-
1
-
-
84859623044
-
Meta-barcoding of "dirt" DNA from soil reflects vertebrate biodiversity
-
Andersen K, Bird KL, Rasmussen M, et al. (2012) Meta-barcoding of "dirt" DNA from soil reflects vertebrate biodiversity. Molecular Ecology, 21, 1966-1979.
-
(2012)
Molecular Ecology
, vol.21
, pp. 1966-1979
-
-
Andersen, K.1
Bird, K.L.2
Rasmussen, M.3
-
2
-
-
84859562300
-
Biomonitoring 2.0: A new paradigm in ecosystem assessment made possible by next-generation DNA sequencing
-
Baird D, Hajibabaei M, (2012) Biomonitoring 2.0: a new paradigm in ecosystem assessment made possible by next-generation DNA sequencing. Molecular Ecology, 21, 2039-2044.
-
(2012)
Molecular Ecology
, vol.21
, pp. 2039-2044
-
-
Baird, D.1
Hajibabaei, M.2
-
3
-
-
84859614217
-
Exploration of community traits as ecological markers in microbial metagenomes
-
Barberán A, Fernández-Guerra A, Bohannan BJM, Casamayor EO, (2012) Exploration of community traits as ecological markers in microbial metagenomes. Molecular Ecology, 21, 1909-1917.
-
(2012)
Molecular Ecology
, vol.21
, pp. 1909-1917
-
-
Barberán, A.1
Fernández-Guerra, A.2
Bohannan, B.J.M.3
Casamayor, E.O.4
-
4
-
-
33748755966
-
Molecular detection of marine nematodes from environmental samples: Overcoming eukaryotic interference
-
Bhadury P, Austen MC, Bilton DT, et al. (2006) Molecular detection of marine nematodes from environmental samples: overcoming eukaryotic interference. Aquatic Microbial Ecology, 44, 97-103.
-
(2006)
Aquatic Microbial Ecology
, vol.44
, pp. 97-103
-
-
Bhadury, P.1
Austen, M.C.2
Bilton, D.T.3
-
5
-
-
84859576447
-
Tracking earthworm communities from soil DNA
-
Bienert R, de Danieli S, Miquel C, et al. (2012) Tracking earthworm communities from soil DNA. Molecular Ecology, 21, 2017-2030.
-
(2012)
Molecular Ecology
, vol.21
, pp. 2017-2030
-
-
Bienert, R.1
De Danieli, S.2
Miquel, C.3
-
6
-
-
84859574463
-
Changes in the root-associated fungal communities along a primary succession gradient analysed by 454 pyrosequencing
-
Blaalid R, Carlsen T, Kumar S, et al. (2012) Changes in the root-associated fungal communities along a primary succession gradient analysed by 454 pyrosequencing. Molecular Ecology, 21, 1897-1908.
-
(2012)
Molecular Ecology
, vol.21
, pp. 1897-1908
-
-
Blaalid, R.1
Carlsen, T.2
Kumar, S.3
-
7
-
-
84859583189
-
Blocking human contaminant DNA during PCR allows amplification of rare mammal species from sedimentary ancient DNA
-
Boessenkool S, Epp L, Haile J, et al. (2012) Blocking human contaminant DNA during PCR allows amplification of rare mammal species from sedimentary ancient DNA. Molecular Ecology, 21, 1806-1815.
-
(2012)
Molecular Ecology
, vol.21
, pp. 1806-1815
-
-
Boessenkool, S.1
Epp, L.2
Haile, J.3
-
9
-
-
77953353038
-
Ecological assessment of estuarine sediments by pyrosequencing eukaryotic ribosomal DNA
-
Chariton AA, Court LN, Hartley DM, Colloff MJ, Hardy CM, (2010) Ecological assessment of estuarine sediments by pyrosequencing eukaryotic ribosomal DNA. Frontiers in Ecology and the Environment, 8, 233-238.
-
(2010)
Frontiers in Ecology and the Environment
, vol.8
, pp. 233-238
-
-
Chariton, A.A.1
Court, L.N.2
Hartley, D.M.3
Colloff, M.J.4
Hardy, C.M.5
-
10
-
-
84859574767
-
Bioinformatic challenges for DNA metabarcoding of plants and animals
-
Coissac E, Riaz T, Puillandre N, (2012) Bioinformatic challenges for DNA metabarcoding of plants and animals. Molecular Ecology, 21, 1834-1847.
-
(2012)
Molecular Ecology
, vol.21
, pp. 1834-1847
-
-
Coissac, E.1
Riaz, T.2
Puillandre, N.3
-
11
-
-
84859621660
-
New environmental metabarcodes for analysing soil DNA: Potential for studying past and present ecosystems
-
Epp LS, Boessenkool S, Bellemain EP, et al. (2012) New environmental metabarcodes for analysing soil DNA: potential for studying past and present ecosystems. Molecular Ecology, 21, 1821-1833.
-
(2012)
Molecular Ecology
, vol.21
, pp. 1821-1833
-
-
Epp, L.S.1
Boessenkool, S.2
Bellemain, E.P.3
-
12
-
-
46949088285
-
Species detection using environmental DNA from water samples
-
Ficetola GF, Miaud C, Pompanon F, Taberlet P, (2008) Species detection using environmental DNA from water samples. Biology Letters, 4, 423-425.
-
(2008)
Biology Letters
, vol.4
, pp. 423-425
-
-
Ficetola, G.F.1
Miaud, C.2
Pompanon, F.3
Taberlet, P.4
-
13
-
-
75749098365
-
Ancient DNA reveals late survival of mammoth and horse in interior Alaska
-
Haile J, Froese DG, MacPhee RDE, et al. (2009) Ancient DNA reveals late survival of mammoth and horse in interior Alaska. Proceedings of the National Academy of Sciences of the United States of America, 106, 22352-22357.
-
(2009)
Proceedings of the National Academy of Sciences of the United States of America
, vol.106
, pp. 22352-22357
-
-
Haile, J.1
Froese, D.G.2
MacPhee, R.D.E.3
-
14
-
-
33751324390
-
A minimalist barcode can identify a specimen whose DNA is degraded
-
Hajibabaei M, Smith MA, Janzen DH, et al. (2006) A minimalist barcode can identify a specimen whose DNA is degraded. Molecular Ecology Notes, 6, 959-964.
-
(2006)
Molecular Ecology Notes
, vol.6
, pp. 959-964
-
-
Hajibabaei, M.1
Smith, M.A.2
Janzen, D.H.3
-
15
-
-
79954587407
-
Environmental barcoding: A next-generation sequencing approach for biomonitoring applications using river benthos
-
Hajibabaei M, Shokralla S, Zhou X, Singer GAC, Baird DJ, (2011) Environmental barcoding: a next-generation sequencing approach for biomonitoring applications using river benthos. PLoS ONE, 6, e17497.
-
(2011)
PLoS ONE
, vol.6
-
-
Hajibabaei, M.1
Shokralla, S.2
Zhou, X.3
Singer, G.A.C.4
Baird, D.J.5
-
16
-
-
10344227692
-
Metagenomics: Application of genomics to uncultured microorganisms
-
Handelsman J, (2004) Metagenomics: application of genomics to uncultured microorganisms. Microbiology and Molecular Biology Reviews, 68, 669.
-
(2004)
Microbiology and Molecular Biology Reviews
, vol.68
, pp. 669
-
-
Handelsman, J.1
-
17
-
-
0032192790
-
Molecular biological access to the chemistry of unknown soil microbes: A new frontier for natural products
-
Handelsman J, Rondon MR, Brady SF, Clardy J, Goodman RM, (1998) Molecular biological access to the chemistry of unknown soil microbes: a new frontier for natural products. Chemistry and Biology, 5, R245-R249.
-
(1998)
Chemistry and Biology
, vol.5
-
-
Handelsman, J.1
Rondon, M.R.2
Brady, S.F.3
Clardy, J.4
Goodman, R.M.5
-
18
-
-
0037423543
-
Biological identifications through DNA barcodes
-
Hebert PDN, Cywinska A, Ball SL, DeWaard JR, (2003) Biological identifications through DNA barcodes. Proceedings of the Royal Society of London Series B-Biological Sciences, 270, 313-321.
-
(2003)
Proceedings of the Royal Society of London Series B-Biological Sciences
, vol.270
, pp. 313-321
-
-
Hebert, P.D.N.1
Cywinska, A.2
Ball, S.L.3
Dewaard, J.R.4
-
19
-
-
84859619825
-
Plant species richness belowground: Higher richness and new patterns revealed by next-generation sequencing
-
Hiiesalu I, Öpik M, Metsis M, et al. (2012) Plant species richness belowground: higher richness and new patterns revealed by next-generation sequencing. Molecular Ecology, 21, 2004-2016.
-
(2012)
Molecular Ecology
, vol.21
, pp. 2004-2016
-
-
Hiiesalu, I.1
Öpik, M.2
Metsis, M.3
-
20
-
-
84859603942
-
Islands in the ice: Detecting past vegetation on Greenlandic nunataks using historical records and sedimentary ancient DNA meta-barcoding
-
Jørgensen T, Kjær KH, Haile J, et al. (2012a) Islands in the ice: detecting past vegetation on Greenlandic nunataks using historical records and sedimentary ancient DNA meta-barcoding. Molecular Ecology, 21, 1980-1988.
-
(2012)
Molecular Ecology
, vol.21
, pp. 1980-1988
-
-
Jørgensen, T.1
Kjær, K.H.2
Haile, J.3
-
21
-
-
84859596016
-
A comparative study of ancient sedimentary DNA, pollen and macrofossils from permafrost sediments of northern Siberia reveals long-term vegetational stability
-
Jørgensen T, Haile J, Möller P, et al. (2012b) A comparative study of ancient sedimentary DNA, pollen and macrofossils from permafrost sediments of northern Siberia reveals long-term vegetational stability. Molecular Ecology, 21, 1989-2003.
-
(2012)
Molecular Ecology
, vol.21
, pp. 1989-2003
-
-
Jørgensen, T.1
Haile, J.2
Möller, P.3
-
22
-
-
34548546604
-
Cycling of extracellular DNA in the soil environment
-
Levy-Booth DJ, Campbell RG, Gulden RH, et al. (2007) Cycling of extracellular DNA in the soil environment. Soil Biology and Biochemistry, 39, 2977-2991.
-
(2007)
Soil Biology and Biochemistry
, vol.39
, pp. 2977-2991
-
-
Levy-Booth, D.J.1
Campbell, R.G.2
Gulden, R.H.3
-
23
-
-
12744281935
-
The extraction and purification of microbial DNA from sediments
-
Ogram A, Sayler GS, Barkay T, (1987) The extraction and purification of microbial DNA from sediments. Journal of Microbiological Methods, 7, 57-66.
-
(1987)
Journal of Microbiological Methods
, vol.7
, pp. 57-66
-
-
Ogram, A.1
Sayler, G.S.2
Barkay, T.3
-
24
-
-
59449100317
-
Extracellular DNA in soil and sediment: Fate and ecological relevance
-
Pietramellara G, Ascher J, Borgogni F, et al. (2009) Extracellular DNA in soil and sediment: fate and ecological relevance. Biology and Fertility of Soils, 45, 219-235.
-
(2009)
Biology and Fertility of Soils
, vol.45
, pp. 219-235
-
-
Pietramellara, G.1
Ascher, J.2
Borgogni, F.3
-
25
-
-
79953132994
-
Metabarcoding a new way to analyze biodiversity
-
Pompanon F, Coissac E, Taberlet P, (2011) Metabarcoding a new way to analyze biodiversity. Biofutur, 3, 30-32.
-
(2011)
Biofutur
, vol.3
, pp. 30-32
-
-
Pompanon, F.1
Coissac, E.2
Taberlet, P.3
-
26
-
-
84859602598
-
Who is eating what: Diet assessment using next generation sequencing
-
Pompanon F, Deagle BE, Symondson WOC, et al. (2012) Who is eating what: diet assessment using next generation sequencing. Molecular Ecology, 21, 1931-1950.
-
(2012)
Molecular Ecology
, vol.21
, pp. 1931-1950
-
-
Pompanon, F.1
Deagle, B.E.2
Symondson, W.O.C.3
-
27
-
-
78650124255
-
Ecometagenetics confirms high tropical rainforest nematode diversity
-
Porazinska DL, Giblin-Davis RM, Esquivel A, et al. (2010) Ecometagenetics confirms high tropical rainforest nematode diversity. Molecular Ecology, 19, 5521-5530.
-
(2010)
Molecular Ecology
, vol.19
, pp. 5521-5530
-
-
Porazinska, D.L.1
Giblin-Davis, R.M.2
Esquivel, A.3
-
28
-
-
84859589467
-
ABGD, Automatic Barcode Gap Discovery for primary species delimitation
-
Puillandre N, Lambert A, Brouillet S, Achaz G, (2012) ABGD, Automatic Barcode Gap Discovery for primary species delimitation. Molecular Ecology, 21, 1864-1877.
-
(2012)
Molecular Ecology
, vol.21
, pp. 1864-1877
-
-
Puillandre, N.1
Lambert, A.2
Brouillet, S.3
Achaz, G.4
-
29
-
-
82255164364
-
EcoPrimers: Inference of new DNA barcode markers from whole genome sequence analysis
-
Riaz T, Shehzad W, Viari A, et al. (2011) ecoPrimers: inference of new DNA barcode markers from whole genome sequence analysis. Nucleic Acids Research, 39, e145.
-
(2011)
Nucleic Acids Research
, vol.39
-
-
Riaz, T.1
Shehzad, W.2
Viari, A.3
-
30
-
-
18844481269
-
Cloning the soil metagenome: A strategy for accessing the genetic and functional diversity of uncultured microorganisms
-
Rondon MR, August PR, Bettermann AD, et al. (2000) Cloning the soil metagenome: a strategy for accessing the genetic and functional diversity of uncultured microorganisms. Applied and Environmental Microbiology, 66, 2541-2547.
-
(2000)
Applied and Environmental Microbiology
, vol.66
, pp. 2541-2547
-
-
Rondon, M.R.1
August, P.R.2
Bettermann, A.D.3
-
31
-
-
33947238287
-
The Sorcerer II Global Ocean Sampling expedition: Northwest Atlantic through eastern tropical Pacific
-
Rusch DB, Halpern AL, Sutton G, et al. (2007) The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific. PLoS Biology, 5, e77.
-
(2007)
PLoS Biology
, vol.5
-
-
Rusch, D.B.1
Halpern, A.L.2
Sutton, G.3
-
32
-
-
84859617279
-
Carnivore diet analysis based on next generation sequencing: Application to the leopard cat (Prionailurus bengalensis) in Pakistan
-
Shehzad W, Riaz T, Nawaz MA, et al. (2012) Carnivore diet analysis based on next generation sequencing: application to the leopard cat (Prionailurus bengalensis) in Pakistan. Molecular Ecology, 21, 1951-1965.
-
(2012)
Molecular Ecology
, vol.21
, pp. 1951-1965
-
-
Shehzad, W.1
Riaz, T.2
Nawaz, M.A.3
-
33
-
-
84859625932
-
Next-generation sequencing technologies for environmental DNA research
-
Shokralla S, Spall J, Gibson J, Hajibabaei M, (2012) Next-generation sequencing technologies for environmental DNA research. Molecular Ecology, 21, 1794-1805.
-
(2012)
Molecular Ecology
, vol.21
, pp. 1794-1805
-
-
Shokralla, S.1
Spall, J.2
Gibson, J.3
Hajibabaei, M.4
-
34
-
-
84859576222
-
Hidden diversity in diatoms of Kenyan Lake Naivasha: A genetic approach detects temporal variation
-
Stoof-Leichsenring KR, Epp LS, Trauth MH, Tiedemann R, (2012) Hidden diversity in diatoms of Kenyan Lake Naivasha: a genetic approach detects temporal variation. Molecular Ecology, 21, 1918-1930.
-
(2012)
Molecular Ecology
, vol.21
, pp. 1918-1930
-
-
Stoof-Leichsenring, K.R.1
Epp, L.S.2
Trauth, M.H.3
Tiedemann, R.4
-
35
-
-
84859598756
-
Soil sampling and isolation of extracellular DNA from large amount of starting material suitable for metabarcoding studies
-
Taberlet P, Prud'homme S, Campione E, et al. (2012a) Soil sampling and isolation of extracellular DNA from large amount of starting material suitable for metabarcoding studies. Molecular Ecology, 21, 1816-1820.
-
(2012)
Molecular Ecology
, vol.21
, pp. 1816-1820
-
-
Taberlet, P.1
Prud'Homme, S.2
Campione, E.3
-
36
-
-
84859598363
-
Towards next-generation biodiversity assessment using DNA metabarcoding
-
Taberlet P, Coissac E, Pompanon F, Brochmann C, Willerslev E, (2012b) Towards next-generation biodiversity assessment using DNA metabarcoding. Molecular Ecology, 21, 2045-2050.
-
(2012)
Molecular Ecology
, vol.21
, pp. 2045-2050
-
-
Taberlet, P.1
Coissac, E.2
Pompanon, F.3
Brochmann, C.4
Willerslev, E.5
-
37
-
-
20244376755
-
Comparative metagenomics of microbial communities
-
Tringe SG, von Mering C, Kobayashi A, et al. (2005) Comparative metagenomics of microbial communities. Science, 308, 554-557.
-
(2005)
Science
, vol.308
, pp. 554-557
-
-
Tringe, S.G.1
Von Mering, C.2
Kobayashi, A.3
-
38
-
-
0037741943
-
Diverse plant and animal genetic records from Holocene and Pleistocene sediments
-
Willerslev E, Hansen AJ, Binladen J, et al. (2003) Diverse plant and animal genetic records from Holocene and Pleistocene sediments. Science, 300, 791-795.
-
(2003)
Science
, vol.300
, pp. 791-795
-
-
Willerslev, E.1
Hansen, A.J.2
Binladen, J.3
-
39
-
-
34447337482
-
Ancient biomolecules from deep ice cores reveal a forested Southern Greenland
-
Willerslev E, Cappellini E, Boomsma W, et al. (2007) Ancient biomolecules from deep ice cores reveal a forested Southern Greenland. Science, 317, 111-114.
-
(2007)
Science
, vol.317
, pp. 111-114
-
-
Willerslev, E.1
Cappellini, E.2
Boomsma, W.3
-
40
-
-
84859588806
-
The future of environmental DNA in ecology
-
Yoccoz NG, (2012) The future of environmental DNA in ecology. Molecular Ecology, 21, 2031-2038.
-
(2012)
Molecular Ecology
, vol.21
, pp. 2031-2038
-
-
Yoccoz, N.G.1
-
41
-
-
84857404999
-
A fuzzy-set-theory-based approach to analyse species membership in DNA barcoding
-
Zhang A-B, Muster C, Liang H-B, et al. (2012) A fuzzy-set-theory-based approach to analyse species membership in DNA barcoding. Molecular Ecology, 21, 1848-1863.
-
(2012)
Molecular Ecology
, vol.21
, pp. 1848-1863
-
-
Zhang, A.-B.1
Muster, C.2
Liang, H.-B.3
-
42
-
-
84859605159
-
Two decades of describing the unseen majority of aquatic microbial diversity
-
Zinger L, Gobet A, Pommiers T, (2012) Two decades of describing the unseen majority of aquatic microbial diversity. Molecular Ecology, 21, 1878-1896.
-
(2012)
Molecular Ecology
, vol.21
, pp. 1878-1896
-
-
Zinger, L.1
Gobet, A.2
Pommiers, T.3
|