-
1
-
-
77953796347
-
Evolutionary novelty is concentrated at the edge of coral species distributions
-
Budd AF, Pandolfi JM, (2010) Evolutionary novelty is concentrated at the edge of coral species distributions. Science 328: 1558-1561.
-
(2010)
Science
, vol.328
, pp. 1558-1561
-
-
Budd, A.F.1
Pandolfi, J.M.2
-
2
-
-
77956639954
-
Focus issue: the evolution of complexity
-
Gough NR, Wong W, (2010) Focus issue: the evolution of complexity. Sci Signal 3: eg5.
-
(2010)
Sci Signal
, vol.3
-
-
Gough, N.R.1
Wong, W.2
-
3
-
-
0020478245
-
Molecular drive: a cohesive mode of species evolution
-
Dover G, (1982) Molecular drive: a cohesive mode of species evolution. Nature 299: 111-117.
-
(1982)
Nature
, vol.299
, pp. 111-117
-
-
Dover, G.1
-
4
-
-
0032553367
-
Molecular origin of species
-
Nei M, Zhang J, (1998) Molecular origin of species. Science 282: 1428-1429.
-
(1998)
Science
, vol.282
, pp. 1428-1429
-
-
Nei, M.1
Zhang, J.2
-
5
-
-
0035929227
-
Rapid diversification of a species-rich genus of neotropical rain forest trees
-
Richardson JE, Pennington RT, Pennington TD, Hollingsworth PM, (2001) Rapid diversification of a species-rich genus of neotropical rain forest trees. Science 293: 2242-2245.
-
(2001)
Science
, vol.293
, pp. 2242-2245
-
-
Richardson, J.E.1
Pennington, R.T.2
Pennington, T.D.3
Hollingsworth, P.M.4
-
6
-
-
46849087728
-
Phylogenetic signal in the eukaryotic tree of life
-
Sanderson MJ, (2008) Phylogenetic signal in the eukaryotic tree of life. Science 321: 121-123.
-
(2008)
Science
, vol.321
, pp. 121-123
-
-
Sanderson, M.J.1
-
7
-
-
53349160132
-
Rates of molecular evolution are linked to life history in flowering plants
-
Smith SA, Donoghue MJ, (2008) Rates of molecular evolution are linked to life history in flowering plants. Science 322: 86-89.
-
(2008)
Science
, vol.322
, pp. 86-89
-
-
Smith, S.A.1
Donoghue, M.J.2
-
8
-
-
77955784916
-
Origin of a function by tandem gene duplication limits the evolutionary capability of its sister copy
-
Hasselmann M, Lechner S, Schulte C, Beye M, (2010) Origin of a function by tandem gene duplication limits the evolutionary capability of its sister copy. P Nat Acad Sci USA 107: 13378-13383.
-
(2010)
P Nat Acad Sci USA
, vol.107
, pp. 13378-13383
-
-
Hasselmann, M.1
Lechner, S.2
Schulte, C.3
Beye, M.4
-
9
-
-
79953234509
-
A global picture of tRNA genes in plant genomes
-
Michaud M, Cognat V, Duchene AM, Marechal-Drouard L, (2011) A global picture of tRNA genes in plant genomes. Plant J 66: 80-93.
-
(2011)
Plant J
, vol.66
, pp. 80-93
-
-
Michaud, M.1
Cognat, V.2
Duchene, A.M.3
Marechal-Drouard, L.4
-
10
-
-
0037677692
-
ITS2 is a double-edged tool for eukaryote evolutionary comparisons
-
Coleman AW, (2003) ITS2 is a double-edged tool for eukaryote evolutionary comparisons. Trends Genet 19: 370-375.
-
(2003)
Trends Genet
, vol.19
, pp. 370-375
-
-
Coleman, A.W.1
-
11
-
-
57649155508
-
Is there a molecular key to the level of "biological species" in eukaryotes? A DNA guide
-
Coleman AW, (2009) Is there a molecular key to the level of "biological species" in eukaryotes? A DNA guide. Mol Phylogenet Evol 50: 197-203.
-
(2009)
Mol Phylogenet Evol
, vol.50
, pp. 197-203
-
-
Coleman, A.W.1
-
12
-
-
34447254003
-
Better the devil you know? Guidelines for insightful utilization of nrDNA ITS in species-level evolutionary studies in plants
-
Nieto Feliner G, Rossello JA, (2007) Better the devil you know? Guidelines for insightful utilization of nrDNA ITS in species-level evolutionary studies in plants. Mol Phylogenet Evol 44: 911-919.
-
(2007)
Mol Phylogenet Evol
, vol.44
, pp. 911-919
-
-
Nieto Feliner, G.1
Rossello, J.A.2
-
13
-
-
76049119307
-
ITS2 secondary structure improves phylogeny estimation in a radiation of blue butterflies of the subgenus Agrodiaetus (Lepidoptera: Lycaenidae: Polyommatus)
-
Wiemers M, Keller A, Wolf M, (2009) ITS2 secondary structure improves phylogeny estimation in a radiation of blue butterflies of the subgenus Agrodiaetus (Lepidoptera: Lycaenidae: Polyommatus). BMC Evol Biol 9: 300.
-
(2009)
BMC Evol Biol
, vol.9
, pp. 300
-
-
Wiemers, M.1
Keller, A.2
Wolf, M.3
-
14
-
-
77649108109
-
Validation of the ITS2 region as a novel DNA barcode for identifying medicinal plant species
-
Chen SL, Yao H, Han JP, Liu C, Song JY, et al. (2010) Validation of the ITS2 region as a novel DNA barcode for identifying medicinal plant species. PLoS One 5: e8613.
-
(2010)
PLoS One
, vol.5
-
-
Chen, S.L.1
Yao, H.2
Han, J.P.3
Liu, C.4
Song, J.Y.5
-
15
-
-
76749097624
-
Including RNA secondary structures improves accuracy and robustness in reconstruction of phylogenetic trees
-
Keller A, Forster F, Muller T, Dandekar T, Schultz J, et al. (2010) Including RNA secondary structures improves accuracy and robustness in reconstruction of phylogenetic trees. Biol Direct 5: 4.
-
(2010)
Biol Direct
, vol.5
, pp. 4
-
-
Keller, A.1
Forster, F.2
Muller, T.3
Dandekar, T.4
Schultz, J.5
-
16
-
-
75549088448
-
The ITS2 database III-sequences and structures for phylogeny
-
Koetschan C, Forster F, Keller A, Schleicher T, Ruderisch B, et al. (2010) The ITS2 database III-sequences and structures for phylogeny. Nucleic Acids Res 38: D275-279.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Koetschan, C.1
Forster, F.2
Keller, A.3
Schleicher, T.4
Ruderisch, B.5
-
17
-
-
83755207349
-
Comparative analysis of a large dataset indicates that internal transcribed spacer (ITS) should be incorporated into the core barcode for seed plants
-
Chinese Plant BOL Group
-
Chinese Plant BOL Group (2011) Comparative analysis of a large dataset indicates that internal transcribed spacer (ITS) should be incorporated into the core barcode for seed plants. P Nat Acad Sci USA 108: 19641-19646.
-
(2011)
P Nat Acad Sci USA
, vol.108
, pp. 19641-19646
-
-
-
18
-
-
79952401316
-
Applying plant DNA barcodes for Rosaceae species identification
-
Pang XH, Song JY, Zhu YJ, Xu HX, Huang LF, et al. (2011) Applying plant DNA barcodes for Rosaceae species identification. Cladistics 27: 165-170.
-
(2011)
Cladistics
, vol.27
, pp. 165-170
-
-
Pang, X.H.1
Song, J.Y.2
Zhu, Y.J.3
Xu, H.X.4
Huang, L.F.5
-
19
-
-
27944477670
-
Concerted and birth-and-death evolution of multigene families
-
Nei M, Rooney AP, (2005) Concerted and birth-and-death evolution of multigene families. Annu Rev Genet 39: 121-152.
-
(2005)
Annu Rev Genet
, vol.39
, pp. 121-152
-
-
Nei, M.1
Rooney, A.P.2
-
20
-
-
0344613211
-
Ribosomal ITS sequences and plant phylogenetic inference
-
Alvarez I, Wendel JF, (2003) Ribosomal ITS sequences and plant phylogenetic inference. Mol Phylogenet Evol 29: 417-434.
-
(2003)
Mol Phylogenet Evol
, vol.29
, pp. 417-434
-
-
Alvarez, I.1
Wendel, J.F.2
-
21
-
-
37249027666
-
Measuring rDNA diversity in eukaryotic microbial systems: how intragenomic variation, pseudogenes, and PCR artifacts confound biodiversity estimates
-
Thornhill DJ, Lajeunesse TC, Santos SR, (2007) Measuring rDNA diversity in eukaryotic microbial systems: how intragenomic variation, pseudogenes, and PCR artifacts confound biodiversity estimates. Mol Ecol 16: 5326-5340.
-
(2007)
Mol Ecol
, vol.16
, pp. 5326-5340
-
-
Thornhill, D.J.1
Lajeunesse, T.C.2
Santos, S.R.3
-
22
-
-
24044455869
-
Genome sequencing in microfabricated high-density picolitre reactors
-
Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, et al. (2005) Genome sequencing in microfabricated high-density picolitre reactors. Nature 437: 376-380.
-
(2005)
Nature
, vol.437
, pp. 376-380
-
-
Margulies, M.1
Egholm, M.2
Altman, W.E.3
Attiya, S.4
Bader, J.S.5
-
23
-
-
77953738245
-
Paradigm for industrial strain improvement identifies sodium acetate tolerance loci in Zymomonas mobilis and Saccharomyces cerevisiae
-
Yang SH, Land ML, Klingeman DM, Pelletier DA, Lu TYS, et al. (2010) Paradigm for industrial strain improvement identifies sodium acetate tolerance loci in Zymomonas mobilis and Saccharomyces cerevisiae. P Nat Acad Sci USA 107: 10395-10400.
-
(2010)
P Nat Acad Sci USA
, vol.107
, pp. 10395-10400
-
-
Yang, S.H.1
Land, M.L.2
Klingeman, D.M.3
Pelletier, D.A.4
Lu, T.Y.S.5
-
24
-
-
34547834963
-
The use of coded PCR primers enables high-throughput sequencing of multiple homolog amplification products by 454 parallel sequencing
-
Binladen J, Gilbert MTP, Bollback JP, Panitz F, Bendixen C, et al. (2007) The use of coded PCR primers enables high-throughput sequencing of multiple homolog amplification products by 454 parallel sequencing. PLoS One 2: e197.
-
(2007)
PLoS One
, vol.2
-
-
Binladen, J.1
Gilbert, M.T.P.2
Bollback, J.P.3
Panitz, F.4
Bendixen, C.5
-
25
-
-
50949131523
-
Comparative analysis of human gut microbiota by barcoded pyrosequencing
-
Andersson AF, Lindberg M, Jakobsson H, Backhed F, Nyren P, et al. (2008) Comparative analysis of human gut microbiota by barcoded pyrosequencing. PLoS One 3: e2836.
-
(2008)
PLoS One
, vol.3
-
-
Andersson, A.F.1
Lindberg, M.2
Jakobsson, H.3
Backhed, F.4
Nyren, P.5
-
26
-
-
70350294348
-
Systematic artifacts in metagenomes from complex microbial communities
-
Gomez-Alvarez V, Teal TK, Schmidt TM, (2009) Systematic artifacts in metagenomes from complex microbial communities. ISME J 3: 1314-1317.
-
(2009)
ISME J
, vol.3
, pp. 1314-1317
-
-
Gomez-Alvarez, V.1
Teal, T.K.2
Schmidt, T.M.3
-
27
-
-
69549112742
-
Accurate determination of microbial diversity from 454 pyrosequencing data
-
Quince C, Lanzen A, Curtis TP, Davenport RJ, Hall N, et al. (2009) Accurate determination of microbial diversity from 454 pyrosequencing data. Nat Methods 6: 639-641.
-
(2009)
Nat Methods
, vol.6
, pp. 639-641
-
-
Quince, C.1
Lanzen, A.2
Curtis, T.P.3
Davenport, R.J.4
Hall, N.5
-
28
-
-
77649230349
-
Characterization of the oral fungal microbiome (Mycobiome) in healthy individuals
-
Ghannoum MA, Jurevic RJ, Mukherjee PK, Cui F, Sikaroodi M, et al. (2010) Characterization of the oral fungal microbiome (Mycobiome) in healthy individuals. PLoS Pathog 6: e1000713.
-
(2010)
PLoS Pathog
, vol.6
-
-
Ghannoum, M.A.1
Jurevic, R.J.2
Mukherjee, P.K.3
Cui, F.4
Sikaroodi, M.5
-
29
-
-
77951605029
-
EST analysis reveals putative genes involved in glycyrrhizin biosynthesis
-
Li Y, Luo HM, Sun C, Song JY, Sun YZ, et al. (2010) EST analysis reveals putative genes involved in glycyrrhizin biosynthesis. BMC Genomics 11: 268.
-
(2010)
BMC Genomics
, vol.11
, pp. 268
-
-
Li, Y.1
Luo, H.M.2
Sun, C.3
Song, J.Y.4
Sun, Y.Z.5
-
30
-
-
77951121533
-
De novo sequencing and analysis of the American ginseng root transcriptome using a GS FLX titanium platform to discover putative genes involved in ginsenoside biosynthesis
-
Sun C, Li Y, Wu Q, Luo HM, Sun YZ, et al. (2010) De novo sequencing and analysis of the American ginseng root transcriptome using a GS FLX titanium platform to discover putative genes involved in ginsenoside biosynthesis. BMC Genomics 11: 262.
-
(2010)
BMC Genomics
, vol.11
, pp. 262
-
-
Sun, C.1
Li, Y.2
Wu, Q.3
Luo, H.M.4
Sun, Y.Z.5
-
31
-
-
0034649566
-
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
-
The Arabidopsis Genome Initiative
-
The Arabidopsis Genome Initiative, (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408: 796-815.
-
(2000)
Nature
, vol.408
, pp. 796-815
-
-
-
32
-
-
0037023384
-
A draft sequence of the rice genome (Oryza sativa L. ssp. indica)
-
Yu J, Hu S, Wang J, Wong GKS, Li SG, et al. (2002) A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science 296: 79-92.
-
(2002)
Science
, vol.296
, pp. 79-92
-
-
Yu, J.1
Hu, S.2
Wang, J.3
Wong, G.K.S.4
Li, S.G.5
-
33
-
-
0037023349
-
A draft sequence of the rice genome (Oryza sativa L. ssp japonica)
-
Goff SA, Ricke D, Lan TH, Presting G, Wang RL, et al. (2002) A draft sequence of the rice genome (Oryza sativa L. ssp japonica). Science 296: 92-100.
-
(2002)
Science
, vol.296
, pp. 92-100
-
-
Goff, S.A.1
Ricke, D.2
Lan, T.H.3
Presting, G.4
Wang, R.L.5
-
34
-
-
33748760611
-
The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
-
Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, et al. (2006) The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science 313: 1596-1604.
-
(2006)
Science
, vol.313
, pp. 1596-1604
-
-
Tuskan, G.A.1
Difazio, S.2
Jansson, S.3
Bohlmann, J.4
Grigoriev, I.5
-
35
-
-
70450202132
-
The B73 maize genome: complexity, diversity, and dynamics
-
Schnable PS, Ware D, Fulton RS, Stein JC, Wei FS, et al. (2009) The B73 maize genome: complexity, diversity, and dynamics. Science 326: 1112-1115.
-
(2009)
Science
, vol.326
, pp. 1112-1115
-
-
Schnable, P.S.1
Ware, D.2
Fulton, R.S.3
Stein, J.C.4
Wei, F.S.5
-
36
-
-
77952326979
-
Analysing 454 amplicon resequencing experiments using the modular and database oriented variant identification pipeline
-
De Schrijver JM, De Leeneer K, Lefever S, Sabbe N, Pattyn F, et al. (2010) Analysing 454 amplicon resequencing experiments using the modular and database oriented variant identification pipeline. BMC Bioinformatics 11: 269.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 269
-
-
De Schrijver, J.M.1
De Leeneer, K.2
Lefever, S.3
Sabbe, N.4
Pattyn, F.5
-
37
-
-
31844431557
-
Phylogeny of Brassaiopsis (Araliaceae) in Asia based on nuclear ITS and 5S-NTS DNA sequences
-
Mitchell A, Wen J, (2005) Phylogeny of Brassaiopsis (Araliaceae) in Asia based on nuclear ITS and 5S-NTS DNA sequences. Syst Bot 30: 872-886.
-
(2005)
Syst Bot
, vol.30
, pp. 872-886
-
-
Mitchell, A.1
Wen, J.2
-
38
-
-
0028338701
-
Phylogeny from function: evidence from the molecular fossil record that tRNA originated in replication, not translation
-
Maizels N, Weiner AM, (1994) Phylogeny from function: evidence from the molecular fossil record that tRNA originated in replication, not translation. P Nat Acad Sci USA 91: 6729-6734.
-
(1994)
P Nat Acad Sci USA
, vol.91
, pp. 6729-6734
-
-
Maizels, N.1
Weiner, A.M.2
-
39
-
-
63849198290
-
Repetitive sequence variation and dynamics in the ribosomal DNA array of Saccharomyces cerevisiae as revealed by whole-genome resequencing
-
James SA, O'Kelly MJT, Carter DM, Davey RP, van Oudenaarden A, et al. (2009) Repetitive sequence variation and dynamics in the ribosomal DNA array of Saccharomyces cerevisiae as revealed by whole-genome resequencing. Genome Res 19: 626-635.
-
(2009)
Genome Res
, vol.19
, pp. 626-635
-
-
James, S.A.1
O'Kelly, M.J.T.2
Carter, D.M.3
Davey, R.P.4
van Oudenaarden, A.5
-
40
-
-
38849095337
-
Sequence variation within the rRNA gene loci of 12 Drosophila species
-
Stage DE, Eickbush TH, (2007) Sequence variation within the rRNA gene loci of 12 Drosophila species. Genome Res 17: 1888-1897.
-
(2007)
Genome Res
, vol.17
, pp. 1888-1897
-
-
Stage, D.E.1
Eickbush, T.H.2
-
41
-
-
34250821680
-
Pan-eukaryote ITS2 homologies revealed by RNA secondary structure
-
Coleman AW, (2007) Pan-eukaryote ITS2 homologies revealed by RNA secondary structure. Nucleic Acids Res 35: 3322-3329.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 3322-3329
-
-
Coleman, A.W.1
-
42
-
-
0042882537
-
Phylogenetic relationship in the genus Panax: inferred from chloroplast trnK gene and nuclear 18S rRNA gene sequences
-
Zhu S, Fushimi H, Cai SQ, Komatsu K, (2003) Phylogenetic relationship in the genus Panax: inferred from chloroplast trnK gene and nuclear 18S rRNA gene sequences. Planta Med 69: 647-653.
-
(2003)
Planta Med
, vol.69
, pp. 647-653
-
-
Zhu, S.1
Fushimi, H.2
Cai, S.Q.3
Komatsu, K.4
-
43
-
-
2442562566
-
Phylogeny of Panax using chloroplast trnC-trnD intergenic region and the utility of trnC-trnD in interspecific studies of plants
-
Lee C, Wen J, (2004) Phylogeny of Panax using chloroplast trnC-trnD intergenic region and the utility of trnC-trnD in interspecific studies of plants. Mol Phylogenet Evol 31: 894-903.
-
(2004)
Mol Phylogenet Evol
, vol.31
, pp. 894-903
-
-
Lee, C.1
Wen, J.2
-
44
-
-
79952935339
-
The ITS1-5.8S-ITS2 sequence region in the Musaceae: structure, diversity and use in molecular phylogeny
-
Hribova E, Cizkova J, Christelova P, Taudien S, De Langhe E, et al. (2011) The ITS1-5.8S-ITS2 sequence region in the Musaceae: structure, diversity and use in molecular phylogeny. PLoS One 6: e17863.
-
(2011)
PLoS One
, vol.6
-
-
Hribova, E.1
Cizkova, J.2
Christelova, P.3
Taudien, S.4
De Langhe, E.5
-
45
-
-
0001671209
-
A phylogenetic analysis of Prunus and the Amygdaloideae (Rosaceae) using ITS sequences of nuclear ribosomal DNA
-
Lee S, Wen J, (2001) A phylogenetic analysis of Prunus and the Amygdaloideae (Rosaceae) using ITS sequences of nuclear ribosomal DNA. Am J Bot 88: 150-160.
-
(2001)
Am J Bot
, vol.88
, pp. 150-160
-
-
Lee, S.1
Wen, J.2
-
46
-
-
34547814691
-
Phylogeny and classification of Rosaceae
-
Potter D, Eriksson T, Evans RC, Oh S, Smedmark JEE, et al. (2007) Phylogeny and classification of Rosaceae. Plant Syst Evol 266: 5-43.
-
(2007)
Plant Syst Evol
, vol.266
, pp. 5-43
-
-
Potter, D.1
Eriksson, T.2
Evans, R.C.3
Oh, S.4
Smedmark, J.E.E.5
-
47
-
-
56849092296
-
Phylogenetic inferences in Prunus (Rosaceae) using chloroplast ndhF and nuclear ribosomal ITS sequences
-
Wen J, Berggren ST, Lee CH, Ickert-Bond S, Yi TS, et al. (2008) Phylogenetic inferences in Prunus (Rosaceae) using chloroplast ndhF and nuclear ribosomal ITS sequences. J Syst Evol 46: 322-332.
-
(2008)
J Syst Evol
, vol.46
, pp. 322-332
-
-
Wen, J.1
Berggren, S.T.2
Lee, C.H.3
Ickert-Bond, S.4
Yi, T.S.5
-
48
-
-
0028946212
-
Intraspecific and interspecific variation in 5S RNA genes are decoupled in diploid wheat relatives
-
Kellogg EA, Appels R, (1995) Intraspecific and interspecific variation in 5S RNA genes are decoupled in diploid wheat relatives. Genetics 140: 325-343.
-
(1995)
Genetics
, vol.140
, pp. 325-343
-
-
Kellogg, E.A.1
Appels, R.2
-
49
-
-
20444366492
-
Use of DNA barcodes to identify flowering plants
-
Kress WJ, Wurdack KJ, Zimmer EA, Weigt LA, Janzen DH, (2005) Use of DNA barcodes to identify flowering plants. P Nat Acad Sci USA 102: 8369-8374.
-
(2005)
P Nat Acad Sci USA
, vol.102
, pp. 8369-8374
-
-
Kress, W.J.1
Wurdack, K.J.2
Zimmer, E.A.3
Weigt, L.A.4
Janzen, D.H.5
-
50
-
-
69149084832
-
A DNA barcode for land plants
-
CBOL Plant Working Group
-
CBOL Plant Working Group (2009) A DNA barcode for land plants. P Nat Acad Sci USA 106: 12794-12797.
-
(2009)
P Nat Acad Sci USA
, vol.106
, pp. 12794-12797
-
-
-
51
-
-
68149119082
-
Plant bar code soon to become reality
-
Thomas C, (2009) Plant bar code soon to become reality. Science 325: 526-526.
-
(2009)
Science
, vol.325
, pp. 526
-
-
Thomas, C.1
-
53
-
-
84860423705
-
Plant DNA barcoding in China
-
Li DZ, Liu JQ, Chen ZD, Wang H, Ge XJ, et al. (2011) Plant DNA barcoding in China. J Syst Evol 49(3): 165-168.
-
(2011)
J Syst Evol
, vol.49
, Issue.3
, pp. 165-168
-
-
Li, D.Z.1
Liu, J.Q.2
Chen, Z.D.3
Wang, H.4
Ge, X.J.5
-
54
-
-
34347387600
-
A proposal for a standardised protocol to barcode all land plants
-
Chase MW, Cowan RS, Hollingsworth PM, Berg C, Madriñán S, et al. (2007) A proposal for a standardised protocol to barcode all land plants. Taxon 56: 295-299.
-
(2007)
Taxon
, vol.56
, pp. 295-299
-
-
Chase, M.W.1
Cowan, R.S.2
Hollingsworth, P.M.3
Berg, C.4
Madriñán, S.5
-
55
-
-
77951631088
-
A two-locus global DNA barcode for land plants: the coding rbcL gene complements the non-coding trnH-psbA spacer region
-
Kress WJ, Erickson DL, (2007) A two-locus global DNA barcode for land plants: the coding rbcL gene complements the non-coding trnH-psbA spacer region. PLoS One 2: e508.
-
(2007)
PLoS One
, vol.2
-
-
Kress, W.J.1
Erickson, D.L.2
-
56
-
-
84874552744
-
-
Chase MW, Fay MF (2009) Response to J. Schultz and M. Wolf's E-Letter. Sci Signal http://www.sciencemag.org/content/325/5941/682/reply.
-
-
-
-
57
-
-
34247899003
-
Finely orchestrated movements: evolution of the ribosomal RNA genes
-
Eickbush TH, Eickbush DG, (2007) Finely orchestrated movements: evolution of the ribosomal RNA genes. Genetics 175: 477-485.
-
(2007)
Genetics
, vol.175
, pp. 477-485
-
-
Eickbush, T.H.1
Eickbush, D.G.2
-
58
-
-
84874553923
-
-
Schultz J, Wolf M (2009) ITS better than its reputation. Sci Signal http://www.sciencemag.org/content/325/5941/682.full/reply#sci_el_12692.
-
-
-
-
59
-
-
77958142499
-
Evaluating the feasibility of using candidate DNA barcodes in discriminating species of the large Asteraceae family
-
Gao T, Yao H, Song JY, Zhu YJ, Liu C, et al. (2010) Evaluating the feasibility of using candidate DNA barcodes in discriminating species of the large Asteraceae family. BMC Evol Biol 10: 324.
-
(2010)
BMC Evol Biol
, vol.10
, pp. 324
-
-
Gao, T.1
Yao, H.2
Song, J.Y.3
Zhu, Y.J.4
Liu, C.5
-
60
-
-
77953147755
-
Nuclear ribosomal spacer regions in plant phylogenetics: problems and prospects
-
Poczai P, Hyvonen J, (2010) Nuclear ribosomal spacer regions in plant phylogenetics: problems and prospects. Mol Biol Rep 37: 1897-1912.
-
(2010)
Mol Biol Rep
, vol.37
, pp. 1897-1912
-
-
Poczai, P.1
Hyvonen, J.2
-
61
-
-
79951837282
-
Internal transcribed spacer 2 (nu ITS2 rRNA) sequence-structure phylogenetics: towards an automated reconstruction of the green algal tree of life
-
Buchheim MA, Keller A, Koetschan C, Forster F, Merget B, et al. (2011) Internal transcribed spacer 2 (nu ITS2 rRNA) sequence-structure phylogenetics: towards an automated reconstruction of the green algal tree of life. PLoS One 6: e16931.
-
(2011)
PLoS One
, vol.6
-
-
Buchheim, M.A.1
Keller, A.2
Koetschan, C.3
Forster, F.4
Merget, B.5
-
62
-
-
2442516230
-
Recent origin and phylogenetic utility of divergent ITS putative pseudogenes: a case study from Naucleeae (Rubiaceae)
-
Razafimandimbison SG, Kellogg EA, Bremer B, (2004) Recent origin and phylogenetic utility of divergent ITS putative pseudogenes: a case study from Naucleeae (Rubiaceae). Syst Biol 53: 177-192.
-
(2004)
Syst Biol
, vol.53
, pp. 177-192
-
-
Razafimandimbison, S.G.1
Kellogg, E.A.2
Bremer, B.3
-
63
-
-
27144461969
-
Homology modeling revealed more than 20,000 rRNA internal transcribed spacer 2 (ITS2) secondary structures
-
Wolf M, Achtziger M, Schultz J, Dandekar T, Muller T, (2005) Homology modeling revealed more than 20,000 rRNA internal transcribed spacer 2 (ITS2) secondary structures. RNA 11: 1616-1623.
-
(2005)
RNA
, vol.11
, pp. 1616-1623
-
-
Wolf, M.1
Achtziger, M.2
Schultz, J.3
Dandekar, T.4
Muller, T.5
-
64
-
-
38549087890
-
The ITS2 database II: homology modelling RNA structure for molecular systematics
-
Selig C, Wolf M, Muller T, Dandekar T, Schultz J, (2008) The ITS2 database II: homology modelling RNA structure for molecular systematics. Nucleic Acids Res 36: D377-D380.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Selig, C.1
Wolf, M.2
Muller, T.3
Dandekar, T.4
Schultz, J.5
-
65
-
-
67349271005
-
ITS2 sequence-structure analysis in phylogenetics: A how-to manual for molecular systematics
-
Schultz J, Wolf M, (2009) ITS2 sequence-structure analysis in phylogenetics: A how-to manual for molecular systematics. Mol Phylogenet Evol 52: 520-523.
-
(2009)
Mol Phylogenet Evol
, vol.52
, pp. 520-523
-
-
Schultz, J.1
Wolf, M.2
-
66
-
-
58049115079
-
5.8S-28S rRNA interaction and HMM-based ITS2 annotation
-
Keller A, Schleicher T, Schultz J, Muller T, Dandekar T, et al. (2009) 5.8S-28S rRNA interaction and HMM-based ITS2 annotation. Gene 430: 50-57.
-
(2009)
Gene
, vol.430
, pp. 50-57
-
-
Keller, A.1
Schleicher, T.2
Schultz, J.3
Muller, T.4
Dandekar, T.5
-
67
-
-
73149085504
-
Compensatory base changes illuminate morphologically difficult taxonomy
-
Ruhl MW, Wolf M, Jenkins TM, (2010) Compensatory base changes illuminate morphologically difficult taxonomy. Mol Phylogenet Evol 54: 664-669.
-
(2010)
Mol Phylogenet Evol
, vol.54
, pp. 664-669
-
-
Ruhl, M.W.1
Wolf, M.2
Jenkins, T.M.3
-
68
-
-
34548352883
-
Distinguishing species
-
Müller T, Philippi N, Dandekar T, Schultz J, Wolf M, (2007) Distinguishing species. RNA 13: 1469-1472.
-
(2007)
RNA
, vol.13
, pp. 1469-1472
-
-
Müller, T.1
Philippi, N.2
Dandekar, T.3
Schultz, J.4
Wolf, M.5
-
69
-
-
78049313200
-
Use of ITS2 region as the universal DNA barcode for plants and animals
-
Yao H, Song J, Liu C, Luo K, Han JP, et al. (2010) Use of ITS2 region as the universal DNA barcode for plants and animals. PLoS One 5: e13102.
-
(2010)
PLoS One
, vol.5
-
-
Yao, H.1
Song, J.2
Liu, C.3
Luo, K.4
Han, J.P.5
-
70
-
-
83755173031
-
Refining the DNA barcode for land plants
-
Hollingsworth PM, (2011) Refining the DNA barcode for land plants. P Nat Acad Sci USA 108: 19451-19452.
-
(2011)
P Nat Acad Sci USA
, vol.108
, pp. 19451-19452
-
-
Hollingsworth, P.M.1
-
71
-
-
78249257262
-
Species identification of medicinal pteridophytes by a DNA barcode marker, the chloroplast psbA-trnH intergenic region
-
Ma XY, Xie CX, Liu C, Song JY, Yao H, et al. (2010) Species identification of medicinal pteridophytes by a DNA barcode marker, the chloroplast psbA-trnH intergenic region. Biol Pharm Bull 33: 1919-1924.
-
(2010)
Biol Pharm Bull
, vol.33
, pp. 1919-1924
-
-
Ma, X.Y.1
Xie, C.X.2
Liu, C.3
Song, J.Y.4
Yao, H.5
-
72
-
-
84864763733
-
Assessing the potential of candidate DNA barcodes for identifying non-flowering seed plants
-
Pang XH, Luo HM, Sun C, (2012) Assessing the potential of candidate DNA barcodes for identifying non-flowering seed plants. Plant Biol 14: 839-844.
-
(2012)
Plant Biol
, vol.14
, pp. 839-844
-
-
Pang, X.H.1
Luo, H.M.2
Sun, C.3
-
73
-
-
0025982062
-
Construction of T-vectors, a rapid and general system for direct cloning of unmodified PCR products
-
Marchuk D, Drumm M, Saulino A, Collins FS, (1991) Construction of T-vectors, a rapid and general system for direct cloning of unmodified PCR products. Nucleic Acids Res 19: 1154.
-
(1991)
Nucleic Acids Res
, vol.19
, pp. 1154
-
-
Marchuk, D.1
Drumm, M.2
Saulino, A.3
Collins, F.S.4
-
74
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar RC, (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
75
-
-
65449188232
-
Jalview Version 2-a multiple sequence alignment editor and analysis workbench
-
Waterhouse AM, Procter JB, Martin DMA, Clamp M, Barton GJ, (2009) Jalview Version 2-a multiple sequence alignment editor and analysis workbench. Bioinformatics 25: 1189-1191.
-
(2009)
Bioinformatics
, vol.25
, pp. 1189-1191
-
-
Waterhouse, A.M.1
Procter, J.B.2
Martin, D.M.A.3
Clamp, M.4
Barton, G.J.5
-
76
-
-
0019296687
-
A simple method for estimating evolutionary rate of base substitution through comparative studies of nucleotide sequences
-
Kimura M, (1980) A simple method for estimating evolutionary rate of base substitution through comparative studies of nucleotide sequences. J Mol Evol 16: 111-120.
-
(1980)
J Mol Evol
, vol.16
, pp. 111-120
-
-
Kimura, M.1
-
78
-
-
33745628383
-
A survey of nuclear ribosomal internal transcribed spacer substitution rates across angiosperms: an approximate molecular clock with life history effects
-
Kay KM, Whittall JB, Hodges SA, (2006) A survey of nuclear ribosomal internal transcribed spacer substitution rates across angiosperms: an approximate molecular clock with life history effects. BMC Evol Biol 6: 36.
-
(2006)
BMC Evol Biol
, vol.6
, pp. 36
-
-
Kay, K.M.1
Whittall, J.B.2
Hodges, S.A.3
-
79
-
-
41849149675
-
Testing the reliability of genetic methods of species identification via simulation
-
Ross HA, Murugan S, Li WLS, (2008) Testing the reliability of genetic methods of species identification via simulation. Syst Biol 57: 216-230.
-
(2008)
Syst Biol
, vol.57
, pp. 216-230
-
-
Ross, H.A.1
Murugan, S.2
Li, W.L.S.3
|