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Volumn 513, Issue 7517, 2014, Pages 195-201

Gibbon genome and the fast karyotype evolution of small apes

(93)  Carbone, Lucia a,b   Alan Harris, R c   Gnerre, Sante d   Veeramah, Krishna R e,f   Lorente Galdos, Belen g   Huddleston, John h,i   Meyer, Thomas J a   Herrero, Javier j,k,ai   Roos, Christian l   Aken, Bronwen j,m   Anaclerio, Fabio n   Archidiacono, Nicoletta n   Baker, Carl h   Barrell, Daniel j,m   Batzer, Mark A o   Beal, Kathryn j   Blancher, Antoine p   Bohrson, Craig L q   Brameier, Markus l   Campbell, Michael S r   more..


Author keywords

[No Author keywords available]

Indexed keywords

CHROMOSOME; EVOLUTIONARY BIOLOGY; GENE EXPRESSION; GENOME; GEOGRAPHICAL VARIATION; KARYOTYPE; MATURATION; PRIMATE;

EID: 84907284157     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature13679     Document Type: Article
Times cited : (231)

References (46)
  • 2
    • 33845979865 scopus 로고    scopus 로고
    • A high-resolution map of synteny disruptions in gibbon and human genomes
    • Carbone, L. et al. A high-resolution map of synteny disruptions in gibbon and human genomes. PLoS Genet. 2, e223 (2006).
    • (2006) PLoS Genet. , vol.2 , pp. e223
    • Carbone, L.1
  • 3
    • 79251553493 scopus 로고    scopus 로고
    • Comparative and demographic analysis of orang-utan genomes
    • Locke, D. P. et al. Comparative and demographic analysis of orang-utan genomes. Nature 469, 529-533 (2011).
    • (2011) Nature , vol.469 , pp. 529-533
    • Locke, D.P.1
  • 4
    • 34247352040 scopus 로고    scopus 로고
    • Evolutionary and biomedical insights from the rhesus macaque genome
    • Gibbs, R. A. et al. Evolutionary and biomedical insights from the rhesus macaque genome. Science 316, 222-234 (2007).
    • (2007) Science , vol.316 , pp. 222-234
    • Gibbs, R.A.1
  • 5
    • 59949094792 scopus 로고    scopus 로고
    • Sequencing human-gibbon breakpoints of synteny reveals mosaic new insertions at rearrangement sites
    • Girirajan, S. et al. Sequencing human-gibbon breakpoints of synteny reveals mosaic new insertions at rearrangement sites. Genome Res. 19, 178-190 (2009).
    • (2009) Genome Res. , vol.19 , pp. 178-190
    • Girirajan, S.1
  • 6
    • 67651214032 scopus 로고    scopus 로고
    • Evolutionary breakpoints in the gibbon suggest association between cytosine methylation and karyotype evolution
    • Carbone, L. et al. Evolutionary breakpoints in the gibbon suggest association between cytosine methylation and karyotype evolution. PLoS Genet. 5, e1000538 (2009).
    • (2009) PLoS Genet. , vol.5 , pp. e1000538
    • Carbone, L.1
  • 7
    • 33745373606 scopus 로고    scopus 로고
    • Primate segmental duplications: Crucibles of evolution, diversity and disease
    • Bailey, J. A. & Eichler, E. E. Primate segmental duplications: crucibles of evolution, diversity and disease. Nature Rev. Genet. 7, 552-564 (2006).
    • (2006) Nature Rev. Genet. , vol.7 , pp. 552-564
    • Bailey, J.A.1    Eichler, E.E.2
  • 8
    • 34748863465 scopus 로고    scopus 로고
    • IgH class switching and translocations use a robust non-classical end-joining pathway
    • Yan, C. T. et al. IgH class switching and translocations use a robust non-classical end-joining pathway. Nature 449, 478-482 (2007).
    • (2007) Nature , vol.449 , pp. 478-482
    • Yan, C.T.1
  • 9
    • 59249105978 scopus 로고    scopus 로고
    • A microhomology-mediated break-induced replication model for the origin of human copy number variation
    • Hastings, P. J., Ira, G. & Lupski, J. R. A microhomology-mediated break-induced replication model for the origin of human copy number variation. PLoS Genet. 5, e1000327 (2009).
    • (2009) PLoS Genet. , vol.5 , pp. e1000327
    • Hastings, P.J.1    Ira, G.2    Lupski, J.R.3
  • 10
    • 84875127327 scopus 로고    scopus 로고
    • CTCF and cohesin: Linking gene regulatory elements with their targets
    • Merkenschlager, M. & Odom, D. T. CTCF and cohesin: linking gene regulatory elements with their targets. Cell 152, 1285-1297 (2013).
    • (2013) Cell , vol.152 , pp. 1285-1297
    • Merkenschlager, M.1    Odom, D.T.2
  • 11
    • 84891352724 scopus 로고    scopus 로고
    • Co-binding by YY1 identifies the transcriptionally active, highly conserved set of CTCF-bound regions in primate genomes
    • Schwalie, P. C. et al. Co-binding by YY1 identifies the transcriptionally active, highly conserved set of CTCF-bound regions in primate genomes. Genome Biol. 14, R148 (2013).
    • (2013) Genome Biol. , vol.14 , pp. R148
    • Schwalie, P.C.1
  • 12
    • 84866405520 scopus 로고    scopus 로고
    • Centromere remodeling in Hoolock leuconedys (Hylobatidae) by a new transposable element unique to the gibbons
    • Carbone, L. et al. Centromere remodeling in Hoolock leuconedys (Hylobatidae) by a new transposable element unique to the gibbons. Genome Biol. Evol. 4, 648-658 (2012).
    • (2012) Genome Biol. Evol. , vol.4 , pp. 648-658
    • Carbone, L.1
  • 13
    • 0027450385 scopus 로고
    • Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: Amechanismfor non-LTR retrotransposition
    • Luan, D. D., Korman, M. H., Jakubczak, J. L. & Eickbush, T. H. Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: amechanismfor non-LTR retrotransposition. Cell 72, 595-605 (1993).
    • (1993) Cell , vol.72 , pp. 595-605
    • Luan, D.D.1    Korman, M.H.2    Jakubczak, J.L.3    Eickbush, T.H.4
  • 14
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large genelists using DAVID bioinformatics resources
    • Huang da W., Sherman, B. T. & Lempicki, R. A. Systematic and integrative analysis of large genelists using DAVID bioinformatics resources. Nature Protocols 4, 44-57 (2009).
    • (2009) Nature Protocols , vol.4 , pp. 44-57
    • Da Huang, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 15
    • 47549107689 scopus 로고    scopus 로고
    • GeneMANIA: A realtime multiple association network integration algorithm for predicting gene function
    • Mostafavi, S., Ray, D., Warde-Farley, D., Grouios, C. & Morris, Q. GeneMANIA: a realtime multiple association network integration algorithm for predicting gene function. Genome Biol. 9 (Suppl. 1), S4 (2008).
    • (2008) Genome Biol. , vol.9 , Issue.S4
    • Mostafavi, S.1    Ray, D.2    Warde-Farley, D.3    Grouios, C.4    Morris, Q.5
  • 16
    • 58149194611 scopus 로고    scopus 로고
    • ConsensusPathDB - A database for integrating human functional interaction networks
    • Kamburov, A., Wierling, C., Lehrach, H. & Herwig, R. ConsensusPathDB - a database for integrating human functional interaction networks. Nucleic Acids Res. 37, D623-D628 (2009).
    • (2009) Nucleic Acids Res. , vol.37 , pp. D623-D628
    • Kamburov, A.1    Wierling, C.2    Lehrach, H.3    Herwig, R.4
  • 17
    • 70749158525 scopus 로고    scopus 로고
    • Whole chromosome instability caused by Bub1 insufficiency drives tumorigenesis through tumor suppressor gene loss of heterozygosity
    • Baker, D. J., Jin, F., Jeganathan, K. B. & van Deursen, J. M. Whole chromosome instability caused by Bub1 insufficiency drives tumorigenesis through tumor suppressor gene loss of heterozygosity. Cancer Cell 16, 475-486 (2009).
    • (2009) Cancer Cell , vol.16 , pp. 475-486
    • Baker, D.J.1    Jin, F.2    Jeganathan, K.B.3    Van Deursen, J.M.4
  • 18
    • 80052495937 scopus 로고    scopus 로고
    • MAP4 and CLASP1 operate as a safety mechanismto maintain a stable spindle position in mitosis
    • Samora, C. P. et al. MAP4 and CLASP1 operate as a safety mechanismto maintain a stable spindle position in mitosis. Nature Cell Biol. 13, 1040-1050 (2011).
    • (2011) Nature Cell Biol. , vol.13 , pp. 1040-1050
    • Samora, C.P.1
  • 19
    • 77955615631 scopus 로고    scopus 로고
    • Proteins required for centrosome clustering in cancer cells
    • Leber, B. et al. Proteins required for centrosome clustering in cancer cells. Sci. Transl. Med. 2, 33ra38 (2010).
    • (2010) Sci. Transl. Med. , vol.2 , pp. 33ra38
    • Leber, B.1
  • 20
    • 84872201584 scopus 로고    scopus 로고
    • The Mad1-Mad2 balancing act - A damaged spindle checkpoint in chromosome instability and cancer
    • Schuyler, S. C., Wu, Y. F. & Kuan, V. J. The Mad1-Mad2 balancing act - a damaged spindle checkpoint in chromosome instability and cancer. J. Cell Sci. 125, 4197-4206 (2012).
    • (2012) J. Cell Sci. , vol.125 , pp. 4197-4206
    • Schuyler, S.C.1    Wu, Y.F.2    Kuan, V.J.3
  • 21
    • 84869107164 scopus 로고    scopus 로고
    • Cdk1 and Plk1 mediate a CLASP2 phospho-switch that stabilizes kinetochore-microtubule attachments
    • Maia, A. R. et al. Cdk1 and Plk1 mediate a CLASP2 phospho-switch that stabilizes kinetochore-microtubule attachments. J. Cell Biol. 199, 285-301 (2012).
    • (2012) J. Cell Biol. , vol.199 , pp. 285-301
    • Maia, A.R.1
  • 23
    • 2442667886 scopus 로고    scopus 로고
    • Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes
    • Han, J. S., Szak, S. T. & Boeke, J. D. Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes. Nature 429, 268-274 (2004).
    • (2004) Nature , vol.429 , pp. 268-274
    • Han, J.S.1    Szak, S.T.2    Boeke, J.D.3
  • 24
    • 23744454779 scopus 로고    scopus 로고
    • Gene-breaking: A new paradigm for human retrotransposon-mediated gene evolution
    • Wheelan, S. J., Aizawa, Y., Han, J. S. & Boeke, J. D. Gene-breaking: a new paradigm for human retrotransposon-mediated gene evolution. Genome Res. 15, 1073-1078 (2005).
    • (2005) Genome Res. , vol.15 , pp. 1073-1078
    • Wheelan, S.J.1    Aizawa, Y.2    Han, J.S.3    Boeke, J.D.4
  • 25
    • 70349335202 scopus 로고    scopus 로고
    • 5′-Transducing SVA retrotransposon groups spread efficiently throughout the human genome
    • Damert, A. et al. 5′-Transducing SVA retrotransposon groups spread efficiently throughout the human genome. Genome Res. 19, 1992-2008 (2009).
    • (2009) Genome Res. , vol.19 , pp. 1992-2008
    • Damert, A.1
  • 26
    • 84860530521 scopus 로고    scopus 로고
    • Meiotic DNA double-strand breaks and chromosomeasynapsis in mice are monitored by distinct HORMAD2-independent and -dependent mechanisms
    • Wojtasz, L. et al. Meiotic DNA double-strand breaks and chromosomeasynapsis in mice are monitored by distinct HORMAD2-independent and -dependent mechanisms. Genes Dev. 26, 958-973 (2012).
    • (2012) Genes Dev. , vol.26 , pp. 958-973
    • Wojtasz, L.1
  • 27
    • 67349183958 scopus 로고    scopus 로고
    • Estimating the age of retrotransposon subfamilies using maximum likelihood
    • Marchani, E. E., Xing, J., Witherspoon, D. J., Jorde, L. B.&Rogers, A. R. Estimating the age of retrotransposon subfamilies using maximum likelihood. Genomics 94, 78-82 (2009).
    • (2009) Genomics , vol.94 , pp. 78-82
    • Marchani, E.E.1    Xing, J.2    Witherspoon, D.J.3    Jorde, L.B.4    Rogers, A.R.5
  • 28
    • 80053386624 scopus 로고    scopus 로고
    • Bayesian inference of ancient human demography from individual genome sequences
    • Gronau, I., Hubisz, M. J., Gulko, B., Danko, C. G. & Siepel, A. Bayesian inference of ancient human demography from individual genome sequences. Nature Genet. 43, 1031-1034 (2011).
    • (2011) Nature Genet. , vol.43 , pp. 1031-1034
    • Gronau, I.1    Hubisz, M.J.2    Gulko, B.3    Danko, C.G.4    Siepel, A.5
  • 29
    • 84872318489 scopus 로고    scopus 로고
    • Incomplete lineage sorting is common in extant gibbon genera
    • Wall, J. D. et al. Incomplete lineage sorting is common in extant gibbon genera. PLoS ONE 8, e53682 (2013).
    • (2013) PLoS ONE , vol.8 , pp. e53682
    • Wall, J.D.1
  • 30
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • Drummond, A. J. & Rambaut, A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 7, 214 (2007).
    • (2007) BMC Evol. Biol. , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2
  • 31
    • 79961039058 scopus 로고    scopus 로고
    • Testing for ancient admixture between closely related populations
    • Durand, E. Y., Patterson, N., Reich, D. & Slatkin, M. Testing for ancient admixture between closely related populations. Mol. Biol. Evol. 28, 2239-2252 (2011).
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 2239-2252
    • Durand, E.Y.1    Patterson, N.2    Reich, D.3    Slatkin, M.4
  • 32
    • 36348930415 scopus 로고    scopus 로고
    • A most distant intergeneric hybrid offspring (Larcon) of lesser apes, Nomascus leucogenys and Hylobates lar
    • Hirai, H., Hirai, Y., Domae, H. & Kirihara, Y. A most distant intergeneric hybrid offspring (Larcon) of lesser apes, Nomascus leucogenys and Hylobates lar. Hum. Genet. 122, 477-483 (2007).
    • (2007) Hum. Genet. , vol.122 , pp. 477-483
    • Hirai, H.1    Hirai, Y.2    Domae, H.3    Kirihara, Y.4
  • 33
    • 79960914105 scopus 로고    scopus 로고
    • Inference of human population history from individual whole-genome sequences
    • Li, H. & Durbin, R. Inference of human population history from individual whole-genome sequences. Nature 475, 493-496 (2011).
    • (2011) Nature , vol.475 , pp. 493-496
    • Li, H.1    Durbin, R.2
  • 34
    • 51149097366 scopus 로고    scopus 로고
    • Human-specific gain of function in a developmental enhancer
    • Prabhakar, S. et al. Human-specific gain of function in a developmental enhancer. Science 321, 1346-1350 (2008).
    • (2008) Science , vol.321 , pp. 1346-1350
    • Prabhakar, S.1
  • 35
    • 33748675254 scopus 로고    scopus 로고
    • An RNA gene expressed during cortical development evolved rapidly in humans
    • Pollard, K. S. et al. An RNA gene expressed during cortical development evolved rapidly in humans. Nature 443, 167-172 (2006).
    • (2006) Nature , vol.443 , pp. 167-172
    • Pollard, K.S.1
  • 36
    • 34547803197 scopus 로고    scopus 로고
    • PAML4: Phylogenetic analysis by maximumlikelihood
    • Yang, Z. PAML4: phylogenetic analysis by maximumlikelihood. Mol. Biol. Evol. 24, 1586-1591 (2007).
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1586-1591
    • Yang, Z.1
  • 37
    • 69249217938 scopus 로고    scopus 로고
    • Functional anatomy of the gibbon forelimb: Adaptations to a brachiating lifestyle
    • Michilsens, F., Vereecke, E. E., D'AoÛt, K. & Aerts, P. Functional anatomy of the gibbon forelimb: adaptations to a brachiating lifestyle. J. Anat. 215, 335-354 (2009).
    • (2009) J. Anat. , vol.215 , pp. 335-354
    • Michilsens, F.1    Vereecke, E.E.2    D'Août, K.3    Aerts, P.4
  • 38
    • 84866514226 scopus 로고    scopus 로고
    • Evaluation of genes involved in limb development, angiogenesis, and coagulation as risk factors for congenital limb deficiencies
    • Browne, M. L. et al. Evaluation of genes involved in limb development, angiogenesis, and coagulation as risk factors for congenital limb deficiencies. Am. J. Med. Genet. A. 158A, 2463-2472 (2012).
    • (2012) Am. J. Med. Genet. A. , vol.158 A , pp. 2463-2472
    • Browne, M.L.1
  • 39
    • 33847227672 scopus 로고    scopus 로고
    • Consortium for osteogenesis imperfecta mutations in the helical domain of type I collagen: Regions rich in lethal mutations align with collagen binding sites for integrins and proteoglycans
    • Marini, J. C. et al. Consortium for osteogenesis imperfecta mutations in the helical domain of type I collagen: regions rich in lethal mutations align with collagen binding sites for integrins and proteoglycans. Hum. Mutat. 28, 209-221 (2007).
    • (2007) Hum. Mutat. , vol.28 , pp. 209-221
    • Marini, J.C.1
  • 40
    • 57149106806 scopus 로고    scopus 로고
    • hnRNP H enhances skipping of a nonfunctional exon P3A in CHRNA1 and a mutation disrupting its binding causes congenital myasthenic syndrome
    • Masuda, A. et al. hnRNP H enhances skipping of a nonfunctional exon P3A in CHRNA1 and a mutation disrupting its binding causes congenital myasthenic syndrome. Hum. Mol. Genet. 17, 4022-4035 (2008).
    • (2008) Hum. Mol. Genet. , vol.17 , pp. 4022-4035
    • Masuda, A.1
  • 41
    • 84878661171 scopus 로고    scopus 로고
    • The skeletal phenotype of chondroadherin deficient mice
    • Hessle, L. et al. The skeletal phenotype of chondroadherin deficient mice. PLoS ONE 8, e63080 (2013).
    • (2013) PLoS ONE , vol.8 , pp. e63080
    • Hessle, L.1
  • 42
    • 0035837254 scopus 로고    scopus 로고
    • Closing of the Indonesian seaway as a precursor to east African aridification around 3-4 million years ago
    • Cane, M. A. & Molnar, P. Closing of the Indonesian seaway as a precursor to east African aridification around 3-4 million years ago. Nature 411, 157-162 (2001).
    • (2001) Nature , vol.411 , pp. 157-162
    • Cane, M.A.1    Molnar, P.2
  • 43
    • 36549025068 scopus 로고    scopus 로고
    • Late Miocene vegetation and climate of the Lühe region in Yunnan, southwestern China
    • Xu J.-X., Ferguson D. K., Li, C.-S. & Wang Y.-F. Late Miocene vegetation and climate of the Lühe region in Yunnan, southwestern China. Rev. Palaeobot. Palynol. 148, 36-59 (2008).
    • (2008) Rev. Palaeobot. Palynol. , vol.148 , pp. 36-59
    • Xu, J.-X.1    Ferguson, D.K.2    Li, C.-S.3    Wang, Y.-F.4
  • 44
    • 64649106140 scopus 로고    scopus 로고
    • The Indochinese-Sundaic zoogeographic transition: A description and analysis of terrestrialmammal species distributions
    • Woodruff D. S. & Turner L. M. The Indochinese-Sundaic zoogeographic transition: a description and analysis of terrestrialmammal species distributions. J. Biogeogr. 36, 803-821 (2009).
    • (2009) J. Biogeogr. , vol.36 , pp. 803-821
    • Woodruff, D.S.1    Turner, L.M.2
  • 45
    • 0001851967 scopus 로고
    • Life histories in comparative perspective
    • eds Smuts B. B., et al. Chicago Univ. Press
    • Harvey, P. H., Martin, R. D. & Clutton-Brock, T. H. in Primate Societies (eds Smuts B. B., et al.) Life histories in comparative perspective. 181-196 (Chicago Univ. Press, 1987).
    • (1987) Primate Societies , pp. 181-196
    • Harvey, P.H.1    Martin, R.D.2    Clutton-Brock, T.H.3
  • 46
    • 79961055447 scopus 로고    scopus 로고
    • Patterns of genetic variation within and between Gibbon species
    • Kim, S. K. et al. Patterns of genetic variation within and between Gibbon species. Mol. Biol. Evol. 28, 2211-2218 (2011).
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 2211-2218
    • Kim, S.K.1


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