Biological identifications through DNA barcodes

Proceedings of the Royal Society B: Biological Sciences

Volumn 270, Issue 1512, 2003, Pages 313-321

  Hebert, Paul D N ^a   Cywinska, Alina ^a   Ball, Shelley L ^a   DeWaard, Jeremy R ^a  

^a UNIVERSITY OF GUELPH   (Canada)

Author keywords

Animals; Evolution; Insects; Mitochondrial DNA; Molecular taxonomy; Sequence diversity

Indexed keywords

CYTOCHROME C OXIDASE; DNA;

DNA; EVOLUTION; IDENTIFICATION METHOD; MOLECULAR ANALYSIS;

ARTICLE; BIOLOGY; CONTROLLED STUDY; COST; DNA SEQUENCE; ENZYME ANALYSIS; LEPIDOPTERA; MITOCHONDRION; MOLECULAR EVOLUTION; NONHUMAN; PHYLUM; PRIORITY JOURNAL; SPECIES; TAXONOMY;

ANIMALS; DNA, MITOCHONDRIAL; ELECTRON TRANSPORT COMPLEX IV; EVOLUTION, MOLECULAR; LEPIDOPTERA; PHYLOGENY; POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; VARIATION (GENETICS);

ANIMALIA; HEXAPODA; LEPIDOPTERA;

EID: 0037423543     PISSN: 09628452     EISSN: 14712970     Source Type: Journal    
DOI: 10.1098/rspb.2002.2218     Document Type: Article

References (33)

1. Allander, T., Emerson, S. U., Engle, R. E., Purcell, R. H. & Bukh, J. 2001 A virus discovery method incorporating DNase treatment and its application to the identification of two bovine parvovirus species. Proc. Natl Acad. Sci. USA 98, 11 609-11 614.
2. Avise, J. C. & Walker, D. 1999 Species realities and numbers in sexual vertebrates: perspectives from an asexually transmitted genome. Proc. Natl Acad. Sci. USA 96, 992-995.
3. Brown, B., Emberson, R. M. & Paterson, A. M. 1999 Mitochondrial COI and II provide useful markers for Weiseana (Lepidoptera, Hepialidae) species identification. Bull. Entomol. Res. 89, 287-294.
4. Bucklin, A., Guarnieri, M., Hill, R. S., Bentley, A. M. & Kaartvedt, S. 1999 Taxonomic and systematic assessment of planktonic copepods using mitochondrial COI sequence variation and competitive, species-specific PCR. Hydrobiology 401, 239-254.
5. Cox, A. J. & Hebert, P. D. N. 2001 Colonization, extinction and phylogeographic patterning in a freshwater crustacean. Mol. Ecol. 10, 371-386.
6. Doyle, J. J. & Gaut, B. S. 2000 Evolution of genes and taxa: a primer. Plant Mol. Biol. 42, 1-6.
7. Folmer, O., Black, M., Hoeh, W., Lutz, R. & Vrijenhoek, R. 1994 DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol. Mar. Biol. Biotechnol. 3, 294-299.
8. Gaston, K. J. & Hudson, E. 1994 Regional patterns of diversity and estimates of global insect species richness. Biodivers. Conserv. 3, 493-500.
9. Godfray, H. C. J., Lewis, O. T. & Memmott, J. 1999 Studying insect diversity in the tropics. Phil. Trans. R. Soc. Lond. B 354, 1811-1824. (DOI 10.1098/rstb.1999.0523.)
10. Hamels, J., Gala, L., Dufour, S., Vannuffel, P., Zammatteo, N. & Remacle, J. 2001 Consensus PCR and microarray for diagnosis of the genus Staphylococcus, species, and methicillin resistance. BioTechniques 31, 1364-1372.
11. Hammond, P. 1992 Species inventory. In Global biodiversity: status of the earth's living resources (ed. B. Groombridge), pp. 17-39. London: Chapman & Hall.
12. Hawksworth, D. L. & Kalin-Arroyo, M. T. 1995 Magnitude and distribution of biodiversity. In Global biodiversity assessment (ed. V. H. Heywood), pp. 107-191. Cambridge University Press.
13. Jarman, S. N. & Elliott, N. G. 2000 DNA evidence for morphological and cryptic Cenozoic speciations in the Anaspididae, 'living fossils' from the Triassic. J. Evol. Biol. 13, 624-633.
14. Knowlton, N. 1993 Sibling species in the sea. A. Rev. Ecol. Syst. 24, 189-216.
15. Knowlton, N. & Weigt, L. A. 1998 New dates and new rates for divergence across the Isthmus of Panama. Proc. R. Soc. Lond. B 265, 2257-2263. (DOI 10.1098/rspb.1998.0568.)
16. Kumar, S. & Gadagkar, S. R. 2000 Efficiency of the neighbour-joining method in reconstructing deep and shallow evolutionary relationships in large phylogenies. J. Mol. Evol. 51, 544-553.
17. Kumar, S., Tamura, K., Jacobsen, I. B. & Nei, M. 2001 MEGA2: molecular evolutionary genetics analysis software. Tempe, AZ: Arizona State University.
18. Kurtzman, C. P. 1994 Molecular taxonomy of the yeasts. Yeast 10, 1727-1740.
19. Lessa, P. 1990 Multidimensional scaling of geographic genetic structure. Syst. Zool. 39, 242-252.
20. Lynch, M. & Jarrell, P. E. 1993 A method for calibrating molecular clocks and its application to animal mitochondrial DNA. Genetics 135, 1197-1208.
21. Mardulyn, P. & Whitfield, J. B. 1999 Phylogenetic signal in the COI, 16S, and 28S genes for inferring relationships among genera of Microgastrinae (Hymenoptera: Braconidae): evidence of a high diversification rate in this group of parasitoids. Mol. Phylogenet. Evol. 12, 282-294.
22. Nanney, D. L. 1982 Genes and phenes in Tetrahymena. Bioscience 32, 783-788.
23. Nei, M. & Kumar, S. 2000 Molecular evolution and phylogenetics. Oxford University Press.
24. Novotny, V., Baset, Y., Miller, S. E., Weiblen, G. D., Bremer, B., Cizek, L. & Drezel, P. 2002 Low host specificity of herbivorous insects in a tropical forest. Nature 416, 841-845.
25. Pace, N. R. 1997 A molecular view of microbial diversity and the biosphere. Science 276, 734-740.
26. Saccone, C., DeCarla, G., Gissi, C., Pesole, G. & Reynes, A. 1999 Evolutionary genomics in the Metazoa: the mitochondrial DNA as a model system. Gene 238, 195-210.
27. Simmons, R. B. & Weller, S. J. 2001 Utility and evolution of cytochrome b in insects. Mol. Phylogenet. Evol. 20, 196-210.
28. Trewick, S. A. 2000 Mitochondrial DNA sequences support allozyme evidence for cryptic radiation of New Zealand Peripatoides (Onychophora). Mol. Ecol. 9, 269-282.
29. Vincent, S., Vian, J. M. & Carlotti, M. P. 2000 Partial sequencing of the cytochrome oxidase-b subunit gene. I. A tool for the identification of European species of blow flies for post mortem interval estimation. J. Forensic Sci. 45, 820-823.
30. Wares, J. P. & Cunningham, C. W. 2001 Phylogeography and historical ecology of the North Atlantic intertidal. Evolution 12, 2455-2469.
31. Williams, S. T. & Knowlton, N. 2001 Mitochondrial pseudogenes are pervasive and often insidious in the snapping shrimp Alpheus. Mol. Biol. Evol. 18, 1484-1493.
32. Wilson, K. H. 1995 Molecular biology as a tool for taxonomy. Clin. Infect. Dis. 20(Suppl.), 192-208.
33. Zhang, D.-X. & Hewitt, G. M. 1997 Assessment of the universality and utility of a set of conserved mitochondrial primers in insects. Insect Mol. Biol. 6, 143-150.