-
1
-
-
33847076246
-
Genetic and epigenetic regulators of pluripotency
-
Surani, M. A., Hayashi, K. & Hajkova, P. Genetic and epigenetic regulators of pluripotency. Cell 128, 747-762 (2007).
-
(2007)
Cell
, vol.128
, pp. 747-762
-
-
Surani, M.A.1
Hayashi, K.2
Hajkova, P.3
-
2
-
-
33847032960
-
The mammalian epigenome
-
Bernstein, B. E., Meissner, A. & Lander, E. S. The mammalian epigenome. Cell 128, 669-681 (2007).
-
(2007)
Cell
, vol.128
, pp. 669-681
-
-
Bernstein, B.E.1
Meissner, A.2
Lander, E.S.3
-
3
-
-
33847076849
-
Chromatin modifications and their function
-
Kouzarides, T. Chromatin modifications and their function. Cell 128, 693-705 (2007).
-
(2007)
Cell
, vol.128
, pp. 693-705
-
-
Kouzarides, T.1
-
4
-
-
1242316281
-
ChIP-chip: Considerations for the design, analysis, and application of genome-wide chromatin immunoprecipitation experiments
-
Buck, M. J. & Lieb, J. D. ChIP-chip: considerations for the design, analysis, and application of genome-wide chromatin immunoprecipitation experiments. Genomics 83, 349-360 (2004).
-
(2004)
Genomics
, vol.83
, pp. 349-360
-
-
Buck, M.J.1
Lieb, J.D.2
-
5
-
-
10644247621
-
Applications of DNA tiling arrays for whole-genome analysis
-
Mockler, T. C. et al. Applications of DNA tiling arrays for whole-genome analysis. Genomics 85, 1-15 (2005).
-
(2005)
Genomics
, vol.85
, pp. 1-15
-
-
Mockler, T.C.1
-
6
-
-
14644406272
-
Active chromatin domains are defined by acetylation islands revealed by genome-wide mapping
-
Roh, T. Y., Cuddapah, S. & Zhao, K. Active chromatin domains are defined by acetylation islands revealed by genome-wide mapping. Genes Dev. 19, 542-552 (2005).
-
(2005)
Genes Dev
, vol.19
, pp. 542-552
-
-
Roh, T.Y.1
Cuddapah, S.2
Zhao, K.3
-
7
-
-
33645072440
-
sequencing. The race for the $1000 genome
-
Service
-
Service, R. F. Gene sequencing. The race for the $1000 genome. Science 311, 1544-1546 (2006).
-
(2006)
Science
, vol.311
, pp. 1544-1546
-
-
Gene, R.F.1
-
8
-
-
24944484633
-
Niche-independent symmetrical self-renewal of a mammalian tissue stem cell
-
Conti, L. et al. Niche-independent symmetrical self-renewal of a mammalian tissue stem cell. PLoS Biol. 3, e283 (2005).
-
(2005)
PLoS Biol
, vol.3
-
-
Conti, L.1
-
9
-
-
33646070846
-
A bivalent chromatin structure marks key developmental genes in embryonic stem cells
-
Bernstein, B. E. et al. A bivalent chromatin structure marks key developmental genes in embryonic stem cells. Cell 125, 315-326 (2006).
-
(2006)
Cell
, vol.125
, pp. 315-326
-
-
Bernstein, B.E.1
-
10
-
-
8844265508
-
Epigenetic regulation of cellular memory by the Polycomb and Trithorax group proteins
-
Ringrose, L. & Paro, R. Epigenetic regulation of cellular memory by the Polycomb and Trithorax group proteins. Annu. Rev. Genet. 38, 413-443 (2004).
-
(2004)
Annu. Rev. Genet
, vol.38
, pp. 413-443
-
-
Ringrose, L.1
Paro, R.2
-
11
-
-
33847084602
-
Genome regulation by polycomb and trithorax proteins
-
Schuettengruber, B., Chourrout, D., Vervoort, M., Leblanc, B. & Cavalli, G. Genome regulation by polycomb and trithorax proteins. Cell 128, 735-745 (2007).
-
(2007)
Cell
, vol.128
, pp. 735-745
-
-
Schuettengruber, B.1
Chourrout, D.2
Vervoort, M.3
Leblanc, B.4
Cavalli, G.5
-
12
-
-
33646872978
-
Chromatin signatures of pluripotent cell lines
-
Azuara, V. et al. Chromatin signatures of pluripotent cell lines. Nature Cell Biol. 8, 532-538 (2006).
-
(2006)
Nature Cell Biol
, vol.8
, pp. 532-538
-
-
Azuara, V.1
-
13
-
-
31944432339
-
A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters
-
Saxonov, S., Berg, P. & Brutlag, D. L. A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters. Proc. Natl Acad. Sci. USA 103, 1412-1417 (2006).
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 1412-1417
-
-
Saxonov, S.1
Berg, P.2
Brutlag, D.L.3
-
14
-
-
34047116826
-
Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome
-
Weber, M. et al. Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome. Nature Genet. 39, 457-466 (2007).
-
(2007)
Nature Genet
, vol.39
, pp. 457-466
-
-
Weber, M.1
-
15
-
-
19944430797
-
Genomic maps and comparative analysis of histone modifications in human and mouse
-
Bernstein, B. E. et al. Genomic maps and comparative analysis of histone modifications in human and mouse. Cell 120, 169-181 (2005).
-
(2005)
Cell
, vol.120
, pp. 169-181
-
-
Bernstein, B.E.1
-
16
-
-
23844519339
-
A high-resolution map of active promoters in the human genome
-
Kim, T. H. et al. A high-resolution map of active promoters in the human genome. Nature 436, 876-880 (2005).
-
(2005)
Nature
, vol.436
, pp. 876-880
-
-
Kim, T.H.1
-
17
-
-
33646882068
-
Polycomb complexes repress developmental regulators in murine embryonic stem cells
-
Boyer, L. A. et al. Polycomb complexes repress developmental regulators in murine embryonic stem cells. Nature 441, 349-353 (2006).
-
(2006)
Nature
, vol.441
, pp. 349-353
-
-
Boyer, L.A.1
-
18
-
-
33646865180
-
Control of developmental regulators by polycomb in human embryonic stem cells
-
Lee, T. I. et al. Control of developmental regulators by polycomb in human embryonic stem cells. Cell 125, 301-313 (2006).
-
(2006)
Cell
, vol.125
, pp. 301-313
-
-
Lee, T.I.1
-
19
-
-
33745604636
-
Suz12 binds to silenced regions of the genome in a cell-type-specific manner
-
Squazzo, S. L. et al. Suz12 binds to silenced regions of the genome in a cell-type-specific manner. Genome Res. 16, 890-900 (2006).
-
(2006)
Genome Res
, vol.16
, pp. 890-900
-
-
Squazzo, S.L.1
-
20
-
-
34248169728
-
The Polycomb Group protein Suz12 is required for Embryonic Stem Cell differentiation
-
Pasini, D., Bracken, A. P., Hansen, J. B., Capillo, M. & Helin, K. The Polycomb Group protein Suz12 is required for Embryonic Stem Cell differentiation. Mol. Cell. Biol. 27, 3769-3779 (2007).
-
(2007)
Mol. Cell. Biol
, vol.27
, pp. 3769-3779
-
-
Pasini, D.1
Bracken, A.P.2
Hansen, J.B.3
Capillo, M.4
Helin, K.5
-
21
-
-
32344450824
-
Genomic DNA methylation: The mark and its mediators
-
Klose, R. J. & Bird, A. P. Genomic DNA methylation: the mark and its mediators. Trends Biochem. Sci. 31, 89-97 (2006).
-
(2006)
Trends Biochem. Sci
, vol.31
, pp. 89-97
-
-
Klose, R.J.1
Bird, A.P.2
-
22
-
-
0036682529
-
Molecular mechanisms governing Pcdh-γ gene expression: Evidence for a multiple promoter and cis-alternative splicing model
-
Wang, X., Su, H. & Bradley, A. Molecular mechanisms governing Pcdh-γ gene expression: evidence for a multiple promoter and cis-alternative splicing model. Genes Dev. 16, 1890-1905 (2002).
-
(2002)
Genes Dev
, vol.16
, pp. 1890-1905
-
-
Wang, X.1
Su, H.2
Bradley, A.3
-
23
-
-
24644519490
-
The transcriptional landscape of the mammalian genome
-
Carninci, P. et al. The transcriptional landscape of the mammalian genome. Science 309, 1559-1563 (2005).
-
(2005)
Science
, vol.309
, pp. 1559-1563
-
-
Carninci, P.1
-
24
-
-
0031745543
-
Aryl-hydrocarbon receptor is an inhibitory regulator of lipid synthesis and of commitment to adipogenesis
-
Alexander, D. L., Ganem, L. G., Fernandez-Salguero, P., Gonzalez, F. & Jefcoate, C. R. Aryl-hydrocarbon receptor is an inhibitory regulator of lipid synthesis and of commitment to adipogenesis. J. Cell Sci. 111, 3311-3322 (1998).
-
(1998)
J. Cell Sci
, vol.111
, pp. 3311-3322
-
-
Alexander, D.L.1
Ganem, L.G.2
Fernandez-Salguero, P.3
Gonzalez, F.4
Jefcoate, C.R.5
-
25
-
-
3442889058
-
Primary mouse embryonic fibroblasts: A model of mesenchymal cartilage formation
-
Lengner, C. J. et al. Primary mouse embryonic fibroblasts: a model of mesenchymal cartilage formation. J. Cell. Physiol. 200, 327-333 (2004).
-
(2004)
J. Cell. Physiol
, vol.200
, pp. 327-333
-
-
Lengner, C.J.1
-
26
-
-
33746737393
-
Osteogenic differentiation of mouse embryonic stem cells and mouse embryonic fibroblasts in a three-dimensional self-assembling peptide scaffold
-
Garreta, E., Genove, E., Borros, S. & Semino, C. E. Osteogenic differentiation of mouse embryonic stem cells and mouse embryonic fibroblasts in a three-dimensional self-assembling peptide scaffold. Tissue Eng. 12, 2215-2227 (2006).
-
(2006)
Tissue Eng
, vol.12
, pp. 2215-2227
-
-
Garreta, E.1
Genove, E.2
Borros, S.3
Semino, C.E.4
-
27
-
-
0242321829
-
The glial identity of neural stem cells
-
Doetsch, F. The glial identity of neural stem cells. Nature Neurosci. 6, 1127-1134 (2003).
-
(2003)
Nature Neurosci
, vol.6
, pp. 1127-1134
-
-
Doetsch, F.1
-
28
-
-
33745480963
-
Specific microRNAs modulate embryonic stem cell-derived neurogenesis
-
Krichevsky, A. M., Sonntag, K. C., Isacson, O. & Kosik, K. S. Specific microRNAs modulate embryonic stem cell-derived neurogenesis. Stem Cells 24, 857-864 (2006).
-
(2006)
Stem Cells
, vol.24
, pp. 857-864
-
-
Krichevsky, A.M.1
Sonntag, K.C.2
Isacson, O.3
Kosik, K.S.4
-
29
-
-
27144458417
-
Dimethylation of histone H3 at lysine 36 demarcates regulatory and nonregulatory chromatin genome-wide
-
Rao, B., Shibata, Y., Strahl, B. D. & Lieb, J. D. Dimethylation of histone H3 at lysine 36 demarcates regulatory and nonregulatory chromatin genome-wide. Mol. Cell. Biol. 25, 9447-9459 (2005).
-
(2005)
Mol. Cell. Biol
, vol.25
, pp. 9447-9459
-
-
Rao, B.1
Shibata, Y.2
Strahl, B.D.3
Lieb, J.D.4
-
30
-
-
20444380510
-
Spatial distribution of di- and tri-methyl lysine 36 of histone H3 at active genes
-
Bannister, A. J. et al. Spatial distribution of di- and tri-methyl lysine 36 of histone H3 at active genes. J. Biol. Chem. 280, 17732-17736 (2005).
-
(2005)
J. Biol. Chem
, vol.280
, pp. 17732-17736
-
-
Bannister, A.J.1
-
31
-
-
33846905189
-
Distinctive signatures of histone methylation in transcribed coding and noncoding human β-globin sequences
-
Kim, A., Kiefer, C. M. & Dean, A. Distinctive signatures of histone methylation in transcribed coding and noncoding human β-globin sequences. Mol. Cell. Biol. 27, 1271-1279 (2007).
-
(2007)
Mol. Cell. Biol
, vol.27
, pp. 1271-1279
-
-
Kim, A.1
Kiefer, C.M.2
Dean, A.3
-
32
-
-
33845451555
-
Profile of histone lysine methylation across transcribed mammalian chromatin
-
Vakoc, C. R., Sachdeva, M. M., Wang, H. & Blobel, G. A. Profile of histone lysine methylation across transcribed mammalian chromatin. Mol. Cell. Biol. 26, 9185-9195 (2006).
-
(2006)
Mol. Cell. Biol
, vol.26
, pp. 9185-9195
-
-
Vakoc, C.R.1
Sachdeva, M.M.2
Wang, H.3
Blobel, G.A.4
-
33
-
-
33847070442
-
The role of chromatin during transcription
-
Li, B., Carey, M. & Workman, J. L. The role of chromatin during transcription. Cell 128, 707-719 (2007).
-
(2007)
Cell
, vol.128
, pp. 707-719
-
-
Li, B.1
Carey, M.2
Workman, J.L.3
-
34
-
-
0344953586
-
Mutations in SOX2 cause anophthalmia
-
Fantes, J. et al. Mutations in SOX2 cause anophthalmia. Nature Genet. 33, 461-463 (2003).
-
(2003)
Nature Genet
, vol.33
, pp. 461-463
-
-
Fantes, J.1
-
35
-
-
33847185603
-
A screen for nuclear transcripts identifies two linked noncoding RNAs associated with SC35 splicing domains
-
Hutchinson, J. N. et al. A screen for nuclear transcripts identifies two linked noncoding RNAs associated with SC35 splicing domains. BMC Genomics 8, 39 (2007).
-
(2007)
BMC Genomics
, vol.8
, pp. 39
-
-
Hutchinson, J.N.1
-
36
-
-
4644253753
-
A large imprinted microRNA gene cluster at the mouse Dlk1-Gtl2 domain
-
Seitz, H. et al. A large imprinted microRNA gene cluster at the mouse Dlk1-Gtl2 domain. Genome Res. 14, 1741-1748 (2004).
-
(2004)
Genome Res
, vol.14
, pp. 1741-1748
-
-
Seitz, H.1
-
37
-
-
10944254152
-
Transcription and processing of human microRNA precursors
-
Cullen, B. R. Transcription and processing of human microRNA precursors. Mol. Cell 16, 861-865 (2004).
-
(2004)
Mol. Cell
, vol.16
, pp. 861-865
-
-
Cullen, B.R.1
-
38
-
-
33847037497
-
Noncoding RNAs and gene silencing
-
Zaratiegui, M., Irvine, D. V. & Martienssen, R. A. Noncoding RNAs and gene silencing. Cell 128, 763-776 (2007).
-
(2007)
Cell
, vol.128
, pp. 763-776
-
-
Zaratiegui, M.1
Irvine, D.V.2
Martienssen, R.A.3
-
39
-
-
26944502707
-
RNAi-directed assembly of heterochromatin in fission yeast
-
Verdel, A. & Moazed, D. RNAi-directed assembly of heterochromatin in fission yeast. FEBS Lett. 579, 5872-5878 (2005).
-
(2005)
FEBS Lett
, vol.579
, pp. 5872-5878
-
-
Verdel, A.1
Moazed, D.2
-
40
-
-
15444372817
-
The profile of repeat-associated histone lysine methylation states in the mouse epigenome
-
Martens, J. H. et al. The profile of repeat-associated histone lysine methylation states in the mouse epigenome. EMBO J. 24, 800-812 (2005).
-
(2005)
EMBO J
, vol.24
, pp. 800-812
-
-
Martens, J.H.1
-
41
-
-
0142092446
-
Structure and expression of mobile ETnII retroelements and their coding-competent MusD relatives in the mouse
-
Baust, C. et al. Structure and expression of mobile ETnII retroelements and their coding-competent MusD relatives in the mouse. J. Virol. 77, 11448-11458 (2003).
-
(2003)
J. Virol
, vol.77
, pp. 11448-11458
-
-
Baust, C.1
-
42
-
-
1842665566
-
RNAi and expression of retrotransposons MuERV-L and IAP in preimplantation mouse embryos
-
Svoboda, P. et al. RNAi and expression of retrotransposons MuERV-L and IAP in preimplantation mouse embryos. Dev. Biol. 269, 276-285 (2004).
-
(2004)
Dev. Biol
, vol.269
, pp. 276-285
-
-
Svoboda, P.1
-
43
-
-
27644525713
-
Antisense transcription and heterochromatin at the DM1 CTG repeats are constrained by CTCF
-
Cho, D. H. et al. Antisense transcription and heterochromatin at the DM1 CTG repeats are constrained by CTCF. Mol. Cell 20, 483-489 (2005).
-
(2005)
Mol. Cell
, vol.20
, pp. 483-489
-
-
Cho, D.H.1
-
44
-
-
20944445545
-
The human β-globin locus control region can silence as well as activate gene expression
-
Feng, Y. Q. et al. The human β-globin locus control region can silence as well as activate gene expression. Mol. Cell. Biol. 25, 3864-3874 (2005).
-
(2005)
Mol. Cell. Biol
, vol.25
, pp. 3864-3874
-
-
Feng, Y.Q.1
-
45
-
-
34250160167
-
Mechanisms regulating imprinted genes in clusters
-
Edwards, C. A. & Ferguson-Smith, A. C. Mechanisms regulating imprinted genes in clusters. Curr. Opin. Cell Biol. 19, 281-289 (2007).
-
(2007)
Curr. Opin. Cell Biol
, vol.19
, pp. 281-289
-
-
Edwards, C.A.1
Ferguson-Smith, A.C.2
-
46
-
-
33846972618
-
Differential histone modifications mark mouse imprinting control regions during spermatogenesis
-
Delaval, K. et al. Differential histone modifications mark mouse imprinting control regions during spermatogenesis. EMBO J. 26, 720-729 (2007).
-
(2007)
EMBO J
, vol.26
, pp. 720-729
-
-
Delaval, K.1
-
47
-
-
34047093266
-
Convergent evolution of genomic imprinting in plants and mammals
-
Feil, R. & Berger, F. Convergent evolution of genomic imprinting in plants and mammals. Trends Genet. 23, 192-199 (2007).
-
(2007)
Trends Genet
, vol.23
, pp. 192-199
-
-
Feil, R.1
Berger, F.2
-
48
-
-
0037168586
-
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences
-
Strausberg, R. L. et al. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proc. Natl Acad. Sci. USA 99, 16899-16903 (2002).
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 16899-16903
-
-
Strausberg, R.L.1
|