-
1
-
-
78649773164
-
Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition
-
Adey A, Morrison HG, Asan, Xun X, Kitzman JO, Turner EH, Stackhouse B, MacKenzie AP, Caruccio NC, Zhang X, et al. 2010. Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition. Genome Biol 11: R119.
-
(2010)
Genome Biol
, vol.11
-
-
Adey, A.1
Morrison, H.G.2
Asan Xun, X.3
Kitzman, J.O.4
Turner, E.H.5
Stackhouse, B.6
Mackenzie, A.P.7
Caruccio, N.C.8
Zhang, X.9
-
2
-
-
78651484455
-
Genome-wide characterization of centromeric satellites from multiple mammalian genomes
-
Alkan C, Cardone MF, Catacchio CR, Antonacci F, O'Brien SJ, Ryder OA, Purgato S, Zoli M, Della Valle G, Eichler EE, et al. 2011a. Genome-wide characterization of centromeric satellites from multiple mammalian genomes. Genome Res 21: 137-145.
-
(2011)
Genome Res
, vol.21
, pp. 137-145
-
-
Alkan, C.1
Cardone, M.F.2
Catacchio, C.R.3
Antonacci, F.4
O'Brien, S.J.5
Ryder, O.A.6
Purgato, S.7
Zoli, M.8
Della Valle, G.9
Eichler, E.E.10
-
3
-
-
78650909427
-
Limitations of next-generation genome sequence assembly
-
Alkan C, Sajjadian S, Eichler EE. 2011b. Limitations of next-generation genome sequence assembly. Nat Methods 8: 61-65.
-
(2011)
Nat Methods
, vol.8
, pp. 61-65
-
-
Alkan, C.1
Sajjadian, S.2
Eichler, E.E.3
-
4
-
-
84867121279
-
Improving PacBio long read accuracy by short read alignment
-
Au KF, Underwood JG, Lee L,Wong WH. 2012. Improving PacBio long read accuracy by short read alignment. PLoS ONE 7: e46679.
-
(2012)
PLoS ONE
, vol.7
-
-
Au, K.F.1
Underwood, J.G.2
Lee, L.3
Wong, W.H.4
-
5
-
-
84890034912
-
Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions
-
Burton J, Adey A, Patwardhan RP, Qiu R, Kitzman J, Shendure J. 2013. Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions. Nat Biotechnol 31: 1119-1125.
-
(2013)
Nat Biotechnol
, vol.31
, pp. 1119-1125
-
-
Burton, J.1
Adey, A.2
Patwardhan, R.P.3
Qiu, R.4
Kitzman, J.5
Shendure, J.6
-
6
-
-
84866266717
-
Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): Application and theory
-
Chaisson MJ, Tesler G. 2012. Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): Application and theory. BMC Bioinformatics 13: 238.
-
(2012)
BMC Bioinformatics
, vol.13
, pp. 238
-
-
Chaisson, M.J.1
Tesler, G.2
-
7
-
-
84860858726
-
Inhibition of SRGAP2 function by its human-specific paralogs induces neoteny during spine maturation
-
CharrierC, Joshi K, Coutinho-Budd J, Kim J-E, Lambert N, de Marchena J, Jin WL, Vanderhaeghen P, Ghosh A, Sassa T, et al. 2012. Inhibition of SRGAP2 function by its human-specific paralogs induces neoteny during spine maturation. Cell 149: 923-935.
-
(2012)
Cell
, vol.149
, pp. 923-935
-
-
Charrier, C.1
Joshi, K.2
Coutinho-Budd, J.3
Kim, J.-E.4
Lambert, N.5
De Marchena, J.6
Jin, W.L.7
Vanderhaeghen, P.8
Ghosh, A.9
Sassa, T.10
-
8
-
-
84880798154
-
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
-
Chin CS, Alexander DH, Marks P, Klammer AA, Drake J, Heiner C, Clum A, Copeland A, Huddleston J, Eichler EE, et al. 2013. Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data. Nat Methods 10: 563-569.
-
(2013)
Nat Methods
, vol.10
, pp. 563-569
-
-
Chin, C.S.1
Alexander, D.H.2
Marks, P.3
Klammer, A.A.4
Drake, J.5
Heiner, C.6
Clum, A.7
Copeland, A.8
Huddleston, J.9
Eichler, E.E.10
-
9
-
-
66249148986
-
Lineage-specific biology revealed by a finished genome assembly of the mouse
-
Church DM, Goodstadt L, Hillier LW, Zody MC, Goldstein S, She X, Bult CJ, Agarwala R, Cherry JL, DiCuccio M, et al. 2009. Lineage-specific biology revealed by a finished genome assembly of the mouse. PLoS Biol 7: e1000112.
-
(2009)
PLoS Biol
, vol.7
-
-
Church, D.M.1
Goodstadt, L.2
Hillier, L.W.3
Zody, M.C.4
Goldstein, S.5
She, X.6
Bult, C.J.7
Agarwala, R.8
Cherry, J.L.9
Dicuccio, M.10
-
10
-
-
79960925372
-
Modernizing reference genome assemblies
-
Church DM, Schneider VA, Graves T, Auger K, Cunningham F, Bouk N, Chen HC, Agarwala R, McLaren WM, Ritchie GR, et al. 2011. Modernizing reference genome assemblies. PLoS Biol 9: e1001091.
-
(2011)
PLoS Biol
, vol.9
-
-
Church, D.M.1
Schneider, V.A.2
Graves, T.3
Auger, K.4
Cunningham, F.5
Bouk, N.6
Chen, H.C.7
Agarwala, R.8
McLaren, W.M.9
Ritchie, G.R.10
-
11
-
-
84860860685
-
Evolution of human-specific neural SRGAP2 genes by incomplete segmental duplication
-
Dennis MY, Nuttle X, Sudmant PH, Antonacci F, Graves TA, Nefedov M, Rosenfeld JA, Sajjadian S, Malig M, Kotkiewicz H, et al. 2012. Evolution of human-specific neural SRGAP2 genes by incomplete segmental duplication. Cell 149: 912-922.
-
(2012)
Cell
, vol.149
, pp. 912-922
-
-
Dennis, M.Y.1
Nuttle, X.2
Sudmant, P.H.3
Antonacci, F.4
Graves, T.A.5
Nefedov, M.6
Rosenfeld, J.A.7
Sajjadian, S.8
Malig, M.9
Kotkiewicz, H.10
-
12
-
-
84869814079
-
Mind the gap: Upgrading genomes with Pacific Biosciences RS long-read sequencing technology
-
English AC, Richards S, Han Y,Wang M, Vee V, Qu J, Qin X, MuznyDM, Reid JG,Worley KC, et al. 2012. Mind the gap: Upgrading genomes with Pacific Biosciences RS long-read sequencing technology. PLoS ONE 7: e47768.
-
(2012)
PLoS ONE
, vol.7
-
-
English, A.C.1
Richards, S.2
Han, Y.3
Wang, M.4
Vee, V.5
Qu, J.6
Qin, X.7
Muzny, D.M.8
Reid, J.G.9
Worley, K.C.10
-
13
-
-
84862777341
-
Strict evolutionary conservation followed rapid gene loss on human and rhesus y chromosomes
-
Hughes JF, Skaletsky H, Brown LG, Pyntikova T, Graves T, Fulton RS, Dugan S, Ding Y, Buhay CJ, Kremitzki C, et al. 2012. Strict evolutionary conservation followed rapid gene loss on human and rhesus Y chromosomes. Nature 483: 82-86.
-
(2012)
Nature
, vol.483
, pp. 82-86
-
-
Hughes, J.F.1
Skaletsky, H.2
Brown, L.G.3
Pyntikova, T.4
Graves, T.5
Fulton, R.S.6
Dugan, S.7
Ding, Y.8
Buhay, C.J.9
Kremitzki, C.10
-
14
-
-
84876480192
-
Precise breakpoint localization of large genomic deletions using PacBio and Illumina next-generation sequencers
-
Okoniewski MJ, Meienberg J, Patrignani A, Szabelska A, Matyas G, Schlapbach R. 2013. Precise breakpoint localization of large genomic deletions using PacBio and Illumina next-generation sequencers. Biotechniques 54: 98-100.
-
(2013)
Biotechniques
, vol.54
, pp. 98-100
-
-
Okoniewski, M.J.1
Meienberg, J.2
Patrignani, A.3
Szabelska, A.4
Matyas, G.5
Schlapbach, R.6
-
16
-
-
84857893016
-
GAGE: A critical evaluation of genome assemblies and assembly algorithms
-
Salzberg SL, Phillippy AM, Zimin A, Puiu D, Magoc T, Koren S, Treangen TJ, Schatz MC, Delcher AL, Roberts M, et al. 2012. GAGE: A critical evaluation of genome assemblies and assembly algorithms. Genome Res 22: 557-567.
-
(2012)
Genome Res
, vol.22
, pp. 557-567
-
-
Salzberg, S.L.1
Phillippy, A.M.2
Zimin, A.3
Puiu, D.4
Magoc, T.5
Koren, S.6
Treangen, T.J.7
Schatz, M.C.8
Delcher, A.L.9
Roberts, M.10
-
17
-
-
13944278863
-
A commoninversion under selection in Europeans
-
Stefansson H, Helgason A, Thorleifsson G, Steinthorsdottir V, Masson G, Barnard J, Baker A, Jonasdottir A, Ingason A, Gudnadottir VG, et al. 2005. A commoninversion under selection in Europeans. NatGenet 37: 129-137.
-
(2005)
Nat Genet
, vol.37
, pp. 129-137
-
-
Stefansson, H.1
Helgason, A.2
Thorleifsson, G.3
Steinthorsdottir, V.4
Masson, G.5
Barnard, J.6
Baker, A.7
Jonasdottir, A.8
Ingason, A.9
Gudnadottir, V.G.10
-
18
-
-
84864407091
-
Structural diversity and African origin of the 17q21.31 inversion polymorphism
-
Steinberg KM, Antonacci F, Sudmant PH, Kidd JM, Campbell CD, Vives L, Malig M, Scheinfeldt L, Beggs W, Ibrahim M, et al. 2012. Structural diversity and African origin of the 17q21.31 inversion polymorphism. Nat Genet 44: 872-880.
-
(2012)
Nat Genet
, vol.44
, pp. 872-880
-
-
Steinberg, K.M.1
Antonacci, F.2
Sudmant, P.H.3
Kidd, J.M.4
Campbell, C.D.5
Vives, L.6
Malig, M.7
Scheinfeldt, L.8
Beggs, W.9
Ibrahim, M.10
-
19
-
-
78049412267
-
Diversity of human copy number variation and multicopy genes
-
Sudmant PH, Kitzman JO, Antonacci F, Alkan C, Malig M, Tsalenko A, Sampas N, Bruhn L, Shendure J, Eichler EE. 2010. Diversity of human copy number variation and multicopy genes. Science 330: 641-646.
-
(2010)
Science
, vol.330
, pp. 641-646
-
-
Sudmant, P.H.1
Kitzman, J.O.2
Antonacci, F.3
Alkan, C.4
Malig, M.5
Tsalenko, A.6
Sampas, N.7
Bruhn, L.8
Shendure, J.9
Eichler, E.E.10
-
20
-
-
84883682103
-
Evolution and diversity of copy number variation in the great ape lineage
-
Sudmant PH, Huddleston J, Catacchio CR, Malig M, Hillier LW,Mohajeri K, Kondova I, Bontrop RE, Persengiev S, Antonacci F, et al. 2013. Evolution and diversity of copy number variation in the great ape lineage. Genome Res 23: 1373-1382.
-
(2013)
Genome Res
, vol.23
, pp. 1373-1382
-
-
Sudmant, P.H.1
Huddleston, J.2
Catacchio, C.R.3
Malig, M.4
Hillier, L.W.5
Mohajeri, K.6
Kondova, I.7
Bontrop, R.E.8
Persengiev, S.9
Antonacci, F.10
-
21
-
-
77956125365
-
A flexible and efficient template format for circular consensus sequencing and SNP detection
-
Travers KJ, Chin CS, Rank DR, Eid JS, Turner SW. 2010. A flexible and efficient template format for circular consensus sequencing and SNP detection. Nucleic Acids Res 38: e159.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Travers, K.J.1
Chin, C.S.2
Rank, D.R.3
Eid, J.S.4
Turner, S.W.5
-
22
-
-
50449104624
-
Evolutionary toggling of the MAPT 17q21.31 inversion region
-
Zody MC, Jiang Z, Fung HC, Antonacci F, Hillier LW,Cardone MF, Graves TA, Kidd JM, Cheng Z, Abouelleil A, et al. 2008. Evolutionary toggling of the MAPT 17q21.31 inversion region. Nat Genet 40: 1076-1083.
-
(2008)
Nat Genet
, vol.40
, pp. 1076-1083
-
-
Zody, M.C.1
Jiang, Z.2
Fung, H.C.3
Antonacci, F.4
Hillier, L.W.5
Cardone, M.F.6
Graves, T.A.7
Kidd, J.M.8
Cheng, Z.9
Abouelleil, A.10
|