Assessment of transcript reconstruction methods for RNA-seq

Nature Methods

Volumn 10, Issue 12, 2013, Pages 1177-1184

  Steijger, Tamara ^a   Abril, Josep F ^b   Engström, Pär G ^a,h   Kokocinski, Felix ^c   Akerman, Martin ⁱ   Alioto, Tyler ^j   Ambrosini, Giovanna ^k,l   Antonarakis, Stylianos E ^m   Behr, Jonas ^n,o   Bertone, Paul ^a,f,g   Bohnert, Regina ^o   Bucher, Philipp ^k,l   Cloonan, Nicole ^p   Derrien, Thomas ^d   Djebali, Sarah ^e   Du, Jiang ^q   Dudoit, Sandrine ^r   Gerstein, Mark ^q,s   Gingeras, Thomas R ⁱ   Gonzalez, David ^d   Grimmond, Sean M ^p   Guigó, Roderic ^d,e   Habegger, Lukas ^s   Harrow, Jennifer ^c   Hubbard, Tim J ^c   Iseli, Christian ^l,t   Jean, Géraldine ^o   Kahles, André ^n,o   Lagarde, Julien ^d   Leng, Jing ^s   Lefebvre, Gregory ^k,l   Lewis, Suzanna ^u   Mortazavi, Ali ^v   Niermann, Peter ^o   Rätsch, Gunnar ^n,o   Reymond, Alexandre ^l   Ribeca, Paolo ^j   Richard, Hugues ^w   Rougemont, Jacques ^k,l   Rozowsky, Joel ^s   Sammeth, Michael ^d   Sboner, Andrea ^s   Schulz, Marcel H ^w   Searle, Steven M J ^c   Solorzano, Naryttza Diaz ^l,t   Solovyev, Victor ^x   Stanke, Mario ^y   Stevenson, Brian J ^l,t   Stockinger, Heinz ^l   Valsesia, Armand ^l,t   Weese, David ^z   White, Simon ^c   Wold, Barbara J ^aa   Wu, Jie ^i,ab   Wu, Thomas D ^ac   Zeller, Georg ^o   Zerbino, Daniel ^a   Zhang, Michael Q ⁱ   more..

^a EUROPEAN BIOINFORMATICS INSTITUTE   (United Kingdom)

^b UNIVERSITY OF BARCELONA   (Spain)

^c WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

^d CENTRE FOR GENOMIC REGULATION CRG   (Spain)

^e UNIVERSITAT POMPEU FABRA   (Spain)

^f EUROPEAN MOLECULAR BIOLOGY LABORATORY   (Germany)

^g UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^h STOCKHOLM UNIVERSITY   (Sweden)

ⁱ Simons Center for Quantitative Biology   (United States)

^j Centre Nacional d'Analisi Genomica   (Spain)

^k EPFL   (Switzerland)

^l UNIVERSITY OF LAUSANNE   (Switzerland)

^m UNIVERSITY OF GENEVA MEDICAL SCHOOL   (Switzerland)

ⁿ MEMORIAL SLOAN KETTERING CANCER CENTER   (United States)

^o FRIEDRICH MIESCHER LABORATORY OF THE MAX PLANCK SOCIETY   (Germany)

^p UNIVERSITY OF QUEENSLAND   (Australia)

^q Yale University   (United States)

^r UNIVERSITY OF CALIFORNIA   (United States)

^s YALE UNIVERSITY   (United States)

^t LUDWIG INSTITUTE FOR CANCER RESEARCH   (Switzerland)

^u LAWRENCE BERKELEY NATIONAL LABORATORY   (United States)

^v UNIVERSITY OF CALIFORNIA   (United States)

^w MAX PLANCK INSTITUTE FOR MOLECULAR GENETICS   (Germany)

^x UNIVERSITY OF LONDON   (United Kingdom)

^y Institute for Microbiology and Genetics   (Germany)

^z FREIE UNIVERSITÄT BERLIN   (Germany)

^aa CALIFORNIA INSTITUTE OF TECHNOLOGY   (United States)

^ab Stony Brook University   (United States)

^ac GENENTECH INC   (United States)

more..

Author keywords

[No Author keywords available]

Indexed keywords

RNA;

ARTICLE; EXON; GENE EXPRESSION; GENOME; HUMAN; NONHUMAN; PRIORITY JOURNAL; RNA SEQUENCE; RNA TRANSCRIPTION;

ALGORITHMS; ANIMALS; CAENORHABDITIS ELEGANS; COMPUTATIONAL BIOLOGY; DROSOPHILA MELANOGASTER; EXONS; GENE EXPRESSION PROFILING; GENOME; HUMANS; INTRONS; RNA SPLICE SITES; RNA SPLICING; RNA, MESSENGER; SEQUENCE ANALYSIS, RNA; SOFTWARE;

EUKARYOTA;

EID: 84888871954     PISSN: 15487091     EISSN: 15487105     Source Type: Journal    
DOI: 10.1038/nmeth.2714     Document Type: Article

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