LTR STRUC: A novel search and identification program for LTR retrotransposons

Bioinformatics

Volumn 19, Issue 3, 2003, Pages 362-367

  McCarthy, Eugene M ^a   McDonald, John F ^a  

^a University of Georgia ^*  (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

ANALYTIC METHOD; ARTICLE; AUTOANALYZER; COMPUTER ANALYSIS; COMPUTER PROGRAM; CONTROLLED STUDY; DATA ANALYSIS; GENE STRUCTURE; GENETIC ALGORITHM; GENETIC DATABASE; LONG TERMINAL REPEAT; OPEN READING FRAME; PRIORITY JOURNAL; RELIABILITY; RETROPOSON; RETROVIRUS; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; STRUCTURE ANALYSIS;

EUKARYOTA; UNIDENTIFIED RETROVIRUS;

EID: 0037433054     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btf878     Document Type: Article

References (7)

1. Bowen,N. and McDonald,J.F. (1999) Genomic analysis of Caenorhabditis elegans reveals ancient families of retroviral-like elements. Genome Res., 9, 924-935.
2. Bowen,N. and McDonald,J.F. (2000) Drosophila euchromatic LTR retrotransposons are much younger than the host species in which they reside. Genome Res., 11, 1527-1540.
3. Coffin,J.M., Hughes,S.H. and Varmus,H.E. (1997) Retroviruses, Plainview, Coldspring Harbor Laboratory Press, NY.
4. McCarthy,E.M., Liu,J., Gao,L. and McDonald,J.F. (2002) LTR Retrotransposons of Oryza sativa. Genome Biol., 3, research 0053.1-0053.11.
5. Promislow,D.E., Jordan,I.K. and McDonald,J.F. (1999) Genomic demography, a life history analysis of transposable element evolution. Proc. Roy. Soc. Lon. B Biol., 266, 1555-1560.
6. Witte,C.P., Le,Q.H., Bureau,T. and Kumar,A. (2001) Terminal-repeat retrotransposons in miniature (TRIM) are involved in restructuring plant genomes. PNAS, USA, 98, 13778-13783.
7. Yoder,J.A., Walsh,C.P. and Bestor,T.H. (1997) Cytosine methylation and the ecology of intragenomic parasites. Trends Genet., 13, 335-340.