-
1
-
-
71049176982
-
Genome 10K: A proposal to obtain whole-genome sequence for 10,000 vertebrate species
-
Genome 10K Community Sci. 2009. Genome 10K: a proposal to obtain whole-genome sequence for 10,000 vertebrate species. J. Hered. 100(6):659-74
-
(2009)
J. Hered.
, vol.100
, Issue.6
, pp. 659-674
-
-
Genome 10K Community Sci.1
-
2
-
-
70449120145
-
10,000 genomes to come
-
Hayden EC. 2009. 10,000 genomes to come. Nature 462(7269):21
-
(2009)
Nature
, vol.462
, Issue.7269
, pp. 21
-
-
Hayden, E.C.1
-
3
-
-
70449348267
-
No genome left behind
-
Pennisi E. 2009. No genome left behind. Science 326(5954):794-95
-
(2009)
Science
, vol.326
, Issue.5954
, pp. 794-795
-
-
Pennisi, E.1
-
4
-
-
84906944019
-
Tissue sampling methods and standards for vertebrate genomics
-
Wong PB, Wiley EO, Johnson WE, Ryder OA, O'Brien SJ, et al. 2012. Tissue sampling methods and standards for vertebrate genomics. GigaScience 1:8
-
(2012)
GigaScience
, vol.1
, pp. 8
-
-
Wong, P.B.1
Wiley, E.O.2
Johnson, W.E.3
Ryder, O.A.4
O'Brien, S.J.5
-
5
-
-
84857893016
-
GAGE: A critical evaluation of genome assemblies and assembly algorithms
-
Salzberg SL, PhillippyAM,Zimin A, Puiu D, MagocT, et al. 2012.GAGE:a critical evaluation of genome assemblies and assembly algorithms. Genome Res. 22(3):557-67
-
(2012)
Genome Res.
, vol.22
, Issue.3
, pp. 557-567
-
-
Salzberg, S.L.1
Phillippy, A.M.2
Zimin, A.3
Puiu, D.4
Magoc, T.5
-
6
-
-
84859898660
-
A beginner's guide to eukaryotic genome annotation
-
Yandell M, Ence D. 2012. A beginner's guide to eukaryotic genome annotation. Nat. Rev. Genet. 13(5):329-42
-
(2012)
Nat. Rev. Genet.
, vol.13
, Issue.5
, pp. 329-342
-
-
Yandell, M.1
Ence, D.2
-
7
-
-
83055181941
-
Assemblathon 1: A competitive assessment of de novo short read assembly methods
-
Earl D, Bradnam K, St. John J, Darling A, Lin D, et al. 2011. Assemblathon 1: a competitive assessment of de novo short read assembly methods. Genome Res. 21(12):2224-41
-
(2011)
Genome Res.
, vol.21
, Issue.12
, pp. 2224-2241
-
-
Earl, D.1
Bradnam, K.2
St John, J.3
Darling, A.4
Lin, D.5
-
8
-
-
84991528460
-
Assemblathon 2: Evaluating de novo methods of genome assembly in three vertebrate species
-
Bradnam KR, Fass JN, Alexandrov A, Baranay P, Bechner M, et al. 2013. Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species. GigaScience 2(1):10
-
(2013)
GigaScience
, vol.2
, Issue.1
, pp. 10
-
-
Bradnam, K.R.1
Fass, J.N.2
Alexandrov, A.3
Baranay, P.4
Bechner, M.5
-
9
-
-
85040013391
-
Sequencing the tree of life
-
April24
-
Azvolinsky A. 2014. Sequencing the tree of life. The Scientist, April 24
-
(2014)
The Scientist
-
-
Azvolinsky, A.1
-
10
-
-
79951475133
-
A decade's perspective on DNA sequencing technology
-
Mardis ER. 2011. A decade's perspective on DNA sequencing technology. Nature 470(7333):198-203
-
(2011)
Nature
, vol.470
, Issue.7333
, pp. 198-203
-
-
Mardis, E.R.1
-
11
-
-
80052028523
-
The real cost of sequencing: Higher than you think!
-
Sboner A, Mu XJ, Greenbaum D, Auerbach RK, Gerstein MB. 2011. The real cost of sequencing: higher than you think! Genome Biol. 12(8):125
-
(2011)
Genome Biol.
, vol.12
, Issue.8
, pp. 125
-
-
Sboner, A.1
Mu, X.J.2
Greenbaum, D.3
Auerbach, R.K.4
Gerstein, M.B.5
-
12
-
-
84897908258
-
The $1000 genome
-
Hayden EC. 2014. The $1000 genome. Nature 507(7492):294-95
-
(2014)
Nature
, vol.507
, Issue.7492
, pp. 294-295
-
-
Hayden, E.C.1
-
13
-
-
75149155568
-
The sequence and de novo assembly of the giant panda genome
-
Li R, Fan W, Tian G, Zhu H, He L, et al. 2010. The sequence and de novo assembly of the giant panda genome. Nature 463(7279):311-17
-
(2010)
Nature
, vol.463
, Issue.7279
, pp. 311-317
-
-
Li, R.1
Fan, W.2
Tian, G.3
Zhu, H.4
He, L.5
-
14
-
-
84892160187
-
Elephant shark genome provides unique insights into gnathostome evolution
-
Venkatesh B, Lee AP, Ravi V, Maurya AK, Lian MM, et al. 2014. Elephant shark genome provides unique insights into gnathostome evolution. Nature 505(7482):174-79
-
(2014)
Nature
, vol.505
, Issue.7482
, pp. 174-179
-
-
Venkatesh, B.1
Lee, A.P.2
Ravi, V.3
Maurya, A.K.4
Lian, M.M.5
-
15
-
-
84891372280
-
Minke whale genome and aquatic adaptation in cetaceans
-
Yim H-S, Cho YS, Guang X, Kang SG, Jeong J-Y, et al. 2014. Minke whale genome and aquatic adaptation in cetaceans. Nat. Genet. 46(1):88-92
-
(2014)
Nat. Genet.
, vol.46
, Issue.1
, pp. 88-92
-
-
Yim, H.-S.1
Cho, Y.S.2
Guang, X.3
Kang, S.G.4
Jeong, J.-Y.5
-
16
-
-
84865192446
-
The fishes of Genome 10K
-
Bernardi G, Wiley EO, Mansour H, Miller MR, Orti G, et al. 2012. The fishes of Genome 10K. Mar. Genomics 7:3-6
-
(2012)
Mar. Genomics
, vol.7
, pp. 3-6
-
-
Bernardi, G.1
Wiley, E.O.2
Mansour, H.3
Miller, M.R.4
Orti, G.5
-
17
-
-
77956279237
-
Assembly of large genomes using second-generation sequencing
-
Schatz MC, Delcher AL, Salzberg SL. 2010. Assembly of large genomes using second-generation sequencing. Genome Res. 20:1165-73
-
(2010)
Genome Res.
, vol.20
, pp. 1165-1173
-
-
Schatz, M.C.1
Delcher, A.L.2
Salzberg, S.L.3
-
19
-
-
43449123631
-
Genome analysis of the platypus reveals unique signatures of evolution
-
Warren WC, Hillier LW,Marshall Graves JA, Birney E, Ponting CP, et al. 2008. Genome analysis of the platypus reveals unique signatures of evolution. Nature 453(7192):175-83
-
(2008)
Nature
, vol.453
, Issue.7192
, pp. 175-183
-
-
Warren, W.C.1
Hillier, L.W.2
Marshall Graves, J.A.3
Birney, E.4
Ponting, C.P.5
-
20
-
-
70350714429
-
Every genome sequence needs a good map
-
Lewin HA, Larkin DM, Pontius J,O'Brien SJ. 2009. Every genome sequence needs a good map. Genome Res. 19(11):1925-28
-
(2009)
Genome Res.
, vol.19
, Issue.11
, pp. 1925-1928
-
-
Lewin, H.A.1
Larkin, D.M.2
Pontius, J.3
O'Brien, S.J.4
-
21
-
-
84874194145
-
Sequence assembly demystified
-
Nagarajan N, Pop M. 2013. Sequence assembly demystified. Nat. Rev. Genet. 14(3):157-67
-
(2013)
Nat. Rev. Genet.
, vol.14
, Issue.3
, pp. 157-167
-
-
Nagarajan, N.1
Pop, M.2
-
22
-
-
28944439470
-
Beware of mis-assembled genomes
-
Salzberg SL, Yorke JA. 2005. Beware of mis-assembled genomes. Bioinformatics 21(24):4320-21
-
(2005)
Bioinformatics
, vol.21
, Issue.24
, pp. 4320-4321
-
-
Salzberg, S.L.1
Yorke, J.A.2
-
23
-
-
84922584295
-
Comprehensive variation discovery in single human genomes
-
Weisenfeld NI, Yin S, Sharpe T, Lau B, Hegarty R, et al. 2014. Comprehensive variation discovery in single human genomes. Nat. Genet. 46:1350-55
-
(2014)
Nat. Genet.
, vol.46
, pp. 1350-1355
-
-
Weisenfeld, N.I.1
Yin, S.2
Sharpe, T.3
Lau, B.4
Hegarty, R.5
-
24
-
-
84874322149
-
ALE: A generic assembly likelihood evaluation framework for assessing the accuracy of genome and metagenome assemblies
-
Clark SC, Egan R, Frazier PI, Wang Z. 2013. ALE: a generic assembly likelihood evaluation framework for assessing the accuracy of genome and metagenome assemblies. Bioinformatics 29(4):435-43
-
(2013)
Bioinformatics
, vol.29
, Issue.4
, pp. 435-443
-
-
Clark, S.C.1
Egan, R.2
Frazier, P.I.3
Wang, Z.4
-
25
-
-
84882295406
-
De novo likelihood-based measures for comparing genome assemblies
-
Ghodsi M, Hill CM, Astrovskaya I, Lin H, Sommer DD, et al. 2013. De novo likelihood-based measures for comparing genome assemblies. BMC Res. Notes 6:334
-
(2013)
BMC Res. Notes
, vol.6
, pp. 334
-
-
Ghodsi, M.1
Hill, C.M.2
Astrovskaya, I.3
Lin, H.4
Sommer, D.D.5
-
26
-
-
84872968454
-
CGAL: Computing genome assembly likelihoods
-
Rahman A, Pachter L. 2013. CGAL: computing genome assembly likelihoods. Genome Biol. 14(1):R8
-
(2013)
Genome Biol.
, vol.14
, Issue.1
, pp. R8
-
-
Rahman, A.1
Pachter, L.2
-
27
-
-
84902553599
-
Efficient de novo assembly of large and complex genomes by massively parallel sequencing of fosmid pools
-
Alexeyenko A, Nystedt B, Vezzi F, Sherwood E, Ye R, et al. 2014. Efficient de novo assembly of large and complex genomes by massively parallel sequencing of fosmid pools. BMC Genomics 15(1):439
-
(2014)
BMC Genomics
, vol.15
, Issue.1
, pp. 439
-
-
Alexeyenko, A.1
Nystedt, B.2
Vezzi, F.3
Sherwood, E.4
Ye, R.5
-
28
-
-
84897965254
-
Reconstructing complex regions of genomes using long-read sequencing technology
-
Huddleston J, Ranade S, Malig M, Antonacci F, Chaisson M, et al. 2014. Reconstructing complex regions of genomes using long-read sequencing technology. Genome Res. 24(4):688-96
-
(2014)
Genome Res.
, vol.24
, Issue.4
, pp. 688-696
-
-
Huddleston, J.1
Ranade, S.2
Malig, M.3
Antonacci, F.4
Chaisson, M.5
-
29
-
-
84898654757
-
Whole-genome haplotyping using long reads and statistical methods
-
Kuleshov V, Xie D, Chen R, Pushkarev D, Ma Z, et al. 2014. Whole-genome haplotyping using long reads and statistical methods. Nat. Biotechnol. 32(3):261-66
-
(2014)
Nat. Biotechnol.
, vol.32
, Issue.3
, pp. 261-266
-
-
Kuleshov, V.1
Xie, D.2
Chen, R.3
Pushkarev, D.4
Ma, Z.5
-
30
-
-
84880798154
-
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
-
Chin C-S, Alexander DH, Marks P, Klammer AA, Drake J, et al. 2013. Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data. Nat. Methods 10:563-69
-
(2013)
Nat. Methods
, vol.10
, pp. 563-569
-
-
Chin, C.-S.1
Alexander, D.H.2
Marks, P.3
Klammer, A.A.4
Drake, J.5
-
31
-
-
84883664726
-
Reducing assembly complexity of microbial genomes with single-molecule sequencing
-
Koren S, Harhay GP, Smith TP, Bono JL, Harhay DM, et al. 2013. Reducing assembly complexity of microbial genomes with single-molecule sequencing. Genome Biol. 14(9):R101
-
(2013)
Genome Biol.
, vol.14
, Issue.9
, pp. R101
-
-
Koren, S.1
Harhay, G.P.2
Smith, T.P.3
Bono, J.L.4
Harhay, D.M.5
-
33
-
-
84863651532
-
Hybrid error correction and de novo assembly of single-molecule sequencing reads
-
Koren S, Schatz MC,Walenz BP, Martin J, Howard JT, et al. 2012. Hybrid error correction and de novo assembly of single-molecule sequencing reads. Nat. Biotechnol. 30(7):693-700
-
(2012)
Nat. Biotechnol.
, vol.30
, Issue.7
, pp. 693-700
-
-
Koren, S.1
Schatz, M.C.2
Walenz, B.P.3
Martin, J.4
Howard, J.T.5
-
34
-
-
84871447495
-
Probing meiotic recombination and aneuploidy of single sperm cells by whole-genome sequencing
-
Lu S, Zong C, Fan W, Yang M, Li J, et al. 2012. Probing meiotic recombination and aneuploidy of single sperm cells by whole-genome sequencing. Science 338(6114):1627-30
-
(2012)
Science
, vol.338
, Issue.6114
, pp. 1627-1630
-
-
Lu, S.1
Zong, C.2
Fan, W.3
Yang, M.4
Li, J.5
-
35
-
-
84864258558
-
Genome-wide single-cell analysis of recombination activity and de novo mutation rates in human sperm
-
Wang J, Fan HC, Behr B, Quake SR. 2012. Genome-wide single-cell analysis of recombination activity and de novo mutation rates in human sperm. Cell 150(2):402-12
-
(2012)
Cell
, vol.150
, Issue.2
, pp. 402-412
-
-
Wang, J.1
Fan, H.C.2
Behr, B.3
Quake, S.R.4
-
36
-
-
84877156149
-
Sequencing of isolated sperm cells for direct haplotyping of a human genome
-
Kirkness EF, Grindberg RV, Yee-Greenbaum J, Marshall CR, Scherer SW, et al. 2013. Sequencing of isolated sperm cells for direct haplotyping of a human genome. Genome Res. 23:826-32
-
(2013)
Genome Res.
, vol.23
, pp. 826-832
-
-
Kirkness, E.F.1
Grindberg, R.V.2
Yee-Greenbaum, J.3
Marshall, C.R.4
Scherer, S.W.5
-
37
-
-
84873595859
-
Sequencing and automated whole-genome optical mapping of the genome of a domestic goat (Capra hircus)
-
Dong Y, Xie M, Jiang Y, Xiao N, Du X, et al. 2013. Sequencing and automated whole-genome optical mapping of the genome of a domestic goat (Capra hircus). Nat. Biotechnol. 31(2):135-41
-
(2013)
Nat. Biotechnol.
, vol.31
, Issue.2
, pp. 135-141
-
-
Dong, Y.1
Xie, M.2
Jiang, Y.3
Xiao, N.4
Du, X.5
-
38
-
-
84864883566
-
Genome mapping on nanochannel arrays for structural variation analysis and sequence assembly
-
Lam ET, Hastie A, Lin C, Ehrlich D, Das SK, et al. 2012. Genome mapping on nanochannel arrays for structural variation analysis and sequence assembly. Nat. Biotechnol. 30(8):771-76
-
(2012)
Nat. Biotechnol.
, vol.30
, Issue.8
, pp. 771-776
-
-
Lam, E.T.1
Hastie, A.2
Lin, C.3
Ehrlich, D.4
Das, S.K.5
-
39
-
-
84873545544
-
Rapid genome mapping in nanochannel arrays for highly complete and accurate de novo sequence assembly of the complex Aegilops tauschii genome
-
Hastie AR, Dong L, Smith A, Finklestein J, Lam ET, et al. 2013. Rapid genome mapping in nanochannel arrays for highly complete and accurate de novo sequence assembly of the complex Aegilops tauschii genome. PLOS ONE 8(2):e55864
-
(2013)
PLOS ONE
, vol.8
, Issue.2
-
-
Hastie, A.R.1
Dong, L.2
Smith, A.3
Finklestein, J.4
Lam, E.T.5
-
40
-
-
84864476435
-
AGORA: Assembly guided by optical restriction alignment
-
Lin HC, Goldstein S, Mendelowitz L, Zhou S, Wetzel J, et al. 2012.AGORA: assembly guided by optical restriction alignment. BMC Bioinform. 13(1):189
-
(2012)
BMC Bioinform.
, vol.13
, Issue.1
, pp. 189
-
-
Lin, H.C.1
Goldstein, S.2
Mendelowitz, L.3
Zhou, S.4
Wetzel, J.5
-
41
-
-
84883798077
-
L-RNA-Scaffolder: Scaffolding genomes with transcripts
-
Xue W, Li J-T, Zhu Y-P, Hou G-Y, Kong X-F, et al. 2013. L-RNA-Scaffolder: scaffolding genomes with transcripts. BMC Genomics 14(1):604
-
(2013)
BMC Genomics
, vol.14
, Issue.1
, pp. 604
-
-
Xue, W.1
Li, J.-T.2
Zhu, Y.-P.3
Hou, G.-Y.4
Kong, X.-F.5
-
42
-
-
84873175933
-
Reference-assisted chromosome assembly
-
Kim J, Larkin DM, Cai Q, Asan, Zhang Y, et al. 2013. Reference-assisted chromosome assembly. PNAS 110(5):1785-90
-
(2013)
PNAS
, vol.110
, Issue.5
, pp. 1785-1790
-
-
Kim, J.1
Larkin, D.M.2
Cai, Q.3
Asan4
Zhang, Y.5
-
43
-
-
84865790047
-
An integrated encyclopedia of DNA elements in the human genome
-
Bernstein BE, Birney E, Dunham I, Green ED, Gunter C, Snyder M. 2012. An integrated encyclopedia of DNA elements in the human genome. Nature 489(7414):57-74
-
(2012)
Nature
, vol.489
, Issue.7414
, pp. 57-74
-
-
Bernstein, B.E.1
Birney, E.2
Dunham, I.3
Green, E.D.4
Gunter, C.5
Snyder, M.6
-
44
-
-
84883851164
-
Comparing a few SNP calling algorithms using low-coverage sequencing data
-
Yu X, Sun S. 2013. Comparing a few SNP calling algorithms using low-coverage sequencing data. BMC Bioinform. 14(1):274
-
(2013)
BMC Bioinform.
, vol.14
, Issue.1
, pp. 274
-
-
Yu, X.1
Sun, S.2
-
45
-
-
84888871954
-
Assessment of transcript reconstruction methods for RNA-seq
-
Steijger T, Abril JF, Engström PG, Kokocinski F, Akerman M, et al. 2013. Assessment of transcript reconstruction methods for RNA-seq. Nat. Methods 10(12):1177-84
-
(2013)
Nat. Methods
, vol.10
, Issue.12
, pp. 1177-1184
-
-
Steijger, T.1
Abril, J.F.2
Engström, P.G.3
Kokocinski, F.4
Akerman, M.5
-
46
-
-
38849145798
-
Targeted discovery of novel human exons by comparative genomics
-
Siepel A, DiekhansM, Brejová B, Langton L, Stevens M, et al. 2007. Targeted discovery of novel human exons by comparative genomics. Genome Res. 17(12):1763-73
-
(2007)
Genome Res.
, vol.17
, Issue.12
, pp. 1763-1773
-
-
Siepel, A.1
Diekhans, M.2
Brejová, B.3
Langton, L.4
Stevens, M.5
-
47
-
-
84880055720
-
Comparative genomics as a tool to understand evolution and disease
-
Alföldi J, Lindblad-Toh K. 2013. Comparative genomics as a tool to understand evolution and disease. Genome Res. 23(7):1063-68
-
(2013)
Genome Res.
, vol.23
, Issue.7
, pp. 1063-1068
-
-
Alföldi, J.1
Lindblad-Toh, K.2
-
48
-
-
84899633396
-
Defining functionalDNAelements in the human genome
-
KellisM, Wold B, Snyder MP, Bernstein BE, Kundaje A, et al. 2014. Defining functionalDNAelements in the human genome. PNAS 111(17):6131-38
-
(2014)
PNAS
, vol.111
, Issue.17
, pp. 6131-6138
-
-
Kellis, M.1
Wold, B.2
Snyder, M.P.3
Bernstein, B.E.4
Kundaje, A.5
-
49
-
-
84891768365
-
Ensembl 2014
-
Flicek P, Amode MR, Barrell D, Beal K, Billis K, et al. 2014. Ensembl 2014. Nucleic Acids Res. 42(Database Issue):D749-55
-
(2014)
Nucleic Acids Res.
, vol.42
, Issue.Database Issue
, pp. D749-D755
-
-
Flicek, P.1
Amode, M.R.2
Barrell, D.3
Beal, K.4
Billis, K.5
-
50
-
-
84891771466
-
The UCSC genome browser database: 2014 update
-
Karolchik D, Barber GP, Casper J, Clawson H, Cline MS, et al. 2014. The UCSC genome browser database: 2014 update. Nucleic Acids Res. 42(Database Issue):D764-70
-
(2014)
Nucleic Acids Res.
, vol.42
, Issue.Database Issue
, pp. D764-D770
-
-
Karolchik, D.1
Barber, G.P.2
Casper, J.3
Clawson, H.4
Cline, M.S.5
-
51
-
-
84923172781
-
Alignathon: A competitive assessment of whole genome alignment methods
-
Earl D, Nguyen NK, Hickey G, Nguyen N, Harris RS, et al. 2014. Alignathon : a competitive assessment of whole genome alignment methods. bioRxiv. doi: http://dx.doi.org/10.1101/003285
-
(2014)
bioRxiv
-
-
Earl, D.1
Nguyen, N.K.2
Hickey, G.3
Nguyen, N.4
Harris, R.S.5
-
52
-
-
1542748076
-
Aligning multiple genomic sequences with the threaded blockset aligner
-
Blanchette M, Kent WJ, Riemer C, Elnitski L, Smit AF, et al. 2004. Aligning multiple genomic sequences with the threaded blockset aligner. Genome Res. 14(4):708-15
-
(2004)
Genome Res.
, vol.14
, Issue.4
, pp. 708-715
-
-
Blanchette, M.1
Kent, W.J.2
Riemer, C.3
Elnitski, L.4
Smit, A.F.5
-
53
-
-
80055096207
-
PSAR: Measuring multiple sequence alignment reliability by probabilistic sampling
-
Kim J, Ma J. 2011. PSAR: measuring multiple sequence alignment reliability by probabilistic sampling. Nucleic Acids Res. 39(15):6359-68
-
(2011)
Nucleic Acids Res.
, vol.39
, Issue.15
, pp. 6359-6368
-
-
Kim, J.1
Ma, J.2
-
54
-
-
59549102237
-
Sequence progressive alignment, a framework for practical large-scale probabilistic consistency alignment
-
Paten B, Herrero J, Beal K, Birney E. 2009. Sequence progressive alignment, a framework for practical large-scale probabilistic consistency alignment. Bioinformatics 25(3):295-301
-
(2009)
Bioinformatics
, vol.25
, Issue.3
, pp. 295-301
-
-
Paten, B.1
Herrero, J.2
Beal, K.3
Birney, E.4
-
55
-
-
0027507739
-
Characterization of the pufferfish (Fugu) genome as a compact model vertebrate genome
-
Brenner S, Elgar G, Sandford R, MacRae A, Venkatesh B, Aparicio S. 1993. Characterization of the pufferfish (Fugu) genome as a compact model vertebrate genome. Nature 366(6452):265-68
-
(1993)
Nature
, vol.366
, Issue.6452
, pp. 265-268
-
-
Brenner, S.1
Elgar, G.2
Sandford, R.3
MacRae, A.4
Venkatesh, B.5
Aparicio, S.6
-
56
-
-
0037162885
-
Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes
-
Aparicio S, Chapman J, Stupka E, Putnam N, Chia J-M, et al. 2002. Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes. Science 297(5585):1301-10
-
(2002)
Science
, vol.297
, Issue.5585
, pp. 1301-1310
-
-
Aparicio, S.1
Chapman, J.2
Stupka, E.3
Putnam, N.4
Chia, J.-M.5
-
57
-
-
7244259101
-
Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype
-
Jaillon O, Aury J-M, Brunet F, Petit J-L, Stange-Thomann N, et al. 2004. Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype. Nature 431(7011):946-57
-
(2004)
Nature
, vol.431
, Issue.7011
, pp. 946-957
-
-
Jaillon, O.1
Aury, J.-M.2
Brunet, F.3
Petit, J.-L.4
Stange-Thomann, N.5
-
58
-
-
34249994907
-
The medaka draft genome and insights into vertebrate genome evolution
-
Kasahara M, Naruse K, Sasaki S, Nakatani Y, Qu W, et al. 2007. The medaka draft genome and insights into vertebrate genome evolution. Nature 447(7145):714-19
-
(2007)
Nature
, vol.447
, Issue.7145
, pp. 714-719
-
-
Kasahara, M.1
Naruse, K.2
Sasaki, S.3
Nakatani, Y.4
Qu, W.5
-
59
-
-
84859462157
-
The genomic basis of adaptive evolution in threespine sticklebacks
-
Jones FC, Grabherr MG, Chan YF, Russell P, Mauceli E, et al. 2012. The genomic basis of adaptive evolution in threespine sticklebacks. Nature 484(7392):55-61
-
(2012)
Nature
, vol.484
, Issue.7392
, pp. 55-61
-
-
Jones, F.C.1
Grabherr, M.G.2
Chan, Y.F.3
Russell, P.4
Mauceli, E.5
-
60
-
-
84876798186
-
The zebrafish reference genome sequence and its relationship to the human genome
-
Howe K, Clark MD, Torroja CF, Torrance J, Berthelot C, et al. 2013. The zebrafish reference genome sequence and its relationship to the human genome. Nature 496(7446):498-503
-
(2013)
Nature
, vol.496
, Issue.7446
, pp. 498-503
-
-
Howe, K.1
Clark, M.D.2
Torroja, C.F.3
Torrance, J.4
Berthelot, C.5
-
61
-
-
84878607707
-
The genome of the platyfish, Xiphophorus maculatus, provides insights into evolutionary adaptation and several complex traits
-
Schartl M, Walter RB, Shen Y, Garcia T, Catchen J, et al. 2013. The genome of the platyfish, Xiphophorus maculatus, provides insights into evolutionary adaptation and several complex traits. Nat. Genet. 45(5):567-72
-
(2013)
Nat. Genet.
, vol.45
, Issue.5
, pp. 567-572
-
-
Schartl, M.1
Walter, R.B.2
Shen, Y.3
Garcia, T.4
Catchen, J.5
-
62
-
-
84869063141
-
Fish lateral line innovation: Insights into the evolutionary genomic dynamics of a unique mechanosensory organ
-
Philip S, Machado JP, Maldonado E, Vasconcelos V,O'Brien SJ, et al. 2012. Fish lateral line innovation: insights into the evolutionary genomic dynamics of a unique mechanosensory organ. Mol. Biol. Evol. 29(12):3887-98
-
(2012)
Mol. Biol. Evol.
, vol.29
, Issue.12
, pp. 3887-3898
-
-
Philip, S.1
Machado, J.P.2
Maldonado, E.3
Vasconcelos, V.4
O'Brien, S.J.5
-
64
-
-
23244432820
-
New amphibians and global conservation: A boost in species discoveries in a highly endangered vertebrate group
-
Köhler J, Vieites DR, Bonett RM, García FH, Glaw F, et al. 2005. New amphibians and global conservation: a boost in species discoveries in a highly endangered vertebrate group. Bioscience 55(8):693-96
-
(2005)
Bioscience
, vol.55
, Issue.8
, pp. 693-696
-
-
Köhler, J.1
Vieites, D.R.2
Bonett, R.M.3
García, F.H.4
Glaw, F.5
-
65
-
-
77951823093
-
The genome of the western clawed frog Xenopus tropicalis
-
Hellsten U, HarlandRM,Gilchrist MJ, HendrixD, Jurka J, et al. 2010. The genome of the western clawed frog Xenopus tropicalis. Science 328(5978):633-36
-
(2010)
Science
, vol.328
, Issue.5978
, pp. 633-636
-
-
Hellsten, U.1
Harland, R.M.2
Gilchrist, M.J.3
Hendrix, D.4
Jurka, J.5
-
66
-
-
0038129545
-
Variation across amphibian species in the size of the nuclear genome supports a pluralistic, hierarchical approach to the C-value enigma
-
Gregory TR. 2003. Variation across amphibian species in the size of the nuclear genome supports a pluralistic, hierarchical approach to the C-value enigma. Biol. J. Linn. Soc. Lond. 79(2):329-39
-
(2003)
Biol. J. Linn. Soc. Lond.
, vol.79
, Issue.2
, pp. 329-339
-
-
Gregory, T.R.1
-
67
-
-
82955247979
-
A guided tour of large genome size in animals: What we know and where we are heading
-
Dufresne F, Jeffery N. 2011. A guided tour of large genome size in animals: what we know and where we are heading. Chromosome Res. 19(7):925-38
-
(2011)
Chromosome Res.
, vol.19
, Issue.7
, pp. 925-938
-
-
Dufresne, F.1
Jeffery, N.2
-
68
-
-
19544376410
-
The C-value enigma in plants and animals: A review of parallels and an appeal for partnership
-
Gregory TR. 2005. The C-value enigma in plants and animals: a review of parallels and an appeal for partnership. Ann. Bot. 95(1):133-46
-
(2005)
Ann. Bot.
, vol.95
, Issue.1
, pp. 133-146
-
-
Gregory, T.R.1
-
69
-
-
84865806641
-
LTR retrotransposons contribute to genomic gigantism in plethodontid salamanders
-
Sun C, Shepard DB, Chong RA, López Arriaza J, Hall K, et al. 2012. LTR retrotransposons contribute to genomic gigantism in plethodontid salamanders. Genome Biol. Evol. 4(2):168-83
-
(2012)
Genome Biol. Evol.
, vol.4
, Issue.2
, pp. 168-183
-
-
Sun, C.1
Shepard, D.B.2
Chong, R.A.3
López Arriaza, J.4
Hall, K.5
-
70
-
-
77954817109
-
The ecological impact of invasive cane toads (Bufo marinus) in Australia
-
Shine R. 2010. The ecological impact of invasive cane toads (Bufo marinus) in Australia. Q. Rev. Biol. 85(3):253-91
-
(2010)
Q. Rev. Biol.
, vol.85
, Issue.3
, pp. 253-291
-
-
Shine, R.1
-
72
-
-
0035112046
-
Frogs without polliwogs: Evolution of anuran direct development
-
Callery EM, Fang H, Elinson RP. 2001. Frogs without polliwogs: evolution of anuran direct development. BioEssays 23(3):233-41
-
(2001)
BioEssays
, vol.23
, Issue.3
, pp. 233-241
-
-
Callery, E.M.1
Fang, H.2
Elinson, R.P.3
-
73
-
-
36048934935
-
Facultative mate choice drives adaptive hybridization
-
Pfennig KS. 2007. Facultative mate choice drives adaptive hybridization. Science 318(5852):965-67
-
(2007)
Science
, vol.318
, Issue.5852
, pp. 965-967
-
-
Pfennig, K.S.1
-
74
-
-
84864279590
-
Mate choice and the genetic basis for colour variation in a polymorphic dart frog: Inferences from a wild pedigree
-
Richards-Zawacki CL,WangIJ, Summers K. 2012. Mate choice and the genetic basis for colour variation in a polymorphic dart frog: inferences from a wild pedigree. Mol. Ecol. 21(15):3879-92
-
(2012)
Mol. Ecol.
, vol.21
, Issue.15
, pp. 3879-3892
-
-
Richards-Zawacki, C.L.1
Wang, I.J.2
Summers, K.3
-
75
-
-
41749084102
-
The principles of rapid response for amphibian conservation, using the programmes in Panama as an example
-
Gagliardo R, Crump P, Griffith E, Mendelson J, Ross H, Zippel K. 2008. The principles of rapid response for amphibian conservation, using the programmes in Panama as an example. Int. Zoo Yearb. 42(1):125-35
-
(2008)
Int. Zoo Yearb.
, vol.42
, Issue.1
, pp. 125-135
-
-
Gagliardo, R.1
Crump, P.2
Griffith, E.3
Mendelson, J.4
Ross, H.5
Zippel, K.6
-
76
-
-
84857216135
-
Radiation and functional diversification of alpha keratins during early vertebrate evolution
-
Vandebergh W, Bossuyt F. 2012. Radiation and functional diversification of alpha keratins during early vertebrate evolution. Mol. Biol. Evol. 29(3):995-1004
-
(2012)
Mol. Biol. Evol.
, vol.29
, Issue.3
, pp. 995-1004
-
-
Vandebergh, W.1
Bossuyt, F.2
-
77
-
-
0030689711
-
The natural history of amphibian skin secretions, their normal functioning and potential medical applications
-
Clarke BT. 1997. The natural history of amphibian skin secretions, their normal functioning and potential medical applications. Biol. Rev. Camb. Philos. Soc. 72(3):365-79
-
(1997)
Biol. Rev. Camb. Philos. Soc.
, vol.72
, Issue.3
, pp. 365-379
-
-
Clarke, B.T.1
-
78
-
-
20444371041
-
Catastrophic population declines and extinctions in neotropical harlequin frogs (Bufonidae: Atelopus)
-
La Marca E, Lips KR, Lötters S, Puschendorf R, Ibáñez R, et al. 2005. Catastrophic population declines and extinctions in neotropical harlequin frogs (Bufonidae: Atelopus). Biotropica 37(2):190-201
-
(2005)
Biotropica
, vol.37
, Issue.2
, pp. 190-201
-
-
La Marca, E.1
Lips, K.R.2
Lötters, S.3
Puschendorf, R.4
Ibáñez, R.5
-
79
-
-
80053627099
-
MHCgenotypes associate with resistance to a frog-killing fungus
-
Savage AE, Zamudio KR. 2011.MHCgenotypes associate with resistance to a frog-killing fungus. PNAS 108(40):16705-10
-
(2011)
PNAS
, vol.108
, Issue.40
, pp. 16705-16710
-
-
Savage, A.E.1
Zamudio, K.R.2
-
80
-
-
61849107544
-
Lizards, snakes, and amphisbaenians (Squamata)
-
ed. SB Hedges, S Kumar, Oxford: Oxford Univ. Press
-
Hedges SB, Vidal N. 2009. Lizards, snakes, and amphisbaenians (Squamata). In The Timetree of Life, ed. SB Hedges, S Kumar, pp. 383-89. Oxford: Oxford Univ. Press
-
(2009)
The Timetree of Life
, pp. 383-389
-
-
Hedges, S.B.1
Vidal, N.2
-
81
-
-
80052742726
-
Transitions between sex-determining systems in reptiles and amphibians
-
Sarre SD, Ezaz T, Georges A. 2011. Transitions between sex-determining systems in reptiles and amphibians. Annu. Rev. Genomics Hum. Genet. 12:391-406
-
(2011)
Annu. Rev. Genomics Hum. Genet.
, vol.12
, pp. 391-406
-
-
Sarre, S.D.1
Ezaz, T.2
Georges, A.3
-
82
-
-
84857358070
-
Are some chromosomes particularly good at sex? Insights from amniotes
-
O'Meally D, Ezaz T, Georges A, Sarre SD, Graves JAM. 2012. Are some chromosomes particularly good at sex? Insights from amniotes. Chromosome Res. 20(1):7-19
-
(2012)
Chromosome Res.
, vol.20
, Issue.1
, pp. 7-19
-
-
O'Meally, D.1
Ezaz, T.2
Georges, A.3
Sarre, S.D.4
Graves, J.A.M.5
-
83
-
-
84883197915
-
Comparative sex chromosomegenomics in snakes: Differentiation, evolutionary strata, and lack of global dosage compensation
-
Vicoso B, Emerson JJ, Zektser Y, Mahajan S, Bachtrog D. 2013. Comparative sex chromosomegenomics in snakes: differentiation, evolutionary strata, and lack of global dosage compensation. PLOS Biol. 11(8):e1001643
-
(2013)
PLOS Biol.
, vol.11
, Issue.8
-
-
Vicoso, B.1
Emerson, J.J.2
Zektser, Y.3
Mahajan, S.4
Bachtrog, D.5
-
84
-
-
84919688168
-
Lost sex in the reptiles: Constraints and correlations
-
ed. I Schön, K Martens, P van Dijk, Dordrecht, Neth.: Springer Sci
-
Kearney M, Fujita MK, Ridenour J. 2009. Lost sex in the reptiles: constraints and correlations. In Lost Sex: The Evolutionary Biology of Parthogenesis, ed. I Schön, K Martens, P van Dijk, pp. 447-74. Dordrecht, Neth.: Springer Sci.
-
(2009)
Lost Sex: The Evolutionary Biology of Parthogenesis
, pp. 447-474
-
-
Kearney, M.1
Fujita, M.K.2
Ridenour, J.3
-
85
-
-
77951877586
-
Origin and evolution of parthenogenetic genomes in lizards: Current state and future directions
-
Fujita MK, Moritz C. 2009. Origin and evolution of parthenogenetic genomes in lizards: current state and future directions. Cytogenet. Genome Res. 127(2-4):261-72
-
(2009)
Cytogenet. Genome Res.
, vol.127
, Issue.2-4
, pp. 261-272
-
-
Fujita, M.K.1
Moritz, C.2
-
87
-
-
80053359585
-
The genome of the green anole lizard and a comparative analysis with birds and mammals
-
Alföldi J, Di Palma F, Grabherr M, Williams C, Kong L, et al. 2011. The genome of the green anole lizard and a comparative analysis with birds and mammals. Nature 477(7366):587-91
-
(2011)
Nature
, vol.477
, Issue.7366
, pp. 587-591
-
-
Alföldi, J.1
Di Palma, F.2
Grabherr, M.3
Williams, C.4
Kong, L.5
-
88
-
-
84856296604
-
The Anolis lizard genome: An amniote genome without isochores
-
Fujita MK, Edwards SV, Ponting CP. 2011. The Anolis lizard genome: an amniote genome without isochores. Genome Biol. Evol. 3:974-84
-
(2011)
Genome Biol. Evol.
, vol.3
, pp. 974-984
-
-
Fujita, M.K.1
Edwards, S.V.2
Ponting, C.P.3
-
89
-
-
84872516192
-
Genome reannotation of the lizard Anolis carolinensis based on 14 adult and embryonic deep transcriptomes
-
Eckalbar WL, Hutchins ED, Markov GJ, Allen AN, Corneveaux JJ, et al. 2013. Genome reannotation of the lizard Anolis carolinensis based on 14 adult and embryonic deep transcriptomes. BMC Genomics 14:49
-
(2013)
BMC Genomics
, vol.14
, pp. 49
-
-
Eckalbar, W.L.1
Hutchins, E.D.2
Markov, G.J.3
Allen, A.N.4
Corneveaux, J.J.5
-
90
-
-
79960891921
-
Sequencing the genome of the Burmese python (Python molurus bivittatus) as a model for studying extreme adaptations in snakes
-
Castoe TA, de Koning APJ, Hall KT, Yokoyama KD, Gu W, et al. 2011. Sequencing the genome of the Burmese python (Python molurus bivittatus) as a model for studying extreme adaptations in snakes. Genome Biol. 12(7):406
-
(2011)
Genome Biol.
, vol.12
, Issue.7
, pp. 406
-
-
Castoe, T.A.1
De Koning, A.P.J.2
Hall, K.T.3
Yokoyama, K.D.4
Gu, W.5
-
91
-
-
84890812848
-
The Burmese python genome reveals the molecular basis for extreme adaptation in snakes
-
Castoe TA, de Koning APJ, Hall KT, Card DC, Schield DR, et al. 2013. The Burmese python genome reveals the molecular basis for extreme adaptation in snakes. PNAS 110(51):20645-50
-
(2013)
PNAS
, vol.110
, Issue.51
, pp. 20645-20650
-
-
Castoe, T.A.1
De Koning, A.P.J.2
Hall, K.T.3
Card, D.C.4
Schield, D.R.5
-
92
-
-
84890842764
-
The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
-
Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, et al. 2013. The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system. PNAS 110(51):20651-56
-
(2013)
PNAS
, vol.110
, Issue.51
, pp. 20651-20656
-
-
Vonk, F.J.1
Casewell, N.R.2
Henkel, C.V.3
Heimberg, A.M.4
Jansen, H.J.5
-
93
-
-
84917697073
-
Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs
-
Green RE, Braun EL, Armstrong J, Earl D, Nguyen N, et al. 2014. Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs. Science 346(6215):1254449
-
(2014)
Science
, vol.346
, Issue.6215
, pp. 1254449
-
-
Green, R.E.1
Braun, E.L.2
Armstrong, J.3
Earl, D.4
Nguyen, N.5
-
94
-
-
84883459272
-
Genome analysis and signature discovery for diving and sensory properties of the endangered Chinese alligator
-
Wan Q-H, Pan S-K, Hu L, Zhu Y, Xu P-W, et al. 2013. Genome analysis and signature discovery for diving and sensory properties of the endangered Chinese alligator. Cell Res. 23(9):1091-105
-
(2013)
Cell Res.
, vol.23
, Issue.9
, pp. 1091-1105
-
-
Wan, Q.-H.1
Pan, S.-K.2
Hu, L.3
Zhu, Y.4
Xu, P.-W.5
-
95
-
-
84879020737
-
The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage
-
Shaffer HB, Minx P, Warren DE, Shedlock AM, Thomson RC, et al. 2013. The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage. Genome Biol. 14(3):R28
-
(2013)
Genome Biol.
, vol.14
, Issue.3
, pp. R28
-
-
Shaffer, H.B.1
Minx, P.2
Warren, D.E.3
Shedlock, A.M.4
Thomson, R.C.5
-
96
-
-
84878729685
-
The draft genomes of soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan
-
Wang Z, Pascual-Anaya J, Zadissa A, Li W, Niimura Y, et al. 2013. The draft genomes of soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan. Nat. Genet. 45(6):701-6
-
(2013)
Nat. Genet.
, vol.45
, Issue.6
, pp. 701-706
-
-
Wang, Z.1
Pascual-Anaya, J.2
Zadissa, A.3
Li, W.4
Niimura, Y.5
-
97
-
-
64949087121
-
The toxicogenomic multiverse: Convergent recruitment of proteins into animal venoms
-
Fry BG, Roelants K, Champagne DE, Scheib H, Tyndall JDA, et al. 2009. The toxicogenomic multiverse: convergent recruitment of proteins into animal venoms. Annu. Rev. Genomics Hum. Genet. 10:483-511
-
(2009)
Annu. Rev. Genomics Hum. Genet.
, vol.10
, pp. 483-511
-
-
Fry, B.G.1
Roelants, K.2
Champagne, D.E.3
Scheib, H.4
Tyndall, J.D.A.5
-
98
-
-
28844479703
-
The dragon lizard Pogona vitticeps has ZZ/ZW micro-sex chromosomes
-
Ezaz T, Quinn AE, Miura I, Sarre SD, Georges A, Marshall Graves JA. 2005. The dragon lizard Pogona vitticeps has ZZ/ZW micro-sex chromosomes. Chromosome Res. 13(8):763-76
-
(2005)
Chromosome Res.
, vol.13
, Issue.8
, pp. 763-776
-
-
Ezaz, T.1
Quinn, A.E.2
Miura, I.3
Sarre, S.D.4
Georges, A.5
Marshall Graves, J.A.6
-
99
-
-
34247507591
-
Temperature sex reversal implies sex gene dosage in a reptile
-
Quinn AE, Georges A, Sarre SD, Guarino F, Ezaz T, Marshall Graves JA. 2007. Temperature sex reversal implies sex gene dosage in a reptile. Science 316(5823):411
-
(2007)
Science
, vol.316
, Issue.5823
, pp. 411
-
-
Quinn, A.E.1
Georges, A.2
Sarre, S.D.3
Guarino, F.4
Ezaz, T.5
Marshall Graves, J.A.6
-
101
-
-
84869088692
-
The global diversity of birds in space and time
-
Jetz W, Thomas GH, Joy JB, Hartmann K, Mooers AO. 2012. The global diversity of birds in space and time. Nature 491:444-48
-
(2012)
Nature
, vol.491
, pp. 444-448
-
-
Jetz, W.1
Thomas, G.H.2
Joy, J.B.3
Hartmann, K.4
Mooers, A.O.5
-
102
-
-
84898933840
-
Morphological clocks in paleontology, and a mid-Cretaceous origin of crown
-
Lee MSY, Cau A, Naish D, Dyke GJ. 2014. Morphological clocks in paleontology, and a mid-Cretaceous origin of crown. Aves. Syst. Biol. 63:442-49
-
(2014)
Aves. Syst. Biol.
, vol.63
, pp. 442-449
-
-
Lee, M.S.Y.1
Cau, A.2
Naish, D.3
Dyke, G.J.4
-
103
-
-
10644283823
-
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
-
Int. Chicken Genome Seq. Consort. 2004. Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 432(7018):695-716
-
(2004)
Nature
, vol.432
, Issue.7018
, pp. 695-716
-
-
Int. Chicken Genome Seq. Consort.1
-
104
-
-
77957903598
-
Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): Genome assembly and analysis
-
Dalloul RA, Long JA, Zimin AV, Aslam L, Beal K, et al. 2010. Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis. PLOS Biol. 8(9):e1000475
-
(2010)
PLOS Biol.
, vol.8
, Issue.9
, pp. e1000475
-
-
Dalloul, R.A.1
Long, J.A.2
Zimin, A.V.3
Aslam, L.4
Beal, K.5
-
105
-
-
77950376512
-
The genome of a songbird
-
Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, et al. 2010. The genome of a songbird. Nature 464(7289):757-62
-
(2010)
Nature
, vol.464
, Issue.7289
, pp. 757-762
-
-
Warren, W.C.1
Clayton, D.F.2
Ellegren, H.3
Arnold, A.P.4
Hillier, L.W.5
-
106
-
-
46449135061
-
A phylogenomic study of birds reveals their evolutionary history
-
Hackett SJ, Kimball RT, Reddy S, Bowie RCK, Braun EL, et al. 2008. A phylogenomic study of birds reveals their evolutionary history. Science 320(5884):1763-68
-
(2008)
Science
, vol.320
, Issue.5884
, pp. 1763-1768
-
-
Hackett, S.J.1
Kimball, R.T.2
Reddy, S.3
Bowie, R.C.K.4
Braun, E.L.5
-
107
-
-
79957516618
-
Evolution of modern birds revealed by mitogenomics: Timing the radiation and origin of major orders
-
PachecoMA,Battistuzzi FU, LentinoM, Aguilar RF, Kumar S, Escalante AA. 2011. Evolution of modern birds revealed by mitogenomics: timing the radiation and origin of major orders. Mol. Biol. Evol. 28(6):1927-42
-
(2011)
Mol. Biol. Evol.
, vol.28
, Issue.6
, pp. 1927-1942
-
-
Pacheco, M.A.1
Battistuzzi, F.U.2
Lentino, M.3
Aguilar, R.F.4
Kumar, S.5
Escalante, A.A.6
-
108
-
-
84873860010
-
Aphylogeny of birds based on over 1,500 loci collected by target enrichment and high-throughput sequencing
-
McCormack JE, HarveyMG,Faircloth BC, Crawford NG, Glenn TC, Brumfield RT. 2013.Aphylogeny of birds based on over 1,500 loci collected by target enrichment and high-throughput sequencing. PLOS ONE 8(1):e54848
-
(2013)
PLOS ONE
, vol.8
, Issue.1
-
-
McCormack, J.E.1
Harvey, M.G.2
Faircloth, B.C.3
Crawford, N.G.4
Glenn, T.C.5
Brumfield, R.T.6
-
110
-
-
84987886949
-
The avian phylogenomics project data
-
Zhang G, Li B, Li C, Gilbert MTP, Jarvis E, et al. 2014. The avian phylogenomics project data. GigaScience Database. http://dx.doi.org/10.5524/101000
-
(2014)
GigaScience Database
-
-
Zhang, G.1
Li, B.2
Li, C.3
Gilbert, M.T.P.4
Jarvis, E.5
-
112
-
-
84917708482
-
Whole genome analyses resolve early branches in the tree of life of modern birds
-
Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, et al. 2014. Whole genome analyses resolve early branches in the tree of life of modern birds. Science 346(6215):1320-31
-
(2014)
Science
, vol.346
, Issue.6215
, pp. 1320-1331
-
-
Jarvis, E.D.1
Mirarab, S.2
Aberer, A.J.3
Li, B.4
Houde, P.5
-
113
-
-
84917678595
-
Comparative genomics reveals insights into avian genome evolution and adaptation
-
Zhang G, Li C, Li Q, Li B, Larkin DM, et al. 2014. Comparative genomics reveals insights into avian genome evolution and adaptation. Science 346(6215):1311-20
-
(2014)
Science
, vol.346
, Issue.6215
, pp. 1311-1320
-
-
Zhang, G.1
Li, C.2
Li, Q.3
Li, B.4
Larkin, D.M.5
-
114
-
-
80054973803
-
A high-resolution map of human evolutionary constraint using 29 mammals
-
Lindblad-Toh K, Garber M, Zuk O, Lin MF, Parker BJ, et al. 2011. A high-resolution map of human evolutionary constraint using 29 mammals. Nature 478(7370):476-82
-
(2011)
Nature
, vol.478
, Issue.7370
, pp. 476-482
-
-
Lindblad-Toh, K.1
Garber, M.2
Zuk, O.3
Lin, M.F.4
Parker, B.J.5
-
115
-
-
30344438542
-
The late miocene radiation of modern Felidae: A genetic assessment
-
Johnson WE, Eizirik E, Pecon-Slattery J, Murphy WJ, Antunes A, et al. 2006. The late miocene radiation of modern Felidae: a genetic assessment. Science 311(5757):73-77
-
(2006)
Science
, vol.311
, Issue.5757
, pp. 73-77
-
-
Johnson, W.E.1
Eizirik, E.2
Pecon-Slattery, J.3
Murphy, W.J.4
Antunes, A.5
-
116
-
-
84864398778
-
The yak genome and adaptation to life at high altitude
-
Qiu Q, Zhang G, Ma T, Qian W, Wang J, et al. 2012. The yak genome and adaptation to life at high altitude. Nat. Genet. 44(8):946-49
-
(2012)
Nat. Genet.
, vol.44
, Issue.8
, pp. 946-949
-
-
Qiu, Q.1
Zhang, G.2
Ma, T.3
Qian, W.4
Wang, J.5
-
117
-
-
84898808163
-
Comparative primate genomics: Emerging patterns of genome content and dynamics
-
Rogers J, Gibbs RA. 2014. Comparative primate genomics: emerging patterns of genome content and dynamics. Nat. Rev. Genet. 15(5):347-59
-
(2014)
Nat. Rev. Genet.
, vol.15
, Issue.5
, pp. 347-359
-
-
Rogers, J.1
Gibbs, R.A.2
-
118
-
-
84881159598
-
Great ape genetic diversity and population history
-
Prado-Martinez J, Sudmant PH, Kidd JM, Li H, Kelley JL, et al. 2013. Great ape genetic diversity and population history. Nature 499(7459):471-75
-
(2013)
Nature
, vol.499
, Issue.7459
, pp. 471-475
-
-
Prado-Martinez, J.1
Sudmant, P.H.2
Kidd, J.M.3
Li, H.4
Kelley, J.L.5
-
119
-
-
84870297139
-
The genomic landscape of species divergence in Ficedula flycatchers
-
Ellegren H, Smeds L, Burri R, Olason PI, Backström N, et al. 2012. The genomic landscape of species divergence in Ficedula flycatchers. Nature 491(7426):756-60
-
(2012)
Nature
, vol.491
, Issue.7426
, pp. 756-760
-
-
Ellegren, H.1
Smeds, L.2
Burri, R.3
Olason, P.I.4
Backström, N.5
-
120
-
-
84883142476
-
Genome analysis reveals insights into physiology and longevity of the Brandt's bat Myotis brandtii
-
Seim I, Fang X, Xiong Z, Lobanov AV, Huang Z, et al. 2013. Genome analysis reveals insights into physiology and longevity of the Brandt's bat Myotis brandtii. Nat. Commun. 4:2212
-
(2013)
Nat. Commun.
, vol.4
, pp. 2212
-
-
Seim, I.1
Fang, X.2
Xiong, Z.3
Lobanov, A.V.4
Huang, Z.5
-
121
-
-
84882487857
-
Molecular signatures of mammalian hibernation: Comparisons with alternative phenotypes
-
Xu Y, Shao C, Fedorov VB, Goropashnaya AV, Barnes BM, Yan J. 2013. Molecular signatures of mammalian hibernation: comparisons with alternative phenotypes. BMC Genomics 14(1):567
-
(2013)
BMC Genomics
, vol.14
, Issue.1
, pp. 567
-
-
Xu, Y.1
Shao, C.2
Fedorov, V.B.3
Goropashnaya, A.V.4
Barnes, B.M.5
Yan, J.6
-
122
-
-
84893741469
-
Conservation genomics of threatened animal species
-
Steiner CC, Putnam AS, Hoeck PEA, Ryder OA. 2013. Conservation genomics of threatened animal species. Annu. Rev. Anim. Biosci. 1(1):261-81
-
(2013)
Annu. Rev. Anim. Biosci.
, vol.1
, Issue.1
, pp. 261-281
-
-
Steiner, C.C.1
Putnam, A.S.2
Hoeck, P.E.A.3
Ryder, O.A.4
-
123
-
-
79961044560
-
Genetic diversity and population structure of the endangered marsupial Sarcophilus harrisii (Tasmanian devil)
-
Miller W, Hayes VM, Ratan A, Petersen C, Wittekindt NE, et al. 2012. Genetic diversity and population structure of the endangered marsupial Sarcophilus harrisii (Tasmanian devil). PNAS 108(30):12348-53
-
(2012)
PNAS
, vol.108
, Issue.30
, pp. 12348-12353
-
-
Miller, W.1
Hayes, V.M.2
Ratan, A.3
Petersen, C.4
Wittekindt, N.E.5
-
124
-
-
77952136530
-
A draft sequence of the Neandertal genome
-
Green RE, Krause J, Briggs AW, Maricic T, Stenzel U, et al. 2010. A draft sequence of the Neandertal genome. Science 328(5979):710-22
-
(2010)
Science
, vol.328
, Issue.5979
, pp. 710-722
-
-
Green, R.E.1
Krause, J.2
Briggs, A.W.3
Maricic, T.4
Stenzel, U.5
-
125
-
-
76749141381
-
Ancient human genome sequence of an extinct Palaeo-Eskimo
-
Rasmussen M, Li Y, Lindgreen S, Pedersen JS, Albrechtsen A, et al. 2010. Ancient human genome sequence of an extinct Palaeo-Eskimo. Nature 463(7282):757-62
-
(2010)
Nature
, vol.463
, Issue.7282
, pp. 757-762
-
-
Rasmussen, M.1
Li, Y.2
Lindgreen, S.3
Pedersen, J.S.4
Albrechtsen, A.5
-
126
-
-
84867331947
-
A high-coverage genome sequence from an archaic Denisovan individual
-
Meyer M, Kircher M, Gansauge M-T, Li H, Racimo F, et al. 2012. A high-coverage genome sequence from an archaic Denisovan individual. Science 338(6104):222-26
-
(2012)
Science
, vol.338
, Issue.6104
, pp. 222-226
-
-
Meyer, M.1
Kircher, M.2
Gansauge, M.-T.3
Li, H.4
Racimo, F.5
-
127
-
-
84879888373
-
Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse
-
Orlando L, Ginolhac A, Zhang G, Froese D, Albrechtsen A, et al. 2013. Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse. Nature 499(7456):74-78
-
(2013)
Nature
, vol.499
, Issue.7456
, pp. 74-78
-
-
Orlando, L.1
Ginolhac, A.2
Zhang, G.3
Froese, D.4
Albrechtsen, A.5
-
128
-
-
84904594882
-
Drastic population fluctuations explain the rapid extinction of the passenger pigeon
-
Hung C-M, Shaner P-JL, Zink RM, Liu W-C, Chu T-C, et al. 2014. Drastic population fluctuations explain the rapid extinction of the passenger pigeon. PNAS 111:10636-41
-
(2014)
PNAS
, vol.111
, pp. 10636-10641
-
-
Hung, C.-M.1
Shaner, P.-J.L.2
Zink, R.M.3
Liu, W.-C.4
Chu, T.-C.5
-
129
-
-
56749119854
-
Sequencing the nuclear genome of the extinct woolly mammoth
-
Miller W, Drautz DI, Ratan A, Pusey B, Qi J, et al. 2008. Sequencing the nuclear genome of the extinct woolly mammoth. Nature 456(7220):387-90
-
(2008)
Nature
, vol.456
, Issue.7220
, pp. 387-390
-
-
Miller, W.1
Drautz, D.I.2
Ratan, A.3
Pusey, B.4
Qi, J.5
-
130
-
-
84892911863
-
A paleogenomic perspective on evolution and gene function: New insights from ancient DNA
-
Shapiro B, Hofreiter M. 2014. A paleogenomic perspective on evolution and gene function: new insights from ancient DNA. Science 343(6169):1236573
-
(2014)
Science
, vol.343
, Issue.6169
, pp. 1236573
-
-
Shapiro, B.1
Hofreiter, M.2
-
131
-
-
84895867400
-
Whole-genome sequence of a flatfish provides insights into ZW sex chromosome evolution and adaptation to a benthic lifestyle
-
Chen S, Zhang G, Shao C, Huang Q, Liu G, et al. 2014. Whole-genome sequence of a flatfish provides insights into ZW sex chromosome evolution and adaptation to a benthic lifestyle. Nat. Genet. 46(3):253-60
-
(2014)
Nat. Genet.
, vol.46
, Issue.3
, pp. 253-260
-
-
Chen, S.1
Zhang, G.2
Shao, C.3
Huang, Q.4
Liu, G.5
-
132
-
-
18644378331
-
The Generic Genome Browser: A building block for a model organism system database
-
Stein LD, Mungall C, Shu S, Caudy M, Mangone M, et al. 2002. The Generic Genome Browser: a building block for a model organism system database. Genome Res. 12(10):1599-610
-
(2002)
Genome Res.
, vol.12
, Issue.10
, pp. 1599-1610
-
-
Stein, L.D.1
Mungall, C.2
Shu, S.3
Caudy, M.4
Mangone, M.5
-
133
-
-
69749083447
-
JBrowse: A next-generation genome browser
-
Skinner ME, Uzilov AV, Stein LD, Mungall CJ, Holmes IH. 2009. JBrowse: a next-generation genome browser. Genome Res. 19(9):1630-38
-
(2009)
Genome Res.
, vol.19
, Issue.9
, pp. 1630-1638
-
-
Skinner, M.E.1
Uzilov, A.V.2
Stein, L.D.3
Mungall, C.J.4
Holmes, I.H.5
-
134
-
-
84891814834
-
Track data hubs enable visualization of user-defined genome-wide annotations on the UCSC genome browser
-
Raney BJ, Dreszer TR, Barber GP, Clawson H, Fujita PA, et al. 2014. Track data hubs enable visualization of user-defined genome-wide annotations on the UCSC genome browser. Bioinformatics 30(7):1003-5
-
(2014)
Bioinformatics
, vol.30
, Issue.7
, pp. 1003-1005
-
-
Raney, B.J.1
Dreszer, T.R.2
Barber, G.P.3
Clawson, H.4
Fujita, P.A.5
-
135
-
-
84885078508
-
Evidence for at least six hox clusters in the Japanese lamprey (Lethenteron japonicum)
-
Mehta TK, Ravi V, Yamasaki S, Lee AP, LianMM,et al. 2013. Evidence for at least six hox clusters in the Japanese lamprey (Lethenteron japonicum). PNAS 110(40):16044-49
-
(2013)
PNAS
, vol.110
, Issue.40
, pp. 16044-16049
-
-
Mehta, T.K.1
Ravi, V.2
Yamasaki, S.3
Lee, A.P.4
Lian, M.M.5
-
136
-
-
84875692135
-
Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution
-
Smith JJ, Kuraku S, Holt C, Sauka-Spengler T, Jiang N, et al. 2013. Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution. Nat. Genet. 45(4):415-21
-
(2013)
Nat. Genet.
, vol.45
, Issue.4
, pp. 415-421
-
-
Smith, J.J.1
Kuraku, S.2
Holt, C.3
Sauka-Spengler, T.4
Jiang, N.5
-
137
-
-
79960102692
-
Integration of the genetic map and genome assembly of fugu facilitates insights into distinct features of genome evolution in teleosts and mammals
-
Kai W, Kikuchi K, Tohari S, Chew AK, Tay A, et al. 2011. Integration of the genetic map and genome assembly of fugu facilitates insights into distinct features of genome evolution in teleosts and mammals. Genome Biol. Evol. 3:424-42
-
(2011)
Genome Biol. Evol.
, vol.3
, pp. 424-442
-
-
Kai, W.1
Kikuchi, K.2
Tohari, S.3
Chew, A.K.4
Tay, A.5
-
138
-
-
80052606169
-
The genome sequence of Atlantic cod reveals a unique immune system
-
Star B, Nederbragt AJ, Jentoft S, Grimholt U, Malmstrøm M, et al. 2011. The genome sequence of Atlantic cod reveals a unique immune system. Nature 477(7363):207-10
-
(2011)
Nature
, vol.477
, Issue.7363
, pp. 207-210
-
-
Star, B.1
Nederbragt, A.J.2
Jentoft, S.3
Grimholt, U.4
Malmstrøm, M.5
-
139
-
-
84868213604
-
First draft genome sequence of the Japanese eel, Anguilla japonica
-
Henkel CV, Dirks RP, de Wijze DL, Minegishi Y, Aoyama J, et al. 2012. First draft genome sequence of the Japanese eel, Anguilla japonica. Gene 511(2):195-201
-
(2012)
Gene
, vol.511
, Issue.2
, pp. 195-201
-
-
Henkel, C.V.1
Dirks, R.P.2
De Wijze, D.L.3
Minegishi, Y.4
Aoyama, J.5
-
140
-
-
84879723871
-
Evolutionary changes of multiple visual pigment genes in the complete genome of Pacific bluefin tuna
-
Nakamura Y, Mori K, Saitoh K, Oshima K, Mekuchi M, et al. 2013. Evolutionary changes of multiple visual pigment genes in the complete genome of Pacific bluefin tuna. PNAS 110(27):11061-66
-
(2013)
PNAS
, vol.110
, Issue.27
, pp. 11061-11066
-
-
Nakamura, Y.1
Mori, K.2
Saitoh, K.3
Oshima, K.4
Mekuchi, M.5
-
141
-
-
84899099281
-
The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates
-
Berthelot C, Brunet F, Chalopin D, Juanchich A, Bernard M, et al. 2014. The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates. Nat. Commun. 5:3657
-
(2014)
Nat. Commun.
, vol.5
, pp. 3657
-
-
Berthelot, C.1
Brunet, F.2
Chalopin, D.3
Juanchich, A.4
Bernard, M.5
-
142
-
-
84903281192
-
Genomic basis for the convergent evolution of electric organs
-
Gallant JR, Traeger LL, Volkening JD, Moffett H, Chen P-H, et al. 2014. Genomic basis for the convergent evolution of electric organs. Science 344(6191):1522-25
-
(2014)
Science
, vol.344
, Issue.6191
, pp. 1522-1525
-
-
Gallant, J.R.1
Traeger, L.L.2
Volkening, J.D.3
Moffett, H.4
Chen, P.-H.5
-
143
-
-
84908887044
-
Genome sequence and genetic diversity of the common carp, Cyprinus carpio
-
Xu P, Zhang X, Wang X, Li J, Liu G, et al. 2014. Genome sequence and genetic diversity of the common carp, Cyprinus carpio. Nat. Genet. 46(11):1212-19
-
(2014)
Nat. Genet.
, vol.46
, Issue.11
, pp. 1212-1219
-
-
Xu, P.1
Zhang, X.2
Wang, X.3
Li, J.4
Liu, G.5
-
144
-
-
84922321480
-
The cavefish genome reveals candidate genes for eye loss
-
McGaugh SE, Gross JB, Aken B, Blin M, Borowsky R, et al. 2014. The cavefish genome reveals candidate genes for eye loss. Nat. Commun. 5:5307
-
(2014)
Nat. Commun.
, vol.5
, pp. 5307
-
-
McGaugh, S.E.1
Gross, J.B.2
Aken, B.3
Blin, M.4
Borowsky, R.5
-
145
-
-
84922635686
-
The draft genome of the large yellow croaker reveals well-developed innate immunity
-
Wu C, Zhang D, Kan M, Lv Z, Zhu A, et al. 2014. The draft genome of the large yellow croaker reveals well-developed innate immunity. Nat. Commun. 5:5227
-
(2014)
Nat. Commun.
, vol.5
, pp. 5227
-
-
Wu, C.1
Zhang, D.2
Kan, M.3
Lv, Z.4
Zhu, A.5
-
146
-
-
84922551461
-
Mudskipper genomes provide insights into the terrestrial adaptation of amphibious fishes
-
You X, Bian C, Zan Q, XuX, Liu X, et al. 2014. Mudskipper genomes provide insights into the terrestrial adaptation of amphibious fishes. Nat. Commun. 5:5594
-
(2014)
Nat. Commun.
, vol.5
, pp. 5594
-
-
You, X.1
Bian, C.2
Zan, Q.3
Xu, X.4
Liu, X.5
-
147
-
-
84876271982
-
The African coelacanth genome provides insights into tetrapod evolution
-
Amemiya CT, Alföldi J, Lee AP, Fan S, Philippe H, et al. 2013. The African coelacanth genome provides insights into tetrapod evolution. Nature 496(7445):311-16
-
(2013)
Nature
, vol.496
, Issue.7445
, pp. 311-316
-
-
Amemiya, C.T.1
Alföldi, J.2
Lee, A.P.3
Fan, S.4
Philippe, H.5
-
148
-
-
84885040878
-
Coelacanth genomes reveal signatures for evolutionary transition from water to land
-
Nikaido M, Noguchi H, Nishihara H, Toyoda A, Suzuki Y, et al. 2013. Coelacanth genomes reveal signatures for evolutionary transition from water to land. Genome Res. 23(10):1740-48
-
(2013)
Genome Res.
, vol.23
, Issue.10
, pp. 1740-1748
-
-
Nikaido, M.1
Noguchi, H.2
Nishihara, H.3
Toyoda, A.4
Suzuki, Y.5
-
149
-
-
84999570886
-
Endogenous hepadnaviruses, bornaviruses and circoviruses in snakes
-
Gilbert C, Meik JM, Dashevsky D, Card DC, Castoe TA, Schaack S. 2014. Endogenous hepadnaviruses, bornaviruses and circoviruses in snakes. Proc. Biol. Sci. 281(1791):20141122
-
(2014)
Proc. Biol. Sci.
, vol.281
, Issue.1791
, pp. 20141122
-
-
Gilbert, C.1
Meik, J.M.2
Dashevsky, D.3
Card, D.C.4
Castoe, T.A.5
Schaack, S.6
-
150
-
-
84877256024
-
A locally funded Puerto Rican parrot (Amazona vittata) genome sequencing project increases avian data and advances young researcher education
-
Oleksyk TK, Pombert J-F, Siu D, Mazo-Vargas A, Ramos B, et al. 2012. A locally funded Puerto Rican parrot (Amazona vittata) genome sequencing project increases avian data and advances young researcher education. GigaScience 1(1):14
-
(2012)
GigaScience
, vol.1
, Issue.1
, pp. 14
-
-
Oleksyk, T.K.1
Pombert, J.-F.2
Siu, D.3
Mazo-Vargas, A.4
Ramos, B.5
-
151
-
-
84879696615
-
The duck genome and transcriptome provide insight into an avian influenza virus reservoir species
-
Huang Y, Li Y, Burt DW, Chen H, Zhang Y, et al. 2013. The duck genome and transcriptome provide insight into an avian influenza virus reservoir species. Nat. Genet. 45(7):776-83
-
(2013)
Nat. Genet.
, vol.45
, Issue.7
, pp. 776-783
-
-
Huang, Y.1
Li, Y.2
Burt, D.W.3
Chen, H.4
Zhang, Y.5
-
152
-
-
84877301559
-
Amulti-platform draft de novo genome assembly and comparative analysis for the scarlet macaw (Ara macao)
-
Seabury CM, Dowd SE, Seabury PM, Raudsepp T, Brightsmith DJ, et al. 2013.Amulti-platform draft de novo genome assembly and comparative analysis for the scarlet macaw (Ara macao). PLOS ONE 8(5):e62415
-
(2013)
PLOS ONE
, vol.8
, Issue.5
-
-
Seabury, C.M.1
Dowd, S.E.2
Seabury, P.M.3
Raudsepp, T.4
Brightsmith, D.J.5
-
153
-
-
84874376138
-
Genomic diversity and evolution of the head crest in the rock pigeon
-
Shapiro MD, Kronenberg Z, Li C, Domyan ET, Pan H, et al. 2013. Genomic diversity and evolution of the head crest in the rock pigeon. Science 339(6123):1063-67
-
(2013)
Science
, vol.339
, Issue.6123
, pp. 1063-1067
-
-
Shapiro, M.D.1
Kronenberg, Z.2
Li, C.3
Domyan, E.T.4
Pan, H.5
-
154
-
-
84877922969
-
Next-generation sequencing reveals genomic features in the Japanese quail
-
Kawahara-Miki R, Sano S, Nunome M, Shimmura T, Kuwayama T, et al. 2013. Next-generation sequencing reveals genomic features in the Japanese quail. Genomics 101(6):345-53
-
(2013)
Genomics
, vol.101
, Issue.6
, pp. 345-353
-
-
Kawahara-Miki, R.1
Sano, S.2
Nunome, M.3
Shimmura, T.4
Kuwayama, T.5
-
155
-
-
84878588665
-
Peregrine and saker falcon genome sequences provide insights into evolution of a predatory lifestyle
-
Zhan X, Pan S, Wang J, Dixon A, He J, et al. 2013. Peregrine and saker falcon genome sequences provide insights into evolution of a predatory lifestyle. Nat. Genet. 45(5):563-66
-
(2013)
Nat. Genet.
, vol.45
, Issue.5
, pp. 563-566
-
-
Zhan, X.1
Pan, S.2
Wang, J.3
Dixon, A.4
He, J.5
-
156
-
-
84873700991
-
Insights into the evolution of Darwin's finches from comparative analysis of the Geospiza magnirostris genome sequence
-
RandsCM,Darling A, FujitaM,Kong L, WebsterMT,et al. 2013. Insights into the evolution of Darwin's finches from comparative analysis of the Geospiza magnirostris genome sequence. BMCGenomics 14:95
-
(2013)
BMCGenomics
, vol.14
, pp. 95
-
-
Rands, C.M.1
Darling, A.2
Fujita, M.3
Kong, L.4
Webster, M.T.5
-
157
-
-
84921918950
-
High-coverage sequencing and annotated assemblies of the budgerigar genome
-
Ganapathy G, Howard JT, Ward JM, Li J, Li B, et al. 2014. High-coverage sequencing and annotated assemblies of the budgerigar genome. GigaScience 3:11
-
(2014)
GigaScience
, vol.3
, pp. 11
-
-
Ganapathy, G.1
Howard, J.T.2
Ward, J.M.3
Li, J.4
Li, B.5
-
158
-
-
84875317948
-
Genome sequence of ground tit Pseudopodoces humilis and its adaptation to high altitude
-
Cai Q, Qian X, Lang Y, Luo Y, Xu J, et al. 2013. Genome sequence of ground tit Pseudopodoces humilis and its adaptation to high altitude. Genome Biol. 14(3):R29
-
(2013)
Genome Biol.
, vol.14
, Issue.3
, pp. R29
-
-
Cai, Q.1
Qian, X.2
Lang, Y.3
Luo, Y.4
Xu, J.5
-
159
-
-
84880109446
-
Ground tit genome reveals avian adaptation to living at high altitudes in the Tibetan plateau
-
QuY, Zhao H,HanN, Zhou G, Song G, et al. 2013. Ground tit genome reveals avian adaptation to living at high altitudes in the Tibetan plateau. Nat. Commun. 4(May):2071
-
(2013)
Nat. Commun.
, vol.4
, Issue.May
, pp. 2071
-
-
Qu, Y.1
Zhao, H.2
Han, N.3
Zhou, G.4
Song, G.5
-
160
-
-
84899762926
-
The genome sequence of a widespread apex predator, the golden eagle (Aquila chrysaetos)
-
Doyle JM, Katzner TE, Bloom PH, Ji Y, Wijayawardena BK, Dewoody JA. 2014. The genome sequence of a widespread apex predator, the golden eagle (Aquila chrysaetos). PLOS ONE 9(4):e95599
-
(2014)
PLOS ONE
, vol.9
, Issue.4
-
-
Doyle, J.M.1
Katzner, T.E.2
Bloom, P.H.3
Ji, Y.4
Wijayawardena, B.K.5
Dewoody, J.A.6
-
161
-
-
84897978137
-
Adraft de novo genome assembly for the northern bobwhite (Colinus virginianus) reveals evidence for a rapid decline in effective population size beginning in the late Pleistocene
-
Halley YA, Dowd SE, Decker JE, Seabury PM, Bhattarai E, et al. 2014.Adraft de novo genome assembly for the northern bobwhite (Colinus virginianus) reveals evidence for a rapid decline in effective population size beginning in the late Pleistocene. PLOS ONE 9(3):e90240
-
(2014)
PLOS ONE
, vol.9
, Issue.3
-
-
Halley, Y.A.1
Dowd, S.E.2
Decker, J.E.3
Seabury, P.M.4
Bhattarai, E.5
-
162
-
-
84902665599
-
The genomic landscape underlying phenotypic integrity in the face of gene flow in crows
-
Poelstra JW, Vijay N, Bossu CM, Lantz H, Ryll B, et al. 2014. The genomic landscape underlying phenotypic integrity in the face of gene flow in crows. Science 344(6190):1410-14
-
(2014)
Science
, vol.344
, Issue.6190
, pp. 1410-1414
-
-
Poelstra, J.W.1
Vijay, N.2
Bossu, C.M.3
Lantz, H.4
Ryll, B.5
-
163
-
-
84899476884
-
Whole genome sequencing of the black grouse (Tetrao tetrix): Reference guided assembly suggests faster-Z and MHC evolution
-
Wang B, Ekblom R, Bunikis I, Siitari H, Höglund J. 2014. Whole genome sequencing of the black grouse (Tetrao tetrix): Reference guided assembly suggests faster-Z and MHC evolution. BMC Genomics 15:180
-
(2014)
BMC Genomics
, vol.15
, pp. 180
-
-
Wang, B.1
Ekblom, R.2
Bunikis, I.3
Siitari, H.4
Höglund, J.5
-
164
-
-
84923090876
-
Genomic resources for the endangered Hawaiian honeycreepers
-
Callicrate T, Dikow R, Thomas JW, Mullikin JC, NISC Comp. Seq. Progr., et al. 2014. Genomic resources for the endangered Hawaiian honeycreepers. BMC Genomics 15:1098
-
(2014)
BMC Genomics
, vol.15
, pp. 1098
-
-
Callicrate, T.1
Dikow, R.2
Thomas, J.W.3
Mullikin, J.C.4
NISC Comp. Seq. Progr.5
-
165
-
-
0035895505
-
The sequence of the human genome
-
Venter JC, Adams MD,Myers EW, Li PW, Mural RJ, et al. 2001. The sequence of the human genome. Science 291(5507):1304-51
-
(2001)
Science
, vol.291
, Issue.5507
, pp. 1304-1351
-
-
Venter, J.C.1
Adams, M.D.2
Myers, E.W.3
Li, P.W.4
Mural, R.J.5
-
166
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, et al. 2001. Initial sequencing and analysis of the human genome. Nature 409(6822):860-921
-
(2001)
Nature
, vol.409
, Issue.6822
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
-
167
-
-
1542563409
-
Initial sequencing and comparative analysis of the mouse genome
-
Waterston RH, Lindblad-Toh K, Birney E, Rogers J, Abril JF, et al. 2002. Initial sequencing and comparative analysis of the mouse genome. Nature 420(6915):520-62
-
(2002)
Nature
, vol.420
, Issue.6915
, pp. 520-562
-
-
Waterston, R.H.1
Lindblad-Toh, K.2
Birney, E.3
Rogers, J.4
Abril, J.F.5
-
168
-
-
1842684068
-
Genome sequence of the brown Norway rat yields insights into mammalian evolution
-
Gibbs RA, WeinstockGM,MetzkerML, MuznyDM,Sodergren EJ, et al. 2004. Genome sequence of the brown Norway rat yields insights into mammalian evolution. Nature 428(6982):493-521
-
(2004)
Nature
, vol.428
, Issue.6982
, pp. 493-521
-
-
Gibbs, R.A.1
Weinstock, G.M.2
Metzker, M.L.3
Muzny, D.M.4
Sodergren, E.J.5
-
169
-
-
28644447707
-
Genome sequence, comparative analysis and haplotype structure of the domestic dog
-
Lindblad-Toh K, Wade CM, Mikkelsen TS, Karlsson EK, Jaffe DB, et al. 2005. Genome sequence, comparative analysis and haplotype structure of the domestic dog. Nature 438(7069):803-19
-
(2005)
Nature
, vol.438
, Issue.7069
, pp. 803-819
-
-
Lindblad-Toh, K.1
Wade, C.M.2
Mikkelsen, T.S.3
Karlsson, E.K.4
Jaffe, D.B.5
-
170
-
-
24344500211
-
Initial sequence of the chimpanzee genome and comparison with the human genome
-
Chimpanzee Seq. Anal. Consort. 2005. Initial sequence of the chimpanzee genome and comparison with the human genome. Nature 437(7055):69-87
-
(2005)
Nature
, vol.437
, Issue.7055
, pp. 69-87
-
-
-
171
-
-
36048982458
-
Initial sequence and comparative analysis of the cat genome
-
Pontius JU, Mullikin JC, Smith DR, Lindblad-Toh K, Gnerre S, et al. 2007. Initial sequence and comparative analysis of the cat genome. Genome Res. 17(11):1675-89
-
(2007)
Genome Res.
, vol.17
, Issue.11
, pp. 1675-1689
-
-
Pontius, J.U.1
Mullikin, J.C.2
Smith, D.R.3
Lindblad-Toh, K.4
Gnerre, S.5
-
172
-
-
34247352040
-
Evolutionary and biomedical insights from the rhesus macaque genome
-
Gibbs RA, Rogers J, Katze MG, Bumgarner R, Weinstock GM, et al. 2007. Evolutionary and biomedical insights from the rhesus macaque genome. Science 316(5822):222-34
-
(2007)
Science
, vol.316
, Issue.5822
, pp. 222-234
-
-
Gibbs, R.A.1
Rogers, J.2
Katze, M.G.3
Bumgarner, R.4
Weinstock, G.M.5
-
173
-
-
80755189340
-
Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques
-
Yan G, Zhang G, Fang X, Zhang Y, Li C, et al. 2011. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Nat. Biotechnol. 29(11):1019-23
-
(2011)
Nat. Biotechnol.
, vol.29
, Issue.11
, pp. 1019-1023
-
-
Yan, G.1
Zhang, G.2
Fang, X.3
Zhang, Y.4
Li, C.5
-
174
-
-
34248576291
-
Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences
-
Mikkelsen TS, Wakefield MJ, Aken B, Amemiya CT, Chang JL, et al. 2007. Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences. Nature 447(7141):167-77
-
(2007)
Nature
, vol.447
, Issue.7141
, pp. 167-177
-
-
Mikkelsen, T.S.1
Wakefield, M.J.2
Aken, B.3
Amemiya, C.T.4
Chang, J.L.5
-
175
-
-
77951621301
-
The genome sequence of Taurine cattle: A window to ruminant biology and evolution
-
Bovine Genome Seq. Anal. Consort., Elsik CG, Tellam RL, Worley KC. 2009. The genome sequence of Taurine cattle: a window to ruminant biology and evolution. Science 324(5926):522-28
-
(2009)
Science
, vol.324
, Issue.5926
, pp. 522-528
-
-
Elsik, C.G.1
Tellam, R.L.2
Worley, K.C.3
-
176
-
-
65149096757
-
A whole-genome assembly of the domestic cow, Bos taurus
-
Zimin AV, Delcher AL, Florea L, Kelley DR, Schatz MC, et al. 2009. A whole-genome assembly of the domestic cow, Bos taurus. Genome Biol. 10(4):R42
-
(2009)
Genome Biol.
, vol.10
, Issue.4
, pp. R42
-
-
Zimin, A.V.1
Delcher, A.L.2
Florea, L.3
Kelley, D.R.4
Schatz, M.C.5
-
177
-
-
70449379045
-
Genome sequence, comparative analysis, and population genetics of the domestic horse
-
Wade CM, Giulotto E, Sigurdsson S, Zoli M, Gnerre S, et al. 2009. Genome sequence, comparative analysis, and population genetics of the domestic horse. Science 326(5954):865-67
-
(2009)
Science
, vol.326
, Issue.5954
, pp. 865-867
-
-
Wade, C.M.1
Giulotto, E.2
Sigurdsson, S.3
Zoli, M.4
Gnerre, S.5
-
178
-
-
84901001655
-
Analysis of horse genomes provides insight into the diversification and adaptive evolution of karyotype
-
HuangJ, Zhao Y, ShiraigolW,Li B, Bai D, et al. 2014. Analysis of horse genomes provides insight into the diversification and adaptive evolution of karyotype. Sci. Rep. 4:4958
-
(2014)
Sci. Rep.
, vol.4
, pp. 4958
-
-
Huang, J.1
Zhao, Y.2
Shiraigol, W.3
Li, B.4
Bai, D.5
-
179
-
-
77956463705
-
The sheep genome reference sequence: A work in progress
-
Archibald AL, Cockett NE, Dalrymple BP, Faraut T, Kijas JW, et al. 2010. The sheep genome reference sequence: a work in progress. Anim. Genet. 41(5):449-53
-
(2010)
Anim. Genet.
, vol.41
, Issue.5
, pp. 449-453
-
-
Archibald, A.L.1
Cockett, N.E.2
Dalrymple, B.P.3
Faraut, T.4
Kijas, J.W.5
-
180
-
-
84901852226
-
The sheep genome illuminates biology of the rumen and lipid metabolism
-
Jiang Y, Xie M, Chen W, Talbot R, Maddox JF, et al. 2014. The sheep genome illuminates biology of the rumen and lipid metabolism. Science 344(6188):1168-73
-
(2014)
Science
, vol.344
, Issue.6188
, pp. 1168-1173
-
-
Jiang, Y.1
Xie, M.2
Chen, W.3
Talbot, R.4
Maddox, J.F.5
-
181
-
-
79961191745
-
The genomic sequence of the Chinese hamster ovary (CHO)-K1 cell line
-
Xu X, Nagarajan H, Lewis NE, Pan S, Cai Z, et al. 2011. The genomic sequence of the Chinese hamster ovary (CHO)-K1 cell line. Nat. Biotechnol. 29(8):735-41
-
(2011)
Nat. Biotechnol.
, vol.29
, Issue.8
, pp. 735-741
-
-
Xu, X.1
Nagarajan, H.2
Lewis, N.E.3
Pan, S.4
Cai, Z.5
-
182
-
-
84883807509
-
Chinese hamster genome sequenced from sorted chromosomes
-
Brinkrolf K, Rupp O, Laux H, Kollin F, Ernst W, et al. 2013. Chinese hamster genome sequenced from sorted chromosomes. Nat. Biotechnol. 31(8):694-95
-
(2013)
Nat. Biotechnol.
, vol.31
, Issue.8
, pp. 694-695
-
-
Brinkrolf, K.1
Rupp, O.2
Laux, H.3
Kollin, F.4
Ernst, W.5
-
183
-
-
84883809015
-
Genomic landscapes of Chinese hamster ovary cell lines as revealed by the Cricetulus griseus draft genome
-
Lewis NE, Liu X, Li Y, Nagarajan H, Yerganian G, et al. 2013. Genomic landscapes of Chinese hamster ovary cell lines as revealed by the Cricetulus griseus draft genome. Nat. Biotechnol. 31(8):759-65
-
(2013)
Nat. Biotechnol.
, vol.31
, Issue.8
, pp. 759-765
-
-
Lewis, N.E.1
Liu, X.2
Li, Y.3
Nagarajan, H.4
Yerganian, G.5
-
184
-
-
80855165387
-
Genome sequencing reveals insights into physiology and longevity of the naked mole rat
-
Kim EB, Fang X, Fushan AA, Huang Z, Lobanov AV, et al. 2011. Genome sequencing reveals insights into physiology and longevity of the naked mole rat. Nature 479(7372):223-27
-
(2011)
Nature
, vol.479
, Issue.7372
, pp. 223-227
-
-
Kim, E.B.1
Fang, X.2
Fushan, A.A.3
Huang, Z.4
Lobanov, A.V.5
-
185
-
-
84863098682
-
Whole-genome sequencing and analysis of the Malaysian cynomolgus macaque (Macaca fascicularis) genome
-
Higashino A, Sakate R, Kameoka Y, Takahashi I, Hirata M, et al. 2012. Whole-genome sequencing and analysis of the Malaysian cynomolgus macaque (Macaca fascicularis) genome. Genome Biol. 13(7):R58
-
(2012)
Genome Biol.
, vol.13
, Issue.7
, pp. R58
-
-
Higashino, A.1
Sakate, R.2
Kameoka, Y.3
Takahashi, I.4
Hirata, M.5
-
186
-
-
80051783754
-
Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development
-
Renfree MB, Papenfuss AT, Deakin JE, Lindsay J, Heider T, et al. 2011. Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development. Genome Biol. 12(8):R81
-
(2011)
Genome Biol.
, vol.12
, Issue.8
, pp. R81
-
-
Renfree, M.B.1
Papenfuss, A.T.2
Deakin, J.E.3
Lindsay, J.4
Heider, T.5
-
187
-
-
79251646352
-
Genome-wide polymorphism and comparative analyses in the white-tailed deer (Odocoileus virginianus): A model for conservation genomics
-
Seabury CM, Bhattarai EK, Taylor JF, Viswanathan GG, Cooper SM, et al. 2011. Genome-wide polymorphism and comparative analyses in the white-tailed deer (Odocoileus virginianus): a model for conservation genomics. PLOS ONE 6(1):e15811
-
(2011)
PLOS ONE
, vol.6
, Issue.1
-
-
Seabury, C.M.1
Bhattarai, E.K.2
Taylor, J.F.3
Viswanathan, G.G.4
Cooper, S.M.5
-
188
-
-
79251553493
-
Comparative and demographic analysis of orang-utan genomes
-
Locke DP, Hillier LW, Warren WC, Worley KC, Nazareth LV, et al. 2011. Comparative and demographic analysis of orang-utan genomes. Nature 469(7331):529-33
-
(2011)
Nature
, vol.469
, Issue.7331
, pp. 529-533
-
-
Locke, D.P.1
Hillier, L.W.2
Warren, W.C.3
Worley, K.C.4
Nazareth, L.V.5
-
189
-
-
84863115547
-
Genome sequencing and analysis of the Tasmanian devil and its transmissible cancer
-
Murchison EP, Schulz-Trieglaff OB, Ning Z, Alexandrov LB, Bauer MJ, et al. 2012. Genome sequencing and analysis of the Tasmanian devil and its transmissible cancer. Cell 148(4):780-91
-
(2012)
Cell
, vol.148
, Issue.4
, pp. 780-791
-
-
Murchison, E.P.1
Schulz-Trieglaff, O.B.2
Ning, Z.3
Alexandrov, L.B.4
Bauer, M.J.5
-
190
-
-
84923172778
-
Camelid genomes reveal evolution and adaptation to desert environments
-
Wu H, Guang X, Al-Fageeh MB, Cao J, Pan S, et al. 2014. Camelid genomes reveal evolution and adaptation to desert environments. Nat. Commun. 5:5188
-
(2014)
Nat. Commun.
, vol.5
, pp. 5188
-
-
Wu, H.1
Guang, X.2
Al-Fageeh, M.B.3
Cao, J.4
Pan, S.5
-
191
-
-
84860446904
-
Genome sequence and assembly of Bos indicus
-
Canavez FC, Luche DD, Stothard P, Leite KRM, Sousa-Canavez JM, et al. 2012. Genome sequence and assembly of Bos indicus. J. Hered. 103(3):342-48
-
(2012)
J. Hered.
, vol.103
, Issue.3
, pp. 342-348
-
-
Canavez, F.C.1
Luche, D.D.2
Stothard, P.3
Leite, K.R.M.4
Sousa-Canavez, J.M.5
-
192
-
-
84870786590
-
Genome sequences of wild and domestic Bactrian camels
-
Bactrian Camels Genome Seq. Anal. Consort. 2012. Genome sequences of wild and domestic Bactrian camels. Nat. Commun. 3:1202
-
(2012)
Nat. Commun.
, vol.3
, pp. 1202
-
-
-
193
-
-
84865818257
-
A genome sequence resource for the ayeaye (Daubentonia madagascariensis), a nocturnal lemur from Madagascar
-
Perry GH, Reeves D, Melsted P, Ratan A, Miller W, et al. 2012. A genome sequence resource for the ayeaye (Daubentonia madagascariensis), a nocturnal lemur from Madagascar. Genome Biol. Evol. 4(2):126-35
-
(2012)
Genome Biol. Evol.
, vol.4
, Issue.2
, pp. 126-135
-
-
Perry, G.H.1
Reeves, D.2
Melsted, P.3
Ratan, A.4
Miller, W.5
-
194
-
-
84876061150
-
Aye-aye population genomic analyses highlight an important center of endemism in northern Madagascar
-
Perry GH, Louis EE, Ratan A, Bedoya-Reina OC, Burhans RC, et al. 2013. Aye-aye population genomic analyses highlight an important center of endemism in northern Madagascar. PNAS 110(15):5823-28
-
(2013)
PNAS
, vol.110
, Issue.15
, pp. 5823-5828
-
-
Perry, G.H.1
Louis, E.E.2
Ratan, A.3
Bedoya-Reina, O.C.4
Burhans, R.C.5
-
195
-
-
84863230553
-
Insights into hominid evolution from the gorilla genome sequence
-
Scally A, Dutheil JY, Hillier LW, Jordan GE, Goodhead I, et al. 2012. Insights into hominid evolution from the gorilla genome sequence. Nature 483(7388):169-75
-
(2012)
Nature
, vol.483
, Issue.7388
, pp. 169-175
-
-
Scally, A.1
Dutheil, J.Y.2
Hillier, L.W.3
Jordan, G.E.4
Goodhead, I.5
-
196
-
-
84872783004
-
Comparative analysis of bat genomes provides insight into the evolution of flight and immunity
-
Zhang G, Cowled C, Shi Z, Huang Z, Bishop-Lilly KA, et al. 2013. Comparative analysis of bat genomes provides insight into the evolution of flight and immunity. Science 339(6118):456-60
-
(2013)
Science
, vol.339
, Issue.6118
, pp. 456-460
-
-
Zhang, G.1
Cowled, C.2
Shi, Z.3
Huang, Z.4
Bishop-Lilly, K.A.5
-
197
-
-
84862980012
-
The bonobo genome compared with the chimpanzee and human genomes
-
Prüfer K, Munch K, Hellmann I, Akagi K, Miller JR, et al. 2012. The bonobo genome compared with the chimpanzee and human genomes. Nature 486(7404):527-31
-
(2012)
Nature
, vol.486
, Issue.7404
, pp. 527-531
-
-
Prüfer, K.1
Munch, K.2
Hellmann, I.3
Akagi, K.4
Miller, J.R.5
-
198
-
-
84894634225
-
The sequence and analysis of a Chinese pig genome
-
Fang X, Mou Y, Huang Z, Li Y, Han L, et al. 2012. The sequence and analysis of a Chinese pig genome. GigaScience 1(1):16
-
(2012)
GigaScience
, vol.1
, Issue.1
, pp. 16
-
-
Fang, X.1
Mou, Y.2
Huang, Z.3
Li, Y.4
Han, L.5
-
199
-
-
84869003221
-
Analyses of pig genomes provide insight into porcine demography and evolution
-
Groenen MAM,Archibald AL, UenishiH, Tuggle CK, Takeuchi Y, et al. 2012. Analyses of pig genomes provide insight into porcine demography and evolution. Nature 491(7424):393-98
-
(2012)
Nature
, vol.491
, Issue.7424
, pp. 393-398
-
-
Groenen, M.A.M.1
Archibald, A.L.2
Uenishi, H.3
Tuggle, C.K.4
Takeuchi, Y.5
-
200
-
-
84885574505
-
Genome-wide signatures of convergent evolution in echolocating mammals
-
Parker J, Tsagkogeorga G, Cotton JA, Liu Y, Provero P, et al. 2013. Genome-wide signatures of convergent evolution in echolocating mammals. Nature 502(7470):228-31
-
(2013)
Nature
, vol.502
, Issue.7470
, pp. 228-231
-
-
Parker, J.1
Tsagkogeorga, G.2
Cotton, J.A.3
Liu, Y.4
Provero, P.5
-
201
-
-
84889244482
-
Baiji genomes reveal low genetic variability and new insights into secondary aquatic adaptations
-
Zhou X, Sun F, Xu S, Fan G, Zhu K, et al. 2013. Baiji genomes reveal low genetic variability and new insights into secondary aquatic adaptations. Nat. Commun. 4:2708
-
(2013)
Nat. Commun.
, vol.4
, pp. 2708
-
-
Zhou, X.1
Sun, F.2
Xu, S.3
Fan, G.4
Zhu, K.5
-
202
-
-
84892877574
-
The tiger genome and comparative analysis with lion and snow leopard genomes
-
Cho YS, HuL, Hou H, Lee H, Xu J, et al. 2013. The tiger genome and comparative analysis with lion and snow leopard genomes. Nat. Commun. 4(May):2433
-
(2013)
Nat. Commun.
, vol.4
, Issue.May
, pp. 2433
-
-
Cho, Y.S.1
Hu, L.2
Hou, H.3
Lee, H.4
Xu, J.5
-
203
-
-
84878718523
-
Draft genome sequence of the Tibetan antelope
-
Ge R-L, Cai Q, Shen Y-Y, San A,MaL, et al. 2013. Draft genome sequence of the Tibetan antelope. Nat. Commun. 4(May):1858
-
(2013)
Nat. Commun.
, vol.4
, Issue.May
, pp. 1858
-
-
Ge, R.-L.1
Cai, Q.2
Shen, Y.-Y.3
San, A.4
Ma, L.5
-
204
-
-
84874595353
-
Genome of the Chinese tree shrew
-
Fan Y, Huang Z-Y, Cao C-C, Chen C-S, Chen Y-X, et al. 2013. Genome of the Chinese tree shrew. Nat. Commun. 4:1426
-
(2013)
Nat. Commun.
, vol.4
, pp. 1426
-
-
Fan, Y.1
Huang, Z.-Y.2
Cao, C.-C.3
Chen, C.-S.4
Chen, Y.-X.5
-
205
-
-
84905588751
-
The common marmoset genome provides insight into primate biology and evolution
-
Marmoset Genome Seq. Anal. Consort. 2014. The common marmoset genome provides insight into primate biology and evolution. Nat. Genet. 46:850-57
-
(2014)
Nat. Genet.
, vol.46
, pp. 850-857
-
-
-
206
-
-
84901413625
-
Whole-genome sequencing of Tibetan macaque (Macaca thibetana) provides new insight into the macaque evolutionary history
-
Fan Z, Zhao G, Li P, Osada N, Xing J, et al. 2014. Whole-genome sequencing of Tibetan macaque (Macaca thibetana) provides new insight into the macaque evolutionary history. Mol. Biol. Evol. 31(6):1475-89
-
(2014)
Mol. Biol. Evol.
, vol.31
, Issue.6
, pp. 1475-1489
-
-
Fan, Z.1
Zhao, G.2
Li, P.3
Osada, N.4
Xing, J.5
-
207
-
-
84901937260
-
Genome-wide adaptive complexes to underground stresses in blind mole rats Spalax
-
Fang X, Nevo E, Han L, Levanon EY, Zhao J, et al. 2014. Genome-wide adaptive complexes to underground stresses in blind mole rats Spalax. Nat. Commun. 5:3966
-
(2014)
Nat. Commun.
, vol.5
, pp. 3966
-
-
Fang, X.1
Nevo, E.2
Han, L.3
Levanon, E.Y.4
Zhao, J.5
-
208
-
-
84900301308
-
Population genomics reveal recent speciation and rapid evolutionary adaptation in polar bears
-
Liu S, Lorenzen ED, Fumagalli M, Li B, Harris K, et al. 2014. Population genomics reveal recent speciation and rapid evolutionary adaptation in polar bears. Cell 157(4):785-94
-
(2014)
Cell
, vol.157
, Issue.4
, pp. 785-794
-
-
Liu, S.1
Lorenzen, E.D.2
Fumagalli, M.3
Li, B.4
Harris, K.5
-
209
-
-
84907284157
-
Gibbon genome and the fast karyotype evolution of small apes
-
Carbone L, Harris RA, Gnerre S, Veeramah KR, Lorente-Galdos B, et al. 2014. Gibbon genome and the fast karyotype evolution of small apes. Nature 513(7517):195-201
-
(2014)
Nature
, vol.513
, Issue.7517
, pp. 195-201
-
-
Carbone, L.1
Harris, R.A.2
Gnerre, S.3
Veeramah, K.R.4
Lorente-Galdos, B.5
-
210
-
-
84922545061
-
Whole-genome sequencing of the snub-nosed monkey provides insights into folivory and evolutionary history
-
Zhou X, Wang B, Pan Q, Zhang J, Kumar S, et al. 2014. Whole-genome sequencing of the snub-nosed monkey provides insights into folivory and evolutionary history. Nat. Genet. 46(12):1303-10
-
(2014)
Nat. Genet.
, vol.46
, Issue.12
, pp. 1303-1310
-
-
Zhou, X.1
Wang, B.2
Pan, Q.3
Zhang, J.4
Kumar, S.5
-
211
-
-
79952178131
-
High-quality draft assemblies of mammalian genomes from massively parallel sequence data
-
Gnerre S, MacCallum I, Przybylski D, Ribeiro FJ, Burton JN, et al. 2011. High-quality draft assemblies of mammalian genomes from massively parallel sequence data. PNAS 108(4):1513-18
-
(2011)
PNAS
, vol.108
, Issue.4
, pp. 1513-1518
-
-
Gnerre, S.1
MacCallum, I.2
Przybylski, D.3
Ribeiro, F.J.4
Burton, J.N.5
-
212
-
-
84942887758
-
Soapdenovo2: An empirically improved memoryefficient short-read de novo assembler
-
Luo R, Liu B, Xie Y, Li Z, Huang W, et al. 2012. Soapdenovo2: an empirically improved memoryefficient short-read de novo assembler. GigaScience 1(1):18
-
(2012)
GigaScience
, vol.1
, Issue.1
, pp. 18
-
-
Luo, R.1
Liu, B.2
Xie, Y.3
Li, Z.4
Huang, W.5
-
213
-
-
0031586003
-
Prediction of complete gene structures in human genomic DNA
-
Burge C, Karlin S. 1997. Prediction of complete gene structures in human genomic DNA. J. Mol. Biol. 268(1):78-94
-
(1997)
J. Mol. Biol.
, vol.268
, Issue.1
, pp. 78-94
-
-
Burge, C.1
Karlin, S.2
-
214
-
-
33747830848
-
AUGUSTUS: Ab initio prediction of alternative transcripts
-
Stanke M, Keller O, Gunduz I, Hayes A, Waack S, Morgenstern B. 2006. AUGUSTUS: ab initio prediction of alternative transcripts. Nucleic Acids Res. 34:W435-39
-
(2006)
Nucleic Acids Res
, vol.34
, pp. W435-W439
-
-
Stanke, M.1
Keller, O.2
Gunduz, I.3
Hayes, A.4
Waack, S.5
Morgenstern, B.6
-
216
-
-
24044447664
-
Automated generation of heuristics for biological sequence comparison
-
Slater GSC, Birney E. 2005. Automated generation of heuristics for biological sequence comparison. BMC Bioinform. 6:31
-
(2005)
BMC Bioinform.
, vol.6
, pp. 31
-
-
Slater, G.S.C.1
Birney, E.2
-
217
-
-
46649115430
-
Splign: Algorithms for computing spliced alignments with identification of paralogs
-
Kapustin Y, Souvorov A, Tatusova T, Lipman D. 2008. Splign: algorithms for computing spliced alignments with identification of paralogs. Biol. Direct 3:20
-
(2008)
Biol. Direct
, vol.3
, pp. 20
-
-
Kapustin, Y.1
Souvorov, A.2
Tatusova, T.3
Lipman, D.4
-
218
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, et al. 2009. The Sequence Alignment/Map format and SAMtools. Bioinformatics 25(16):2078-79
-
(2009)
Bioinformatics
, vol.25
, Issue.16
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
-
219
-
-
79960405019
-
The variant call format and VCFtools
-
Danecek P, Auton A, Abecasis G, Albers CA, Banks E, et al. 2011. The variant call format and VCFtools. Bioinformatics 27(15):2156-58
-
(2011)
Bioinformatics
, vol.27
, Issue.15
, pp. 2156-2158
-
-
Danecek, P.1
Auton, A.2
Abecasis, G.3
Albers, C.A.4
Banks, E.5
-
220
-
-
77956295988
-
The genome analysis toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
-
McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, et al. 2010. The genome analysis toolkit : a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 20(9):1297-303
-
(2010)
Genome Res.
, vol.20
, Issue.9
, pp. 1297-1303
-
-
McKenna, A.1
Hanna, M.2
Banks, E.3
Sivachenko, A.4
Cibulskis, K.5
-
221
-
-
69549116107
-
BreakDancer: An algorithm for high-resolution mapping of genomic structural variation
-
Chen K, Wallis JW,McLellan MD, Larson DE, Kalicki JM, et al. 2013. BreakDancer: an algorithm for high-resolution mapping of genomic structural variation. Nat. Methods 6(9):677-81
-
(2013)
Nat. Methods
, vol.6
, Issue.9
, pp. 677-681
-
-
Chen, K.1
Wallis, J.W.2
McLellan, M.D.3
Larson, D.E.4
Kalicki, J.M.5
-
222
-
-
77954205450
-
Next-generation VariationHunter: Combinatorial algorithms for transposon insertion discovery
-
Hormozdiari F, Hajirasouliha I, Dao P, Hach F, Yorukoglu D, et al. 2010. Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery. Bioinformatics 26(12):i350-57
-
(2010)
Bioinformatics
, vol.26
, Issue.12
, pp. i350-i357
-
-
Hormozdiari, F.1
Hajirasouliha, I.2
Dao, P.3
Hach, F.4
Yorukoglu, D.5
-
223
-
-
84856246802
-
De novo assembly and genotyping of variants using colored de Bruijn graphs
-
Iqbal Z, Caccamo M, Turner I, Flicek P, McVean G. 2012. De novo assembly and genotyping of variants using colored de Bruijn graphs. Nat. Genet. 44(2):226-32
-
(2012)
Nat. Genet.
, vol.44
, Issue.2
, pp. 226-232
-
-
Iqbal, Z.1
Caccamo, M.2
Turner, I.3
Flicek, P.4
McVean, G.5
-
224
-
-
84870777273
-
De novo detection of copy number variation by co-assembly
-
Nijkamp JF, van den Broek MA, Geertman J-MA, Reinders MJT, Daran J-MG, de Ridder D. 2012. De novo detection of copy number variation by co-assembly. Bioinformatics 28(24):3195-202
-
(2012)
Bioinformatics
, vol.28
, Issue.24
, pp. 3195-3202
-
-
Nijkamp, J.F.1
Van Den Broek, M.A.2
Geertman, J.-M.A.3
Reinders, M.J.T.4
Daran, J.-M.G.5
De Ridder, D.6
-
225
-
-
70349556543
-
Personalized copy number and segmental duplication maps using next-generation sequencing
-
Alkan C, Kidd JM,Marques-Bonet T, Aksay G, Antonacci F, et al. 2009. Personalized copy number and segmental duplication maps using next-generation sequencing. Nat. Genet. 41(10):1061-67
-
(2009)
Nat. Genet.
, vol.41
, Issue.10
, pp. 1061-1067
-
-
Alkan, C.1
Kidd, J.M.2
Marques-Bonet, T.3
Aksay, G.4
Antonacci, F.5
-
226
-
-
84861400043
-
Cn.MOPS: Mixture of Poissons for discovering copy number variations in next-generation sequencing data with a low false discovery rate
-
Klambauer G, Schwarzbauer K, Mayr A, Clevert DA, Mitterecker A, et al. 2012. Cn.MOPS: mixture of Poissons for discovering copy number variations in next-generation sequencing data with a low false discovery rate. Nucleic Acids Res. 40(9):e69
-
(2012)
Nucleic Acids Res.
, vol.40
, Issue.9
, pp. e69
-
-
Klambauer, G.1
Schwarzbauer, K.2
Mayr, A.3
Clevert, D.A.4
Mitterecker, A.5
-
227
-
-
32144436709
-
WindowMasker: Window-based masker for sequenced genomes
-
Morgulis A, Gertz EM, Schäffer AA, Agarwala R. 2006. WindowMasker: window-based masker for sequenced genomes. Bioinformatics 22(2):134-41
-
(2006)
Bioinformatics
, vol.22
, Issue.2
, pp. 134-141
-
-
Morgulis, A.1
Gertz, E.M.2
Schäffer, A.A.3
Agarwala, R.4
-
228
-
-
0033555906
-
Tandem repeats finder: A program to analyze DNA sequences
-
Benson G. 1999. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 27(2):573-80
-
(1999)
Nucleic Acids Res.
, vol.27
, Issue.2
, pp. 573-580
-
-
Benson, G.1
-
229
-
-
33745617710
-
A fast and symmetric dust implementation to mask low-complexity DNA sequences
-
Morgulis A, Gertz EM, Schäffer AA, Agarwala R. 2006. A fast and symmetric dust implementation to mask low-complexity DNA sequences. J. Comput. Biol. 13(5):1028-40
-
(2006)
J. Comput. Biol.
, vol.13
, Issue.5
, pp. 1028-1040
-
-
Morgulis, A.1
Gertz, E.M.2
Schäffer, A.A.3
Agarwala, R.4
-
230
-
-
0037854629
-
Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare l.)
-
Thiel T, Michalek W, Varshney RK, Graner A. 2003. Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare l.). Theor. Appl. Genet. 106(3):411-22
-
(2003)
Theor. Appl. Genet.
, vol.106
, Issue.3
, pp. 411-422
-
-
Thiel, T.1
Michalek, W.2
Varshney, R.K.3
Graner, A.4
-
231
-
-
84923194210
-
GMATo: A novel tool for the identification and analysis of microsatellites in large genomes
-
Wang X, Lu P, Luo Z. 2013. GMATo: a novel tool for the identification and analysis of microsatellites in large genomes. Bioinformation 9(10):541-44
-
(2013)
Bioinformation
, vol.9
, Issue.10
, pp. 541-544
-
-
Wang, X.1
Lu, P.2
Luo, Z.3
-
232
-
-
34548590461
-
Automated recognition of retroviral sequences in genomic data-RetroTector©
-
Sperber GO, Airola T, Jern P, Blomberg J. 2007. Automated recognition of retroviral sequences in genomic data-RetroTector©. Nucleic Acids Res. 35(15):4964-76
-
(2007)
Nucleic Acids Res.
, vol.35
, Issue.15
, pp. 4964-4976
-
-
Sperber, G.O.1
Airola, T.2
Jern, P.3
Blomberg, J.4
-
233
-
-
0037433054
-
LTR-STRUC: A novel search and identification program for LTR retrotransposons
-
McCarthy EM, McDonald JF. 2003. LTR-STRUC: a novel search and identification program for LTR retrotransposons. Bioinformatics 19(3):362-67
-
(2003)
Bioinformatics
, vol.19
, Issue.3
, pp. 362-367
-
-
McCarthy, E.M.1
McDonald, J.F.2
-
234
-
-
34547592867
-
LTR-FINDER: An efficient tool for the prediction of full-length LTR retrotransposons
-
Xu Z, Wang H. 2007. LTR-FINDER: an efficient tool for the prediction of full-length LTR retrotransposons. Nucleic Acids Res. 35:W265-68
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. W265-W268
-
-
Xu, Z.1
Wang, H.2
-
235
-
-
39749179047
-
LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons
-
Ellinghaus D, Kurtz S, Willhoeft U. 2008. LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons. BMC Bioinform. 9(1):18
-
(2008)
BMC Bioinform.
, vol.9
, Issue.1
, pp. 18
-
-
Ellinghaus, D.1
Kurtz, S.2
Willhoeft, U.3
-
236
-
-
46449091350
-
DupMasker: A tool for annotating primate segmental duplications
-
Jiang Z, Hubley R, Smit A, Eichler EE. 2008. DupMasker: a tool for annotating primate segmental duplications. Genome Res. 18(8):1362-68
-
(2008)
Genome Res.
, vol.18
, Issue.8
, pp. 1362-1368
-
-
Jiang, Z.1
Hubley, R.2
Smit, A.3
Eichler, E.E.4
-
237
-
-
38349097919
-
MiRFinder: An improved approach and software implementation for genome-wide fast microRNA precursor scans
-
Huang T-H, Fan B, Rothschild MF, Hu Z-L, Li K, Zhao S-H. 2007. MiRFinder: an improved approach and software implementation for genome-wide fast microRNA precursor scans. BMC Bioinform. 8:341
-
(2007)
BMC Bioinform.
, vol.8
, pp. 341
-
-
Huang, T.-H.1
Fan, B.2
Rothschild, M.F.3
Hu, Z.-L.4
Li, K.5
Zhao, S.-H.6
-
239
-
-
82055164092
-
ViennaRNA package 2.0
-
Lorenz R, Bernhart SH, Höner zu Siederdissen C, Tafer H, Flamm C, et al. 2011. ViennaRNA package 2.0. Algorithms Mol. Biol. 6:26
-
(2011)
Algorithms Mol. Biol.
, vol.6
, pp. 26
-
-
Lorenz, R.1
Bernhart, S.H.2
Höner Zu Siederdissen, C.3
Tafer, H.4
Flamm, C.5
-
240
-
-
79957868920
-
Bismark: A flexible aligner and methylation caller for Bisulfite-Seq applications
-
Krueger F, Andrews SR. 2011. Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications. Bioinformatics 27(11):1571-72
-
(2011)
Bioinformatics
, vol.27
, Issue.11
, pp. 1571-1572
-
-
Krueger, F.1
Andrews, S.R.2
-
241
-
-
77951125407
-
BS seeker: Precise mapping for bisulfite sequencing software
-
Chen P, Cokus SJ, Pellegrini M. 2010. BS seeker: precise mapping for bisulfite sequencing software. BMC Bioinform. 11:203
-
(2010)
BMC Bioinform.
, vol.11
, pp. 203
-
-
Chen, P.1
Cokus, S.J.2
Pellegrini, M.3
-
242
-
-
84887077170
-
BS-Seeker2: A versatile aligning pipeline for bisulfite sequencing data
-
GuoW, Fiziev P, YanW, Cokus S, Sun X, et al. 2013. BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data. BMC Genomics 14(1):774
-
(2013)
BMC Genomics
, vol.14
, Issue.1
, pp. 774
-
-
Guo, W.1
Fiziev, P.2
Yan, W.3
Cokus, S.4
Sun, X.5
-
243
-
-
84871793059
-
FadE: Whole genome methylation analysis for multiple sequencing platforms
-
Souaiaia T, Zhang Z, Chen T. 2013. FadE: whole genome methylation analysis for multiple sequencing platforms. Nucleic Acids Res. 41(1):e14
-
(2013)
Nucleic Acids Res.
, vol.41
, Issue.1
, pp. e14
-
-
Souaiaia, T.1
Zhang, Z.2
Chen, T.3
-
244
-
-
33646856440
-
CAFÉ: A computational tool for the study of gene family evolution
-
De Bie T, Cristianini N, Demuth JP, Hahn MW. 2006. CAFÉ: a computational tool for the study of gene family evolution. Bioinformatics 22(10):1269-71
-
(2006)
Bioinformatics
, vol.22
, Issue.10
, pp. 1269-1271
-
-
De Bie, T.1
Cristianini, N.2
Demuth, J.P.3
Hahn, M.W.4
-
245
-
-
84888258833
-
Estimating gene gain and loss rates in the presence of error in genome assembly and annotation using CAFÉ 3
-
Han MV, Thomas GWC, Lugo-Martinez J, Hahn MW. 2013. Estimating gene gain and loss rates in the presence of error in genome assembly and annotation using CAFÉ 3. Mol. Biol. Evol. 30(8):1987-97
-
(2013)
Mol. Biol. Evol.
, vol.30
, Issue.8
, pp. 1987-1997
-
-
Han, M.V.1
Thomas, G.W.C.2
Lugo-Martinez, J.3
Hahn, M.W.4
-
246
-
-
23744458086
-
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
-
Siepel A, Bejerano G, Pedersen JS, Hinrichs AS, Hou M, et al. 2005. Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. Genome Res. 15(8):1034-50
-
(2005)
Genome Res.
, vol.15
, Issue.8
, pp. 1034-1050
-
-
Siepel, A.1
Bejerano, G.2
Pedersen, J.S.3
Hinrichs, A.S.4
Hou, M.5
-
247
-
-
66349086264
-
Identifying novel constrained elements by exploiting biased substitution patterns
-
Garber M, Guttman M, Clamp M, Zody MC, Friedman N, Xie X. 2009. Identifying novel constrained elements by exploiting biased substitution patterns. Bioinformatics 25(12):i54-62
-
(2009)
Bioinformatics
, vol.25
, Issue.12
, pp. i54-i62
-
-
Garber, M.1
Guttman, M.2
Clamp, M.3
Zody, M.C.4
Friedman, N.5
Xie, X.6
-
248
-
-
34547803197
-
PAML 4: Phylogenetic analysis by maximum likelihood
-
Yang Z. 2007. PAML 4: Phylogenetic analysis by maximum likelihood. Mol. Biol. Evol. 24(8):1586-91
-
(2007)
Mol. Biol. Evol.
, vol.24
, Issue.8
, pp. 1586-1591
-
-
Yang, Z.1
-
249
-
-
49649129741
-
LOSITAN: A workbench to detect molecular adaptation based on a Fst-outlier method
-
Antao T, Lopes A, Lopes RJ, Beja-Pereira A, Luikart G. 2008. LOSITAN: a workbench to detect molecular adaptation based on a Fst-outlier method. BMC Bioinform. 9:323
-
(2008)
BMC Bioinform.
, vol.9
, pp. 323
-
-
Antao, T.1
Lopes, A.2
Lopes, R.J.3
Beja-Pereira, A.4
Luikart, G.5
-
250
-
-
34548292504
-
PLINK: A tool set for wholegenome association and population-based linkage analyses
-
Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira MAR, et al. 2007. PLINK: a tool set for wholegenome association and population-based linkage analyses. Am. J. Hum. Genet. 81(3):559-75
-
(2007)
Am. J. Hum. Genet.
, vol.81
, Issue.3
, pp. 559-575
-
-
Purcell, S.1
Neale, B.2
Todd-Brown, K.3
Thomas, L.4
Ferreira, M.A.R.5
-
251
-
-
84859755518
-
rehh: AnRpackage to detect footprints of selection in genome-wide SNP data from haplotype structure
-
Gautier M, Vitalis R. 2012. rehh: anRpackage to detect footprints of selection in genome-wide SNP data from haplotype structure. Bioinformatics 28(8):1176-77
-
(2012)
Bioinformatics
, vol.28
, Issue.8
, pp. 1176-1177
-
-
Gautier, M.1
Vitalis, R.2
-
252
-
-
79960264362
-
Full-length transcriptome assembly from RNA-seq data without a reference genome
-
Grabherr MG, Haas BJ, Yassour M, Levin JZ, Thompson DA, et al. 2011. Full-length transcriptome assembly from RNA-seq data without a reference genome. Nat. Biotechnol. 29(7):644-52
-
(2011)
Nat. Biotechnol.
, vol.29
, Issue.7
, pp. 644-652
-
-
Grabherr, M.G.1
Haas, B.J.2
Yassour, M.3
Levin, J.Z.4
Thompson, D.A.5
-
253
-
-
65449136284
-
TopHat: Discovering splice junctions with RNA-seq
-
Trapnell C, Pachter L, Salzberg SL. 2009. TopHat: discovering splice junctions with RNA-seq. Bioinformatics 25(9):1105-11
-
(2009)
Bioinformatics
, vol.25
, Issue.9
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
254
-
-
84871809302
-
STAR: Ultrafast universal RNA-seq aligner
-
Dobin A, Davis CA, Schlesinger F, Drenkow J, Zaleski C, et al. 2013. STAR: ultrafast universal RNA-seq aligner. Bioinformatics 29(1):15-21
-
(2013)
Bioinformatics
, vol.29
, Issue.1
, pp. 15-21
-
-
Dobin, A.1
Davis, C.A.2
Schlesinger, F.3
Drenkow, J.4
Zaleski, C.5
-
255
-
-
22744440499
-
Dynamics of mammalian chromosome evolution inferred from multispecies comparative maps
-
Murphy WJ, Larkin DM, Everts-van der Wind A, Bourque G, Tesler G, et al. 2005. Dynamics of mammalian chromosome evolution inferred from multispecies comparative maps. Science 309 (5734):613-17
-
(2005)
Science
, vol.309
, Issue.5734
, pp. 613-617
-
-
Murphy, W.J.1
Larkin, D.M.2
Everts-van Der Wind, A.3
Bourque, G.4
Tesler, G.5
-
256
-
-
66049138940
-
Breakpoint regions and homologous synteny blocks in chromosomes have different evolutionary histories
-
Larkin DM, Pape G, Donthu R, Auvil L, Welge M, Lewin HA. 2009. Breakpoint regions and homologous synteny blocks in chromosomes have different evolutionary histories. Genome Res. 19(5):770-77
-
(2009)
Genome Res.
, vol.19
, Issue.5
, pp. 770-777
-
-
Larkin, D.M.1
Pape, G.2
Donthu, R.3
Auvil, L.4
Welge, M.5
Lewin, H.A.6
-
257
-
-
77952854165
-
Genome-wide synteny through highly sensitive sequence alignment: Satsuma
-
Grabherr MG, Russell P, Meyer M, Mauceli E, Alföldi J, et al. 2010. Genome-wide synteny through highly sensitive sequence alignment: Satsuma. Bioinformatics 26(9):1145-51
-
(2010)
Bioinformatics
, vol.26
, Issue.9
, pp. 1145-1151
-
-
Grabherr, M.G.1
Russell, P.2
Meyer, M.3
Mauceli, E.4
Alföldi, J.5
-
258
-
-
33748260755
-
SyMAP: A system for discovering and viewing syntenic regions of FPC maps
-
Soderlund C, Nelson W, Shoemaker A, Paterson A. 2006. SyMAP: a system for discovering and viewing syntenic regions of FPC maps. Genome Res. 16(9):1159-68
-
(2006)
Genome Res.
, vol.16
, Issue.9
, pp. 1159-1168
-
-
Soderlund, C.1
Nelson, W.2
Shoemaker, A.3
Paterson, A.4
-
260
-
-
0036079158
-
The human genome browser at UCSC
-
Kent WJ, Sugnet CW, Furey TS, Roskin KM, Pringle TH, et al. 2002. The human genome browser at UCSC. Genome Res. 12(6):996-1006
-
(2002)
Genome Res.
, vol.12
, Issue.6
, pp. 996-1006
-
-
Kent, W.J.1
Sugnet, C.W.2
Furey, T.S.3
Roskin, K.M.4
Pringle, T.H.5
-
261
-
-
78651271733
-
Integrative genomics viewer
-
Robinson JT, Thorvaldsdóttir H, Winckler W, Guttman M, Lander ES, et al. 2011. Integrative genomics viewer. Nat. Biotechnol. 29(1):24-26
-
(2011)
Nat. Biotechnol.
, vol.29
, Issue.1
, pp. 24-26
-
-
Robinson, J.T.1
Thorvaldsdóttir, H.2
Winckler, W.3
Guttman, M.4
Lander, E.S.5
-
262
-
-
84875634162
-
Integrative Genomics Viewer (IGV): Highperformance genomics data visualization and exploration
-
Thorvaldsdóttir H, Robinson JT, Mesirov JP. 2013. Integrative Genomics Viewer (IGV): highperformance genomics data visualization and exploration. Brief. Bioinform. 14(2):178-92
-
(2013)
Brief. Bioinform.
, vol.14
, Issue.2
, pp. 178-192
-
-
Thorvaldsdóttir, H.1
Robinson, J.T.2
Mesirov, J.P.3
-
263
-
-
84886811866
-
Computational tools for copy number variation (CNV) detection using next-generation sequencing data: Features and perspectives
-
Zhao M, Wang Q, Wang Q, Jia P, Zhao Z. 2013. Computational tools for copy number variation (CNV) detection using next-generation sequencing data: features and perspectives. BMC Bioinform. 14 (Suppl. 11):S1
-
(2013)
BMC Bioinform.
, vol.14
, pp. S1
-
-
Zhao, M.1
Wang, Q.2
Wang, Q.3
Jia, P.4
Zhao, Z.5
-
264
-
-
49949114192
-
Detecting short tandem repeats from genome data: Opening the software black box
-
Merkel A, Gemmell N. 2008. Detecting short tandem repeats from genome data: opening the software black box. Brief. Bioinform. 9(5):355-66
-
(2008)
Brief. Bioinform.
, vol.9
, Issue.5
, pp. 355-366
-
-
Merkel, A.1
Gemmell, N.2
-
265
-
-
84872770867
-
Review of tandem repeat search tools: A systematic approach to evaluating algorithmic performance
-
Lim KG, Kwoh CK, Hsu LY, Wirawan A. 2013. Review of tandem repeat search tools: a systematic approach to evaluating algorithmic performance. Brief. Bioinform. 14(1):67-81
-
(2013)
Brief. Bioinform.
, vol.14
, Issue.1
, pp. 67-81
-
-
Lim, K.G.1
Kwoh, C.K.2
Hsu, L.Y.3
Wirawan, A.4
-
267
-
-
84884467851
-
Recent human adaptation: Genomic approaches, interpretation and insights
-
Scheinfeldt LB, Tishkoff SA. 2013. Recent human adaptation: genomic approaches, interpretation and insights. Nat. Rev. Genet. 14(10):692-702
-
(2013)
Nat. Rev. Genet.
, vol.14
, Issue.10
, pp. 692-702
-
-
Scheinfeldt, L.B.1
Tishkoff, S.A.2
-
271
-
-
84901236518
-
Ancient DNAreveals elephant birds and kiwi are sister taxa and clarifies ratite bird evolution
-
Mitchell KJ, Llamas B, Soubrier J, Rawlence NJ, Worthy TH, et al. 2014. Ancient DNAreveals elephant birds and kiwi are sister taxa and clarifies ratite bird evolution. Science 344:898-900
-
(2014)
Science
, vol.344
, pp. 898-900
-
-
Mitchell, K.J.1
Llamas, B.2
Soubrier, J.3
Rawlence, N.J.4
Worthy, T.H.5
-
272
-
-
0025131820
-
Radiation hybrid mapping: A somatic cell genetic method for constructing high-resolution maps of mammalian chromosomes
-
Cox DR, Burmeister M, Price ER, Kim S, Myers RM. 1990. Radiation hybrid mapping: a somatic cell genetic method for constructing high-resolution maps of mammalian chromosomes. Science 250 (4978):245-50
-
(1990)
Science
, vol.250
, Issue.4978
, pp. 245-250
-
-
Cox, D.R.1
Burmeister, M.2
Price, E.R.3
Kim, S.4
Myers, R.M.5
-
273
-
-
84975742565
-
A map of human genome variation from population-scale sequencing
-
Abecasis GR, Altshuler D, Auton A, Brooks LD, Durbin RM, et al. 2010. A map of human genome variation from population-scale sequencing. Nature 467(7319):1061-73
-
(2010)
Nature
, vol.467
, Issue.7319
, pp. 1061-1073
-
-
Abecasis, G.R.1
Altshuler, D.2
Auton, A.3
Brooks, L.D.4
Durbin, R.M.5
|