEN, R. K., AND J. D. PALMER. 1987. A chloroplast DNA inversion marks an ancient evolutionary split in the sunflower family (Asteraceae). Proceedings of the National Academy of Sciences, USA 84: 5818-5822.
29. JOHNSON, L. A., AND D. E. SOLTIS. 1994. matK. DNA sequences and phylogenetic reconstruction in Saxifragaceae sensu stricto. Systematic Botany 19: 143-156.
30. JUKES, T. H., AND C. R. CANTOR. 1969. Evolution of protein molecules. In H. N. Munro [ed.], Mammalian protein metabolism, 21-132. Academic Press, New York, NY.
31. KREITMAN, M. 1991. Detecting selection at the level of DNA. In R. K. Selander, A. G. Clark, and T. S. Whittam [eds.], Evolution at the molecular level, 204-221. Sinauer, Sunderland, MA.
32. LARSON, A. 1994. The comparison of morphological and molecular data in phylogenetic systematics. In B. Schierwater, B. Streit, G. P. Wagner, and R. DeSalle [eds.], Molecular ecology and evolution: approaches and applications, 371-390. Birkhauser Verlag, Basel.
33. LEVINSON, G., AND G. A. GUTMAN. 1987. Slipped-strand mispairing: a major mechanism for DNA sequence evolution. Molecular Biology and Evolution 4: 203-221.
34. LI, W.-H., M. TANIMURA, AND P. M. SHARP. 1987. An evaluation of the molecular clock hypothesis using mammalian DNA sequences. Journal of Molecular Evolution 25: 330-342.
35. MADDISON, W. P., M. J. DONOGHUE, AND D. R. MADDISON. 1984. Out-group analysis and parsimony. Systematic Zoology 33: 83-103.
36. MANER, J.-F., A. NATALI, AND F. EHRENDORFER. 1994. Phylogeny of Rubiaceae-Rubieae inferred from the sequence of a cpDNA intergene region. Plant Systematics and Evolution 190: 195-212.
37. MASON-GAMER, R., AND E. A. KELLOGG. In press. Testing for phylogenetic conflict among molecular data sets in the tribe triticeae (Gramineae). Systematic Biology.
38. MES, T. H. M., AND H. 'T. HART. 1994. Sedum surculosum and S. jaccardianum (Crassulaceae) share a unique 70 bp deletion in the chloroplast DNA trnL(UAA)-trnF(GAA) intergenic spacer. Plant Systematics and Evolution 193: 213-221.
39. MOGENSEN, H. L. 1996. The hows and whys of cytoplasmic inheritance in seed plants. American Journal of Botany 83: 383-404.
40. MOORE, W. S. 1995. Inferring phylogenies from mtDNA variation: mitochondrial-gene trees versus nuclear-gene trees. Evolution 49: 718-726.
41. MORTON, B. R., AND M. T. CLEGG. 1993. A chloroplast DNA mutational hot spot and gene conversion in a noncoding region near rbcL in the grass family (Poaceae). Current Genetics 24: 357-365.
42. NEUHAUS, H., AND G. LINK. 1987. The chloroplast trnAtys(UUU) gene from mustard (Sinapsis alba) contains a class II intron potentially coding for a maturase-related polypeptide. Current Genetics 11: 251-257.
43. NOONAN, G. R. 1988. Biogeography of North American and Mexican insects, and a critique of vicariance biogeography. Systematic Zoology 37: 366-384.
44. OLMSTEAD, R. G., AND J. D. PALMER. 1994. Chloroplast DNA systematics: a review of methods and data analysis. American Journal of Botany 81: 1205-1224.
45. PAMILO, P., AND M. NEI. 1988. Relationships between gene trees and species trees. Molecular Biology and Evolution 5: 568-583.
46. PAN, K.-Y. 1979. Paeonia. In Flora reipublicae siniccae, vol. 27, 37-59. Science Press, Beijing.
47. PARKS, C. R., AND J. F. WENDEL. 1990. Molecular divergence between Asian and North American species of Liriodendron (Magnoliaceae) with implications for interpretation of fossil floras. American Journal of Botany 77: 1243-1256.
48. PEI, Y.-L. 1993. Studies on the Paeonia suffruticosa Andr. Complex. Ph.D. dissertation. Institute of Botany, Chinese Academy of Sciences, Beijing.
49. POTTS, R., AND A. K. BEHRENSMEYER. 1992. Late Cenozoic Terrestrial ecosystems. In A. K. Behrensmeyer, J. D. Damuth, W. A. Dimichele, R. Potts, H.-D. Sues, and S. L. Wing [eds], Terrestrial ecosystems through time, 419-542, University of Chicago Press, Chicago, IL.
50. RAUBERSON, L. A., AND R. K. JANSEN. 1992. Chloroplast DNA evidence on the ancient evolutionary split in vascular land plants. Science 255: 1697-1699.
51. RIESEBERG, L. H. 1991. Homoploid reticulate evolution in Helianthus: evidence from ribosomal genes. American Journal of Botany 78: 1218-1237.
52. _, R. CARTER, AND S. ZONA. 1990. Molecular tests of the hypothesized hybrid origin of two diploid Helianthus species (Asteraceae). Evolution 44: 1498-1511.
53. _, AND D. E. SOLTIS. 1991. Phylogenetic consequences of cytoplasmic gene flow in plants. Evolutionary Trends in Plants 5: 65-84.
54. _, AND C. VAN FOSSEN, AND A. DESROCHERS. 1995. Genomic reorganization accompanies hybrid speciation in wild sunflowers. Nature 375: 313-316.
55. _, AND J. F. WENDEL. 1993. Introgression and its consequences in plants. In R. G. Harrison [ed.], Hybrid zone and the evolutionary process, 70-109. Oxford University Press, New York, NY.
56. SANG, T. 1995. Phylogeny and biogeography of Paeonia (Paeoniaceae). Ph.D. dissertation, Ohio State University, Columbus, OH.
57. SANG, T., D. J. CRAWFORD, AND T. F. STUESSY. 1995. Documentation of reticulate evolution in peonies (Paeonia) using sequences of internal transcribed spacer of nuclear ribosomal DNA: implications for biogeography and concerted evolution. Proceedings of the National Academy of Sciences, USA 92: 6813-6817.
58. _, D. J. CRAWFORD, T. F. STUESSY, AND M. O. SILVA. 1995. ITS sequences and the phylogeny of the genus Robinsonia (Asteraceae). Systematic Botany 20: 55-64.
59. SCHWARZACHER-ROBINSON, T. 1986. Meiosis, SC-formation, and karyotype structure in diploid Paeonia tenuifolia and tetraploid P. officinalis. Plant Systematics and Evolution 154: 259-274.
60. SHINOZAKI, K., ET AL. 1986. The complete nucleotide sequence of the tobacco chloroplast genome. Plant Molecular Biology Report 4: 110-147.
61. SOLTIS, D. E., AND R. K. KUZOFF. 1995. Discordance between nuclear and chloroplast phylogenies in the Heuchera group (Saxifragaceae). Evolution 49: 727-742.
62. STEBBINS, G. L., JR. 1938a. Notes on the systematic relationships of the Old World species and of some horticultural forms of the genus Paeonia. University of California Publications in Botany 19: 245-266.
63. _. 1938b. The western American species of Paeonia. Madroño 4: 252-260.
64. _. 1948. Review of "A study of the genus Paeonia by F. C. Stern." Madrono 9: 193-199.
65. _, AND S. ELLERTON. 1939. Structural hybridity in Paeonia californica and P. brownii. Journal of Genetics 38: 1-36.
66. STEELE, K. P., AND R. VILGALYS. 1994. Phylogenetic analyses of Polemoniaceae using nucleotide sequences of the plastid gene matK. Systematic Botany 19: 126-142.
67. STERN, F. C. 1946. A study of the genus Paeonia. Royal Horticultural Society, London.
68. STREISINGER, G., AND J. OWEN. 1985. Mechanisms of spontaneous and induced frameshift mutation in bacteriophage T4. Genetics 109: 633-659.
69. SUH, Y. L. B. THUEH, H. E. REEVE, AND E. A. ZIMMER. 1993. Molecular evolution and phylogenetic implication of internal transcribed spacer sequences of ribosomal DNA in Winteraceae. American Journal of Botany 80: 1042-1055.
70. SWOFFORD, D. L. 1993. PAUP: phylogenetic analysis using parsimony, version 3.1.1. Illinois Natural History Survey, Champaign, IL.
71. SYTSMA, K. J., AND J. F. SMITH. 1992. Molecular systematics of Onagraceae: examples from Clarkia and Fuchia. In P. S. Soltis, D. E. Soltis, and J. J. Doyle [eds], Molecular systematics of plants, 295-323. Chapman and Hall, New York, NY.
72. TABERLET, P., L. GIELLY, G. PAUTOU, AND J. BOUVET. 1991. Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Molecular Biology 17: 1105-1109.
73. TAKHTAJAN, A. 1969. Flowering plants, origin and dispersal. Oliver & Boyd, Edinburgh.
74. _. 1987. Systema Magnoliophytorum, 54-55. Officina Editoria "Nauka", Leninopoli.
75. TAO, J. 1992. The Tertiary vegetation and flora and floristic regions in China. Acta Phytotaxonomica Sinica 30: 25-43.
76. TEMPLETON, A. R. 1983. Phylogenetic inference from restriction endoclease cleavage site maps with particular reference to the evolution of humans and the apes. Evoution 37: 221-244.
77. THORNE, R. F. 1992. Classification and geography of the flowering plants. Botanical Review 58: 225-348.
78. TIFFNEY, B. H. 1985. Perspectives on the origin of the floristic similarity between eastern Asia and eastern North America. Journal of Arnold Arboretum 65: 73-94.
79. TZANOUDAKIS, D. 1983. Karyotypes of four wild Paeonia species from Greece. Nordic Journal of Botany 3: 307-318.
80. WATROUS, L. E., AND Q. D. WHEELER. 1981. The out-group comparison method of character analysis. Systematic Zoology 30: 1-11.
81. WENDEL, J. F., AND V. A. ALBERT. 1992. Phylogenetics of the cotton genus (Gossypium): character-state weighted parsimony analysis of chloroplast-DNA restriction site data and its systematic and biogeographic implications. Systematic Botany 17: 115-143.
82. _, A. SCHNABEL, AND T. SEELANAN. 1995. Bi-directional interlocus concerted evolution following allopolyploid speciation in cotton (Gossypium). Proceedings of the National Academy of Sciences. USA 92: 280-284.
83. WOLFE, A. D., AND W. J. ELISENS. 1994. Nuclear ribosomal DNA restriction-site variation in Penstemon section Peltanthera (Scrophulariaceae): an evaluation of diploid hybrid speciation and evidence for introgression. American Journal of Botany 81: 1627-1635.
84. _, AND _. 1995. Evidence of chloroplast capture and pollen-mediated gene flow in Penstemon section Peltanthera (Scrophulariaceae). Systematic Botany 20: 395-412.
85. WOLFE, J. A. 1975. Some aspects of plant geography of the Northern Hemisphere during the late Cretaceous and Tertiary. Annals of the Missouri Botanical Garden 62: 264-279.
86. _. 1980. Tertiary climatic and floristic relationships at high latitudes in the Northern Hemisphere. Paleogeography, Plaeoclmatics, and Paleoecology 61: 33-77.
87. WOLFSON, R., K. G. HIGGINS, AND B. B. SEARS. 1991. Evidence for replication slippage in the evolution of Oenothera chloroplast DNA. Molecular Biology and Evolution 8: 709-720.