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Volumn 23, Issue 10, 2013, Pages 1740-1748

Coelacanth genomes reveal signatures for evolutionary transition from water to land

(28)  Nikaido, Masato a   Noguchi, Hideki a,b   Nishihara, Hidenori a   Toyoda, Atsushi b   Suzuki, Yutaka c   Kajitani, Rei a   Suzuki, Hikoyu a   Okuno, Miki a   Aibara, Mitsuto a   Ngatunga, Benjamin P d   Mzighani, Semvua I d   Kalombo, Hassan W J e   Masengi, Kawilarang W A f   Tuda, Josef f   Nogami, Sadao g   Maeda, Ryuichiro h   Iwata, Masamitsu i   Abe, Yoshitaka i   Fujimura, Koji j   Okabe, Masataka j   more..


Author keywords

[No Author keywords available]

Indexed keywords

OSTEOGENIC PROTEIN 1; TRANSCRIPTION FACTOR GLI3; WATER;

EID: 84885040878     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.158105.113     Document Type: Article
Times cited : (92)

References (51)
  • 2
    • 35748942935 scopus 로고    scopus 로고
    • Control of kidney, eye and limb expression of Bmp7 by an enhancer element highly conserved between species
    • Adams D, Karolak M, Robertson E, Oxburgh L. 2007. Control of kidney, eye and limb expression of Bmp7 by an enhancer element highly conserved between species. Dev Biol 311: 679-690.
    • (2007) Dev Biol , vol.311 , pp. 679-690
    • Adams, D.1    Karolak, M.2    Robertson, E.3    Oxburgh, L.4
  • 6
    • 0028025398 scopus 로고
    • The chromosomes of the living coelacanth and their remarkable similarity to those of one of the most ancient frogs
    • Bogart JP, Balon EK, Bruton MN. 1994. The chromosomes of the living coelacanth and their remarkable similarity to those of one of the most ancient frogs. J Hered 85: 322-325.
    • (1994) J Hered , vol.85 , pp. 322-325
    • Bogart, J.P.1    Balon, E.K.2    Bruton, M.N.3
  • 7
    • 0036745117 scopus 로고    scopus 로고
    • Fins to limbs: What the fossils say
    • Coates MI, Jeffery JE, Rut M. 2002. Fins to limbs: What the fossils say. Evol Dev 4: 390-401.
    • (2002) Evol Dev , vol.4 , pp. 390-401
    • Coates, M.I.1    Jeffery, J.E.2    Rut, M.3
  • 8
    • 0036629835 scopus 로고    scopus 로고
    • First capture of a coelacanth, Latimeria chalumnae Smith, 1939 (Pisces: Latimeriidae), off Kenya
    • De Vos L, Oyugi D. 2002. First capture of a coelacanth, Latimeria chalumnae Smith, 1939 (Pisces: Latimeriidae), off Kenya. S Afr J Sci 98: 345-347.
    • (2002) S Afr J Sci , vol.98 , pp. 345-347
    • De Vos, L.1    Oyugi, D.2
  • 10
    • 0024193601 scopus 로고
    • Golden jubilee for the coelacanth Latimeria chalumnae
    • Forey PL. 1988. Golden jubilee for the coelacanth Latimeria chalumnae. Nature 336: 727-732.
    • (1988) Nature , vol.336 , pp. 727-732
    • Forey, P.L.1
  • 11
    • 79959301245 scopus 로고    scopus 로고
    • The population biology of the living coelacanth studied over 21 years
    • Fricke H, Hissmann K, Froese R, Schauer J, Plante R, Fricke S. 2011. The population biology of the living coelacanth studied over 21 years. Mar Biol 158: 1511-1522.
    • (2011) Mar Biol , vol.158 , pp. 1511-1522
    • Fricke, H.1    Hissmann, K.2    Froese, R.3    Schauer, J.4    Plante, R.5    Fricke, S.6
  • 12
    • 34447641134 scopus 로고    scopus 로고
    • First discovery of a primitive coelacanth fin fills amajor gap in the evolution of lobed fins and limbs
    • Friedman M, Coates MI, Anderson P. 2007. First discovery of a primitive coelacanth fin fills amajor gap in the evolution of lobed fins and limbs. Evol Dev 9: 329-337.
    • (2007) Evol Dev , vol.9 , pp. 329-337
    • Friedman, M.1    Coates, M.I.2    Anderson, P.3
  • 13
    • 0019300580 scopus 로고
    • Elastoidin actinotrichia in Coelacanth fins: A comparison with teleosts
    • Geraudie J, Meunier FJ. 1980. Elastoidin actinotrichia in Coelacanth fins: A comparison with teleosts. Tissue Cell 12: 637-645.
    • (1980) Tissue Cell , vol.12 , pp. 637-645
    • Geraudie, J.1    Meunier, F.J.2
  • 16
    • 0000935546 scopus 로고    scopus 로고
    • First authentic capture of a coelacanth, Latimeria chalumnae (Pisces: Latimeriidae), off Madagascar
    • Heemstra PC, Freeman AL, Wong HY, Hensley DA, Rabesandratana HD. 1996.First authentic capture of a coelacanth, Latimeria chalumnae (Pisces: Latimeriidae), off Madagascar. S Afr J Sci 92: 150-151.
    • (1996) S Afr J Sci , vol.92 , pp. 150-151
    • Heemstra, P.C.1    Freeman, A.L.2    Wong, H.Y.3    Hensley, D.A.4    Rabesandratana, H.D.5
  • 20
    • 0001055710 scopus 로고
    • Cellular DNA content and the evolution of teleostean fishes
    • Hinegardner R, Rosen DE. 1972. Cellular DNA content and the evolution of teleostean fishes. Am Nat 106: 621-644.
    • (1972) Am Nat , vol.106 , pp. 621-644
    • Hinegardner, R.1    Rosen, D.E.2
  • 21
    • 0031828694 scopus 로고    scopus 로고
    • Population monitoring of the coelacanth (Latimeria chalumnae)
    • Hissmann K, Fricke H, Schauer J. 1998. Population monitoring of the coelacanth (Latimeria chalumnae). Conserv Biol 12: 759-765.
    • (1998) Conserv Biol , vol.12 , pp. 759-765
    • Hissmann, K.1    Fricke, H.2    Schauer, J.3
  • 22
    • 17044393500 scopus 로고    scopus 로고
    • The mitochondrial genome of Indonesian coelacanth Latimeria menadoensis (Sarcopterygii: Coelacanthiformes) and divergence time estimation between the two coelacanths
    • Inoue JG, Miya M, Venkatesh B, Nishida M. 2005. The mitochondrial genome of Indonesian coelacanth Latimeria menadoensis (Sarcopterygii: Coelacanthiformes) and divergence time estimation between the two coelacanths. Gene 349: 227-235.
    • (2005) Gene , vol.349 , pp. 227-235
    • Inoue, J.G.1    Miya, M.2    Venkatesh, B.3    Nishida, M.4
  • 23
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • International Human Genome Sequencing Consortium
    • International Human Genome Sequencing Consortium. 2001. Initial sequencing and analysis of the human genome. Nature 409: 806-921.
    • (2001) Nature , vol.409 , pp. 806-921
  • 24
    • 2542567200 scopus 로고    scopus 로고
    • Harbinger transposons and an ancient HARBI1 gene derived from a transposase
    • Kapitonov VV, Jurka J. 2004. Harbinger transposons and an ancient HARBI1 gene derived from a transposase. DNA Cell Biol 23: 311-324.
    • (2004) DNA Cell Biol , vol.23 , pp. 311-324
    • Kapitonov, V.V.1    Jurka, J.2
  • 27
    • 0035193659 scopus 로고    scopus 로고
    • Divergence pattern of animal gene families and relationship with the Cambrian explosion
    • Miyata T, Suga H. 2001. Divergence pattern of animal gene families and relationship with the Cambrian explosion. Bioessays 23: 1018-1027.
    • (2001) Bioessays , vol.23 , pp. 1018-1027
    • Miyata, T.1    Suga, H.2
  • 28
    • 56549111367 scopus 로고    scopus 로고
    • The evolution of animal chemosensory receptor gene repertoires: Roles of chance and necessity
    • Nei M, Niimura Y, NozawaM. 2008. The evolution of animal chemosensory receptor gene repertoires: roles of chance and necessity. Nat Rev Genet 9: 951-963.
    • (2008) Nat Rev Genet , vol.9 , pp. 951-963
    • Nei, M.1    Niimura, Y.2    Nozawa, M.3
  • 29
    • 17844373261 scopus 로고    scopus 로고
    • Evolutionary dynamics of olfactory receptor genes in fishes and tetrapods
    • Niimura Y, Nei M. 2005. Evolutionary dynamics of olfactory receptor genes in fishes and tetrapods. Proc Natl Acad Sci 102: 6039-6044.
    • (2005) Proc Natl Acad Sci , vol.102 , pp. 6039-6044
    • Niimura, Y.1    Nei, M.2
  • 32
    • 67349113896 scopus 로고    scopus 로고
    • The evolution of two partner LINE/ SINE families and a full-length chromodomain-containing Ty3/Gypsy LTR element in the first reptilian genome of Anolis carolinensis
    • Piskurek O, Nishihara H, Okada N. 2009. The evolution of two partner LINE/ SINE families and a full-length chromodomain-containing Ty3/Gypsy LTR element in the first reptilian genome of Anolis carolinensis. Gene 441: 111-118.
    • (2009) Gene , vol.441 , pp. 111-118
    • Piskurek, O.1    Nishihara, H.2    Okada, N.3
  • 33
    • 79951876391 scopus 로고    scopus 로고
    • Evidence from mitochondrial genomics supports the lowerMesozoic of South Asia as the time and place of basal divergence of cypriniform fishes (Actinopterygii: Ostariophysi)
    • Saitoh K, Sado T, Doosey MH, Bart HLJ, Inoue JG, Nishida M, Mayden RL, Nishida M, Miya M. 2011. Evidence from mitochondrial genomics supports the lowerMesozoic of South Asia as the time and place of basal divergence of cypriniform fishes (Actinopterygii: Ostariophysi). Zool J Linn Soc 161: 633-662.
    • (2011) Zool J Linn Soc , vol.161 , pp. 633-662
    • Saitoh, K.1    Sado, T.2    Doosey, M.H.3    Bart, H.L.J.4    Inoue, J.G.5    Nishida, M.6    Mayden, R.L.7    Nishida, M.8    Miya, M.9
  • 34
    • 34948897642 scopus 로고    scopus 로고
    • A novel olfactory receptor gene family in teleost fish
    • Saraiva LR, Korsching SI. 2007. A novel olfactory receptor gene family in teleost fish. Genome Res 17: 1448-1457.
    • (2007) Genome Res , vol.17 , pp. 1448-1457
    • Saraiva, L.R.1    Korsching, S.I.2
  • 35
    • 33846291388 scopus 로고    scopus 로고
    • Mitogenomic analysis for coelacanths (Latimeria chalumnae) caught in Tanzania
    • Sasaki T, Sato T, Miura S, Bwathondi PO, Ngatunga BP, Okada N. 2007. Mitogenomic analysis for coelacanths (Latimeria chalumnae) caught in Tanzania. Gene 389: 73-79.
    • (2007) Gene , vol.389 , pp. 73-79
    • Sasaki, T.1    Sato, T.2    Miura, S.3    Bwathondi, P.O.4    Ngatunga, B.P.5    Okada, N.6
  • 38
    • 79961238023 scopus 로고    scopus 로고
    • Appendage expression driven by the Hoxd Global Control Region is an ancient gnathostome feature
    • Schneider I, Aneas I, Gehrke AR, Dahn RD, Nobrega MA, Shubin NH. 2011. Appendage expression driven by the Hoxd Global Control Region is an ancient gnathostome feature. Proc Natl Acad Sci 108: 12782-12786.
    • (2011) Proc Natl Acad Sci , vol.108 , pp. 12782-12786
    • Schneider, I.1    Aneas, I.2    Gehrke, A.R.3    Dahn, R.D.4    Nobrega, M.A.5    Shubin, N.H.6
  • 39
    • 0033964296 scopus 로고    scopus 로고
    • SINE insertions: Powerful tools for molecular systematics
    • Shedlock AM, Okada N. 2000. SINE insertions: Powerful tools for molecular systematics. Bioessays 22: 148-160.
    • (2000) Bioessays , vol.22 , pp. 148-160
    • Shedlock, A.M.1    Okada, N.2
  • 40
    • 0000039332 scopus 로고
    • A living fish of Mesozonic type
    • Smith JLB. 1939. A living fish of Mesozonic type. Nature 143: 455-456.
    • (1939) Nature , vol.143 , pp. 455-456
    • Smith, J.L.B.1
  • 41
    • 13044310962 scopus 로고
    • The second Coelacanth
    • Smith JLB. 1953. The second Coelacanth. Nature 171: 99-101.
    • (1953) Nature , vol.171 , pp. 99-101
    • Smith, J.L.B.1
  • 42
    • 2642644320 scopus 로고
    • The atomic bomb and the coelacanth
    • 10 Dec
    • Smith JLB. 1963. The atomic bomb and the coelacanth. The Daily Dispatch, 10 Dec.
    • (1963) The Daily Dispatch
    • Smith, J.L.B.1
  • 43
    • 84863135322 scopus 로고    scopus 로고
    • A living fossil in the genome of a living fossil: Harbinger transposons in the coelacanth genome
    • Smith JJ, Sumiyama K, Amemiya CT. 2012. A living fossil in the genome of a living fossil: Harbinger transposons in the coelacanth genome. Mol Biol Evol 29: 985-993.
    • (2012) Mol Biol Evol , vol.29 , pp. 985-993
    • Smith, J.J.1    Sumiyama, K.2    Amemiya, C.T.3
  • 45
    • 3242743113 scopus 로고    scopus 로고
    • The phylogenetic relationship of tetrapod, coelacanth, and lungfish revealed by the sequences of forty-four nuclear genes
    • Takezaki N, Figueroa F, Zaleska-Rutczynska Z, Takahata N, Klein J. 2004. The phylogenetic relationship of tetrapod, coelacanth, and lungfish revealed by the sequences of forty-four nuclear genes. Mol Biol Evol 21: 1512-1524.
    • (2004) Mol Biol Evol , vol.21 , pp. 1512-1524
    • Takezaki, N.1    Figueroa, F.2    Zaleska-Rutczynska, Z.3    Takahata, N.4    Klein, J.5
  • 48
    • 0029891261 scopus 로고    scopus 로고
    • Evolutionary relationships of the coelacanth, lungfishes, and tetrapods based on the 28S ribosomal RNA gene
    • Zardoya R, Meyer A. 1996. Evolutionary relationships of the coelacanth, lungfishes, and tetrapods based on the 28S ribosomal RNA gene. Proc Natl Acad Sci 93: 5449-5454.
    • (1996) Proc Natl Acad Sci , vol.93 , pp. 5449-5454
    • Zardoya, R.1    Meyer, A.2
  • 49
    • 70449805406 scopus 로고    scopus 로고
    • Vertebrate limb bud development: Moving towards integrative analysis of organogenesis
    • Zeller R, López-Ríos J, Zuniga A. 2009. Vertebrate limb bud development: Moving towards integrative analysis of organogenesis. Nat Rev Genet 10: 845-858.
    • (2009) Nat Rev Genet , vol.10 , pp. 845-858
    • Zeller, R.1    López-Ríos, J.2    Zuniga, A.3
  • 51
    • 84872121376 scopus 로고    scopus 로고
    • Conserved cis-regulatory regions in a large genomic landscape control SHH and BMP-regulated Gremlin1 expression in mouse limb buds
    • Zuniga A, Laurent F, Lopez-Rios J, Klasen C, Matt N, Zeller R. 2012. Conserved cis-regulatory regions in a large genomic landscape control SHH and BMP-regulated Gremlin1 expression in mouse limb buds. BMC Dev Biol 12: 23. Technology
    • (2012) BMC Dev Biol , vol.12 , pp. 23
    • Zuniga, A.1    Laurent, F.2    Lopez-Rios, J.3    Klasen, C.4    Matt, N.5    Zeller, R.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.