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Volumn 6, Issue 1, 2015, Pages

Spotting the enemy within: Targeted silencing of foreign DNA in mammalian genomes by the Krüppel-associated box zinc finger protein family

Author keywords

Adaptive evolution; Endogenous retroviruses; Epigenetic silencing; KRAB zinc finger proteins; Transcription factors; Transposable elements

Indexed keywords

HISTONE DEACETYLASE; KRUPPEL LIKE FACTOR; MEMBRANE PROTEIN; PROTEIN KAP1; SMALL INTERFERING RNA; UNCLASSIFIED DRUG; ZINC FINGER PROTEIN; ZINC FINGER PROTEIN 10; ZINC FINGER PROTEIN 175; ZINC FINGER PROTEIN 282; ZINC FINGER PROTEIN 350; ZINC FINGER PROTEIN 57; ZINC FINGER PROTEIN 809; ZINC FINGER PROTEIN 819; ZINC FINGER PROTEIN 91; ZINC FINGER PROTEIN 93;

EID: 84942683513     PISSN: None     EISSN: 17598753     Source Type: Journal    
DOI: 10.1186/s13100-015-0050-8     Document Type: Review
Times cited : (87)

References (200)
  • 1
    • 58949084539 scopus 로고    scopus 로고
    • Adaptive evolution in zinc finger transcription factors
    • Emerson RO, Thomas JH. Adaptive evolution in zinc finger transcription factors. PLoS Genet. 2009;5(1):e1000325. doi:10.1371/journal.pgen.1000325.
    • (2009) PLoS Genet. , vol.5 , Issue.1 , pp. e1000325
    • Emerson, R.O.1    Thomas, J.H.2
  • 2
    • 0346274978 scopus 로고    scopus 로고
    • KRAB-containing zinc-finger repressor proteins
    • Urrutia R. KRAB-containing zinc-finger repressor proteins. Genome Biol. 2003;4(10):231. doi:10.1186/gb-2003-4-10-231.
    • (2003) Genome Biol. , vol.4 , Issue.10 , pp. 231
    • Urrutia, R.1
  • 3
    • 84881147545 scopus 로고    scopus 로고
    • Gene knockout and knockin by zinc-finger nucleases: Current status and perspectives
    • Hauschild-Quintern J, Petersen B, Cost GJ, Niemann H. Gene knockout and knockin by zinc-finger nucleases: current status and perspectives. CMLS. 2013;70(16):2969-83. doi:10.1007/s00018-012-1204-1.
    • (2013) CMLS , vol.70 , Issue.16 , pp. 2969-2983
    • Hauschild-Quintern, J.1    Petersen, B.2    Cost, G.J.3    Niemann, H.4
  • 4
    • 33747816812 scopus 로고    scopus 로고
    • Zinc finger tools: Custom DNA-binding domains for transcription factors and nucleases
    • Web Server issue
    • Mandell JG, Barbas III CF. Zinc Finger Tools: custom DNA-binding domains for transcription factors and nucleases. Nucleic Acids Res. 2006;34 (Web Server issue):W516-23. doi:10.1093/nar/gkl209.
    • (2006) Nucleic Acids Res. , vol.34 , pp. W516-W523
    • Mandell, J.G.1    Barbas, C.F.2
  • 5
    • 84878785823 scopus 로고    scopus 로고
    • KRAB-zinc finger proteins: A repressor family displaying multiple biological functions
    • Lupo A, Cesaro E, Montano G, Zurlo D, Izzo P, Costanzo P. KRAB-Zinc Finger Proteins: A Repressor Family Displaying Multiple Biological Functions. Current genomics. 2013;14(4):268-78. doi:10.2174/13892029113149990002.
    • (2013) Current Genomics , vol.14 , Issue.4 , pp. 268-278
    • Lupo, A.1    Cesaro, E.2    Montano, G.3    Zurlo, D.4    Izzo, P.5    Costanzo, P.6
  • 6
    • 33745179207 scopus 로고    scopus 로고
    • A comprehensive catalog of human KRAB-associated zinc finger genes: Insights into the evolutionary history of a large family of transcriptional repressors
    • Huntley S, Baggott DM, Hamilton AT, Tran-Gyamfi M, Yang S, Kim J, et al. A comprehensive catalog of human KRAB-associated zinc finger genes: insights into the evolutionary history of a large family of transcriptional repressors. Genome Res. 2006;16(5):669-77. doi:10.1101/gr.4842106.
    • (2006) Genome Res. , vol.16 , Issue.5 , pp. 669-677
    • Huntley, S.1    Baggott, D.M.2    Hamilton, A.T.3    Tran-Gyamfi, M.4    Yang, S.5    Kim, J.6
  • 7
    • 84924666261 scopus 로고    scopus 로고
    • The KRAB zinc finger protein ZFP809 is required to initiate epigenetic silencing of endogenous retroviruses
    • Wolf G, Yang P, Fuchtbauer AC, Fuchtbauer EM, Silva AM, Park C, et al. The KRAB zinc finger protein ZFP809 is required to initiate epigenetic silencing of endogenous retroviruses. Genes Dev. 2015;29(5):538-54. doi:10.1101/gad.252767.114.
    • (2015) Genes Dev. , vol.29 , Issue.5 , pp. 538-554
    • Wolf, G.1    Yang, P.2    Fuchtbauer, A.C.3    Fuchtbauer, E.M.4    Silva, A.M.5    Park, C.6
  • 8
    • 84922971647 scopus 로고    scopus 로고
    • An evolutionary arms race between KRAB zinc-finger genes ZNF91/93 and SVA/L1 retrotransposons
    • Jacobs FM, Greenberg D, Nguyen N, Haeussler M, Ewing AD, Katzman S, et al. An evolutionary arms race between KRAB zinc-finger genes ZNF91/93 and SVA/L1 retrotransposons. Nature. 2014;516(7530):242-5. doi:10.1038/nature13760.
    • (2014) Nature , vol.516 , Issue.7530 , pp. 242-245
    • Jacobs, F.M.1    Greenberg, D.2    Nguyen, N.3    Haeussler, M.4    Ewing, A.D.5    Katzman, S.6
  • 11
    • 84903761124 scopus 로고    scopus 로고
    • Interplay of TRIM28 and DNA methylation in controlling human endogenous retroelements
    • Turelli P, Castro-Diaz N, Marzetta F, Kapopoulou A, Raclot C, Duc J, et al. Interplay of TRIM28 and DNA methylation in controlling human endogenous retroelements. Genome Res. 2014;24(8):1260-70. doi:10.1101/gr.172833.114.
    • (2014) Genome Res. , vol.24 , Issue.8 , pp. 1260-1270
    • Turelli, P.1    Castro-Diaz, N.2    Marzetta, F.3    Kapopoulou, A.4    Raclot, C.5    Duc, J.6
  • 12
    • 33751374804 scopus 로고    scopus 로고
    • Meisetz and the birth of the KRAB motif
    • Birtle Z, Ponting CP. Meisetz and the birth of the KRAB motif. Bioinformatics. 2006;22(23):2841-5. doi:10.1093/bioinformatics/btl498.
    • (2006) Bioinformatics , vol.22 , Issue.23 , pp. 2841-2845
    • Birtle, Z.1    Ponting, C.P.2
  • 13
    • 58449092929 scopus 로고    scopus 로고
    • A mouse speciation gene encodes a meiotic histone H3 methyltransferase
    • Mihola O, Trachtulec Z, Vlcek C, Schimenti JC, Forejt J. A mouse speciation gene encodes a meiotic histone H3 methyltransferase. Science. 2009;323(5912):373-5. doi:10.1126/science.1163601.
    • (2009) Science , vol.323 , Issue.5912 , pp. 373-375
    • Mihola, O.1    Trachtulec, Z.2    Vlcek, C.3    Schimenti, J.C.4    Forejt, J.5
  • 14
    • 84902969662 scopus 로고    scopus 로고
    • Prdm9 polymorphism unveils mouse evolutionary tracks
    • Kono H, Tamura M, Osada N, Suzuki H, Abe K, Moriwaki K, et al. Prdm9 polymorphism unveils mouse evolutionary tracks. DNA Res. 2014;21(3):315-26. doi:10.1093/dnares/dst059.
    • (2014) DNA Res. , vol.21 , Issue.3 , pp. 315-326
    • Kono, H.1    Tamura, M.2    Osada, N.3    Suzuki, H.4    Abe, K.5    Moriwaki, K.6
  • 15
    • 84902957298 scopus 로고    scopus 로고
    • Deep vertebrate roots for mammalian zinc finger transcription factor subfamilies
    • Liu H, Chang LH, Sun Y, Lu X, Stubbs L. Deep vertebrate roots for mammalian zinc finger transcription factor subfamilies. Genome Biol Evol. 2014;6(3):510-25. doi:10.1093/gbe/evu030.
    • (2014) Genome Biol Evol. , vol.6 , Issue.3 , pp. 510-525
    • Liu, H.1    Chang, L.H.2    Sun, Y.3    Lu, X.4    Stubbs, L.5
  • 16
    • 1542563409 scopus 로고    scopus 로고
    • Initial sequencing and comparative analysis of the mouse genome
    • Mouse Genome Sequencing C, Waterston RH, Lindblad-Toh K, Birney E, Rogers J, Abril JF, et al. Initial sequencing and comparative analysis of the mouse genome. Nature. 2002;420(6915):520-62. doi:10.1038/nature01262.
    • (2002) Nature , vol.420 , Issue.6915 , pp. 520-562
    • Waterston, R.H.1    Lindblad-Toh, K.2    Birney, E.3    Rogers, J.4    Abril, J.F.5
  • 17
    • 84878947541 scopus 로고    scopus 로고
    • Genomics and evolution of the TRIM gene family
    • Meroni G. Genomics and evolution of the TRIM gene family. Adv Exp Med Biol. 2012;770:1-9.
    • (2012) Adv Exp Med Biol. , vol.770 , pp. 1-9
    • Meroni, G.1
  • 18
    • 80655143442 scopus 로고    scopus 로고
    • Gypsy and the birth of the SCAN domain
    • Emerson RO, Thomas JH. Gypsy and the birth of the SCAN domain. J Virol. 2011;85(22):12043-52. doi:10.1128/JVI.00867-11.
    • (2011) J Virol. , vol.85 , Issue.22 , pp. 12043-12052
    • Emerson, R.O.1    Thomas, J.H.2
  • 19
    • 44849089416 scopus 로고    scopus 로고
    • Keep your fingers off my DNA: Protein-protein interactions mediated by C2H2 zinc finger domains
    • Brayer KJ, Segal DJ. Keep your fingers off my DNA: protein-protein interactions mediated by C2H2 zinc finger domains. Cell Biochem Biophys. 2008;50(3):111-31. doi:10.1007/s12013-008-9008-5.
    • (2008) Cell Biochem Biophys. , vol.50 , Issue.3 , pp. 111-131
    • Brayer, K.J.1    Segal, D.J.2
  • 20
    • 0037306261 scopus 로고    scopus 로고
    • Transcriptional activities of the zinc finger protein Zac are differentially controlled by DNA binding
    • Hoffmann A, Ciani E, Boeckardt J, Holsboer F, Journot L, Spengler D. Transcriptional activities of the zinc finger protein Zac are differentially controlled by DNA binding. Mol Cell Biol. 2003;23(3):988-1003.
    • (2003) Mol Cell Biol. , vol.23 , Issue.3 , pp. 988-1003
    • Hoffmann, A.1    Ciani, E.2    Boeckardt, J.3    Holsboer, F.4    Journot, L.5    Spengler, D.6
  • 21
    • 0034695506 scopus 로고    scopus 로고
    • OAZ uses distinct DNA- and protein-binding zinc fingers in separate BMPSmad and Olf signaling pathways
    • Hata A, Seoane J, Lagna G, Montalvo E, Hemmati-Brivanlou A, Massague J. OAZ uses distinct DNA- and protein-binding zinc fingers in separate BMPSmad and Olf signaling pathways. Cell. 2000;100(2):229-40.
    • (2000) Cell , vol.100 , Issue.2 , pp. 229-240
    • Hata, A.1    Seoane, J.2    Lagna, G.3    Montalvo, E.4    Hemmati-Brivanlou, A.5    Massague, J.6
  • 22
    • 34250159524 scopus 로고    scopus 로고
    • Genome-wide mapping of in vivo protein-DNA interactions
    • Johnson DS, Mortazavi A, Myers RM, Wold B. Genome-wide mapping of in vivo protein-DNA interactions. Science. 2007;316(5830):1497-502. doi:10.1126/science.1141319.
    • (2007) Science , vol.316 , Issue.5830 , pp. 1497-1502
    • Johnson, D.S.1    Mortazavi, A.2    Myers, R.M.3    Wold, B.4
  • 23
    • 0027423758 scopus 로고
    • Crystal structure of a five-finger GLI-DNA complex: New perspectives on zinc fingers
    • Pavletich NP, Pabo CO. Crystal structure of a five-finger GLI-DNA complex: new perspectives on zinc fingers. Science. 1993;261(5129):1701-7.
    • (1993) Science , vol.261 , Issue.5129 , pp. 1701-1707
    • Pavletich, N.P.1    Pabo, C.O.2
  • 24
    • 84878590595 scopus 로고    scopus 로고
    • A genome-wide map of CTCF multivalency redefines the CTCF code
    • Nakahashi H, Kwon KR, Resch W, Vian L, Dose M, Stavreva D, et al. A genome-wide map of CTCF multivalency redefines the CTCF code. Cell reports. 2013;3(5):1678-89. doi:10.1016/j.celrep.2013.04.024.
    • (2013) Cell Reports , vol.3 , Issue.5 , pp. 1678-1689
    • Nakahashi, H.1    Kwon, K.R.2    Resch, W.3    Vian, L.4    Dose, M.5    Stavreva, D.6
  • 25
    • 0025773296 scopus 로고
    • Zinc finger-DNA recognition: Crystal structure of a Zif268-DNA complex at 2.1 A
    • Pavletich NP, Pabo CO. Zinc finger-DNA recognition: crystal structure of a Zif268-DNA complex at 2.1 A. Science. 1991;252(5007):809-17.
    • (1991) Science , vol.252 , Issue.5007 , pp. 809-817
    • Pavletich, N.P.1    Pabo, C.O.2
  • 26
    • 84899846624 scopus 로고    scopus 로고
    • An improved predictive recognition model for Cys(2)-His(2) zinc finger proteins
    • Gupta A, Christensen RG, Bell HA, Goodwin M, Patel RY, Pandey M, et al. An improved predictive recognition model for Cys(2)-His(2) zinc finger proteins. Nucleic Acids Res. 2014;42(8):4800-12. doi:10.1093/nar/gku132.
    • (2014) Nucleic Acids Res. , vol.42 , Issue.8 , pp. 4800-4812
    • Gupta, A.1    Christensen, R.G.2    Bell, H.A.3    Goodwin, M.4    Patel, R.Y.5    Pandey, M.6
  • 27
    • 84891757744 scopus 로고    scopus 로고
    • De novo prediction of DNA-binding specificities for Cys2His2 zinc finger proteins
    • Persikov AV, Singh M. De novo prediction of DNA-binding specificities for Cys2His2 zinc finger proteins. Nucleic Acids Res. 2014;42(1):97-108. doi:10.1093/nar/gkt890.
    • (2014) Nucleic Acids Res. , vol.42 , Issue.1 , pp. 97-108
    • Persikov, A.V.1    Singh, M.2
  • 28
    • 84875505675 scopus 로고    scopus 로고
    • A common mode of recognition for methylated CpG
    • Liu Y, Zhang X, Blumenthal RM, Cheng X. A common mode of recognition for methylated CpG. Trends Biochem Sci. 2013;38(4):177-83. doi:10.1016/j.tibs.2012.12.005.
    • (2013) Trends Biochem Sci. , vol.38 , Issue.4 , pp. 177-183
    • Liu, Y.1    Zhang, X.2    Blumenthal, R.M.3    Cheng, X.4
  • 29
    • 80555156105 scopus 로고    scopus 로고
    • In embryonic stem cells, ZFP57/KAP1 recognize a methylated hexanucleotide to affect chromatin and DNA methylation of imprinting control regions
    • Quenneville S, Verde G, Corsinotti A, Kapopoulou A, Jakobsson J, Offner S, et al. In embryonic stem cells, ZFP57/KAP1 recognize a methylated hexanucleotide to affect chromatin and DNA methylation of imprinting control regions. Mol Cell. 2011;44(3):361-72. doi:10.1016/j.molcel.2011.08.032.
    • (2011) Mol Cell. , vol.44 , Issue.3 , pp. 361-372
    • Quenneville, S.1    Verde, G.2    Corsinotti, A.3    Kapopoulou, A.4    Jakobsson, J.5    Offner, S.6
  • 32
    • 0034602922 scopus 로고    scopus 로고
    • Reconstitution of the KRAB-KAP-1 repressor complex: A model system for defining the molecular anatomy of RING-B box-coiled-coil domainmediated protein-protein interactions
    • Peng H, Begg GE, Schultz DC, Friedman JR, Jensen DE, Speicher DW, et al. Reconstitution of the KRAB-KAP-1 repressor complex: a model system for defining the molecular anatomy of RING-B box-coiled-coil domainmediated protein-protein interactions. J Mol Biol. 2000;295(5):1139-62. doi:10.1006/jmbi.1999.3402.
    • (2000) J Mol Biol. , vol.295 , Issue.5 , pp. 1139-1162
    • Peng, H.1    Begg, G.E.2    Schultz, D.C.3    Friedman, J.R.4    Jensen, D.E.5    Speicher, D.W.6
  • 33
    • 0035118229 scopus 로고    scopus 로고
    • Targeting histone deacetylase complexes via KRAB-zinc finger proteins: The PHD and bromodomains of KAP-1 form a cooperative unit that recruits a novel isoform of the Mi-2alpha subunit of NuRD
    • Schultz DC, Friedman JR, Rauscher 3rd FJ. Targeting histone deacetylase complexes via KRAB-zinc finger proteins: the PHD and bromodomains of KAP-1 form a cooperative unit that recruits a novel isoform of the Mi-2alpha subunit of NuRD. Genes Dev. 2001;15(4):428-43. doi:10.1101/gad.869501.
    • (2001) Genes Dev. , vol.15 , Issue.4 , pp. 428-443
    • Schultz, D.C.1    Friedman, J.R.2    Rauscher, F.J.3
  • 34
    • 0037089626 scopus 로고    scopus 로고
    • SETDB1: A novel KAP-1-associated histone H3, lysine 9-specific methyltransferase that contributes to HP1-mediated silencing of euchromatic genes by KRAB zinc-finger proteins
    • Schultz DC, Ayyanathan K, Negorev D, Maul GG, Rauscher 3rd FJ. SETDB1: a novel KAP-1-associated histone H3, lysine 9-specific methyltransferase that contributes to HP1-mediated silencing of euchromatic genes by KRAB zinc-finger proteins. Genes Dev. 2002;16(8):919-32. doi:10.1101/gad.973302.
    • (2002) Genes Dev. , vol.16 , Issue.8 , pp. 919-932
    • Schultz, D.C.1    Ayyanathan, K.2    Negorev, D.3    Maul, G.G.4    Rauscher, F.J.5
  • 35
    • 36348930084 scopus 로고    scopus 로고
    • The Kruppel-associated box repressor domain can trigger de novo promoter methylation during mouse early embryogenesis
    • Wiznerowicz M, Jakobsson J, Szulc J, Liao S, Quazzola A, Beermann F, et al. The Kruppel-associated box repressor domain can trigger de novo promoter methylation during mouse early embryogenesis. J Biol Chem. 2007;282(47):34535-41. doi:10.1074/jbc.M705898200.
    • (2007) J Biol Chem. , vol.282 , Issue.47 , pp. 34535-34541
    • Wiznerowicz, M.1    Jakobsson, J.2    Szulc, J.3    Liao, S.4    Quazzola, A.5    Beermann, F.6
  • 36
    • 84872088060 scopus 로고    scopus 로고
    • De novo DNA methylation of endogenous retroviruses is shaped by KRAB-ZFPs/KAP1 and ESET
    • Rowe HM, Friedli M, Offner S, Verp S, Mesnard D, Marquis J, et al. De novo DNA methylation of endogenous retroviruses is shaped by KRAB-ZFPs/KAP1 and ESET. Development. 2013;140(3):519-29. doi:10.1242/dev.087585.
    • (2013) Development , vol.140 , Issue.3 , pp. 519-529
    • Rowe, H.M.1    Friedli, M.2    Offner, S.3    Verp, S.4    Mesnard, D.5    Marquis, J.6
  • 37
    • 0033838255 scopus 로고    scopus 로고
    • Molecular determinants for targeting heterochromatin protein 1-mediated gene silencing: Direct chromoshadow domain-KAP-1 corepressor interaction is essential
    • Lechner MS, Begg GE, Speicher DW, Rauscher 3rd FJ. Molecular determinants for targeting heterochromatin protein 1-mediated gene silencing: direct chromoshadow domain-KAP-1 corepressor interaction is essential. Mol Cell Biol. 2000;20(17):6449-65.
    • (2000) Mol Cell Biol. , vol.20 , Issue.17 , pp. 6449-6465
    • Lechner, M.S.1    Begg, G.E.2    Speicher, D.W.3    Rauscher, F.J.4
  • 38
    • 0038412822 scopus 로고    scopus 로고
    • The DNA methyltransferases associate with HP1 and the SUV39H1 histone methyltransferase
    • Fuks F, Hurd PJ, Deplus R, Kouzarides T. The DNA methyltransferases associate with HP1 and the SUV39H1 histone methyltransferase. Nucleic Acids Res. 2003;31(9):2305-12.
    • (2003) Nucleic Acids Res. , vol.31 , Issue.9 , pp. 2305-2312
    • Fuks, F.1    Hurd, P.J.2    Deplus, R.3    Kouzarides, T.4
  • 39
    • 77950421703 scopus 로고    scopus 로고
    • KRAB-zinc finger proteins and KAP1 can mediate long-range transcriptional repression through heterochromatin spreading
    • Groner AC, Meylan S, Ciuffi A, Zangger N, Ambrosini G, Denervaud N, et al. KRAB-zinc finger proteins and KAP1 can mediate long-range transcriptional repression through heterochromatin spreading. PLoS Genet. 2010;6(3):e1000869. doi:10.1371/journal.pgen.1000869.
    • (2010) PLoS Genet. , vol.6 , Issue.3 , pp. e1000869
    • Groner, A.C.1    Meylan, S.2    Ciuffi, A.3    Zangger, N.4    Ambrosini, G.5    Denervaud, N.6
  • 40
    • 84924359019 scopus 로고    scopus 로고
    • HnRNP K coordinates transcriptional silencing by SETDB1 in embryonic stem cells
    • Thompson PJ, Dulberg V, Moon KM, Foster LJ, Chen C, Karimi MM, et al. hnRNP K coordinates transcriptional silencing by SETDB1 in embryonic stem cells. PLoS Genet. 2015;11(1):e1004933. doi:10.1371/journal.pgen.1004933.
    • (2015) PLoS Genet. , vol.11 , Issue.1 , pp. e1004933
    • Thompson, P.J.1    Dulberg, V.2    Moon, K.M.3    Foster, L.J.4    Chen, C.5    Karimi, M.M.6
  • 43
  • 44
    • 84919949716 scopus 로고    scopus 로고
    • A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping
    • Rao SS, Huntley MH, Durand NC, Stamenova EK, Bochkov ID, Robinson JT, et al. A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping. Cell. 2014;159(7):1665-80. doi:10.1016/j.cell.2014.11.021.
    • (2014) Cell , vol.159 , Issue.7 , pp. 1665-1680
    • Rao, S.S.1    Huntley, M.H.2    Durand, N.C.3    Stamenova, E.K.4    Bochkov, I.D.5    Robinson, J.T.6
  • 45
    • 33845295138 scopus 로고    scopus 로고
    • Human heterochromatin proteins form large domains containing KRAB-ZNF genes
    • Vogel MJ, Guelen L, de Wit E, Peric-Hupkes D, Loden M, Talhout W, et al. Human heterochromatin proteins form large domains containing KRAB-ZNF genes. Genome Res. 2006;16(12):1493-504. doi:10.1101/gr.5391806.
    • (2006) Genome Res. , vol.16 , Issue.12 , pp. 1493-1504
    • Vogel, M.J.1    Guelen, L.2    De Wit, E.3    Peric-Hupkes, D.4    Loden, M.5    Talhout, W.6
  • 46
    • 79955400147 scopus 로고    scopus 로고
    • Relationship between gene body DNA methylation and intragenic H3K9me3 and H3K36me3 chromatin marks
    • Hahn MA, Wu X, Li AX, Hahn T, Pfeifer GP. Relationship between gene body DNA methylation and intragenic H3K9me3 and H3K36me3 chromatin marks. PLoS One. 2011;6(4):e18844. doi:10.1371/journal.pone.0018844.
    • (2011) PLoS One , vol.6 , Issue.4 , pp. e18844
    • Hahn, M.A.1    Wu, X.2    Li, A.X.3    Hahn, T.4    Pfeifer, G.P.5
  • 47
    • 78650081714 scopus 로고    scopus 로고
    • ZNF274 recruits the histone methyltransferase SETDB1 to the 3′ ends of ZNF genes
    • Frietze S, O'Geen H, Blahnik KR, Jin VX, Farnham PJ. ZNF274 recruits the histone methyltransferase SETDB1 to the 3′ ends of ZNF genes. PLoS One. 2010;5(12):e15082. doi:10.1371/journal.pone.0015082.
    • (2010) PLoS One , vol.5 , Issue.12 , pp. e15082
    • Frietze, S.1    O'Geen, H.2    Blahnik, K.R.3    Jin, V.X.4    Farnham, P.J.5
  • 48
    • 34347353316 scopus 로고    scopus 로고
    • Genome-wide analysis of KAP1 binding suggests autoregulation of KRABZNFs
    • O'Geen H, Squazzo SL, Iyengar S, Blahnik K, Rinn JL, Chang HY, et al. Genome-wide analysis of KAP1 binding suggests autoregulation of KRABZNFs. PLoS Genet. 2007;3(6):e89. doi:10.1371/journal.pgen.0030089.
    • (2007) PLoS Genet. , vol.3 , Issue.6 , pp. e89
    • O'Geen, H.1    Squazzo, S.L.2    Iyengar, S.3    Blahnik, K.4    Rinn, J.L.5    Chang, H.Y.6
  • 49
    • 33745134398 scopus 로고    scopus 로고
    • Evolutionary expansion and divergence in the ZNF91 subfamily of primatespecific zinc finger genes
    • Hamilton AT, Huntley S, Tran-Gyamfi M, Baggott DM, Gordon L, Stubbs L. Evolutionary expansion and divergence in the ZNF91 subfamily of primatespecific zinc finger genes. Genome Res. 2006;16(5):584-94. doi:10.1101/gr.4843906.
    • (2006) Genome Res. , vol.16 , Issue.5 , pp. 584-594
    • Hamilton, A.T.1    Huntley, S.2    Tran-Gyamfi, M.3    Baggott, D.M.4    Gordon, L.5    Stubbs, L.6
  • 50
    • 8444235984 scopus 로고    scopus 로고
    • Adaptive evolution drives the diversification of zinc-finger binding domains
    • Schmidt D, Durrett R. Adaptive evolution drives the diversification of zinc-finger binding domains. Mol Biol Evol. 2004;21(12):2326-39. doi:10.1093/molbev/msh246.
    • (2004) Mol Biol Evol. , vol.21 , Issue.12 , pp. 2326-2339
    • Schmidt, D.1    Durrett, R.2
  • 51
    • 77958130019 scopus 로고    scopus 로고
    • Rapid sequence and expression divergence suggest selection for novel function in primatespecific KRAB-ZNF genes
    • Nowick K, Hamilton AT, Zhang H, Stubbs L. Rapid sequence and expression divergence suggest selection for novel function in primatespecific KRAB-ZNF genes. Mol Biol Evol. 2010;27(11):2606-17. doi:10.1093/molbev/msq157.
    • (2010) Mol Biol Evol. , vol.27 , Issue.11 , pp. 2606-2617
    • Nowick, K.1    Hamilton, A.T.2    Zhang, H.3    Stubbs, L.4
  • 52
    • 0025920615 scopus 로고
    • The evolutionarily conserved Kruppel-associated box domain defines a subfamily of eukaryotic multifingered proteins
    • Bellefroid EJ, Poncelet DA, Lecocq PJ, Revelant O, Martial JA. The evolutionarily conserved Kruppel-associated box domain defines a subfamily of eukaryotic multifingered proteins. Proc Natl Acad Sci U S A. 1991;88(9):3608-12.
    • (1991) Proc Natl Acad Sci U S A , vol.88 , Issue.9 , pp. 3608-3612
    • Bellefroid, E.J.1    Poncelet, D.A.2    Lecocq, P.J.3    Revelant, O.4    Martial, J.A.5
  • 53
    • 0031573481 scopus 로고    scopus 로고
    • HUB1, a novel Kruppel type zinc finger protein, represses the human T cell leukemia virus type I long terminal repeat-mediated expression
    • Okumura K, Sakaguchi G, Naito K, Tamura T, Igarashi H. HUB1, a novel Kruppel type zinc finger protein, represses the human T cell leukemia virus type I long terminal repeat-mediated expression. Nucleic Acids Res. 1997;25(24):5025-32.
    • (1997) Nucleic Acids Res. , vol.25 , Issue.24 , pp. 5025-5032
    • Okumura, K.1    Sakaguchi, G.2    Naito, K.3    Tamura, T.4    Igarashi, H.5
  • 54
    • 0037088582 scopus 로고    scopus 로고
    • A novel zinc finger transcription factor with two isoforms that are differentially repressed by estrogen receptor-alpha
    • Conroy AT, Sharma M, Holtz AE, Wu C, Sun Z, Weigel RJ. A novel zinc finger transcription factor with two isoforms that are differentially repressed by estrogen receptor-alpha. J Biol Chem. 2002;277(11):9326-34. doi:10.1074/jbc.M107702200.
    • (2002) J Biol Chem. , vol.277 , Issue.11 , pp. 9326-9334
    • Conroy, A.T.1    Sharma, M.2    Holtz, A.E.3    Wu, C.4    Sun, Z.5    Weigel, R.J.6
  • 55
    • 34548460204 scopus 로고    scopus 로고
    • Lineage-specific expansion of the zinc finger associated domain ZAD
    • Chung HR, Lohr U, Jackle H. Lineage-specific expansion of the zinc finger associated domain ZAD. Mol Biol Evol. 2007;24(9):1934-43. doi:10.1093/molbev/msm121.
    • (2007) Mol Biol Evol. , vol.24 , Issue.9 , pp. 1934-1943
    • Chung, H.R.1    Lohr, U.2    Jackle, H.3
  • 56
    • 0027178112 scopus 로고
    • Evidence for a clustered genomic organization of FAX-zinc finger protein encoding transcription units in Xenopus laevis
    • Nietfeld W, Conrad S, van Wijk I, Giltay R, Bouwmeester T, Knochel W, et al. Evidence for a clustered genomic organization of FAX-zinc finger protein encoding transcription units in Xenopus laevis. J Mol Biol. 1993;230(2):400-12. doi:10.1006/jmbi.1993.1158.
    • (1993) J Mol Biol. , vol.230 , Issue.2 , pp. 400-412
    • Nietfeld, W.1    Conrad, S.2    Van Wijk, I.3    Giltay, R.4    Bouwmeester, T.5    Knochel, W.6
  • 58
    • 84872131850 scopus 로고    scopus 로고
    • Whole exome sequencing identified a novel zinc-finger gene ZNF141 associated with autosomal recessive postaxial polydactyly type A
    • Kalsoom UE, Klopocki E, Wasif N, Tariq M, Khan S, Hecht J, et al. Whole exome sequencing identified a novel zinc-finger gene ZNF141 associated with autosomal recessive postaxial polydactyly type A. J Med Genet. 2013;50(1):47-53. doi:10.1136/jmedgenet-2012-101219.
    • (2013) J Med Genet. , vol.50 , Issue.1 , pp. 47-53
    • Kalsoom, U.E.1    Klopocki, E.2    Wasif, N.3    Tariq, M.4    Khan, S.5    Hecht, J.6
  • 59
    • 74049139555 scopus 로고    scopus 로고
    • Genomic targets of the KRAB and SCAN domain-containing zinc finger protein 263
    • Frietze S, Lan X, Jin VX, Farnham PJ. Genomic targets of the KRAB and SCAN domain-containing zinc finger protein 263. J Biol Chem. 2010;285(2):1393-403. doi:10.1074/jbc.M109.063032.
    • (2010) J Biol Chem. , vol.285 , Issue.2 , pp. 1393-1403
    • Frietze, S.1    Lan, X.2    Jin, V.X.3    Farnham, P.J.4
  • 60
    • 84874288644 scopus 로고    scopus 로고
    • Global and stage specific patterns of Kruppel-associated-box zinc finger protein gene expression in murine early embryonic cells
    • Corsinotti A, Kapopoulou A, Gubelmann C, Imbeault M, de Sio FR S, Rowe HM, et al. Global and stage specific patterns of Kruppel-associated-box zinc finger protein gene expression in murine early embryonic cells. PLoS One. 2013;8(2):e56721. doi:10.1371/journal.pone.0056721.
    • (2013) PLoS One , vol.8 , Issue.2 , pp. e56721
    • Corsinotti, A.1    Kapopoulou, A.2    Gubelmann, C.3    Imbeault, M.4    De Sio, F.R.S.5    Rowe, H.M.6
  • 61
    • 84876341593 scopus 로고    scopus 로고
    • A KRAB/KAP1-miRNA cascade regulates erythropoiesis through stage-specific control of mitophagy
    • Barde I, Rauwel B, Marin-Florez RM, Corsinotti A, Laurenti E, Verp S, et al. A KRAB/KAP1-miRNA cascade regulates erythropoiesis through stage-specific control of mitophagy. Science. 2013;340(6130):350-3. doi:10.1126/science.1232398.
    • (2013) Science , vol.340 , Issue.6130 , pp. 350-353
    • Barde, I.1    Rauwel, B.2    Marin-Florez, R.M.3    Corsinotti, A.4    Laurenti, E.5    Verp, S.6
  • 62
    • 84899841708 scopus 로고    scopus 로고
    • Kruppel-associated box (KRAB) proteins in the adaptive immune system
    • Santoni de Sio FR. Kruppel-associated box (KRAB) proteins in the adaptive immune system. Nucleus. 2014;5(2):138-48. doi:10.4161/nucl.28738.
    • (2014) Nucleus , vol.5 , Issue.2 , pp. 138-148
    • Santoni De-Sio, F.R.1
  • 63
    • 76049088399 scopus 로고    scopus 로고
    • Differences in human and chimpanzee gene expression patterns define an evolving network of transcription factors in brain
    • Nowick K, Gernat T, Almaas E, Stubbs L. Differences in human and chimpanzee gene expression patterns define an evolving network of transcription factors in brain. Proc Natl Acad Sci U S A. 2009;106(52):22358-63. doi:10.1073/pnas.0911376106.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , Issue.52 , pp. 22358-22363
    • Nowick, K.1    Gernat, T.2    Almaas, E.3    Stubbs, L.4
  • 64
    • 80555142988 scopus 로고    scopus 로고
    • Coevolution of retroelements and tandem zinc finger genes
    • Thomas JH, Schneider S. Coevolution of retroelements and tandem zinc finger genes. Genome Res. 2011;21(11):1800-12. doi:10.1101/gr.121749.111.
    • (2011) Genome Res. , vol.21 , Issue.11 , pp. 1800-1812
    • Thomas, J.H.1    Schneider, S.2
  • 65
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, et al. Initial sequencing and analysis of the human genome. Nature. 2001;409(6822):860-921. doi:10.1038/35057062.
    • (2001) Nature , vol.409 , Issue.6822 , pp. 860-921
    • Lander, E.S.1    Linton, L.M.2    Birren, B.3    Nusbaum, C.4    Zody, M.C.5    Baldwin, J.6
  • 66
    • 84858429240 scopus 로고    scopus 로고
    • Endogenous viruses: Insights into viral evolution and impact on host biology
    • Feschotte C, Gilbert C. Endogenous viruses: insights into viral evolution and impact on host biology. Nat Rev Genet. 2012;13(4):283-96. doi:10.1038/nrg3199.
    • (2012) Nat Rev Genet. , vol.13 , Issue.4 , pp. 283-296
    • Feschotte, C.1    Gilbert, C.2
  • 67
    • 84876799419 scopus 로고    scopus 로고
    • Transposable elements as genetic regulatory substrates in early development
    • Gifford WD, Pfaff SL, Macfarlan TS. Transposable elements as genetic regulatory substrates in early development. Trends Cell Biol. 2013;23(5):218-26. doi:10.1016/j.tcb.2013.01.001.
    • (2013) Trends Cell Biol. , vol.23 , Issue.5 , pp. 218-226
    • Gifford, W.D.1    Pfaff, S.L.2    Macfarlan, T.S.3
  • 68
    • 84863458292 scopus 로고    scopus 로고
    • Embryonic stem cell potency fluctuates with endogenous retrovirus activity
    • Macfarlan TS, Gifford WD, Driscoll S, Lettieri K, Rowe HM, Bonanomi D, et al. Embryonic stem cell potency fluctuates with endogenous retrovirus activity. Nature. 2012;487(7405):57-63. doi:10.1038/nature11244.
    • (2012) Nature , vol.487 , Issue.7405 , pp. 57-63
    • Macfarlan, T.S.1    Gifford, W.D.2    Driscoll, S.3    Lettieri, K.4    Rowe, H.M.5    Bonanomi, D.6
  • 69
    • 84874663519 scopus 로고    scopus 로고
    • Endogenous retroviruses function as species-specific enhancer elements in the placenta
    • Chuong EB, Rumi MA, Soares MJ, Baker JC. Endogenous retroviruses function as species-specific enhancer elements in the placenta. Nat Genet. 2013;45(3):325-9. doi:10.1038/ng.2553.
    • (2013) Nat Genet. , vol.45 , Issue.3 , pp. 325-329
    • Chuong, E.B.1    Rumi, M.A.2    Soares, M.J.3    Baker, J.C.4
  • 70
    • 84930227422 scopus 로고    scopus 로고
    • Intrinsic retroviral reactivation in human preimplantation embryos and pluripotent cells
    • Grow EJ, Flynn RA, Chavez SL, Bayless NL, Wossidlo M, Wesche DJ, et al. Intrinsic retroviral reactivation in human preimplantation embryos and pluripotent cells. Nature. 2015. doi:10.1038/nature14308.
    • (2015) Nature
    • Grow, E.J.1    Flynn, R.A.2    Chavez, S.L.3    Bayless, N.L.4    Wossidlo, M.5    Wesche, D.J.6
  • 71
    • 84906663724 scopus 로고    scopus 로고
    • Dynamic regulation of human endogenous retroviruses mediates factorinduced reprogramming and differentiation potential
    • Ohnuki M, Tanabe K, Sutou K, Teramoto I, Sawamura Y, Narita M, et al. Dynamic regulation of human endogenous retroviruses mediates factorinduced reprogramming and differentiation potential. Proc Natl Acad Sci U S A. 2014;111(34):12426-31. doi:10.1073/pnas.1413299111.
    • (2014) Proc Natl Acad Sci U S A , vol.111 , Issue.34 , pp. 12426-12431
    • Ohnuki, M.1    Tanabe, K.2    Sutou, K.3    Teramoto, I.4    Sawamura, Y.5    Narita, M.6
  • 72
    • 34249937354 scopus 로고    scopus 로고
    • Thousands of human mobile element fragments undergo strong purifying selection near developmental genes
    • Lowe CB, Bejerano G, Haussler D. Thousands of human mobile element fragments undergo strong purifying selection near developmental genes. Proc Natl Acad Sci U S A. 2007;104(19):8005-10. doi:10.1073/pnas.0611223104.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , Issue.19 , pp. 8005-8010
    • Lowe, C.B.1    Bejerano, G.2    Haussler, D.3
  • 73
    • 47049101151 scopus 로고    scopus 로고
    • Retroviral promoters in the human genome
    • Conley AB, Piriyapongsa J, Jordan IK. Retroviral promoters in the human genome. Bioinformatics. 2008;24(14):1563-7. doi:10.1093/bioinformatics/btn243.
    • (2008) Bioinformatics , vol.24 , Issue.14 , pp. 1563-1567
    • Conley, A.B.1    Piriyapongsa, J.2    Jordan, I.K.3
  • 76
    • 70349318211 scopus 로고    scopus 로고
    • The impact of retrotransposons on human genome evolution
    • Cordaux R, Batzer MA. The impact of retrotransposons on human genome evolution. Nat Rev Genet. 2009;10(10):691-703. doi:10.1038/nrg2640.
    • (2009) Nat Rev Genet. , vol.10 , Issue.10 , pp. 691-703
    • Cordaux, R.1    Batzer, M.A.2
  • 77
    • 77952190003 scopus 로고    scopus 로고
    • Derepression of an endogenous long terminal repeat activates the CSF1R proto-oncogene in human lymphoma
    • 1p following 9
    • Lamprecht B, Walter K, Kreher S, Kumar R, Hummel M, Lenze D, et al. Derepression of an endogenous long terminal repeat activates the CSF1R proto-oncogene in human lymphoma. Nat Med. 2010;16(5):571-9. doi:10.1038/nm.2129. 1p following 9.
    • (2010) Nat Med. , vol.16 , Issue.5 , pp. 571-579
    • Lamprecht, B.1    Walter, K.2    Kreher, S.3    Kumar, R.4    Hummel, M.5    Lenze, D.6
  • 78
    • 84896703728 scopus 로고    scopus 로고
    • Endogenous retroviruses and the development of cancer
    • Kassiotis G. Endogenous retroviruses and the development of cancer. J Immunol. 2014;192(4):1343-9. doi:10.4049/jimmunol.1302972.
    • (2014) J Immunol. , vol.192 , Issue.4 , pp. 1343-1349
    • Kassiotis, G.1
  • 79
    • 84891121699 scopus 로고    scopus 로고
    • Association of endogenous retroviruses and long terminal repeats with human disorders
    • Katoh I, Kurata S. Association of endogenous retroviruses and long terminal repeats with human disorders. Frontiers Oncol. 2013;3:234. doi:10.3389/fonc.2013.00234.
    • (2013) Frontiers Oncol. , vol.3 , pp. 234
    • Katoh, I.1    Kurata, S.2
  • 80
    • 84904871470 scopus 로고    scopus 로고
    • Regulation of the human endogenous retrovirus K (HML-2) transcriptome by the HIV-1 Tat protein
    • Gonzalez-Hernandez MJ, Cavalcoli JD, Sartor MA, Contreras-Galindo R, Meng F, Dai M, et al. Regulation of the human endogenous retrovirus K (HML-2) transcriptome by the HIV-1 Tat protein. J Virol. 2014;88(16):8924-35. doi:10.1128/JVI.00556-14.
    • (2014) J Virol. , vol.88 , Issue.16 , pp. 8924-8935
    • Gonzalez-Hernandez, M.J.1    Cavalcoli, J.D.2    Sartor, M.A.3    Contreras-Galindo, R.4    Meng, F.5    Dai, M.6
  • 81
    • 84899866389 scopus 로고    scopus 로고
    • HIV-1 interacts with human endogenous retrovirus K (HML-2) envelopes derived from human primary lymphocytes
    • Brinzevich D, Young GR, Sebra R, Ayllon J, Maio SM, Deikus G, et al. HIV-1 interacts with human endogenous retrovirus K (HML-2) envelopes derived from human primary lymphocytes. J Virol. 2014;88(11):6213-23. doi:10.1128/JVI.00669-14.
    • (2014) J Virol. , vol.88 , Issue.11 , pp. 6213-6223
    • Brinzevich, D.1    Young, G.R.2    Sebra, R.3    Ayllon, J.4    Maio, S.M.5    Deikus, G.6
  • 82
    • 84893416710 scopus 로고    scopus 로고
    • Trans-activation, post-transcriptional maturation, and induction of antibodies to HERV-K (HML-2) envelope transmembrane protein in HIV-1 infection
    • Michaud HA, de Mulder M, SenGupta D, Deeks SG, Martin JN, Pilcher CD, et al. Trans-activation, post-transcriptional maturation, and induction of antibodies to HERV-K (HML-2) envelope transmembrane protein in HIV-1 infection. Retrovirology. 2014;11:10. doi:10.1186/1742-4690-11-10.
    • (2014) Retrovirology , vol.11 , pp. 10
    • Michaud, H.A.1    De Mulder, M.2    SenGupta, D.3    Deeks, S.G.4    Martin, J.N.5    Pilcher, C.D.6
  • 83
    • 84873481763 scopus 로고    scopus 로고
    • Endogenous retrovirus-K promoter: A landing strip for inflammatory transcription factors?
    • Manghera M, Douville RN. Endogenous retrovirus-K promoter: a landing strip for inflammatory transcription factors? Retrovirology. 2013;10:16. doi:10.1186/1742-4690-10-16.
    • (2013) Retrovirology , vol.10 , pp. 16
    • Manghera, M.1    Douville, R.N.2
  • 84
    • 84907479607 scopus 로고    scopus 로고
    • Repetitive elements dynamics in cell identity programming, maintenance and disease
    • Bodega B, Orlando V. Repetitive elements dynamics in cell identity programming, maintenance and disease. Curr Opin Cell Biol. 2014;31:67-73. doi:10.1016/j.ceb.2014.09.002.
    • (2014) Curr Opin Cell Biol. , vol.31 , pp. 67-73
    • Bodega, B.1    Orlando, V.2
  • 86
    • 84887107288 scopus 로고    scopus 로고
    • The role of transposable elements in health and diseases of the central nervous system
    • Reilly MT, Faulkner GJ, Dubnau J, Ponomarev I, Gage FH. The role of transposable elements in health and diseases of the central nervous system. J Neurosci. 2013;33(45):17577-86. doi:10.1523/JNEUROSCI.3369-13.2013.
    • (2013) J Neurosci. , vol.33 , Issue.45 , pp. 17577-17586
    • Reilly, M.T.1    Faulkner, G.J.2    Dubnau, J.3    Ponomarev, I.4    Gage, F.H.5
  • 87
    • 84862507347 scopus 로고    scopus 로고
    • Active human retrotransposons: Variation and disease
    • Hancks DC, Kazazian Jr HH. Active human retrotransposons: variation and disease. Curr Opin Genet Dev. 2012;22(3):191-203. doi:10.1016/j.gde.2012.02.006.
    • (2012) Curr Opin Genet Dev. , vol.22 , Issue.3 , pp. 191-203
    • Hancks, D.C.1    Kazazian, H.H.2
  • 88
    • 77953081850 scopus 로고    scopus 로고
    • A LINE-1 component to human aging: Do LINE elements exact a longevity cost for evolutionary advantage?
    • St Laurent 3rd G, Hammell N, McCaffrey TA. A LINE-1 component to human aging: do LINE elements exact a longevity cost for evolutionary advantage? Mech Ageing Dev. 2010;131(5):299-305. doi:10.1016/j.mad.2010.03.008.
    • (2010) Mech Ageing Dev. , vol.131 , Issue.5 , pp. 299-305
    • St-Laurent, G.1    Hammell, N.2    McCaffrey, T.A.3
  • 89
    • 80054684150 scopus 로고    scopus 로고
    • Endogenous APOBEC3B restricts LINE-1 retrotransposition in transformed cells and human embryonic stem cells
    • Wissing S, Montano M, Garcia-Perez JL, Moran JV, Greene WC. Endogenous APOBEC3B restricts LINE-1 retrotransposition in transformed cells and human embryonic stem cells. J Biol Chem. 2011;286(42):36427-37. doi:10.1074/jbc.M111.251058.
    • (2011) J Biol Chem. , vol.286 , Issue.42 , pp. 36427-36437
    • Wissing, S.1    Montano, M.2    Garcia-Perez, J.L.3    Moran, J.V.4    Greene, W.C.5
  • 90
    • 34248160438 scopus 로고    scopus 로고
    • Developmentally regulated piRNA clusters implicate MILI in transposon control
    • Aravin AA, Sachidanandam R, Girard A, Fejes-Toth K, Hannon GJ. Developmentally regulated piRNA clusters implicate MILI in transposon control. Science. 2007;316(5825):744-7. doi:10.1126/science.1142612.
    • (2007) Science , vol.316 , Issue.5825 , pp. 744-747
    • Aravin, A.A.1    Sachidanandam, R.2    Girard, A.3    Fejes-Toth, K.4    Hannon, G.J.5
  • 91
    • 84899112356 scopus 로고    scopus 로고
    • The enemy within: Endogenous retroelements and autoimmune disease
    • Volkman HE, Stetson DB. The enemy within: endogenous retroelements and autoimmune disease. Nat Immunol. 2014;15(5):415-22. doi:10.1038/ni.2872.
    • (2014) Nat Immunol. , vol.15 , Issue.5 , pp. 415-422
    • Volkman, H.E.1    Stetson, D.B.2
  • 92
    • 84858412556 scopus 로고    scopus 로고
    • Silencing of endogenous retroviruses: When and why do histone marks predominate?
    • Leung DC, Lorincz MC. Silencing of endogenous retroviruses: when and why do histone marks predominate? Trends Biochem Sci. 2012;37(4):127-33. doi:10.1016/j.tibs.2011.11.006.
    • (2012) Trends Biochem Sci. , vol.37 , Issue.4 , pp. 127-133
    • Leung, D.C.1    Lorincz, M.C.2
  • 93
    • 58549083988 scopus 로고    scopus 로고
    • Host restriction factors blocking retroviral replication
    • Wolf D, Goff SP. Host restriction factors blocking retroviral replication. Annu Rev Genet. 2008;42:143-63. doi:10.1146/annurev.genet.42.110807.091704.
    • (2008) Annu Rev Genet. , vol.42 , pp. 143-163
    • Wolf, D.1    Goff, S.P.2
  • 94
    • 84876256909 scopus 로고    scopus 로고
    • Epigenetic marking and repression of porcine endogenous retroviruses
    • Wolf G, Nielsen AL, Mikkelsen JG, Pedersen FS. Epigenetic marking and repression of porcine endogenous retroviruses. J Gen Virol. 2013;94(Pt 5):960-70. doi:10.1099/vir.0.049288-0.
    • (2013) J Gen Virol. , vol.94 , pp. 960-970
    • Wolf, G.1    Nielsen, A.L.2    Mikkelsen, J.G.3    Pedersen, F.S.4
  • 95
    • 0030840954 scopus 로고    scopus 로고
    • Cytosine methylation and the ecology of intragenomic parasites
    • Yoder JA, Walsh CP, Bestor TH. Cytosine methylation and the ecology of intragenomic parasites. Trends Genet. 1997;13(8):335-40.
    • (1997) Trends Genet. , vol.13 , Issue.8 , pp. 335-340
    • Yoder, J.A.1    Walsh, C.P.2    Bestor, T.H.3
  • 96
    • 0001408994 scopus 로고
    • Treatment of mice with 5-azacytidine efficiently activates silent retroviral genomes in different tissues
    • Jaenisch R, Schnieke A, Harbers K. Treatment of mice with 5-azacytidine efficiently activates silent retroviral genomes in different tissues. Proc Natl Acad Sci U S A. 1985;82(5):1451-5.
    • (1985) Proc Natl Acad Sci U S A , vol.82 , Issue.5 , pp. 1451-1455
    • Jaenisch, R.1    Schnieke, A.2    Harbers, K.3
  • 97
    • 0031662164 scopus 로고    scopus 로고
    • Transcription of IAP endogenous retroviruses is constrained by cytosine methylation
    • Walsh CP, Chaillet JR, Bestor TH. Transcription of IAP endogenous retroviruses is constrained by cytosine methylation. Nat Genet. 1998;20(2):116-7. doi:10.1038/2413.
    • (1998) Nat Genet. , vol.20 , Issue.2 , pp. 116-117
    • Walsh, C.P.1    Chaillet, J.R.2    Bestor, T.H.3
  • 98
    • 34547624303 scopus 로고    scopus 로고
    • Genome-wide maps of chromatin state in pluripotent and lineagecommitted cells
    • Mikkelsen TS, Ku M, Jaffe DB, Issac B, Lieberman E, Giannoukos G, et al. Genome-wide maps of chromatin state in pluripotent and lineagecommitted cells. Nature. 2007;448(7153):553-60. doi:10.1038/nature06008.
    • (2007) Nature , vol.448 , Issue.7153 , pp. 553-560
    • Mikkelsen, T.S.1    Ku, M.2    Jaffe, D.B.3    Issac, B.4    Lieberman, E.5    Giannoukos, G.6
  • 99
    • 79957844585 scopus 로고    scopus 로고
    • DNA methylation and SETDB1/H3K9me3 regulate predominantly distinct sets of genes, retroelements, and chimeric transcripts in mESCs
    • Karimi MM, Goyal P, Maksakova IA, Bilenky M, Leung D, Tang JX, et al. DNA methylation and SETDB1/H3K9me3 regulate predominantly distinct sets of genes, retroelements, and chimeric transcripts in mESCs. Cell Stem Cell. 2011;8(6):676-87.
    • (2011) Cell Stem Cell. , vol.8 , Issue.6 , pp. 676-687
    • Karimi, M.M.1    Goyal, P.2    Maksakova, I.A.3    Bilenky, M.4    Leung, D.5    Tang, J.X.6
  • 100
    • 77950862656 scopus 로고    scopus 로고
    • Proviral silencing in embryonic stem cells requires the histone methyltransferase ESET
    • Matsui T, Leung D, Miyashita H, Maksakova IA, Miyachi H, Kimura H, et al. Proviral silencing in embryonic stem cells requires the histone methyltransferase ESET. Nature. 2010;464(7290):927-31. doi:10.1038/nature08858.
    • (2010) Nature , vol.464 , Issue.7290 , pp. 927-931
    • Matsui, T.1    Leung, D.2    Miyashita, H.3    Maksakova, I.A.4    Miyachi, H.5    Kimura, H.6
  • 101
    • 79952100303 scopus 로고    scopus 로고
    • Dynamic control of endogenous retroviruses during development
    • Rowe HM, Trono D. Dynamic control of endogenous retroviruses during development. Virology. 2011;411(2):273-87. doi:10.1016/j.virol.2010.12.007.
    • (2011) Virology , vol.411 , Issue.2 , pp. 273-287
    • Rowe, H.M.1    Trono, D.2
  • 102
    • 78149476037 scopus 로고    scopus 로고
    • Small RNA-mediated quiescence of transposable elements in animals
    • Saito K, Siomi MC. Small RNA-mediated quiescence of transposable elements in animals. Dev Cell. 2010;19(5):687-97. doi:10.1016/j.devcel.2010.10.011.
    • (2010) Dev Cell. , vol.19 , Issue.5 , pp. 687-697
    • Saito, K.1    Siomi, M.C.2
  • 103
    • 84872958560 scopus 로고    scopus 로고
    • RNAi triggered by specialized machinery silences developmental genes and retrotransposons
    • Yamanaka S, Mehta S, Reyes-Turcu FE, Zhuang F, Fuchs RT, Rong Y, et al. RNAi triggered by specialized machinery silences developmental genes and retrotransposons. Nature. 2013;493(7433):557-60. doi:10.1038/nature11716.
    • (2013) Nature , vol.493 , Issue.7433 , pp. 557-560
    • Yamanaka, S.1    Mehta, S.2    Reyes-Turcu, F.E.3    Zhuang, F.4    Fuchs, R.T.5    Rong, Y.6
  • 104
    • 77249170184 scopus 로고    scopus 로고
    • Establishing, maintaining and modifying DNA methylation patterns in plants and animals
    • Law JA, Jacobsen SE. Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat Rev Genet. 2010;11(3):204-20. doi:10.1038/nrg2719.
    • (2010) Nat Rev Genet. , vol.11 , Issue.3 , pp. 204-220
    • Law, J.A.1    Jacobsen, S.E.2
  • 105
    • 84890855567 scopus 로고    scopus 로고
    • Recognizing the enemy within: Licensing RNAguided genome defense
    • Dumesic PA, Madhani HD. Recognizing the enemy within: licensing RNAguided genome defense. Trends Biochem Sci. 2014;39(1):25-34. doi:10.1016/j.tibs.2013.10.003.
    • (2014) Trends Biochem Sci. , vol.39 , Issue.1 , pp. 25-34
    • Dumesic, P.A.1    Madhani, H.D.2
  • 106
    • 84888642291 scopus 로고    scopus 로고
    • Differential L1 regulation in pluripotent stem cells of humans and apes
    • Marchetto MC, Narvaiza I, Denli AM, Benner C, Lazzarini TA, Nathanson JL, et al. Differential L1 regulation in pluripotent stem cells of humans and apes. Nature. 2013;503(7477):525-9. doi:10.1038/nature12686.
    • (2013) Nature , vol.503 , Issue.7477 , pp. 525-529
    • Marchetto, M.C.1    Narvaiza, I.2    Denli, A.M.3    Benner, C.4    Lazzarini, T.A.5    Nathanson, J.L.6
  • 107
    • 33947720638 scopus 로고    scopus 로고
    • MIWI2 is essential for spermatogenesis and repression of transposons in the mouse male germline
    • Carmell MA, Girard A, van de Kant HJ, Bourc'his D, Bestor TH, de Rooij DG, et al. MIWI2 is essential for spermatogenesis and repression of transposons in the mouse male germline. Dev Cell. 2007;12(4):503-14. doi:10.1016/j.devcel.2007.03.001.
    • (2007) Dev Cell. , vol.12 , Issue.4 , pp. 503-514
    • Carmell, M.A.1    Girard, A.2    Van De-Kant, H.J.3    Bourc'His, D.4    Bestor, T.H.5    De Rooij, D.G.6
  • 108
    • 83055180736 scopus 로고    scopus 로고
    • The endonuclease activity of Mili fuels piRNA amplification that silences LINE1 elements
    • De Fazio S, Bartonicek N, Di Giacomo M, Abreu-Goodger C, Sankar A, Funaya C, et al. The endonuclease activity of Mili fuels piRNA amplification that silences LINE1 elements. Nature. 2011;480(7376):259-63. doi:10.1038/nature10547.
    • (2011) Nature , vol.480 , Issue.7376 , pp. 259-263
    • De Fazio, S.1    Bartonicek, N.2    Di Giacomo, M.3    Abreu-Goodger, C.4    Sankar, A.5    Funaya, C.6
  • 109
    • 0023007610 scopus 로고
    • Chromosomal position or virus mutation permits retrovirus expression in embryonal carcinoma cells
    • Barklis E, Mulligan RC, Jaenisch R. Chromosomal position or virus mutation permits retrovirus expression in embryonal carcinoma cells. Cell. 1986;47(3):391-9.
    • (1986) Cell , vol.47 , Issue.3 , pp. 391-399
    • Barklis, E.1    Mulligan, R.C.2    Jaenisch, R.3
  • 110
    • 0023429034 scopus 로고
    • Proviral sequences that restrict retroviral expression in mouse embryonal carcinoma cells
    • Loh TP, Sievert LL, Scott RW. Proviral sequences that restrict retroviral expression in mouse embryonal carcinoma cells. Mol Cell Biol. 1987;7(10):3775-84.
    • (1987) Mol Cell Biol. , vol.7 , Issue.10 , pp. 3775-3784
    • Loh, T.P.1    Sievert, L.L.2    Scott, R.W.3
  • 111
    • 34848819391 scopus 로고    scopus 로고
    • TRIM28 mediates primer binding site-targeted silencing of murine leukemia virus in embryonic cells
    • Wolf D, Goff SP. TRIM28 mediates primer binding site-targeted silencing of murine leukemia virus in embryonic cells. Cell. 2007;131(1):46-57. doi:10.1016/j.cell.2007.07.026.
    • (2007) Cell , vol.131 , Issue.1 , pp. 46-57
    • Wolf, D.1    Goff, S.P.2
  • 112
    • 67349170854 scopus 로고    scopus 로고
    • Embryonic stem cells use ZFP809 to silence retroviral DNAs
    • Wolf D, Goff SP. Embryonic stem cells use ZFP809 to silence retroviral DNAs. Nature. 2009;458(7242):1201-4. doi:10.1038/nature07844.
    • (2009) Nature , vol.458 , Issue.7242 , pp. 1201-1204
    • Wolf, D.1    Goff, S.P.2
  • 113
    • 74549116659 scopus 로고    scopus 로고
    • KAP1 controls endogenous retroviruses in embryonic stem cells
    • Rowe HM, Jakobsson J, Mesnard D, Rougemont J, Reynard S, Aktas T, et al. KAP1 controls endogenous retroviruses in embryonic stem cells. Nature. 2010;463(7278):237-40. doi:10.1038/nature08674.
    • (2010) Nature , vol.463 , Issue.7278 , pp. 237-240
    • Rowe, H.M.1    Jakobsson, J.2    Mesnard, D.3    Rougemont, J.4    Reynard, S.5    Aktas, T.6
  • 114
    • 84920923006 scopus 로고    scopus 로고
    • TRIM28 represses transcription of endogenous retroviruses in neural progenitor cells
    • Fasching L, Kapopoulou A, Sachdeva R, Petri R, Jonsson ME, Manne C, et al. TRIM28 represses transcription of endogenous retroviruses in neural progenitor cells. Cell reports. 2015;10(1):20-8. doi:10.1016/j.celrep.2014.12.004.
    • (2015) Cell Reports , vol.10 , Issue.1 , pp. 20-28
    • Fasching, L.1    Kapopoulou, A.2    Sachdeva, R.3    Petri, R.4    Jonsson, M.E.5    Manne, C.6
  • 115
    • 84936889694 scopus 로고    scopus 로고
    • The histone methyltransferase SETDB1 represses endogenous and exogenous retroviruses in B lymphocytes
    • Collins PL, Kyle KE, Egawa T, Shinkai Y, Oltz EM. The histone methyltransferase SETDB1 represses endogenous and exogenous retroviruses in B lymphocytes. Proc Natl Acad Sci U S A. 2015;112(27):8367-72. doi:10.1073/pnas.1422187112.
    • (2015) Proc Natl Acad Sci U S A , vol.112 , Issue.27 , pp. 8367-8372
    • Collins, P.L.1    Kyle, K.E.2    Egawa, T.3    Shinkai, Y.4    Oltz, E.M.5
  • 116
    • 84882800012 scopus 로고    scopus 로고
    • Zfp819, a novel KRAB-zinc finger protein, interacts with KAP1 and functions in genomic integrity maintenance of mouse embryonic stem cells
    • Tan X, Xu X, Elkenani M, Smorag L, Zechner U, Nolte J, et al. Zfp819, a novel KRAB-zinc finger protein, interacts with KAP1 and functions in genomic integrity maintenance of mouse embryonic stem cells. Stem Cell Res. 2013;11(3):1045-59. doi:10.1016/j.scr.2013.07.006.
    • (2013) Stem Cell Res. , vol.11 , Issue.3 , pp. 1045-1059
    • Tan, X.1    Xu, X.2    Elkenani, M.3    Smorag, L.4    Zechner, U.5    Nolte, J.6
  • 117
    • 0037452693 scopus 로고    scopus 로고
    • Repression of the HIV-1 5′ LTR promoter and inhibition of HIV-1 replication by using engineered zinc-finger transcription factors
    • Reynolds L, Ullman C, Moore M, Isalan M, West MJ, Clapham P, et al. Repression of the HIV-1 5′ LTR promoter and inhibition of HIV-1 replication by using engineered zinc-finger transcription factors. Proc Natl Acad Sci U S A. 2003;100(4):1615-20. doi:10.1073/pnas.252770699.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , Issue.4 , pp. 1615-1620
    • Reynolds, L.1    Ullman, C.2    Moore, M.3    Isalan, M.4    West, M.J.5    Clapham, P.6
  • 118
    • 2442536906 scopus 로고    scopus 로고
    • Attenuation of HIV-1 replication in primary human cells with a designed zinc finger transcription factor
    • Segal DJ, Goncalves J, Eberhardy S, Swan CH, Torbett BE, Li X, et al. Attenuation of HIV-1 replication in primary human cells with a designed zinc finger transcription factor. J Biol Chem. 2004;279(15):14509-19. doi:10.1074/jbc.M400349200.
    • (2004) J Biol Chem. , vol.279 , Issue.15 , pp. 14509-14519
    • Segal, D.J.1    Goncalves, J.2    Eberhardy, S.3    Swan, C.H.4    Torbett, B.E.5    Li, X.6
  • 119
    • 33644774584 scopus 로고    scopus 로고
    • Inhibition of human immunodeficiency virus type 1 replication with artificial transcription factors targeting the highly conserved primer-binding site
    • Eberhardy SR, Goncalves J, Coelho S, Segal DJ, Berkhout B, Barbas 3rd CF. Inhibition of human immunodeficiency virus type 1 replication with artificial transcription factors targeting the highly conserved primer-binding site. J Virol. 2006;80(6):2873-83. doi:10.1128/JVI.80.6.2873-2883.2006.
    • (2006) J Virol. , vol.80 , Issue.6 , pp. 2873-2883
    • Eberhardy, S.R.1    Goncalves, J.2    Coelho, S.3    Segal, D.J.4    Berkhout, B.5    Barbas, C.F.6
  • 120
    • 0346103723 scopus 로고    scopus 로고
    • Molecular characterization of a putative antiretroviral transcriptional factor, OTK18
    • Carlson KA, Leisman G, Limoges J, Pohlman GD, Horiba M, Buescher J, et al. Molecular characterization of a putative antiretroviral transcriptional factor, OTK18. J Immunol. 2004;172(1):381-91.
    • (2004) J Immunol. , vol.172 , Issue.1 , pp. 381-391
    • Carlson, K.A.1    Leisman, G.2    Limoges, J.3    Pohlman, G.D.4    Horiba, M.5    Buescher, J.6
  • 121
    • 33846165427 scopus 로고    scopus 로고
    • OTK18, a zinc-finger protein, regulates human immunodeficiency virus type 1 long terminal repeat through two distinct regulatory regions
    • Horiba M, Martinez LB, Buescher JL, Sato S, Limoges J, Jiang Y, et al. OTK18, a zinc-finger protein, regulates human immunodeficiency virus type 1 long terminal repeat through two distinct regulatory regions. J Gen Virol. 2007;88(Pt 1):236-41. doi:10.1099/vir.0.82066-0.
    • (2007) J Gen Virol. , vol.88 , pp. 236-241
    • Horiba, M.1    Martinez, L.B.2    Buescher, J.L.3    Sato, S.4    Limoges, J.5    Jiang, Y.6
  • 122
    • 84867572993 scopus 로고    scopus 로고
    • ZBRK1 represses HIV-1 LTR-mediated transcription
    • Nishitsuji H, Abe M, Sawada R, Takaku H. ZBRK1 represses HIV-1 LTR-mediated transcription. FEBS Lett. 2012;586(20):3562-8. doi:10.1016/j.febslet.2012.08.010.
    • (2012) FEBS Lett. , vol.586 , Issue.20 , pp. 3562-3568
    • Nishitsuji, H.1    Abe, M.2    Sawada, R.3    Takaku, H.4
  • 123
    • 84934443560 scopus 로고    scopus 로고
    • ZNF10 inhibits HIV-1 LTR activity through interaction with NF-kappaB and Sp1 binding motifs
    • Nishitsuji H, Sawada L, Sugiyama R, Takaku H. ZNF10 inhibits HIV-1 LTR activity through interaction with NF-kappaB and Sp1 binding motifs. FEBS Lett. 2015;589(15):2019-25. doi:10.1016/j.febslet.2015.06.013.
    • (2015) FEBS Lett. , vol.589 , Issue.15 , pp. 2019-2025
    • Nishitsuji, H.1    Sawada, L.2    Sugiyama, R.3    Takaku, H.4
  • 124
    • 58149500187 scopus 로고    scopus 로고
    • A transitional endogenous lentivirus from the genome of a basal primate and implications for lentivirus evolution
    • Gifford RJ, Katzourakis A, Tristem M, Pybus OG, Winters M, Shafer RW. A transitional endogenous lentivirus from the genome of a basal primate and implications for lentivirus evolution. Proc Natl Acad Sci U S A. 2008;105(51):20362-7. doi:10.1073/pnas.0807873105.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , Issue.51 , pp. 20362-20367
    • Gifford, R.J.1    Katzourakis, A.2    Tristem, M.3    Pybus, O.G.4    Winters, M.5    Shafer, R.W.6
  • 126
    • 84922287454 scopus 로고    scopus 로고
    • Origin and prevalence of human T-lymphotropic virus type 1 (HTLV-1) and type 2 (HTLV-2) among indigenous populations in the Americas
    • Paiva A, Casseb J. Origin and prevalence of human T-lymphotropic virus type 1 (HTLV-1) and type 2 (HTLV-2) among indigenous populations in the Americas. Rev Inst Med Trop Sao Paulo. 2015;57(1):1-13. doi:10.1590/S0036-46652015000100001.
    • (2015) Rev Inst Med Trop Sao Paulo. , vol.57 , Issue.1 , pp. 1-13
    • Paiva, A.1    Casseb, J.2
  • 127
    • 79960829335 scopus 로고    scopus 로고
    • HTLV-3/STLV-3 and HTLV-4 viruses: Discovery, epidemiology, serology and molecular aspects
    • Mahieux R, Gessain A. HTLV-3/STLV-3 and HTLV-4 viruses: discovery, epidemiology, serology and molecular aspects. Viruses. 2011;3(7):1074-90. doi:10.3390/v3071074.
    • (2011) Viruses , vol.3 , Issue.7 , pp. 1074-1090
    • Mahieux, R.1    Gessain, A.2
  • 128
    • 55849085023 scopus 로고    scopus 로고
    • OTK18 levels in plasma and cerebrospinal fluid correlate with viral load and CD8 T-cells in normal and AIDS patients
    • Buescher JL, Duan F, Sun J, Price RW, Ikezu T. OTK18 levels in plasma and cerebrospinal fluid correlate with viral load and CD8 T-cells in normal and AIDS patients. J Neuroimmune Pharmacol. 2008;3(4):230-5. doi:10.1007/s11481-008-9125-3.
    • (2008) J Neuroimmune Pharmacol. , vol.3 , Issue.4 , pp. 230-235
    • Buescher, J.L.1    Duan, F.2    Sun, J.3    Price, R.W.4    Ikezu, T.5
  • 129
    • 1842687445 scopus 로고    scopus 로고
    • OTK18 expression in brain mononuclear phagocytes parallels the severity of HIV-1 encephalitis
    • Carlson KA, Limoges J, Pohlman GD, Poluektova LY, Langford D, Masliah E, et al. OTK18 expression in brain mononuclear phagocytes parallels the severity of HIV-1 encephalitis. J Neuroimmunol. 2004;150(1-2):186-98. doi:10.1016/j.jneuroim.2004.01.021.
    • (2004) J Neuroimmunol. , vol.150 , Issue.1-2 , pp. 186-198
    • Carlson, K.A.1    Limoges, J.2    Pohlman, G.D.3    Poluektova, L.Y.4    Langford, D.5    Masliah, E.6
  • 130
    • 0141864358 scopus 로고    scopus 로고
    • Degradation of transcription repressor ZBRK1 through the ubiquitin-proteasome pathway relieves repression of Gadd45a upon DNA damage
    • Yun J, Lee WH. Degradation of transcription repressor ZBRK1 through the ubiquitin-proteasome pathway relieves repression of Gadd45a upon DNA damage. Mol Cell Biol. 2003;23(20):7305-14.
    • (2003) Mol Cell Biol. , vol.23 , Issue.20 , pp. 7305-7314
    • Yun, J.1    Lee, W.H.2
  • 131
    • 33847270257 scopus 로고    scopus 로고
    • Doxorubicin down-regulates Kruppel-associated box domain-associated protein 1 sumoylation that relieves its transcription repression on p21WAF1/CIP1 in breast cancer MCF-7 cells
    • Lee YK, Thomas SN, Yang AJ, Ann DK. Doxorubicin down-regulates Kruppel-associated box domain-associated protein 1 sumoylation that relieves its transcription repression on p21WAF1/CIP1 in breast cancer MCF-7 cells. J Biol Chem. 2007;282(3):1595-606. doi:10.1074/jbc.M606306200.
    • (2007) J Biol Chem. , vol.282 , Issue.3 , pp. 1595-1606
    • Lee, Y.K.1    Thomas, S.N.2    Yang, A.J.3    Ann, D.K.4
  • 132
    • 33745713176 scopus 로고    scopus 로고
    • Removal of BRCA1/CtIP/ZBRK1 repressor complex on ANG1 promoter leads to accelerated mammary tumor growth contributed by prominent vasculature
    • Furuta S, Wang JM, Wei S, Jeng YM, Jiang X, Gu B, et al. Removal of BRCA1/CtIP/ZBRK1 repressor complex on ANG1 promoter leads to accelerated mammary tumor growth contributed by prominent vasculature. Cancer Cell. 2006;10(1):13-24. doi:10.1016/j.ccr.2006.05.022.
    • (2006) Cancer Cell. , vol.10 , Issue.1 , pp. 13-24
    • Furuta, S.1    Wang, J.M.2    Wei, S.3    Jeng, Y.M.4    Jiang, X.5    Gu, B.6
  • 133
    • 75149119727 scopus 로고    scopus 로고
    • ZBRK1 acts as a metastatic suppressor by directly regulating MMP9 in cervical cancer
    • Lin LF, Chuang CH, Li CF, Liao CC, Cheng CP, Cheng TL, et al. ZBRK1 acts as a metastatic suppressor by directly regulating MMP9 in cervical cancer. Cancer Res. 2010;70(1):192-201. doi:10.1158/0008-5472.CAN-09-2641.
    • (2010) Cancer Res. , vol.70 , Issue.1 , pp. 192-201
    • Lin, L.F.1    Chuang, C.H.2    Li, C.F.3    Liao, C.C.4    Cheng, C.P.5    Cheng, T.L.6
  • 134
    • 84883488216 scopus 로고    scopus 로고
    • SUMOylation of ZFP282 potentiates its positive effect on estrogen signaling in breast tumorigenesis
    • Yu EJ, Kim SH, Kim MJ, Seo WY, Song KA, Kang MS, et al. SUMOylation of ZFP282 potentiates its positive effect on estrogen signaling in breast tumorigenesis. Oncogene. 2013;32(35):4160-8. doi:10.1038/onc.2012.420.
    • (2013) Oncogene , vol.32 , Issue.35 , pp. 4160-4168
    • Yu, E.J.1    Kim, S.H.2    Kim, M.J.3    Seo, W.Y.4    Song, K.A.5    Kang, M.S.6
  • 135
    • 84920008476 scopus 로고    scopus 로고
    • ZNF282 (Zinc finger protein 282), a novel E2F1 co-activator, promotes esophageal squamous cell carcinoma
    • Yeo SY, Ha SY, Yu EJ, Lee KW, Kim JH, Kim SH. ZNF282 (Zinc finger protein 282), a novel E2F1 co-activator, promotes esophageal squamous cell carcinoma. Oncotarget. 2014;5(23):12260-72.
    • (2014) Oncotarget , vol.5 , Issue.23 , pp. 12260-12272
    • Yeo, S.Y.1    Ha, S.Y.2    Yu, E.J.3    Lee, K.W.4    Kim, J.H.5    Kim, S.H.6
  • 136
    • 67449097123 scopus 로고    scopus 로고
    • The effect of OTK18 upregulation in U937 cells on neuronal survival
    • Gilling CE, Carlson KA. The effect of OTK18 upregulation in U937 cells on neuronal survival. In vitro cellular Developmental biology Animal. 2009;45(5-6):243-51. doi:10.1007/s11626-009-9175-8.
    • (2009) Vitro Cellular Developmental Biology Animal , vol.45 , Issue.5-6 , pp. 243-251
    • Gilling, C.E.1    Carlson, K.A.2
  • 137
    • 0032169012 scopus 로고    scopus 로고
    • A cis-acting element that directs the activity of the murine methylation modifier locus Ssm1
    • Engler P, Doglio LT, Bozek G, Storb U. A cis-acting element that directs the activity of the murine methylation modifier locus Ssm1. Proc Natl Acad Sci U S A. 1998;95(18):10763-8.
    • (1998) Proc Natl Acad Sci U S A , vol.95 , Issue.18 , pp. 10763-10768
    • Engler, P.1    Doglio, L.T.2    Bozek, G.3    Storb, U.4
  • 138
    • 18944390988 scopus 로고    scopus 로고
    • DNA methylation precedes chromatin modifications under the influence of the strain-specific modifier Ssm1
    • Padjen K, Ratnam S, Storb U. DNA methylation precedes chromatin modifications under the influence of the strain-specific modifier Ssm1. Mol Cell Biol. 2005;25(11):4782-91. doi:10.1128/MCB.25.11.4782-4791.2005.
    • (2005) Mol Cell Biol. , vol.25 , Issue.11 , pp. 4782-4791
    • Padjen, K.1    Ratnam, S.2    Storb, U.3
  • 139
    • 84899999712 scopus 로고    scopus 로고
    • Identification of Ssm1b, a novel modifier of DNA methylation, and its expression during mouse embryogenesis
    • Ratnam S, Engler P, Bozek G, Mao L, Podlutsky A, Austad S, et al. Identification of Ssm1b, a novel modifier of DNA methylation, and its expression during mouse embryogenesis. Development. 2014;141(10):2024-34. doi:10.1242/dev.105726.
    • (2014) Development , vol.141 , Issue.10 , pp. 2024-2034
    • Ratnam, S.1    Engler, P.2    Bozek, G.3    Mao, L.4    Podlutsky, A.5    Austad, S.6
  • 140
    • 0029142855 scopus 로고
    • Strain-specific transgene methylation occurs early in mouse development and can be recapitulated in embryonic stem cells
    • Weng A, Magnuson T, Storb U. Strain-specific transgene methylation occurs early in mouse development and can be recapitulated in embryonic stem cells. Development. 1995;121(9):2853-9.
    • (1995) Development , vol.121 , Issue.9 , pp. 2853-2859
    • Weng, A.1    Magnuson, T.2    Storb, U.3
  • 141
    • 84933578221 scopus 로고    scopus 로고
    • Endogenous viruses: Connecting recent and ancient viral evolution
    • Aiewsakun P, Katzourakis A. Endogenous viruses: Connecting recent and ancient viral evolution. Virology. 2015;479-480C:26-37. doi:10.1016/j.virol.2015.02.011.
    • (2015) Virology , vol.479-480 C , pp. 26-37
    • Aiewsakun, P.1    Katzourakis, A.2
  • 142
    • 0036785496 scopus 로고    scopus 로고
    • Drosophila germline invasion by the endogenous retrovirus gypsy: Involvement of the viral env gene
    • Pelisson A, Mejlumian L, Robert V, Terzian C, Bucheton A. Drosophila germline invasion by the endogenous retrovirus gypsy: involvement of the viral env gene. Insect Biochem Mol Biol. 2002;32(10):1249-56.
    • (2002) Insect Biochem Mol Biol. , vol.32 , Issue.10 , pp. 1249-1256
    • Pelisson, A.1    Mejlumian, L.2    Robert, V.3    Terzian, C.4    Bucheton, A.5
  • 143
    • 79952071848 scopus 로고    scopus 로고
    • Cell-to-cell transmission of retroviruses: Innate immunity and interferon-induced restriction factors
    • Jolly C. Cell-to-cell transmission of retroviruses: Innate immunity and interferon-induced restriction factors. Virology. 2011;411(2):251-9. doi:10.1016/j.virol.2010.12.031.
    • (2011) Virology , vol.411 , Issue.2 , pp. 251-259
    • Jolly, C.1
  • 144
    • 72849115174 scopus 로고    scopus 로고
    • Origin and evolution of the adaptive immune system: Genetic events and selective pressures
    • Flajnik MF, Kasahara M. Origin and evolution of the adaptive immune system: genetic events and selective pressures. Nat Rev Genet. 2010;11(1):47-59. doi:10.1038/nrg2703.
    • (2010) Nat Rev Genet. , vol.11 , Issue.1 , pp. 47-59
    • Flajnik, M.F.1    Kasahara, M.2
  • 145
    • 0034999879 scopus 로고    scopus 로고
    • All in the family: The BTB/POZ, KRAB, and SCAN domains
    • Collins T, Stone JR, Williams AJ. All in the family: the BTB/POZ, KRAB, and SCAN domains. Mol Cell Biol. 2001;21(11):3609-15. doi:10.1128/MCB.21.11.3609-3615.2001.
    • (2001) Mol Cell Biol. , vol.21 , Issue.11 , pp. 3609-3615
    • Collins, T.1    Stone, J.R.2    Williams, A.J.3
  • 146
    • 11344286054 scopus 로고    scopus 로고
    • Mammalian SCAN domain dimer is a domain-swapped homolog of the HIV capsid C-terminal domain
    • Ivanov D, Stone JR, Maki JL, Collins T, Wagner G. Mammalian SCAN domain dimer is a domain-swapped homolog of the HIV capsid C-terminal domain. Mol Cell. 2005;17(1):137-43. doi:10.1016/j.molcel.2004.12.015.
    • (2005) Mol Cell. , vol.17 , Issue.1 , pp. 137-143
    • Ivanov, D.1    Stone, J.R.2    Maki, J.L.3    Collins, T.4    Wagner, G.5
  • 147
    • 12344254020 scopus 로고    scopus 로고
    • Domain swapping and retroviral assembly
    • Kingston RL, Vogt VM. Domain swapping and retroviral assembly. Mol Cell. 2005;17(2):166-7. doi:10.1016/j.molcel.2005.01.002.
    • (2005) Mol Cell. , vol.17 , Issue.2 , pp. 166-167
    • Kingston, R.L.1    Vogt, V.M.2
  • 148
    • 66149110427 scopus 로고    scopus 로고
    • Regulation of episomal gene expression by KRAB/KAP1-mediated histone modifications
    • Barde I, Laurenti E, Verp S, Groner AC, Towne C, Padrun V, et al. Regulation of episomal gene expression by KRAB/KAP1-mediated histone modifications. J Virol. 2009;83(11):5574-80. doi:10.1128/JVI.00001-09.
    • (2009) J Virol. , vol.83 , Issue.11 , pp. 5574-5580
    • Barde, I.1    Laurenti, E.2    Verp, S.3    Groner, A.C.4    Towne, C.5    Padrun, V.6
  • 150
    • 84893871312 scopus 로고    scopus 로고
    • The diversity of zinc-finger genes on human chromosome 19 provides an evolutionary mechanism for defense against inherited endogenous retroviruses
    • Lukic S, Nicolas JC, Levine AJ. The diversity of zinc-finger genes on human chromosome 19 provides an evolutionary mechanism for defense against inherited endogenous retroviruses. Cell Death Differ. 2014;21(3):381-7. doi:10.1038/cdd.2013.150.
    • (2014) Cell Death Differ. , vol.21 , Issue.3 , pp. 381-387
    • Lukic, S.1    Nicolas, J.C.2    Levine, A.J.3
  • 151
    • 70350232064 scopus 로고    scopus 로고
    • Endogenous retroviral LTRs as promoters for human genes: A critical assessment
    • Cohen CJ, Lock WM, Mager DL. Endogenous retroviral LTRs as promoters for human genes: a critical assessment. Gene. 2009;448(2):105-14. doi:10.1016/j.gene.2009.06.020.
    • (2009) Gene , vol.448 , Issue.2 , pp. 105-114
    • Cohen, C.J.1    Lock, W.M.2    Mager, D.L.3
  • 152
    • 79952742456 scopus 로고    scopus 로고
    • Endogenous retrovirus drives hitherto unknown proapoptotic p63 isoforms in the male germ line of humans and great apes
    • Beyer U, Moll-Rocek J, Moll UM, Dobbelstein M. Endogenous retrovirus drives hitherto unknown proapoptotic p63 isoforms in the male germ line of humans and great apes. Proc Natl Acad Sci U S A. 2011;108(9):3624-9. doi:10.1073/pnas.1016201108.
    • (2011) Proc Natl Acad Sci U S A , vol.108 , Issue.9 , pp. 3624-3629
    • Beyer, U.1    Moll-Rocek, J.2    Moll, U.M.3    Dobbelstein, M.4
  • 153
    • 84911936991 scopus 로고    scopus 로고
    • Widespread contribution of transposable elements to the innovation of gene regulatory networks
    • Sundaram V, Cheng Y, Ma Z, Li D, Xing X, Edge P, et al. Widespread contribution of transposable elements to the innovation of gene regulatory networks. Genome Res. 2014;24(12):1963-76. doi:10.1101/gr.168872.113.
    • (2014) Genome Res. , vol.24 , Issue.12 , pp. 1963-1976
    • Sundaram, V.1    Cheng, Y.2    Ma, Z.3    Li, D.4    Xing, X.5    Edge, P.6
  • 154
    • 84922820231 scopus 로고    scopus 로고
    • Ancient transposable elements transformed the uterine regulatory landscape and transcriptome during the evolution of mammalian pregnancy
    • Lynch VJ, Nnamani MC, Kapusta A, Brayer K, Plaza SL, Mazur EC, et al. Ancient Transposable Elements Transformed the Uterine Regulatory Landscape and Transcriptome during the Evolution of Mammalian Pregnancy. Cell reports. 2015. doi:10.1016/j.celrep.2014.12.052.
    • (2015) Cell Reports
    • Lynch, V.J.1    Nnamani, M.C.2    Kapusta, A.3    Brayer, K.4    Plaza, S.L.5    Mazur, E.C.6
  • 155
    • 84922115236 scopus 로고    scopus 로고
    • Primatespecific endogenous retrovirus-driven transcription defines naive-like stem cells
    • Wang J, Xie G, Singh M, Ghanbarian AT, Rasko T, Szvetnik A, et al. Primatespecific endogenous retrovirus-driven transcription defines naive-like stem cells. Nature. 2014;516(7531):405-9. doi:10.1038/nature13804.
    • (2014) Nature , vol.516 , Issue.7531 , pp. 405-409
    • Wang, J.1    Xie, G.2    Singh, M.3    Ghanbarian, A.T.4    Rasko, T.5    Szvetnik, A.6
  • 156
    • 84930205085 scopus 로고    scopus 로고
    • Retrotransposons shape species-specific embryonic stem cell gene expression
    • Robbez-Masson L, Rowe HM. Retrotransposons shape species-specific embryonic stem cell gene expression. Retrovirology. 2015;12(1):45. doi:10.1186/s12977-015-0173-5.
    • (2015) Retrovirology , vol.12 , Issue.1 , pp. 45
    • Robbez-Masson, L.1    Rowe, H.M.2
  • 157
    • 84874626481 scopus 로고    scopus 로고
    • TRIM28 repression of retrotransposon-based enhancers is necessary to preserve transcriptional dynamics in embryonic stem cells
    • Rowe HM, Kapopoulou A, Corsinotti A, Fasching L, Macfarlan TS, Tarabay Y, et al. TRIM28 repression of retrotransposon-based enhancers is necessary to preserve transcriptional dynamics in embryonic stem cells. Genome Res. 2013;23(3):452-61. doi:10.1101/gr.147678.112.
    • (2013) Genome Res. , vol.23 , Issue.3 , pp. 452-461
    • Rowe, H.M.1    Kapopoulou, A.2    Corsinotti, A.3    Fasching, L.4    Macfarlan, T.S.5    Tarabay, Y.6
  • 158
    • 79961159060 scopus 로고    scopus 로고
    • The clf2 gene has an epigenetic role in the multifactorial etiology of cleft lip and palate in the A/WySn mouse strain
    • Plamondon JA, Harris MJ, Mager DL, Gagnier L, Juriloff DM. The clf2 gene has an epigenetic role in the multifactorial etiology of cleft lip and palate in the A/WySn mouse strain. Birth Defects Res A Clin Mol Teratol. 2011;91(8):716-27. doi:10.1002/bdra.20788.
    • (2011) Birth Defects Res A Clin Mol Teratol. , vol.91 , Issue.8 , pp. 716-727
    • Plamondon, J.A.1    Harris, M.J.2    Mager, D.L.3    Gagnier, L.4    Juriloff, D.M.5
  • 159
    • 0034712047 scopus 로고    scopus 로고
    • Mammalian neural stem cells
    • Gage FH. Mammalian neural stem cells. Science. 2000;287(5457):1433-8.
    • (2000) Science , vol.287 , Issue.5457 , pp. 1433-1438
    • Gage, F.H.1
  • 160
    • 53249098795 scopus 로고    scopus 로고
    • A maternal-zygotic effect gene, Zfp57, maintains both maternal and paternal imprints
    • Li X, Ito M, Zhou F, Youngson N, Zuo X, Leder P, et al. A maternal-zygotic effect gene, Zfp57, maintains both maternal and paternal imprints. Dev Cell. 2008;15(4):547-57. doi:10.1016/j.devcel.2008.08.014.
    • (2008) Dev Cell. , vol.15 , Issue.4 , pp. 547-557
    • Li, X.1    Ito, M.2    Zhou, F.3    Youngson, N.4    Zuo, X.5    Leder, P.6
  • 161
    • 48349092985 scopus 로고    scopus 로고
    • Hypomethylation of multiple imprinted loci in individuals with transient neonatal diabetes is associated with mutations in ZFP57
    • Mackay DJ, Callaway JL, Marks SM, White HE, Acerini CL, Boonen SE, et al. Hypomethylation of multiple imprinted loci in individuals with transient neonatal diabetes is associated with mutations in ZFP57. Nat Genet. 2008;40(8):949-51. doi:10.1038/ng.187.
    • (2008) Nat Genet. , vol.40 , Issue.8 , pp. 949-951
    • Mackay, D.J.1    Callaway, J.L.2    Marks, S.M.3    White, H.E.4    Acerini, C.L.5    Boonen, S.E.6
  • 162
    • 84938910089 scopus 로고    scopus 로고
    • Allele-specific binding of ZFP57 in the epigenetic regulation of imprinted and non-imprinted monoallelic expression
    • Strogantsev R, Krueger F, Yamazawa K, Shi H, Gould P, Goldman-Roberts M, et al. Allele-specific binding of ZFP57 in the epigenetic regulation of imprinted and non-imprinted monoallelic expression. Genome Biol. 2015;16:112. doi:10.1186/s13059-015-0672-7.
    • (2015) Genome Biol. , vol.16 , pp. 112
    • Strogantsev, R.1    Krueger, F.2    Yamazawa, K.3    Shi, H.4    Gould, P.5    Goldman-Roberts, M.6
  • 163
    • 77955351626 scopus 로고    scopus 로고
    • Retrotransposition and genomic imprinting
    • Cowley M, Oakey RJ. Retrotransposition and genomic imprinting. Briefings in functional genomics. 2010;9(4):340-6. doi:10.1093/bfgp/elq015.
    • (2010) Briefings in Functional Genomics , vol.9 , Issue.4 , pp. 340-346
    • Cowley, M.1    Oakey, R.J.2
  • 164
    • 0242361621 scopus 로고    scopus 로고
    • Regulator of sex-limitation (Rsl) encodes a pair of KRAB zinc-finger genes that control sexually dimorphic liver gene expression
    • Krebs CJ, Larkins LK, Price R, Tullis KM, Miller RD, Robins DM. Regulator of sex-limitation (Rsl) encodes a pair of KRAB zinc-finger genes that control sexually dimorphic liver gene expression. Genes Dev. 2003;17(21):2664-74. doi:10.1101/gad.1135703.
    • (2003) Genes Dev. , vol.17 , Issue.21 , pp. 2664-2674
    • Krebs, C.J.1    Larkins, L.K.2    Price, R.3    Tullis, K.M.4    Miller, R.D.5    Robins, D.M.6
  • 165
    • 0842312531 scopus 로고    scopus 로고
    • Comparison of cytochrome P450 (CYP) genes from the mouse and human genomes, including nomenclature recommendations for genes, pseudogenes and alternative-splice variants
    • Nelson DR, Zeldin DC, Hoffman SM, Maltais LJ, Wain HM, Nebert DW. Comparison of cytochrome P450 (CYP) genes from the mouse and human genomes, including nomenclature recommendations for genes, pseudogenes and alternative-splice variants. Pharmacogenetics. 2004;14(1):1-18.
    • (2004) Pharmacogenetics , vol.14 , Issue.1 , pp. 1-18
    • Nelson, D.R.1    Zeldin, D.C.2    Hoffman, S.M.3    Maltais, L.J.4    Wain, H.M.5    Nebert, D.W.6
  • 166
    • 84867220511 scopus 로고    scopus 로고
    • Liver-specific ablation of Kruppel-associated box-associated protein 1 in mice leads to male-predominant hepatosteatosis and development of liver adenoma
    • Bojkowska K, Aloisio F, Cassano M, Kapopoulou A, Santoni De Sio F, Zangger N, et al. Liver-specific ablation of Kruppel-associated box-associated protein 1 in mice leads to male-predominant hepatosteatosis and development of liver adenoma. Hepatology. 2012;56(4):1279-90. doi:10.1002/hep.25767.
    • (2012) Hepatology , vol.56 , Issue.4 , pp. 1279-1290
    • Bojkowska, K.1    Aloisio, F.2    Cassano, M.3    Kapopoulou, A.4    Santoni De-Sio, F.5    Zangger, N.6
  • 167
    • 34249736446 scopus 로고    scopus 로고
    • Rapid birth-death evolution specific to xenobiotic cytochrome P450 genes in vertebrates
    • Thomas JH. Rapid birth-death evolution specific to xenobiotic cytochrome P450 genes in vertebrates. PLoS Genet. 2007;3(5):e67. doi:10.1371/journal.pgen.0030067.
    • (2007) PLoS Genet. , vol.3 , Issue.5 , pp. e67
    • Thomas, J.H.1
  • 168
    • 0023734310 scopus 로고
    • An ancient provirus has imposed androgen regulation on the adjacent mouse sex-limited protein gene
    • Stavenhagen JB, Robins DM. An ancient provirus has imposed androgen regulation on the adjacent mouse sex-limited protein gene. Cell. 1988;55(2):247-54.
    • (1988) Cell , vol.55 , Issue.2 , pp. 247-254
    • Stavenhagen, J.B.1    Robins, D.M.2
  • 169
    • 0024026429 scopus 로고
    • A complex androgenresponsive enhancer resides 2 kilobases upstream of the mouse Slp gene
    • Loreni F, Stavenhagen J, Kalff M, Robins DM. A complex androgenresponsive enhancer resides 2 kilobases upstream of the mouse Slp gene. Mol Cell Biol. 1988;8(6):2350-60.
    • (1988) Mol Cell Biol. , vol.8 , Issue.6 , pp. 2350-2360
    • Loreni, F.1    Stavenhagen, J.2    Kalff, M.3    Robins, D.M.4
  • 170
    • 84866402289 scopus 로고    scopus 로고
    • The KRAB zinc finger protein RSL1 regulates sex- and tissue-specific promoter methylation and dynamic hormone-responsive chromatin configuration
    • Krebs CJ, Schultz DC, Robins DM. The KRAB zinc finger protein RSL1 regulates sex- and tissue-specific promoter methylation and dynamic hormone-responsive chromatin configuration. Mol Cell Biol. 2012;32(18):3732-42. doi:10.1128/MCB.00615-12.
    • (2012) Mol Cell Biol. , vol.32 , Issue.18 , pp. 3732-3742
    • Krebs, C.J.1    Schultz, D.C.2    Robins, D.M.3
  • 171
    • 18844445594 scopus 로고    scopus 로고
    • Expansion and diversification of KRAB zinc-finger genes within a cluster including Regulator of sex-limitation 1 and 2
    • Krebs CJ, Larkins LK, Khan SM, Robins DM. Expansion and diversification of KRAB zinc-finger genes within a cluster including Regulator of sex-limitation 1 and 2. Genomics. 2005;85(6):752-61. doi:10.1016/j.ygeno.2005.03.004.
    • (2005) Genomics , vol.85 , Issue.6 , pp. 752-761
    • Krebs, C.J.1    Larkins, L.K.2    Khan, S.M.3    Robins, D.M.4
  • 172
    • 84924388025 scopus 로고    scopus 로고
    • PRDM9 drives evolutionary erosion of hotspots in Mus musculus through haplotype-specific initiation of meiotic recombination
    • Baker CL, Kajita S, Walker M, Saxl RL, Raghupathy N, Choi K, et al. PRDM9 drives evolutionary erosion of hotspots in Mus musculus through haplotype-specific initiation of meiotic recombination. PLoS Genet. 2015;11(1):e1004916. doi:10.1371/journal.pgen.1004916.
    • (2015) PLoS Genet. , vol.11 , Issue.1 , pp. e1004916
    • Baker, C.L.1    Kajita, S.2    Walker, M.3    Saxl, R.L.4    Raghupathy, N.5    Choi, K.6
  • 173
    • 16844377748 scopus 로고    scopus 로고
    • Fine-scale recombination patterns differ between chimpanzees and humans
    • Ptak SE, Hinds DA, Koehler K, Nickel B, Patil N, Ballinger DG, et al. Fine-scale recombination patterns differ between chimpanzees and humans. Nat Genet. 2005;37(4):429-34. doi:10.1038/ng1529.
    • (2005) Nat Genet. , vol.37 , Issue.4 , pp. 429-434
    • Ptak, S.E.1    Hinds, D.A.2    Koehler, K.3    Nickel, B.4    Patil, N.5    Ballinger, D.G.6
  • 174
    • 20144387806 scopus 로고    scopus 로고
    • Comparison of fine-scale recombination rates in humans and chimpanzees
    • Winckler W, Myers SR, Richter DJ, Onofrio RC, McDonald GJ, Bontrop RE, et al. Comparison of fine-scale recombination rates in humans and chimpanzees. Science. 2005;308(5718):107-11. doi:10.1126/science.1105322.
    • (2005) Science , vol.308 , Issue.5718 , pp. 107-111
    • Winckler, W.1    Myers, S.R.2    Richter, D.J.3    Onofrio, R.C.4    McDonald, G.J.5    Bontrop, R.E.6
  • 175
    • 39449116116 scopus 로고    scopus 로고
    • High-resolution mapping of crossovers reveals extensive variation in fine-scale recombination patterns among humans
    • Coop G, Wen X, Ober C, Pritchard JK, Przeworski M. High-resolution mapping of crossovers reveals extensive variation in fine-scale recombination patterns among humans. Science. 2008;319(5868):1395-8. doi:10.1126/science.1151851.
    • (2008) Science , vol.319 , Issue.5868 , pp. 1395-1398
    • Coop, G.1    Wen, X.2    Ober, C.3    Pritchard, J.K.4    Przeworski, M.5
  • 176
    • 84855167151 scopus 로고    scopus 로고
    • The case of the fickle fingers: How the PRDM9 zinc finger protein specifies meiotic recombination hotspots in humans
    • Segurel L, Leffler EM, Przeworski M. The case of the fickle fingers: how the PRDM9 zinc finger protein specifies meiotic recombination hotspots in humans. PLoS Biol. 2011;9(12):e1001211. doi:10.1371/journal.pbio.1001211.
    • (2011) PLoS Biol. , vol.9 , Issue.12 , pp. e1001211
    • Segurel, L.1    Leffler, E.M.2    Przeworski, M.3
  • 177
    • 76749151934 scopus 로고    scopus 로고
    • Prdm9 controls activation of mammalian recombination hotspots
    • Parvanov ED, Petkov PM, Paigen K. Prdm9 controls activation of mammalian recombination hotspots. Science. 2010;327(5967):835. doi:10.1126/science.1181495.
    • (2010) Science , vol.327 , Issue.5967 , pp. 835
    • Parvanov, E.D.1    Petkov, P.M.2    Paigen, K.3
  • 178
    • 76749170346 scopus 로고    scopus 로고
    • PRDM9 is a major determinant of meiotic recombination hotspots in humans and mice
    • Baudat F, Buard J, Grey C, Fledel-Alon A, Ober C, Przeworski M, et al. PRDM9 is a major determinant of meiotic recombination hotspots in humans and mice. Science. 2010;327(5967):836-40. doi:10.1126/science.1183439.
    • (2010) Science , vol.327 , Issue.5967 , pp. 836-840
    • Baudat, F.1    Buard, J.2    Grey, C.3    Fledel-Alon, A.4    Ober, C.5    Przeworski, M.6
  • 179
    • 77957579303 scopus 로고    scopus 로고
    • PRDM9 variation strongly influences recombination hot-spot activity and meiotic instability in humans
    • Berg IL, Neumann R, Lam KW, Sarbajna S, Odenthal-Hesse L, May CA, et al. PRDM9 variation strongly influences recombination hot-spot activity and meiotic instability in humans. Nat Genet. 2010;42(10):859-63. doi:10.1038/ng.658.
    • (2010) Nat Genet. , vol.42 , Issue.10 , pp. 859-863
    • Berg, I.L.1    Neumann, R.2    Lam, K.W.3    Sarbajna, S.4    Odenthal-Hesse, L.5    May, C.A.6
  • 180
    • 84903979341 scopus 로고    scopus 로고
    • Primate evolution of the recombination regulator PRDM9
    • Schwartz JJ, Roach DJ, Thomas JH, Shendure J. Primate evolution of the recombination regulator PRDM9. Nat Commun. 2014;5:4370. doi:10.1038/ncomms5370.
    • (2014) Nat Commun. , vol.5 , pp. 4370
    • Schwartz, J.J.1    Roach, D.J.2    Thomas, J.H.3    Shendure, J.4
  • 181
    • 74249088732 scopus 로고    scopus 로고
    • Accelerated evolution of the Prdm9 speciation gene across diverse metazoan taxa
    • Oliver PL, Goodstadt L, Bayes JJ, Birtle Z, Roach KC, Phadnis N, et al. Accelerated evolution of the Prdm9 speciation gene across diverse metazoan taxa. PLoS Genet. 2009;5(12):e1000753. doi:10.1371/journal.pgen.1000753.
    • (2009) PLoS Genet. , vol.5 , Issue.12 , pp. e1000753
    • Oliver, P.L.1    Goodstadt, L.2    Bayes, J.J.3    Birtle, Z.4    Roach, K.C.5    Phadnis, N.6
  • 182
    • 77954061801 scopus 로고    scopus 로고
    • Extraordinary molecular evolution in the PRDM9 fertility gene
    • Thomas JH, Emerson RO, Shendure J. Extraordinary molecular evolution in the PRDM9 fertility gene. PLoS One. 2009;4(12):e8505. doi:10.1371/journal.pone.0008505.
    • (2009) PLoS One , vol.4 , Issue.12 , pp. e8505
    • Thomas, J.H.1    Emerson, R.O.2    Shendure, J.3
  • 183
    • 76749155072 scopus 로고    scopus 로고
    • Drive against hotspot motifs in primates implicates the PRDM9 gene in meiotic recombination
    • Myers S, Bowden R, Tumian A, Bontrop RE, Freeman C, MacFie TS, et al. Drive against hotspot motifs in primates implicates the PRDM9 gene in meiotic recombination. Science. 2010;327(5967):876-9. doi:10.1126/science.1182363.
    • (2010) Science , vol.327 , Issue.5967 , pp. 876-879
    • Myers, S.1    Bowden, R.2    Tumian, A.3    Bontrop, R.E.4    Freeman, C.5    MacFie, T.S.6
  • 184
    • 26844482093 scopus 로고    scopus 로고
    • A fine-scale map of recombination rates and hotspots across the human genome
    • Myers S, Bottolo L, Freeman C, McVean G, Donnelly P. A fine-scale map of recombination rates and hotspots across the human genome. Science. 2005;310(5746):321-4. doi:10.1126/science.1117196.
    • (2005) Science , vol.310 , Issue.5746 , pp. 321-324
    • Myers, S.1    Bottolo, L.2    Freeman, C.3    McVean, G.4    Donnelly, P.5
  • 185
    • 0027174559 scopus 로고
    • Identification of a new, abundant superfamily of mammalian LTRtransposons
    • Smit AF. Identification of a new, abundant superfamily of mammalian LTRtransposons. Nucleic Acids Res. 1993;21(8):1863-72.
    • (1993) Nucleic Acids Res. , vol.21 , Issue.8 , pp. 1863-1872
    • Smit, A.F.1
  • 186
    • 84876672046 scopus 로고    scopus 로고
    • DNA binding specificities of the long zinc-finger recombination protein PRDM9
    • Billings T, Parvanov ED, Baker CL, Walker M, Paigen K, Petkov PM. DNA binding specificities of the long zinc-finger recombination protein PRDM9. Genome Biol. 2013;14(4):R35. doi:10.1186/gb-2013-14-4-r35.
    • (2013) Genome Biol. , vol.14 , Issue.4 , pp. R35
    • Billings, T.1    Parvanov, E.D.2    Baker, C.L.3    Walker, M.4    Paigen, K.5    Petkov, P.M.6
  • 187
    • 50649114260 scopus 로고    scopus 로고
    • The protein-binding potential of C2H2 zinc finger domains
    • Brayer KJ, Kulshreshtha S, Segal DJ. The protein-binding potential of C2H2 zinc finger domains. Cell Biochem Biophys. 2008;51(1):9-19. doi:10.1007/s12013-008-9007-6.
    • (2008) Cell Biochem Biophys. , vol.51 , Issue.1 , pp. 9-19
    • Brayer, K.J.1    Kulshreshtha, S.2    Segal, D.J.3
  • 188
    • 0034744439 scopus 로고    scopus 로고
    • Three classes of C2H2 zinc finger proteins
    • Iuchi S. Three classes of C2H2 zinc finger proteins. Cell Mol Life Sci. 2001;58(4):625-35.
    • (2001) Cell Mol Life Sci. , vol.58 , Issue.4 , pp. 625-635
    • Iuchi, S.1
  • 189
    • 84926619310 scopus 로고    scopus 로고
    • ChIP-nexus enables improved detection of in vivo transcription factor binding footprints
    • He Q, Johnston J, Zeitlinger J. ChIP-nexus enables improved detection of in vivo transcription factor binding footprints. Nat Biotechnol. 2015;33(4):395-401. doi:10.1038/nbt.3121.
    • (2015) Nat Biotechnol. , vol.33 , Issue.4 , pp. 395-401
    • He, Q.1    Johnston, J.2    Zeitlinger, J.3
  • 190
    • 83255164884 scopus 로고    scopus 로고
    • Comprehensive genome-wide protein-DNA interactions detected at single-nucleotide resolution
    • Rhee HS, Pugh BF. Comprehensive genome-wide protein-DNA interactions detected at single-nucleotide resolution. Cell. 2011;147(6):1408-19. doi:10.1016/j.cell.2011.11.013.
    • (2011) Cell , vol.147 , Issue.6 , pp. 1408-1419
    • Rhee, H.S.1    Pugh, B.F.2
  • 191
    • 73949154808 scopus 로고    scopus 로고
    • Regulation of the transcription factor YY1 in mitosis through phosphorylation of its DNA-binding domain
    • Rizkallah R, Hurt MM. Regulation of the transcription factor YY1 in mitosis through phosphorylation of its DNA-binding domain. Mol Biol Cell. 2009;20(22):4766-76. doi:10.1091/mbc.E09-04-0264.
    • (2009) Mol Biol Cell. , vol.20 , Issue.22 , pp. 4766-4776
    • Rizkallah, R.1    Hurt, M.M.2
  • 192
    • 84867380047 scopus 로고    scopus 로고
    • Targeted disruption in mice of a neural stem cell-maintaining, KRAB-Zn fingerencoding gene that has rapidly evolved in the human lineage
    • Chien HC, Wang HY, Su YN, Lai KY, Lu LC, Chen PC, et al. Targeted disruption in mice of a neural stem cell-maintaining, KRAB-Zn fingerencoding gene that has rapidly evolved in the human lineage. PLoS One. 2012;7(10):e47481. doi:10.1371/journal.pone.0047481.
    • (2012) PLoS One , vol.7 , Issue.10 , pp. e47481
    • Chien, H.C.1    Wang, H.Y.2    Su, Y.N.3    Lai, K.Y.4    Lu, L.C.5    Chen, P.C.6
  • 193
    • 84907911593 scopus 로고    scopus 로고
    • The functional significance of common polymorphisms in zinc finger transcription factors
    • Lockwood SH, Guan A, Yu AS, Zhang C, Zykovich A, Korf I, et al. The functional significance of common polymorphisms in zinc finger transcription factors. G3. 2014;4(9):1647-55. doi:10.1534/g3.114.012195.
    • (2014) G3 , vol.4 , Issue.9 , pp. 1647-1655
    • Lockwood, S.H.1    Guan, A.2    Yu, A.S.3    Zhang, C.4    Zykovich, A.5    Korf, I.6
  • 195
    • 84929311561 scopus 로고    scopus 로고
    • Lineage specific evolution of the VNTR composite retrotransposon central domain and its role in retrotransposition of gibbon LAVA elements
    • Lupan I, Bulzu P, Popescu O, Damert A. Lineage specific evolution of the VNTR composite retrotransposon central domain and its role in retrotransposition of gibbon LAVA elements. BMC Genomics. 2015;16(1):389. doi:10.1186/s12864-015-1543-z.
    • (2015) BMC Genomics , vol.16 , Issue.1 , pp. 389
    • Lupan, I.1    Bulzu, P.2    Popescu, O.3    Damert, A.4
  • 196
    • 84866405520 scopus 로고    scopus 로고
    • Centromere remodeling in Hoolock leuconedys (Hylobatidae) by a new transposable element unique to the gibbons
    • Carbone L, Harris RA, Mootnick AR, Milosavljevic A, Martin DI, Rocchi M, et al. Centromere remodeling in Hoolock leuconedys (Hylobatidae) by a new transposable element unique to the gibbons. Genome Biol Evol. 2012;4(7):648-58. doi:10.1093/gbe/evs048.
    • (2012) Genome Biol Evol. , vol.4 , Issue.7 , pp. 648-658
    • Carbone, L.1    Harris, R.A.2    Mootnick, A.R.3    Milosavljevic, A.4    Martin, D.I.5    Rocchi, M.6
  • 197
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004;32(5):1792-7. doi:10.1093/nar/gkh340.
    • (2004) Nucleic Acids Res. , vol.32 , Issue.5 , pp. 1792-1797
    • Edgar, R.C.1
  • 198
    • 84890330527 scopus 로고    scopus 로고
    • MEGA6: Molecular evolutionary genetics analysis version 6.0
    • Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Mol Biol Evol. 2013;30(12):2725-9. doi:10.1093/molbev/mst197.
    • (2013) Mol Biol Evol. , vol.30 , Issue.12 , pp. 2725-2729
    • Tamura, K.1    Stecher, G.2    Peterson, D.3    Filipski, A.4    Kumar, S.5
  • 199
    • 79953300078 scopus 로고    scopus 로고
    • FIMO: Scanning for occurrences of a given motif
    • Grant CE, Bailey TL, Noble WS. FIMO: scanning for occurrences of a given motif. Bioinformatics. 2011;27(7):1017-8. doi:10.1093/bioinformatics/btr064.
    • (2011) Bioinformatics , vol.27 , Issue.7 , pp. 1017-1018
    • Grant, C.E.1    Bailey, T.L.2    Noble, W.S.3
  • 200
    • 84899493057 scopus 로고    scopus 로고
    • Ngs.plot: Quick mining and visualization of next-generation sequencing data by integrating genomic databases
    • Shen L, Shao N, Liu X, Nestler E. ngs.plot: Quick mining and visualization of next-generation sequencing data by integrating genomic databases. BMC Genomics. 2014;15:284. doi:10.1186/1471-2164-15-284.
    • (2014) BMC Genomics , vol.15 , pp. 284
    • Shen, L.1    Shao, N.2    Liu, X.3    Nestler, E.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.