메뉴 건너뛰기




Volumn 6, Issue 9, 2009, Pages 677-681

BreakDancer: An algorithm for high-resolution mapping of genomic structural variation

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ACUTE GRANULOCYTIC LEUKEMIA; ALGORITHM; ARTICLE; CHROMOSOME INVERSION; CONTROLLED STUDY; GENE DELETION; GENE INSERTION; GENE MAPPING; GENE STRUCTURE; GENE TRANSLOCATION; GENETIC VARIABILITY; HUMAN; HUMAN CELL; MATHEMATICAL ANALYSIS; MATHEMATICAL MODEL; PRIORITY JOURNAL; SENSITIVITY ANALYSIS; SIMULATION;

EID: 69549116107     PISSN: 15487091     EISSN: 15491676     Source Type: Journal    
DOI: 10.1038/nmeth.1363     Document Type: Article
Times cited : (1142)

References (31)
  • 1
    • 31144469134 scopus 로고    scopus 로고
    • Structural variation in the human genome
    • Feuk, L., Carson, A.R. & Scherer, S.W. Structural variation in the human genome. Nat. Rev. Genet. 7, 85-97 (2006).
    • (2006) Nat. Rev. Genet , vol.7 , pp. 85-97
    • Feuk, L.1    Carson, A.R.2    Scherer, S.W.3
  • 2
    • 38749129175 scopus 로고    scopus 로고
    • 22q11.2 distal deletion: A recurrent genomic disorder distinct from DiGeorge syndrome and velocardiofacial syndrome
    • Ben-Shachar, S. et al. 22q11.2 distal deletion: A recurrent genomic disorder distinct from DiGeorge syndrome and velocardiofacial syndrome. Am. J. Hum. Genet. 82, 214-221 (2008).
    • (2008) Am. J. Hum. Genet , vol.82 , pp. 214-221
    • Ben-Shachar, S.1
  • 3
    • 39749154724 scopus 로고    scopus 로고
    • A recurrent 15q13.3 microdeletion syndrome associated with mental retardation and seizures
    • Sharp, A.J. et al. A recurrent 15q13.3 microdeletion syndrome associated with mental retardation and seizures. Nat. Genet. 40 322-328 (2008).
    • (2008) Nat. Genet , vol.40 , pp. 322-328
    • Sharp, A.J.1
  • 4
    • 1542515338 scopus 로고    scopus 로고
    • A census of human cancer genes
    • Futreal, P.A. et al. A census of human cancer genes. Nat. Rev. Cancer 4, 177-183 (2004).
    • (2004) Nat. Rev. Cancer , vol.4 , pp. 177-183
    • Futreal, P.A.1
  • 5
    • 54549108740 scopus 로고    scopus 로고
    • Comprehensive genomic characterization defines human glioblastoma genes and core pathways
    • Cancer Genome Atlas Research Network
    • Cancer Genome Atlas Research Network. Comprehensive genomic characterization defines human glioblastoma genes and core pathways. Nature 455, 1061-1068 (2008).
    • (2008) Nature , vol.455 , pp. 1061-1068
  • 6
    • 33947581390 scopus 로고    scopus 로고
    • The impact of translocations and gene fusions on cancer causation
    • Mitelman, F., Johansson, B. & Mertens, F. The impact of translocations and gene fusions on cancer causation. Nat. Rev. Cancer 7, 233-245 (2007).
    • (2007) Nat. Rev. Cancer , vol.7 , pp. 233-245
    • Mitelman, F.1    Johansson, B.2    Mertens, F.3
  • 7
    • 33645243394 scopus 로고    scopus 로고
    • High-resolution mapping of DNA copy alterations in human chromosome 22 using high-density tiling oligonucleotide arrays
    • Urban, A.E. et al. High-resolution mapping of DNA copy alterations in human chromosome 22 using high-density tiling oligonucleotide arrays. Proc. Natl. Acad. Sci. USA 103, 4534-4539 (2006).
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 4534-4539
    • Urban, A.E.1
  • 8
    • 33751329250 scopus 로고    scopus 로고
    • Global variation in copy number in the human genome
    • Redon, R. et al. Global variation in copy number in the human genome. Nature 444, 444-454 (2006).
    • (2006) Nature , vol.444 , pp. 444-454
    • Redon, R.1
  • 9
    • 10744231402 scopus 로고    scopus 로고
    • Whole-genome shotgun assembly and comparison of human genome assemblies
    • Istrail, S. et al. Whole-genome shotgun assembly and comparison of human genome assemblies. Proc. Natl. Acad. Sci. USA 101, 1916-1921 (2004).
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 1916-1921
    • Istrail, S.1
  • 10
    • 33751340401 scopus 로고    scopus 로고
    • Genome assembly comparison identifies structural variants in the human genome
    • Khaja, R. et al. Genome assembly comparison identifies structural variants in the human genome. Nat. Genet. 38, 1413-1418 (2006).
    • (2006) Nat. Genet , vol.38 , pp. 1413-1418
    • Khaja, R.1
  • 11
    • 35648976118 scopus 로고    scopus 로고
    • The diploid genome sequence of an individual human
    • Levy, S. et al. The diploid genome sequence of an individual human. PLoS Biol. 5, e254 (2007).
    • (2007) PLoS Biol , vol.5
    • Levy, S.1
  • 12
    • 42249087308 scopus 로고    scopus 로고
    • The complete genome of an individual by massively parallel DNA sequencing
    • Wheeler, D.A. et al. The complete genome of an individual by massively parallel DNA sequencing. Nature 452, 872-876 (2008).
    • (2008) Nature , vol.452 , pp. 872-876
    • Wheeler, D.A.1
  • 13
    • 39649117755 scopus 로고    scopus 로고
    • The impact of next-generation sequencing technology on genetics
    • Mardis, E.R. The impact of next-generation sequencing technology on genetics. Trends Genet. 24, 133-141 (2008).
    • (2008) Trends Genet , vol.24 , pp. 133-141
    • Mardis, E.R.1
  • 14
    • 55549089660 scopus 로고    scopus 로고
    • Accurate whole human genome sequencing using reversible terminator chemistry
    • Bentley, D.R. et al. Accurate whole human genome sequencing using reversible terminator chemistry. Nature 456, 53-59 (2008).
    • (2008) Nature , vol.456 , pp. 53-59
    • Bentley, D.R.1
  • 15
    • 55549097849 scopus 로고    scopus 로고
    • The diploid genome sequence of an Asian individual
    • Wang, J. et al. The diploid genome sequence of an Asian individual. Nature 456, 60-65 (2008).
    • (2008) Nature , vol.456 , pp. 60-65
    • Wang, J.1
  • 16
    • 0037934515 scopus 로고    scopus 로고
    • End-sequence profiling: Sequence-based analysis of aberrant genomes
    • Volik, S. et al. End-sequence profiling: Sequence-based analysis of aberrant genomes. Proc. Natl. Acad. Sci. USA 100, 7696-7701 (2003).
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 7696-7701
    • Volik, S.1
  • 18
    • 38549161042 scopus 로고    scopus 로고
    • DNA sequencing. A plan to capture human diversity in 1000 genomes
    • Kaiser, J. DNA sequencing. A plan to capture human diversity in 1000 genomes. Science 319, 395 (2008).
    • (2008) Science , vol.319 , pp. 395
    • Kaiser, J.1
  • 19
    • 69549108792 scopus 로고    scopus 로고
    • Recurring mutations found by sequencing an acute myeloid leukemia genome
    • in the press
    • Mardis, E.R. et al. Recurring mutations found by sequencing an acute myeloid leukemia genome. N. Engl. J. Med. (in the press).
    • N. Engl. J. Med
    • Mardis, E.R.1
  • 20
    • 55549097836 scopus 로고    scopus 로고
    • Mapping short DNA sequencing reads and calling variants using mapping quality scores
    • Li, H., Ruan, J. & Durbin, R. Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res. 18 1851-1858 (2008).
    • (2008) Genome Res , vol.18 , pp. 1851-1858
    • Li, H.1    Ruan, J.2    Durbin, R.3
  • 21
    • 43049143055 scopus 로고    scopus 로고
    • Mapping and sequencing of structural variation from eight human genomes
    • Kidd, J.M. et al. Mapping and sequencing of structural variation from eight human genomes. Nature 453, 56-64 (2008).
    • (2008) Nature , vol.453 , pp. 56-64
    • Kidd, J.M.1
  • 22
    • 35348988679 scopus 로고    scopus 로고
    • Paired-end mapping reveals extensive structural variation in the human genome
    • Korbel, J.O. et al. Paired-end mapping reveals extensive structural variation in the human genome. Science 318, 420-426 (2007).
    • (2007) Science , vol.318 , pp. 420-426
    • Korbel, J.O.1
  • 23
    • 22844451617 scopus 로고    scopus 로고
    • Fine-scale structural variation of the human genome
    • Tuzun, E. et al. Fine-scale structural variation of the human genome. Nat. Genet. 37, 727-732 (2005).
    • (2005) Nat. Genet , vol.37 , pp. 727-732
    • Tuzun, E.1
  • 24
    • 67650064593 scopus 로고    scopus 로고
    • Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes
    • Hormozdiari, F., Alkan, C., Eichler, E.E. & Sahinalp, S.C. Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes. Genome Res. 19, 1270-1278 (2009).
    • (2009) Genome Res , vol.19 , pp. 1270-1278
    • Hormozdiari, F.1    Alkan, C.2    Eichler, E.E.3    Sahinalp, S.C.4
  • 25
    • 67649580757 scopus 로고    scopus 로고
    • MoDIL: Detecting small indels from clone-end sequencing with mixtures of distributions
    • Lee, S., Hormozdiari, F., Alkan, C. & Brudno, M. MoDIL: Detecting small indels from clone-end sequencing with mixtures of distributions. Nat. Methods 6, 473-474 (2009).
    • (2009) Nat. Methods , vol.6 , pp. 473-474
    • Lee, S.1    Hormozdiari, F.2    Alkan, C.3    Brudno, M.4
  • 26
    • 69549088692 scopus 로고    scopus 로고
    • Stuart, A., Ord, K. & Arnold, S. Tests of fit. in Kendall's Advanced Theory of Statistics 2A 25.37-25.43 (Arnold, London, 1999).
    • Stuart, A., Ord, K. & Arnold, S. Tests of fit. in Kendall's Advanced Theory of Statistics Vol. 2A 25.37-25.43 (Arnold, London, 1999).
  • 27
    • 69549083347 scopus 로고    scopus 로고
    • Acquired subcytogenetic deletions and amplifications in adult acute myeloid leukemia genomes
    • in the press
    • Walter, M.J. et al. Acquired subcytogenetic deletions and amplifications in adult acute myeloid leukemia genomes. Proc. Natl. Acad. Sci. USA (in the press).
    • Proc. Natl. Acad. Sci. USA
    • Walter, M.J.1
  • 28
    • 52949141845 scopus 로고    scopus 로고
    • Integrated detection and population-genetic analysis of SNPs and copy number variation
    • McCarroll, S.A. et al. Integrated detection and population-genetic analysis of SNPs and copy number variation. Nat. Genet. 40, 1166-1174 (2008).
    • (2008) Nat. Genet , vol.40 , pp. 1166-1174
    • McCarroll, S.A.1
  • 29
    • 58149218240 scopus 로고    scopus 로고
    • High-resolution mapping of copy-number alterations with massively parallel sequencing
    • Chiang, D.Y. et al. High-resolution mapping of copy-number alterations with massively parallel sequencing. Nat. Methods 6 99-103 (2009).
    • (2009) Nat. Methods , vol.6 , pp. 99-103
    • Chiang, D.Y.1
  • 30
    • 0002294353 scopus 로고
    • Combining independent tests of significance
    • Fisher, R.A. Combining independent tests of significance. Am. Stat. 2, 30 (1948).
    • (1948) Am. Stat , vol.2 , pp. 30
    • Fisher, R.A.1
  • 31
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
    • Zerbino, D.R. & Birney, E. Velvet: Algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18, 821-829 (2008).
    • (2008) Genome Res , vol.18 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.