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Volumn 10, Issue 1, 2013, Pages

Environmental monitoring using next generation sequencing: Rapid identification of macroinvertebrate bioindicator species

Author keywords

454 pyrosequencing; Barcoding; Bioassessment; Chironomidae; Invertebrates

Indexed keywords

CHIRONOMIDAE; INVERTEBRATA;

EID: 84881066986     PISSN: None     EISSN: 17429994     Source Type: Journal    
DOI: 10.1186/1742-9994-10-45     Document Type: Article
Times cited : (176)

References (80)
  • 1
    • 0019191198 scopus 로고
    • Use of benthos in lake monitoring
    • Wiederholm T. Use of benthos in lake monitoring. J Water Pollut Control Fed 1980, 52:537-547.
    • (1980) J Water Pollut Control Fed , vol.52 , pp. 537-547
    • Wiederholm, T.1
  • 2
    • 0000455812 scopus 로고
    • Water quality assessment of streams using a qualitative collection method for benthic macroinvertebrates
    • Lenat DR. Water quality assessment of streams using a qualitative collection method for benthic macroinvertebrates. J N Am Bentholl Soc 1988, 7:222-233.
    • (1988) J N Am Bentholl Soc , vol.7 , pp. 222-233
    • Lenat, D.R.1
  • 3
    • 21244457312 scopus 로고    scopus 로고
    • Terrestrial and aquatic invertebrates as bioindicators for environmental monitoring, with particular reference to mountain ecosystems
    • 10.1007/s00267-004-0211-x, 15920671
    • Hodkinson ID, Jackson JK. Terrestrial and aquatic invertebrates as bioindicators for environmental monitoring, with particular reference to mountain ecosystems. Environ Manage 2005, 35:649-666. 10.1007/s00267-004-0211-x, 15920671.
    • (2005) Environ Manage , vol.35 , pp. 649-666
    • Hodkinson, I.D.1    Jackson, J.K.2
  • 4
    • 33947226157 scopus 로고    scopus 로고
    • Standardising terrestrial invertebrate biomonitoring techniques across natural and agricultural systems
    • Neville PJ, Yen AL. Standardising terrestrial invertebrate biomonitoring techniques across natural and agricultural systems. Aust J Exp Agric 2007, 47:384-391.
    • (2007) Aust J Exp Agric , vol.47 , pp. 384-391
    • Neville, P.J.1    Yen, A.L.2
  • 5
    • 0000076088 scopus 로고
    • Introduction to freshwater biomonitoring and benthic macroinvertebrates
    • New York, NY, USA: Chapman and Hall, Rosenberg DM, Resh VH
    • Rosenberg DM, Resh VH. Introduction to freshwater biomonitoring and benthic macroinvertebrates. Freshwater biomonitoring and benthic macroinvertebrates 1993, 1-9. New York, NY, USA: Chapman and Hall, Rosenberg DM, Resh VH.
    • (1993) Freshwater biomonitoring and benthic macroinvertebrates , pp. 1-9
    • Rosenberg, D.M.1    Resh, V.H.2
  • 6
    • 30844455104 scopus 로고    scopus 로고
    • Developments in aquatic insect biomonitoring: a comparative analysis of recent approaches
    • 10.1146/annurev.ento.51.110104.151124, 16332221
    • Bonada N, Prat N, Resh VH, Statzner B. Developments in aquatic insect biomonitoring: a comparative analysis of recent approaches. Annu Rev Entomol 2006, 51:495-523. 10.1146/annurev.ento.51.110104.151124, 16332221.
    • (2006) Annu Rev Entomol , vol.51 , pp. 495-523
    • Bonada, N.1    Prat, N.2    Resh, V.H.3    Statzner, B.4
  • 7
    • 61449118069 scopus 로고    scopus 로고
    • Taxonomic sufficiency: the influence of taxonomic resolution on freshwater bioassessments using benthic macroinvertebrates
    • Jones FC. Taxonomic sufficiency: the influence of taxonomic resolution on freshwater bioassessments using benthic macroinvertebrates. Environ Rev 2008, 16:45-69.
    • (2008) Environ Rev , vol.16 , pp. 45-69
    • Jones, F.C.1
  • 8
    • 79952256476 scopus 로고    scopus 로고
    • Can DNA barcodes of stream macroinvertebrates improve descriptions of community structure and water quality?
    • Sweeney BW, Battle JM, Jackson JK, Dapkey T. Can DNA barcodes of stream macroinvertebrates improve descriptions of community structure and water quality?. J N Am Bentholl Soc 2011, 30:195-216.
    • (2011) J N Am Bentholl Soc , vol.30 , pp. 195-216
    • Sweeney, B.W.1    Battle, J.M.2    Jackson, J.K.3    Dapkey, T.4
  • 10
    • 0034211019 scopus 로고    scopus 로고
    • Implications of taxonomic resolution and sample habitat for stream classification at a broad geographical scale
    • Hewlett R. Implications of taxonomic resolution and sample habitat for stream classification at a broad geographical scale. J N Am Bentholl Soc 2000, 19:352-361.
    • (2000) J N Am Bentholl Soc , vol.19 , pp. 352-361
    • Hewlett, R.1
  • 11
    • 0035371779 scopus 로고    scopus 로고
    • Taxonomy and stream ecology -the benefits of genus - and species - level identifications
    • Lenat DR, Resh VH. Taxonomy and stream ecology -the benefits of genus - and species - level identifications. J N Am Bentholl Soc 2001, 20:287-289.
    • (2001) J N Am Bentholl Soc , vol.20 , pp. 287-289
    • Lenat, D.R.1    Resh, V.H.2
  • 12
    • 10644271792 scopus 로고    scopus 로고
    • A field-based microcosm method to assess the effect of polluted urban stream sediments on aquatic macroinvertebrates
    • 10.1897/03-459.1, 15683181
    • Pettigrove V, Hoffmann A. A field-based microcosm method to assess the effect of polluted urban stream sediments on aquatic macroinvertebrates. Environ Toxicol Chem 2005, 24:170-180. 10.1897/03-459.1, 15683181.
    • (2005) Environ Toxicol Chem , vol.24 , pp. 170-180
    • Pettigrove, V.1    Hoffmann, A.2
  • 13
    • 36248972472 scopus 로고    scopus 로고
    • The response of Chironomidae to sediment pollution and other environmental characteristics in urban wetlands
    • Carew ME, Pettigrove V, Cox RL, Hoffmann AA. The response of Chironomidae to sediment pollution and other environmental characteristics in urban wetlands. Freshw Biol 2007, 52:2444-2462.
    • (2007) Freshw Biol , vol.52 , pp. 2444-2462
    • Carew, M.E.1    Pettigrove, V.2    Cox, R.L.3    Hoffmann, A.A.4
  • 14
    • 33750704586 scopus 로고    scopus 로고
    • Stressor tolerance values for benthic macroinvertebrates in Mississippi
    • Bressler D, Stribling J, Paul M, Hicks M. Stressor tolerance values for benthic macroinvertebrates in Mississippi. Hydrobiologia 2006, 573:155-172.
    • (2006) Hydrobiologia , vol.573 , pp. 155-172
    • Bressler, D.1    Stribling, J.2    Paul, M.3    Hicks, M.4
  • 16
    • 2342592535 scopus 로고    scopus 로고
    • Assigning macroinvertebrate tolerance classifications using generalised additive models
    • Yuan LL. Assigning macroinvertebrate tolerance classifications using generalised additive models. Freshw Biol 2004, 49:662-677.
    • (2004) Freshw Biol , vol.49 , pp. 662-677
    • Yuan, L.L.1
  • 17
    • 79955823079 scopus 로고    scopus 로고
    • Phylogenetic signals and ecotoxicological responses: potential implications for aquatic biomonitoring
    • 10.1007/s10646-011-0615-3, 21365200
    • Carew M, Miller A, Hoffmann A. Phylogenetic signals and ecotoxicological responses: potential implications for aquatic biomonitoring. Ecotoxicology 2011, 20:595-606. 10.1007/s10646-011-0615-3, 21365200.
    • (2011) Ecotoxicology , vol.20 , pp. 595-606
    • Carew, M.1    Miller, A.2    Hoffmann, A.3
  • 19
    • 79953701925 scopus 로고    scopus 로고
    • Current progress in DNA barcoding and future implications for entomology
    • Jinbo U, Kato T, Ito M. Current progress in DNA barcoding and future implications for entomology. Entomol Sci 2011, 14:107-124.
    • (2011) Entomol Sci , vol.14 , pp. 107-124
    • Jinbo, U.1    Kato, T.2    Ito, M.3
  • 20
    • 33749535839 scopus 로고    scopus 로고
    • DNA barcoding and taxonomy in Diptera: a tale of high intraspecific variability and low identification success
    • 10.1080/10635150600969864, 17060194
    • Meier R, Shiyang K, Vaidya G, Ng PKL. DNA barcoding and taxonomy in Diptera: a tale of high intraspecific variability and low identification success. Syst Biol 2006, 55:715-728. 10.1080/10635150600969864, 17060194.
    • (2006) Syst Biol , vol.55 , pp. 715-728
    • Meier, R.1    Shiyang, K.2    Vaidya, G.3    Ng, P.K.L.4
  • 21
    • 22944441015 scopus 로고    scopus 로고
    • The utility of DNA markers in classical taxonomy: using cytochrome oxidase I markers to differentiate Australian Cladopelma (Diptera: Chironomidae) midges
    • Carew ME, Pettigrove V, Hoffmann AA. The utility of DNA markers in classical taxonomy: using cytochrome oxidase I markers to differentiate Australian Cladopelma (Diptera: Chironomidae) midges. Ann Entomol Soc Am 2005, 98:587-594.
    • (2005) Ann Entomol Soc Am , vol.98 , pp. 587-594
    • Carew, M.E.1    Pettigrove, V.2    Hoffmann, A.A.3
  • 22
    • 34548435753 scopus 로고    scopus 로고
    • DNA barcoding cannot reliably identify species of the blowfly genus Protocalliphora (Diptera: Calliphoridae)
    • Whitworth TL, Dawson RD, Magalon H, Baudry E. DNA barcoding cannot reliably identify species of the blowfly genus Protocalliphora (Diptera: Calliphoridae). Proc R Soc Lond B Biol Sci 2007, 274:1731-1739.
    • (2007) Proc R Soc Lond B Biol Sci , vol.274 , pp. 1731-1739
    • Whitworth, T.L.1    Dawson, R.D.2    Magalon, H.3    Baudry, E.4
  • 23
    • 35948964127 scopus 로고    scopus 로고
    • DNA identification of urban Tanytarsini chironomids (Diptera: Chironomidae)
    • Carew ME, Pettigrove V, Cox RL, Hoffmann AA. DNA identification of urban Tanytarsini chironomids (Diptera: Chironomidae). J N Am Bentholl Soc 2007, 24:586-599.
    • (2007) J N Am Bentholl Soc , vol.24 , pp. 586-599
    • Carew, M.E.1    Pettigrove, V.2    Cox, R.L.3    Hoffmann, A.A.4
  • 24
    • 2342489381 scopus 로고    scopus 로고
    • DNA taxonomy of a neglected animal phylum: an unexpected diversity of tardigrades
    • Blaxter M, Elsworth B, Daub J. DNA taxonomy of a neglected animal phylum: an unexpected diversity of tardigrades. Proc R Soc Lond B Biol Sci 2004, 271:S189-S192.
    • (2004) Proc R Soc Lond B Biol Sci , vol.271
    • Blaxter, M.1    Elsworth, B.2    Daub, J.3
  • 25
    • 0036010841 scopus 로고    scopus 로고
    • Molecular barcodes for soil nematode identification
    • 10.1046/j.1365-294X.2002.01485.x, 11972769
    • Floyd R, Abebe E, Papert A, Blaxter M. Molecular barcodes for soil nematode identification. Mol Ecol 2002, 11:839-850. 10.1046/j.1365-294X.2002.01485.x, 11972769.
    • (2002) Mol Ecol , vol.11 , pp. 839-850
    • Floyd, R.1    Abebe, E.2    Papert, A.3    Blaxter, M.4
  • 26
    • 79952264429 scopus 로고    scopus 로고
    • DNA barcoding facilitates description of unknown faunas: a case study on Trichoptera in the headwaters of the Tigris River, Iraq
    • Geraci CJ, Al-Saffar MA, Zhou X. DNA barcoding facilitates description of unknown faunas: a case study on Trichoptera in the headwaters of the Tigris River, Iraq. J N Am Bentholl Soc 2011, 30:163-173.
    • (2011) J N Am Bentholl Soc , vol.30 , pp. 163-173
    • Geraci, C.J.1    Al-Saffar, M.A.2    Zhou, X.3
  • 27
    • 33645785620 scopus 로고    scopus 로고
    • DNA-based species delineation in tropical beetles using mitochondrial and nuclear markers
    • 10.1098/rstb.2005.1724, 1609231, 16214750
    • Monaghan MT, Balke M, Gregory TR, Vogler AP. DNA-based species delineation in tropical beetles using mitochondrial and nuclear markers. Philos Trans R Soc Lond B Biol Sci 2005, 360:1925-1933. 10.1098/rstb.2005.1724, 1609231, 16214750.
    • (2005) Philos Trans R Soc Lond B Biol Sci , vol.360 , pp. 1925-1933
    • Monaghan, M.T.1    Balke, M.2    Gregory, T.R.3    Vogler, A.P.4
  • 28
    • 34547183271 scopus 로고    scopus 로고
    • A taxonomic revision of the genus Stempellinella (Diptera: Chironomidae)
    • Ekrem T. A taxonomic revision of the genus Stempellinella (Diptera: Chironomidae). J Nat Hist 2007, 41:1367-1465.
    • (2007) J Nat Hist , vol.41 , pp. 1367-1465
    • Ekrem, T.1
  • 29
    • 62549114950 scopus 로고    scopus 로고
    • Integrated taxonomy: traditional approach and DNA barcoding for the identification of filarioid worms and related parasites (Nematoda)
    • 10.1186/1742-9994-6-1, 2657783, 19128479
    • Ferri E, Barbuto M, Bain O, Galimberti A, Uni S, Guerrero R, Ferté H, Bandi C, Martin C, Casiraghi M. Integrated taxonomy: traditional approach and DNA barcoding for the identification of filarioid worms and related parasites (Nematoda). Front Zool 2009, 6:1-12. 10.1186/1742-9994-6-1, 2657783, 19128479.
    • (2009) Front Zool , vol.6 , pp. 1-12
    • Ferri, E.1    Barbuto, M.2    Bain, O.3    Galimberti, A.4    Uni, S.5    Guerrero, R.6    Ferté, H.7    Bandi, C.8    Martin, C.9    Casiraghi, M.10
  • 30
    • 73349106811 scopus 로고    scopus 로고
    • From 'cryptic species' to integrative taxonomy: an iterative process involving DNA sequences, morphology, and behaviour leads to the resurrection of Sepsis pyrrhosoma (Sepsidae: Diptera)
    • Tan DSH, Ang Y, Lim GS, Ismail MRB, Meier R. From 'cryptic species' to integrative taxonomy: an iterative process involving DNA sequences, morphology, and behaviour leads to the resurrection of Sepsis pyrrhosoma (Sepsidae: Diptera). Zoologica Scripta 2010, 39:51-61.
    • (2010) Zoologica Scripta , vol.39 , pp. 51-61
    • Tan, D.S.H.1    Ang, Y.2    Lim, G.S.3    Ismail, M.R.B.4    Meier, R.5
  • 31
    • 77949336492 scopus 로고    scopus 로고
    • DNA barcoding should accompany taxonomy - the case of Cerebratulus spp (Nemertea)
    • 10.1111/j.1755-0998.2009.02774.x, 21565022
    • Sundberg P, Vodoti ET, Strand M. DNA barcoding should accompany taxonomy - the case of Cerebratulus spp (Nemertea). Mol Ecol Resour 2010, 10:274-281. 10.1111/j.1755-0998.2009.02774.x, 21565022.
    • (2010) Mol Ecol Resour , vol.10 , pp. 274-281
    • Sundberg, P.1    Vodoti, E.T.2    Strand, M.3
  • 32
    • 84881547059 scopus 로고    scopus 로고
    • Investigating the taxonomy and systematics of marine wood borers (Bivalvia: Teredinidae) combining evidence from morphology, DNA barcodes and nuclear locus sequences
    • Borges LMS, Sivrikaya H, le Roux A, Shipway JR, Cragg SM, Costa FO. Investigating the taxonomy and systematics of marine wood borers (Bivalvia: Teredinidae) combining evidence from morphology, DNA barcodes and nuclear locus sequences. Invertebr Syst 2012, 26:572-582.
    • (2012) Invertebr Syst , vol.26 , pp. 572-582
    • Borges, L.M.S.1    Sivrikaya, H.2    le Roux, A.3    Shipway, J.R.4    Cragg, S.M.5    Costa, F.O.6
  • 33
    • 79954587407 scopus 로고    scopus 로고
    • Environmental barcoding: a next-generation sequencing approach for biomonitoring applications using river benthos
    • 10.1371/journal.pone.0017497, 3076369, 21533287
    • Hajibabaei M, Shokralla S, Zhou X, Singer GAC, Baird DJ. Environmental barcoding: a next-generation sequencing approach for biomonitoring applications using river benthos. PLoS ONE 2011, 6:e17497. 10.1371/journal.pone.0017497, 3076369, 21533287.
    • (2011) PLoS ONE , vol.6
    • Hajibabaei, M.1    Shokralla, S.2    Zhou, X.3    Singer, G.A.C.4    Baird, D.J.5
  • 34
    • 84859625932 scopus 로고    scopus 로고
    • Next-generation sequencing technologies for environmental DNA research
    • 10.1111/j.1365-294X.2012.05538.x, 22486820
    • Shokralla S, Spall JL, Gibson JF, Hajibabaei M. Next-generation sequencing technologies for environmental DNA research. Mol Ecol 2012, 21:1794-1805. 10.1111/j.1365-294X.2012.05538.x, 22486820.
    • (2012) Mol Ecol , vol.21 , pp. 1794-1805
    • Shokralla, S.1    Spall, J.L.2    Gibson, J.F.3    Hajibabaei, M.4
  • 35
    • 39449089394 scopus 로고    scopus 로고
    • Parallel tagged sequencing on the 454 platform
    • 10.1038/nprot.2007.520, 18274529
    • Meyer M, Stenzel U, Hofreiter M. Parallel tagged sequencing on the 454 platform. Nat Protoc 2008, 3:267-278. 10.1038/nprot.2007.520, 18274529.
    • (2008) Nat Protoc , vol.3 , pp. 267-278
    • Meyer, M.1    Stenzel, U.2    Hofreiter, M.3
  • 36
    • 36148937913 scopus 로고    scopus 로고
    • A pyrosequencing-tailored nucleotide barcode design unveils opportunities for large-scale sample multiplexing
    • 10.1093/nar/gkm760, 2095802, 17932070
    • Parameswaran P, Jalili R, Tao L, Shokralla S, Gharizadeh B, Ronaghi M, Fire AZ. A pyrosequencing-tailored nucleotide barcode design unveils opportunities for large-scale sample multiplexing. Nucleic Acids Res 2007, 35:e130. 10.1093/nar/gkm760, 2095802, 17932070.
    • (2007) Nucleic Acids Res , vol.35
    • Parameswaran, P.1    Jalili, R.2    Tao, L.3    Shokralla, S.4    Gharizadeh, B.5    Ronaghi, M.6    Fire, A.Z.7
  • 39
    • 78650124255 scopus 로고    scopus 로고
    • Ecometagenetics confirm high tropical rainforest nematode diversity
    • 10.1111/j.1365-294X.2010.04891.x, 21054606
    • Porazinska DL, Giblin-Davis RM, Esquivel A, Powers TO, Sung WAY, Thomas WK. Ecometagenetics confirm high tropical rainforest nematode diversity. Mol Ecol 2010, 19:5521-5530. 10.1111/j.1365-294X.2010.04891.x, 21054606.
    • (2010) Mol Ecol , vol.19 , pp. 5521-5530
    • Porazinska, D.L.1    Giblin-Davis, R.M.2    Esquivel, A.3    Powers, T.O.4    Sung, W.A.Y.5    Thomas, W.K.6
  • 40
    • 84859562300 scopus 로고    scopus 로고
    • Biomonitoring 2.0: a new paradigm in ecosystem assessment made possible by next-generation DNA sequencing
    • 10.1111/j.1365-294X.2012.05519.x, 22590728
    • Baird DJ, Hajibabaei M. Biomonitoring 2.0: a new paradigm in ecosystem assessment made possible by next-generation DNA sequencing. Mol Ecol 2012, 21:2039-2044. 10.1111/j.1365-294X.2012.05519.x, 22590728.
    • (2012) Mol Ecol , vol.21 , pp. 2039-2044
    • Baird, D.J.1    Hajibabaei, M.2
  • 41
    • 22944437363 scopus 로고    scopus 로고
    • Effects of long-chain hydrocarbon-polluted sediment on freshwater macroinvertebrates
    • 10.1897/05-018R.1, 16268151
    • Pettigrove V, Hoffmann A. Effects of long-chain hydrocarbon-polluted sediment on freshwater macroinvertebrates. Environ Toxicol Chem 2005, 24:2500-2508. 10.1897/05-018R.1, 16268151.
    • (2005) Environ Toxicol Chem , vol.24 , pp. 2500-2508
    • Pettigrove, V.1    Hoffmann, A.2
  • 42
    • 29244440755 scopus 로고    scopus 로고
    • A microcosm test of adaptation and species specific responses to polluted sediments applicable to indigenous chironomids (Diptera)
    • 10.1016/j.envpol.2005.05.024, 16099083
    • Bahrndorff S, Ward J, Pettigrove V, Hoffmann AA. A microcosm test of adaptation and species specific responses to polluted sediments applicable to indigenous chironomids (Diptera). Environ Pollut 2006, 139:550-560. 10.1016/j.envpol.2005.05.024, 16099083.
    • (2006) Environ Pollut , vol.139 , pp. 550-560
    • Bahrndorff, S.1    Ward, J.2    Pettigrove, V.3    Hoffmann, A.A.4
  • 43
    • 43649095617 scopus 로고    scopus 로고
    • High molecular weight petroleum hydrocarbons derived from different sources affect freshwater benthic macroinvertebrate assemblages
    • 10.1897/07-414.1, 18419190
    • Anson J, Pettigrove V, Carew ME, Hoffmann AA. High molecular weight petroleum hydrocarbons derived from different sources affect freshwater benthic macroinvertebrate assemblages. Environ Toxicol Chem 2008, 27:1077-1083. 10.1897/07-414.1, 18419190.
    • (2008) Environ Toxicol Chem , vol.27 , pp. 1077-1083
    • Anson, J.1    Pettigrove, V.2    Carew, M.E.3    Hoffmann, A.A.4
  • 44
    • 55849097300 scopus 로고    scopus 로고
    • Effects of sediment quality on macroinvertebrates in the Sunraysia region of the Murray-Darling Rivers, Australia
    • 10.1016/j.envpol.2008.06.014, 18657342
    • Sharley DJ, Hoffmann AA, Pettigrove V. Effects of sediment quality on macroinvertebrates in the Sunraysia region of the Murray-Darling Rivers, Australia. Environ Pollut 2008, 156:689-698. 10.1016/j.envpol.2008.06.014, 18657342.
    • (2008) Environ Pollut , vol.156 , pp. 689-698
    • Sharley, D.J.1    Hoffmann, A.A.2    Pettigrove, V.3
  • 45
    • 84985774775 scopus 로고
    • Chironomid communities as water quality indicators
    • Sæther OA. Chironomid communities as water quality indicators. Holarct Ecol 1979, 2:65-74.
    • (1979) Holarct Ecol , vol.2 , pp. 65-74
    • Sæther, O.A.1
  • 46
    • 0002373966 scopus 로고
    • Classification of water-bodies and pollution
    • London, U.K: Chapman and Hall, Armitage PD, Cranston PS, Pinder LCV
    • Lindegaard C. Classification of water-bodies and pollution. The Chironomidae: the ecology and biology of non-biting midges 1995, 385-404. London, U.K: Chapman and Hall, Armitage PD, Cranston PS, Pinder LCV.
    • (1995) The Chironomidae: the ecology and biology of non-biting midges , pp. 385-404
    • Lindegaard, C.1
  • 47
    • 0034105593 scopus 로고    scopus 로고
    • Long-term data assessment of chironomid taxa structure and function in the River Thames
    • Ruse L, Davison M. Long-term data assessment of chironomid taxa structure and function in the River Thames. Regulated Rivers-Res Manage 2000, 16:113-126.
    • (2000) Regulated Rivers-Res Manage , vol.16 , pp. 113-126
    • Ruse, L.1    Davison, M.2
  • 49
    • 0034009578 scopus 로고    scopus 로고
    • Chironomidae (Diptera) species distribution related to environmental characteristics of the metal-polluted Arkansas River, Colorado
    • Ruse LP, Herrmann SJ, Sublette JE. Chironomidae (Diptera) species distribution related to environmental characteristics of the metal-polluted Arkansas River, Colorado. West N Am Nat 2000, 60:34-56.
    • (2000) West N Am Nat , vol.60 , pp. 34-56
    • Ruse, L.P.1    Herrmann, S.J.2    Sublette, J.E.3
  • 50
    • 0036309565 scopus 로고    scopus 로고
    • Impact source determination with biomonitoring data in New York State: concordance with environmental data
    • Riva-Murray K, Bode RW, Phillips PJ, Wall GL. Impact source determination with biomonitoring data in New York State: concordance with environmental data. Northeast Nat 2002, 9:127-162.
    • (2002) Northeast Nat , vol.9 , pp. 127-162
    • Riva-Murray, K.1    Bode, R.W.2    Phillips, P.J.3    Wall, G.L.4
  • 51
    • 59849128124 scopus 로고    scopus 로고
    • The effects of sediment quality on benthic macroinvertebrates in the River Murray, Australia
    • Townsend KR, Pettigrove VJ, Carew ME, Hoffmann AA. The effects of sediment quality on benthic macroinvertebrates in the River Murray, Australia. Mar Freshw Res 2009, 60:70-82.
    • (2009) Mar Freshw Res , vol.60 , pp. 70-82
    • Townsend, K.R.1    Pettigrove, V.J.2    Carew, M.E.3    Hoffmann, A.A.4
  • 52
    • 77955698006 scopus 로고    scopus 로고
    • Combining rapid bioassessment and field-based microcosms for identifying impacts in an urban river
    • O'Brien ML, Pettigrove V, Carew ME, Hoffmann AA. Combining rapid bioassessment and field-based microcosms for identifying impacts in an urban river. Environ Toxicol Chem 2010, 29:1773-1780.
    • (2010) Environ Toxicol Chem , vol.29 , pp. 1773-1780
    • O'Brien, M.L.1    Pettigrove, V.2    Carew, M.E.3    Hoffmann, A.A.4
  • 53
    • 77950031551 scopus 로고    scopus 로고
    • Isolating the impact of sediment toxicity in urban streams
    • 10.1016/j.envpol.2009.11.019, 20071061
    • Marshall S, Pettigrove V, Carew M, Hoffmann A. Isolating the impact of sediment toxicity in urban streams. Environ Pollut 2010, 158:1716-1725. 10.1016/j.envpol.2009.11.019, 20071061.
    • (2010) Environ Pollut , vol.158 , pp. 1716-1725
    • Marshall, S.1    Pettigrove, V.2    Carew, M.3    Hoffmann, A.4
  • 56
    • 34248161638 scopus 로고    scopus 로고
    • A comprehensive DNA sequence library is essential for identification with DNA barcodes
    • 10.1016/j.ympev.2006.11.021, 17208018
    • Ekrem T, Willassen E, Stur E. A comprehensive DNA sequence library is essential for identification with DNA barcodes. Mol Phylogenet Evol 2007, 43:530-542. 10.1016/j.ympev.2006.11.021, 17208018.
    • (2007) Mol Phylogenet Evol , vol.43 , pp. 530-542
    • Ekrem, T.1    Willassen, E.2    Stur, E.3
  • 57
    • 34247367142 scopus 로고    scopus 로고
    • Utility of DNA taxonomy and barcoding for the inference of larval community structure in morphologically cryptic Chironomus (Diptera) species
    • 10.1111/j.1365-294X.2006.03136.x, 17444904
    • Pfenninger M, Nowak C, Kley C, Steinke D, Streit B. Utility of DNA taxonomy and barcoding for the inference of larval community structure in morphologically cryptic Chironomus (Diptera) species. Mol Ecol 2007, 16:1957-1968. 10.1111/j.1365-294X.2006.03136.x, 17444904.
    • (2007) Mol Ecol , vol.16 , pp. 1957-1968
    • Pfenninger, M.1    Nowak, C.2    Kley, C.3    Steinke, D.4    Streit, B.5
  • 58
    • 56449115107 scopus 로고    scopus 로고
    • Discrimination of Cricotopus species (Diptera: Chironomidae) by DNA barcoding
    • 10.1017/S0007485308005865, 18590594
    • Sinclair CS, Gresens SE. Discrimination of Cricotopus species (Diptera: Chironomidae) by DNA barcoding. Bull Entomol Res 2008, 98:555-563. 10.1017/S0007485308005865, 18590594.
    • (2008) Bull Entomol Res , vol.98 , pp. 555-563
    • Sinclair, C.S.1    Gresens, S.E.2
  • 59
    • 84866642478 scopus 로고    scopus 로고
    • Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring
    • Yu DW, Ji Y, Emerson BC, Wang X, Ye C, Yang C, Ding Z. Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring. Meth Ecol Evol 2012, 3:613-623.
    • (2012) Meth Ecol Evol , vol.3 , pp. 613-623
    • Yu, D.W.1    Ji, Y.2    Emerson, B.C.3    Wang, X.4    Ye, C.5    Yang, C.6    Ding, Z.7
  • 61
    • 29144517946 scopus 로고    scopus 로고
    • Reverse taxonomy: an approach towards determining the diversity of meiobenthic organisms based on ribosomal RNA signature sequences
    • 10.1098/rstb.2005.1723, 1609229, 16214749
    • Markmann M, Tautz D. Reverse taxonomy: an approach towards determining the diversity of meiobenthic organisms based on ribosomal RNA signature sequences. Philos Trans R Soc Lond B Biol Sci 2005, 360:1917-1924. 10.1098/rstb.2005.1723, 1609229, 16214749.
    • (2005) Philos Trans R Soc Lond B Biol Sci , vol.360 , pp. 1917-1924
    • Markmann, M.1    Tautz, D.2
  • 62
    • 77956283658 scopus 로고    scopus 로고
    • 454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases
    • 10.1111/j.1469-8137.2010.03373.x, 20636324
    • Tedersoo L, Nilsson RH, Abarenkov K, Jairus T, Sadam A, Saar I, Bahram M, Bechem E, Chuyong G, Kõljalg U. 454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases. New Phytol 2010, 188:291-301. 10.1111/j.1469-8137.2010.03373.x, 20636324.
    • (2010) New Phytol , vol.188 , pp. 291-301
    • Tedersoo, L.1    Nilsson, R.H.2    Abarenkov, K.3    Jairus, T.4    Sadam, A.5    Saar, I.6    Bahram, M.7    Bechem, E.8    Chuyong, G.9    Kõljalg, U.10
  • 63
    • 25144477008 scopus 로고    scopus 로고
    • Biological identifications of mayflies (Ephemeroptera) using DNA barcoding
    • Ball SL, Hebert PDN, Burian SK, Webb JM. Biological identifications of mayflies (Ephemeroptera) using DNA barcoding. J N Am Bentholl Soc 2005, 24:508-524.
    • (2005) J N Am Bentholl Soc , vol.24 , pp. 508-524
    • Ball, S.L.1    Hebert, P.D.N.2    Burian, S.K.3    Webb, J.M.4
  • 64
    • 65349144283 scopus 로고    scopus 로고
    • Identification of Nearctic black flies using DNA barcodes (Diptera: Simuliidae)
    • Rivera J, Currie DC. Identification of Nearctic black flies using DNA barcodes (Diptera: Simuliidae). Mol Ecol Resour 2009, 9:224-236.
    • (2009) Mol Ecol Resour , vol.9 , pp. 224-236
    • Rivera, J.1    Currie, D.C.2
  • 67
    • 0035118903 scopus 로고    scopus 로고
    • Rare species in multivariate analysis for bioassessment: some considerations
    • Cao Y, Larsen DP, Thorne RS-J. Rare species in multivariate analysis for bioassessment: some considerations. J N Am Bentholl Soc 2001, 20:144-153.
    • (2001) J N Am Bentholl Soc , vol.20 , pp. 144-153
    • Cao, Y.1    Larsen, D.P.2    Thorne, R.S.-J.3
  • 68
    • 0036276113 scopus 로고    scopus 로고
    • Do rare species have any place in multivariate analysis for bioassessment?
    • Marchant R. Do rare species have any place in multivariate analysis for bioassessment?. J N Am Bentholl Soc 2002, 21:311-313.
    • (2002) J N Am Bentholl Soc , vol.21 , pp. 311-313
    • Marchant, R.1
  • 69
    • 28844466392 scopus 로고    scopus 로고
    • How common are rare taxa in long-term benthic macroinvertebrate surveys?
    • Resh VH, Beche LA, McElravy EP. How common are rare taxa in long-term benthic macroinvertebrate surveys?. J N Am Bentholl Soc 2005, 24:976-989.
    • (2005) J N Am Bentholl Soc , vol.24 , pp. 976-989
    • Resh, V.H.1    Beche, L.A.2    McElravy, E.P.3
  • 70
    • 84867098660 scopus 로고    scopus 로고
    • Don't make a mista(g)ke: is tag switching an overlooked source of error in amplicon pyrosequencing studies?
    • Carlsen T, Aas AB, Lindner D, Vrålstad T, Schumacher T, Kauserud H. Don't make a mista(g)ke: is tag switching an overlooked source of error in amplicon pyrosequencing studies?. Fungal Ecol 2012, 5:747-749.
    • (2012) Fungal Ecol , vol.5 , pp. 747-749
    • Carlsen, T.1    Aas, A.B.2    Lindner, D.3    Vrålstad, T.4    Schumacher, T.5    Kauserud, H.6
  • 71
    • 77954025874 scopus 로고    scopus 로고
    • Reproducibility of read numbers in high-throughput sequencing analysis of nematode community composition and structure
    • Porazinska DL, Sung WAY, Giblin-Davis RM, Thomas WK. Reproducibility of read numbers in high-throughput sequencing analysis of nematode community composition and structure. Mol Ecol Resour 2010, 10:666-676.
    • (2010) Mol Ecol Resour , vol.10 , pp. 666-676
    • Porazinska, D.L.1    Sung, W.A.Y.2    Giblin-Davis, R.M.3    Thomas, W.K.4
  • 72
    • 1642465044 scopus 로고    scopus 로고
    • Evolution and phylogenetic utility of CAD (rudimentary) among Mesozoic-aged Eremoneuran Diptera (Insecta)
    • 10.1016/S1055-7903(03)00284-7, 15019631
    • Moulton JK, Wiegmann BM. Evolution and phylogenetic utility of CAD (rudimentary) among Mesozoic-aged Eremoneuran Diptera (Insecta). Mol Phylogenet Evol 2004, 31:363-378. 10.1016/S1055-7903(03)00284-7, 15019631.
    • (2004) Mol Phylogenet Evol , vol.31 , pp. 363-378
    • Moulton, J.K.1    Wiegmann, B.M.2
  • 73
    • 85027955797 scopus 로고    scopus 로고
    • A combination of molecular and morphological approaches resolves species in the taxonomically difficult genus Procladius Skuse (Diptera: Chironomidae) despite high intra-specific morphological variation
    • 10.1017/S000748531100006X, 21388576
    • Carew ME, Marshall SE, Hoffmann AA. A combination of molecular and morphological approaches resolves species in the taxonomically difficult genus Procladius Skuse (Diptera: Chironomidae) despite high intra-specific morphological variation. Bull Entomol Res 2011, 101:505-519. 10.1017/S000748531100006X, 21388576.
    • (2011) Bull Entomol Res , vol.101 , pp. 505-519
    • Carew, M.E.1    Marshall, S.E.2    Hoffmann, A.A.3
  • 74
    • 79955099501 scopus 로고    scopus 로고
    • Systematics and biogeography of the Gondwanan Orthocladiinae (Diptera: Chironomidae)
    • 10.1016/j.ympev.2011.03.003, 21402162
    • Krosch MN, Baker AM, Mather PB, Cranston PS. Systematics and biogeography of the Gondwanan Orthocladiinae (Diptera: Chironomidae). Mol Phylogenet Evol 2011, 59:458-468. 10.1016/j.ympev.2011.03.003, 21402162.
    • (2011) Mol Phylogenet Evol , vol.59 , pp. 458-468
    • Krosch, M.N.1    Baker, A.M.2    Mather, P.B.3    Cranston, P.S.4
  • 75
    • 0346966835 scopus 로고    scopus 로고
    • Identifying chironomids (Diptera: Chironomidae) for biological monitoring with PCR-RFLP
    • Carew ME, Pettigrove V, Hoffmann AA. Identifying chironomids (Diptera: Chironomidae) for biological monitoring with PCR-RFLP. Bull Entomol Res 2003, 93:483-490.
    • (2003) Bull Entomol Res , vol.93 , pp. 483-490
    • Carew, M.E.1    Pettigrove, V.2    Hoffmann, A.A.3
  • 76
    • 84881557071 scopus 로고    scopus 로고
    • Biomatters
    • Biomatters Geneious version 5.6.6 http://www.geneious.com/, Biomatters.
    • Geneious version 5.6.6
  • 77
    • 0028528103 scopus 로고
    • DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates
    • Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol Mar Biol Biotechnol 1994, 3:294-299.
    • (1994) Mol Mar Biol Biotechnol , vol.3 , pp. 294-299
    • Folmer, O.1    Black, M.2    Hoeh, W.3    Lutz, R.4    Vrijenhoek, R.5
  • 78
    • 0034771970 scopus 로고    scopus 로고
    • Phylogeny of the genus Chironomus (Diptera) inferred from DNA sequences of mitochondrial Cytochrome b and Cytochrome oxidase I
    • 10.1006/mpev.2001.0898, 11286487
    • Guryev V, Mararevitch I, Blinov A, Martin J. Phylogeny of the genus Chironomus (Diptera) inferred from DNA sequences of mitochondrial Cytochrome b and Cytochrome oxidase I. Mol Phylogenet Evol 2001, 19:9-21. 10.1006/mpev.2001.0898, 11286487.
    • (2001) Mol Phylogenet Evol , vol.19 , pp. 9-21
    • Guryev, V.1    Mararevitch, I.2    Blinov, A.3    Martin, J.4
  • 79
    • 0028223964 scopus 로고
    • The cytochrome b region in the mitochondrial DNA of the ant Tetraponera rufoniger: sequence divergence in Hymenoptera may be associated with nucleotide content
    • Jermiin LS, Crozier RH. The cytochrome b region in the mitochondrial DNA of the ant Tetraponera rufoniger: sequence divergence in Hymenoptera may be associated with nucleotide content. J Mol Evol 1994, 38:282-294.
    • (1994) J Mol Evol , vol.38 , pp. 282-294
    • Jermiin, L.S.1    Crozier, R.H.2
  • 80
    • 84862831815 scopus 로고    scopus 로고
    • Universal primers for fluorescent labelling of PCR fragments-an efficient and cost-effective approach to genotyping by fluorescence
    • 10.1111/j.1755-0998.2011.03104.x, 22268566
    • Blacket MJ, Robin C, Good RT, Lee SF, Miller AD. Universal primers for fluorescent labelling of PCR fragments-an efficient and cost-effective approach to genotyping by fluorescence. Mol Ecol Resour 2012, 12:456-463. 10.1111/j.1755-0998.2011.03104.x, 22268566.
    • (2012) Mol Ecol Resour , vol.12 , pp. 456-463
    • Blacket, M.J.1    Robin, C.2    Good, R.T.3    Lee, S.F.4    Miller, A.D.5


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