-
1
-
-
84975742565
-
A map of human genome variation from population-scale sequencing
-
1000 Genomes Project Consortium
-
1000 Genomes Project Consortium. A map of human genome variation from population-scale sequencing. Nature 467, 1061-1073 (2010)
-
(2010)
Nature
, vol.467
, pp. 1061-1073
-
-
-
2
-
-
79957932376
-
Dindel: Accurate indel calls from short-read data
-
Albers, C.A. et al. Dindel: accurate indel calls from short-read data. Genome Res. 21, 961-973 (2011)
-
(2011)
Genome Res.
, vol.21
, pp. 961-973
-
-
Albers, C.A.1
-
3
-
-
79955483667
-
A framework for variation discovery and genotyping using next-generation DNA sequencing data
-
DePristo, M.A. et al. A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat. Genet. 43, 491-498 (2011)
-
(2011)
Nat. Genet.
, vol.43
, pp. 491-498
-
-
Depristo, M.A.1
-
4
-
-
84861861291
-
LobSTR: A short tandem repeat profiler for personal genomes
-
Gymrek, M., Golan, D., Rosset, S. & Erlich, Y. lobSTR: a short tandem repeat profiler for personal genomes. Genome Res. 22, 1154-1162 (2012)
-
(2012)
Genome Res.
, vol.22
, pp. 1154-1162
-
-
Gymrek, M.1
Golan, D.2
Rosset, S.3
Erlich, Y.4
-
5
-
-
84856246802
-
De novo assembly and genotyping of variants using colored de Bruijn graphs
-
Iqbal, Z., Caccamo, M., Turner, I., Flicek, P. & McVean, G. De novo assembly and genotyping of variants using colored de Bruijn graphs. Nat. Genet. 44, 226-232 (2012)
-
(2012)
Nat. Genet.
, vol.44
, pp. 226-232
-
-
Iqbal, Z.1
Caccamo, M.2
Turner, I.3
Flicek, P.4
McVean, G.5
-
6
-
-
84868138663
-
A likelihood-based framework for variant calling and de novo mutation detection in families
-
Li, B. et al. A likelihood-based framework for variant calling and de novo mutation detection in families. PLoS Genet. 8, e1002944 (2012)
-
(2012)
PLoS Genet.
, vol.8
, pp. e1002944
-
-
Li, B.1
-
7
-
-
77956295988
-
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
-
McKenna, A. et al. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 20, 1297-1303 (2010)
-
(2010)
Genome Res.
, vol.20
, pp. 1297-1303
-
-
McKenna, A.1
-
8
-
-
84878276682
-
A support vector machine for identification of single-nucleotide polymorphisms from next-generation sequencing data
-
O'Fallon, B.D., Wooderchak-Donahue, W. & Crockett, D.K. A support vector machine for identification of single-nucleotide polymorphisms from next-generation sequencing data. Bioinformatics 29, 1361-1366 (2013)
-
(2013)
Bioinformatics
, vol.29
, pp. 1361-1366
-
-
Ofallon, B.D.1
Wooderchak-Donahue, W.2
Crockett, D.K.3
-
9
-
-
84857838310
-
Efficient de novo assembly of large genomes using compressed data structures
-
Simpson, J.T. & Durbin, R. Efficient de novo assembly of large genomes using compressed data structures. Genome Res. 22, 549-556 (2012)
-
(2012)
Genome Res.
, vol.22
, pp. 549-556
-
-
Simpson, J.T.1
Durbin, R.2
-
10
-
-
84877100867
-
An integrative variant analysis pipeline for accurate genotype/haplotype inference in population NGS data
-
Wang, Y., Lu, J., Yu, J., Gibbs, R.A. & Yu, F. An integrative variant analysis pipeline for accurate genotype/haplotype inference in population NGS data. Genome Res. 23, 833-842 (2013)
-
(2013)
Genome Res.
, vol.23
, pp. 833-842
-
-
Wang, Y.1
Lu, J.2
Yu, J.3
Gibbs, R.A.4
Yu, F.5
-
11
-
-
77956331627
-
Integrating common and rare genetic variation in diverse human populations
-
International HapMap 3 Consortium
-
International HapMap 3 Consortium. Integrating common and rare genetic variation in diverse human populations. Nature 467, 52-58 (2010)
-
(2010)
Nature
, vol.467
, pp. 52-58
-
-
-
12
-
-
0025905795
-
Identification of a gene (FMR-1) containing a CGG repeat coincident with a breakpoint cluster region exhibiting length variation in fragile X syndrome
-
Verkerk, A.J. et al. Identification of a gene (FMR-1) containing a CGG repeat coincident with a breakpoint cluster region exhibiting length variation in fragile X syndrome. Cell 65, 905-914 (1991)
-
(1991)
Cell
, vol.65
, pp. 905-914
-
-
Verkerk, A.J.1
-
13
-
-
0025868571
-
DNA duplication associated with Charcot-Marie-Tooth disease type 1A
-
Lupski, J.R. et al. DNA duplication associated with Charcot-Marie-Tooth disease type 1A. Cell 66, 219-232 (1991)
-
(1991)
Cell
, vol.66
, pp. 219-232
-
-
Lupski, J.R.1
-
14
-
-
63949083912
-
Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G+C)-biased genomes
-
Kozarewa, I. et al. Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G+C)-biased genomes. Nat. Methods 6, 291-295 (2009)
-
(2009)
Nat. Methods
, vol.6
, pp. 291-295
-
-
Kozarewa, I.1
-
15
-
-
33745617710
-
A fast and symmetric DUST implementation to mask low-complexity DNA sequences
-
Morgulis, A., Gertz, E.M., Schaffer, A.A. & Agarwala, R. A fast and symmetric DUST implementation to mask low-complexity DNA sequences. J. Comput. Biol. 13, 1028-1040 (2006)
-
(2006)
J. Comput. Biol.
, vol.13
, pp. 1028-1040
-
-
Morgulis, A.1
Gertz, E.M.2
Schaffer, A.A.3
Agarwala, R.4
-
16
-
-
7244247384
-
Shotgun sequence assembly and recent segmental duplications within the human genome
-
She, X. et al. Shotgun sequence assembly and recent segmental duplications within the human genome. Nature 431, 927-930 (2004)
-
(2004)
Nature
, vol.431
, pp. 927-930
-
-
She, X.1
-
17
-
-
84878234942
-
Characterizing and measuring bias in sequence data
-
Ross, M.G. et al. Characterizing and measuring bias in sequence data. Genome Biol. 14, R51 (2013)
-
(2013)
Genome Biol.
, vol.14
, pp. R51
-
-
Ross, M.G.1
-
18
-
-
79954553212
-
Improving SNP discovery by base alignment quality
-
Li, H. Improving SNP discovery by base alignment quality. Bioinformatics 27, 1157-1158 (2011)
-
(2011)
Bioinformatics
, vol.27
, pp. 1157-1158
-
-
Li, H.1
-
19
-
-
25844487226
-
Diseases of unstable repeat expansion: Mechanisms and common principles
-
Gatchel, J.R. & Zoghbi, H.Y. Diseases of unstable repeat expansion: mechanisms and common principles. Nat. Rev. Genet. 6, 743-755 (2005)
-
(2005)
Nat. Rev. Genet.
, vol.6
, pp. 743-755
-
-
Gatchel, J.R.1
Zoghbi, H.Y.2
-
20
-
-
79954615189
-
Nebulin, a major player in muscle health and disease
-
Labeit, S., Ottenheijm, C.A. & Granzier, H. Nebulin, a major player in muscle health and disease. FASEB J. 25, 822-829 (2011)
-
(2011)
FASEB J.
, vol.25
, pp. 822-829
-
-
Labeit, S.1
Ottenheijm, C.A.2
Granzier, H.3
-
21
-
-
0002344794
-
Bootstrap methods: Another look at the jackknife
-
Efron, B. Bootstrap methods: another look at the jackknife. Ann. Stat. 7, 1-26 (1979)
-
(1979)
Ann. Stat.
, vol.7
, pp. 1-26
-
-
Efron, B.1
-
22
-
-
84880798154
-
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
-
Chin, C.S. et al. Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data. Nat. Methods 10, 563-569 (2013)
-
(2013)
Nat. Methods
, vol.10
, pp. 563-569
-
-
Chin, C.S.1
-
23
-
-
77954523593
-
Iterative correction of reference nucleotides (iCORN) using second generation sequencing technology
-
Otto, T.D., Sanders, M., Berriman, M. & Newbold, C. Iterative Correction of Reference Nucleotides (iCORN) using second generation sequencing technology. Bioinformatics 26, 1704-1707 (2010)
-
(2010)
Bioinformatics
, vol.26
, pp. 1704-1707
-
-
Otto, T.D.1
Sanders, M.2
Berriman, M.3
Newbold, C.4
-
24
-
-
70349866672
-
Genome project standards in a new era of sequencing
-
Chain, P.S. et al. Genome project standards in a new era of sequencing. Science 326, 236-237 (2009)
-
(2009)
Science
, vol.326
, pp. 236-237
-
-
Chain, P.S.1
-
25
-
-
7244245762
-
Finishing the euchromatic sequence of the human genome
-
International Human Genome Sequencing Consortium
-
International Human Genome Sequencing Consortium. Finishing the euchromatic sequence of the human genome. Nature 431, 931-945 (2004)
-
(2004)
Nature
, vol.431
, pp. 931-945
-
-
-
26
-
-
0034708758
-
A whole-genome assembly of Drosophila
-
Myers, E.W. et al. A whole-genome assembly of Drosophila. Science 287, 2196-2204 (2000)
-
(2000)
Science
, vol.287
, pp. 2196-2204
-
-
Myers, E.W.1
-
27
-
-
0035895505
-
The sequence of the human genome
-
Venter, J.C. et al. The sequence of the human genome. Science 291, 1304-1351 (2001)
-
(2001)
Science
, vol.291
, pp. 1304-1351
-
-
Venter, J.C.1
-
28
-
-
0035859921
-
An eulerian path approach to DNA fragment assembly
-
Pevzner, P.A., Tang, H. & Waterman, M.S. An Eulerian path approach to DNA fragment assembly. Proc. Natl. Acad. Sci. USA 98, 9748-9753 (2001)
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 9748-9753
-
-
Pevzner, P.A.1
Tang, H.2
Waterman, M.S.3
-
29
-
-
77949511368
-
Pebble and rock band: Heuristic resolution of repeats and scaffolding in the Velvet short-read de novo assembler
-
Zerbino, D.R., McEwen, G.K., Margulies, E.H. & Birney, E. Pebble and Rock Band: heuristic resolution of repeats and scaffolding in the Velvet short-read de novo assembler. PLoS ONE 4, e8407 (2009)
-
(2009)
PLoS ONE
, vol.4
, pp. e8407
-
-
Zerbino, D.R.1
McEwen, G.K.2
Margulies, E.H.3
Birney, E.4
-
30
-
-
79952178131
-
High-quality draft assemblies of mammalian genomes from massively parallel sequence data
-
Gnerre, S. et al. High-quality draft assemblies of mammalian genomes from massively parallel sequence data. Proc. Natl. Acad. Sci. USA 108, 1513-1518 (2011)
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 1513-1518
-
-
Gnerre, S.1
-
31
-
-
0036144823
-
ARACHNE: A whole-genome shotgun assembler
-
Batzoglou, S. et al. ARACHNE: a whole-genome shotgun assembler. Genome Res. 12, 177-189 (2002)
-
(2002)
Genome Res.
, vol.12
, pp. 177-189
-
-
Batzoglou, S.1
-
32
-
-
79959867627
-
ECHO: A reference-free short-read error correction algorithm
-
Kao, W.C., Chan, A.H. & Song, Y.S. ECHO: a reference-free short-read error correction algorithm. Genome Res. 21, 1181-1192 (2011)
-
(2011)
Genome Res.
, vol.21
, pp. 1181-1192
-
-
Kao, W.C.1
Chan, A.H.2
Song, Y.S.3
-
33
-
-
43149086380
-
ALLPATHS: De novo assembly of whole-genome shotgun microreads
-
Butler, J. et al. ALLPATHS: de novo assembly of whole-genome shotgun microreads. Genome Res. 18, 810-820 (2008)
-
(2008)
Genome Res.
, vol.18
, pp. 810-820
-
-
Butler, J.1
|