Initial sequence and comparative analysis of the cat genome

Genome Research

Volumn 17, Issue 11, 2007, Pages 1675-1689

  Pontius, Joan U ^a   Mullikin, James C ^b   Smith, Douglas R ^c   Lindblad Toh, Kerstin ^d   Gnerre, Sante ^d   Clamp, Michele ^d   Chang, Jean ^d   Stephens, Robert ^a   Neelam, Beena ^a   Volfovsky, Natalia ^a   Schäffer, Alejandro A ^e   Agarwala, Richa ^e   Narfström, Kristina ^f   Murphy, William J ^g   Giger, Urs ^h   Roca, Alfred L ^a   Antunes, Agostinho ^i,j,k   Menotti Raymond, Marilyn ⁱ   Yuhki, Naoya ⁱ   Pecon Slattery, Jill ⁱ   Johnson, Warren E ⁱ   Bourque, Guillaume ^l   Tesler, Glenn ^m   O'Brien, Stephen J ⁱ   Brand, Adrianne ^c   Ebling, Heather ^c   Saranga, David J ^c   Rubenfield, Marc ^c   Parisi, Matthew J ^c   Tao, Wei ^c   Tusneem, Nadeem ^c   David, Robert ^c   Gustafson, Erick ^c   Tsolas, Jason ^c   McKernan, Keven ^c   more..

^a SAIC FREDERICK INC   (United States)

^b NATIONAL HUMAN GENOME RESEARCH INSTITUTE   (United States)

^c Agencourt Bioscience Corporation   (United States)

^d BROAD INSTITUTE OF MIT AND HARVARD   (United States)

^e NATIONAL INSTITUTES OF HEALTH   (United States)

^f University of Missouri   (United States)

^g TEXAS A AND M UNIVERSITY   (United States)

^h UNIVERSITY OF PENNSYLVANIA   (United States)

ⁱ NATIONAL CANCER INSTITUTE   (United States)

^j UNIVERSITY OF PORTO   (Portugal)

^k UNIVERSITY OF PORTO   (Portugal)

^l GENOME INSTITUTE OF SINGAPORE   (Singapore)

^m UNIVERSITY OF CALIFORNIA   (United States)

more..

Author keywords

[No Author keywords available]

Indexed keywords

MICRORNA;

ARTICLE; CAT; CHROMOSOME ANALYSIS; CHROMOSOME INVERSION; COMPARATIVE STUDY; EUCHROMATIN; GENE DELETION; GENE INSERTION; GENE MAPPING; GENE SEQUENCE; GENE TRANSLOCATION; GENETIC ASSOCIATION; GENETIC CONSERVATION; GENETIC LINKAGE; GENOME ANALYSIS; HOMOZYGOSITY; HUMAN; INCIDENCE; MAMMAL; MITOCHONDRION; MOLECULAR MODEL; NONHUMAN; NUMT GENE; PRIORITY JOURNAL; RETROVIRUS; SHORT TANDEM REPEAT;

CANIS FAMILIARIS; FELIDAE; FELIS CATUS; MAMMALIA; PAN; RATTUS;

EID: 36048982458     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.6380007     Document Type: Article

References (102)

1. Baker, H., Smith, B.R., Martin, D.R., and Foureman, P. 2001. Consultations in feline internal medicine. W.B. Saunders & Co., Philadelphia.
2. Batzoglou, S., Jaffe, D.B., Stanley, K., Butler, J., Gnerre, S., Mauceli, E., Berger, B., Mesirov, J.P., and Lander, E.S. 2002. ARACHNE: A whole-genome shotgun assembler. Genome Res. 12: 177-189.
3. Beck, T.W., Menninger, J., Murphy, W.J., Nash, W.G., O'Brien, S.J., and Yuhki, N. 2005. The feline major histocompatibility complex is rearranged by an inversion with a breakpoint in the distal class I region. Immunogenetics 56: 702-709.
4. Bejerano, G., Pheasant, M., Makunin, I., Stephen, S., Kent, W.J., Mattick, J.S., and Haussler, D. 2004. Ultraconserved elements in the human genome. Science 304: 1321-1325.
5. Benveniste, R.E., Lieber, M.M., Livingston, D.M., Sherr, C.J., Todaro, G.J., and Kalter, S.S. 1974. Infectious C-type virus isolated from a baboon placenta. Nature 248: 17-20.
6. Berg, T., Tollersrud, O.K., Walkley, S.U., Siegel, D., and Nilssen, Ø. 1997. Purification of feline lysosomal α-mannosidase, determination of its cDNA sequence and identification of a mutation causing α-mannosidosis in Persian cats. Biochem. J. 328: 863-870.
7. Bighignoli, B., Niini, T., Grahn, R.A., Pedersen, N.C., Millon, L.V., Polli, M., Longeri, M., and Lyons, L.A. 2007. Cytidine monophospho-N- acetylneuraminic acid hydroxylase (CMAH) mutations associated with the domestic cat AB blood group. BMC Genet. 8: 27. doi: 10.1186/1471-2156-8-27.
8. Bourque, G. and Pevzner, P.A. 2002. Genome-scale evolution: Reconstructing gene orders in the ancestral species. Genome Res. 12: 26-36.
9. Bourque, G., Pevzner, P.A., and Tesler, G. 2004. Reconstructing the genomic architecture of ancestral mammals: Lessons from human, mouse, and rat genomes. Genome Res. 14: 507-516.
10. Burge, C. and Karlin, S. 1997. Prediction of complete gene structures in human genomic DNA. J. Mol. Biol. 268: 78-94.
11. Chimpanzee Sequencing and Analysis Consortium. 2005. Initial sequence of the chimpanzee genome and comparison with the human genome. Nature 437: 69-87.
12. Coffin, J., Hughes, S., and Varmus, H. 1997. Retroviruses. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
13. Crawley, A.C., Yogalingam, G., Muller, V.J., and Hopwood, J.J. 1998. Two mutations within a feline mucopolysaccharidosis type VI colony cause three different clinical phenotypes. J. Clin. Invest. 101: 109-119.
14. den Dunnen, J.T. and Antonarakis, S.E. 2001. Nomenclature for the description of human sequence variations. Hum. Genet. 109: 121-124.
15. Drögemüller, C., Rüfenacht, S., Wichert, B., and Leeb, T. 2007. Mutations within the FGF5 gene are associated with hair length in cats. Anim. Genet. 38: 218-221.
16. Eizirik, E., Yuhki, N., Johnson, W.E., Menotti-Raymond, M., Hannah, S.S., and O'Brien, S.J. 2003. Molecular genetics and evolution of melanism in the cat family. Curr. Biol. 13: 448-453.
17. The ENCODE Project Consortium. 2004. The ENCODE (ENCyclopedia Of DNA Elements) Project. Science 306: 636-640.
18. Everts-van der Wind, A., Larkin, D.M., Green, C.A., Elliott, J.S., Olmstead, C.A., Chiu, R., Schein, J.E., Marra, M.A., Womack, J.E., and Lewin, H.A. 2005. A high-resolution whole-genome cattle-human comparative map reveals details of mammalian chromosome evolution. Proc. Natl. Acad. Sci. 102: 18526-18531.
19. Fanning, T.G. 1987. Origin and evolution of a major feline satellite DNA. J. Mol. Biol. 197: 627-634.
20. Fanning, T.G., Modi, W.S., Wayne, R.K., and O'Brien, S.J. 1988. Evolution of heterochromatin-associated satellite DNA loci in felids and canids (Carnivora). Cytogenet. Cell Genet. 48: 214-219.
21. The FANTOM Consortium and the RIKEN Exploration Research Group Phase I and II. 2002. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature 420: 563-573.
22. Fyfe, J.C., Giger, U., Van Winkle, T.J., Haskins, M.E., Steinberg, S.A., Wang, P., and Patterson, D.F. 1992. Glycogen storage disease type IV: Inherited deficiency of branching enzyme activity in cats. Pediatr. Res. 32: 719-725.
23. Fyfe, J.C., Kurzhals, R.L., Lassaline, M.E., Henthorn, P.S., Alur, P.R.K., Wang, P., Wolfe, J.H., Giger, U., Haskins, M.E., Patterson, D.F., et al. 1999. Molecular basis of feline β-glucuronidase deficiency: An animal model of mucopolysaccharidosis VII. Genomics 58: 121-128.
24. Fyfe, J.C., Menotti-Raymond, M., David, V.A., Brichta, L., Schäffer, A.A., Agarwala, R., Murphy, W.J., Wedemeyer, W.J., Gregory, B.L., Buzzell, B.G., et al. 2006. An ∼140-kb deletion associated with feline spinal muscular atrophy implies an essential LIX1 function for motor neuron survival. Genome Res. 16: 1084-1090.
25. Fyfe, J.C., Kurzhals, R.L., Hawkins, M.G., Wang, P., Yuhki, N., Giger, U., Van Winkle, T.J., Haskins, M.E., Patterson, D.F., and Henthorn, P.S. 2007. A complex rearrangement in GBE1 causes both perinatal hypoglycemic collapse and late-juvenile-onset neuromuscular degeneration in glycogen storage disease type IV of Norwegian forest cats. Mol. Genet. Metab. 90: 383-392.
26. Giebel, L.B., Tripathi, R.K., King, R.A., and Spritz, R.A. 1991. A tyrosinase gene missense mutation in temperature-sensitive type I oculocutaneous albinism. A human homologue to the Siamese cat and the Himalayan mouse. J. Clin. Invest. 87: 1119-1122.
27. Giger, U., Rajpurohit, Y., Wang, P., Ford, S., Kohn, B., Patterson, D.F., Beutler, E., and Henthorn, P.S. 1997. Molecular basis of erythrocyte pyruvate kinase (R-PK) deficiency in cats. Blood 90S: 5.
28. Giger, U., Tcherneva, E., Caverly, J., Seng, A., Huff, A.M., Cullen, K., Van Hoeven, M., Mazrier, H., and Haskins, M.E. 2006. A missense point mutation in N-acetylglucosamine-1-phosphotransferase causes mucolipidosis II in domestic shorthair cats. J. Vet. Intern. Med. 20: 781.
29. Ginzinger, D.G., Lewis, M.E.S., Ma, Y., Jones, B.R., Liu, G., and Jones, S.D. 1996. A mutation in the lipoprotein lipase gene is the molecular basis of chylomicronemia in a colony of domestic cats. J. Clin. Invest. 97: 1257-1266.
30. Goree, M., Catalfamo, J.L., Aber, S., and Boudreaux, M.K. 2005. Characterization of the mutations causing hemophilia B in 2 domestic cats. J. Vet. Intern. Med. 19: 200-204.
31. Griffin, B. and Baker, H.J. 2000. Domestic cats as laboratory animals. Academic Press, San Diego.
32. Griffith-Jones, S. 2004. The micro-RNA Registry. Nucleic Acids Res. 32: D109-D111. doi: 10.1093/nar/gkh023.
33. Guigó, R., Flicek, P., Abril, J.F., Reymond, A., Lagarde, J., Denoeud, F., Antonarakis, S., Ashburner, M., Bajic, V.B., Birney, E., et al. 2006. EGASP: The human ENCODE Genome Annotation Assessment Project. Genome Biol. 7: S2.1-S2.31. doi: 10.1186/gb-2006-7-s1-s2.
34. He, X., Li, C.-M., Simonaro, C.M., Wan, Q., Haskins, M.E., Desnick, R.J., and Schuchman, E.H. 1999. Identification and characterization of the molecular lesion causing mucopolysaccharidosis type I in cats. Mol. Genet. Metab. 67: 106-112.
35. Hertel, J., Lindemeyer, M., Missal, K., Fried, C., Tanzer, A., Flamm, C., Hofacker, I.L., and Stadler, P.F. 2006. The expansion of the metazoan microRNA repertoire. BMC Genomics 7: 25. doi: 10.1186/1471-2164-7-25.
36. Imes, D.L., Geary, L.A., Grahn, R.A., and Lyons, L.A. 2006. Albinism in the domestic cat (Felis catus) is associated with a tyrosinase (TYR) mutation. Anim. Genet. 37: 175-178.
37. International Human Genome Sequencing Consortium. 2001. Initial sequencing and analysis of the human genome. Nature 409: 860-921.
38. Ishida, Y., David, V.A., Eizirik, E., Schäffer, A.A., Neelam, B.A., Roelke, M.E., Hannah, S.S., O'Brien, S.J., and Menotti-Raymond, M. 2006. A homozygous single-base deletion in MLPH causes the dilute coat color phenotype in the domestic cat. Genomics 88: 698-705.
39. Jaffe, D.B., Butler, J., Gnerre, S., Mauceli, E., Lindblad-Toh, K., Mesirov, J.P., Zody, M.C., and Lander, E.S. 2003. Whole-genome sequence assembly for mammalian genomes: Arachne 2. Genome Res. 13: 91-96.
40. Johnson, W.E., Eizirik, E., Pecon-Slattery, J., Murphy, W.J., Antunes, A., Teeling, E., and O'Brien, S.J. 2006. The late Miocene radiation of modern Felidae: A genetic assessment. Science 311: 73-77.
41. Kehler, J.S., David, V.A., Schäffer, A.A., Bajema, K., Eizirik, E., Ryugo, D.K., Hannah, S.S., O'Brien, S.J., and Menotti-Raymond, M. 2007. Four independent mutations in the Feline Fibroblast Growth Factor 5 gene determine the long-haired phenotype in domestic cats. J. Hered. 98: 555-566.
42. Kim, J.-H., Antunes, A., Luo, S.-J., Menninger, J., Nash, W.G., O'Brien, S.J., and Johnson, W.E. 2006. Evolutionary analysis of a large mtDNA translocation (numt) into the nuclear genome of the Panthera genus species. Gene 366: 292-302.
43. Kirkness, E.F., Bafna, V., Halpern, A.L., Levy, S., Remington, K., Rusch, D.B., Delcher, A.L., Pop, M., Wang, W., Fraser, C.M., et al. 2003. The dog genome: Survey sequencing and comparative analysis. Science 301: 1898-1903.
44. Kuiken, T., Rimmelzwaan, G., van Riel, D., van Amerongen, G., Baars, M., Fouchier, R., and Osterhaus, A. 2004. Avian H5N1 influenza in cats. Science 306: 241.
45. Kumar, S. and Hedges, S.B. 1998. A molecular timescale for vertebrate evolution. Nature 392: 917-920.
46. Lagos-Quintana, M., Rauhut, R., Meyer, J., Borkhardt, A., and Tuschl, T. 2003. New microRNAs from mouse and human. RNA 9: 175-179.
47. Lecellier, C.-H., Dunoyer, P., Arar, K., Lehmann-Che, J., Eyquem, S., Himber, C., Saib, A., and Voinnet, O. 2005. A cellular microRNA mediates antiviral defense in human cells. Science 308: 557-560.
48. Lee, Y., Jeon, K., Lee, J.-T., Kim, S., and Kim, V.N. 2002. MicroRNA maturation: Stepwise processing and subcellular localization. EMBO J. 21: 4663-4670.
49. Li, X., Li, W., Wang, H., Cao, J., Maehashi, K., Huang, L., Bachmanov, A.A., Reed, D.R., Lengrand-Defretin, V., Beauchamp, G.K., et al. 2005. Pseudogenization of a sweet-receptor gene accounts for cats' indifference toward sugar. PLoS Genet. 1: e3. doi:10.1371/journal.pgen.0010003.
50. Lindblad-Toh, K., Wade, C.M., Mikkelsen, T.S., Karlsson, E.K., Jaffe, D.B., Kamal, M., Clamp, M., Chang, J.L., Kulbokas III, E.J., Zody, M.C., et al. 2005. Genome sequence, comparative analysis and haplotype structure of the domestic dog. Nature 438: 803-819.
51. Lopez, J.V., Yuhki, N., Masuda, R., Modi, W., and O'Brien, S.J. 1994. Numt, a recent transfer and tandem amplification of mitochondrial DNA to the nuclear genome of the domestic cat. J. Mol. Evol. 39: 174-190.
52. Lopez, J.V., Cevario, S., and O'Brien, S.J. 1996. Complete nucleotide sequences of the domestic cat (Felis catus) mitochondrial genome and a transposed mtDNA tandem repeat (Numt) in the nuclear genome. Genomics 33: 229-246.
53. Lyons, L.A., Biller, D.S., Erdman, C.A., Lipinski, M.J., Young, A.E., Roe, B.A., Qin, B., and Grahn, R.A. 2004. Feline polycystic kidney disease mutation identified in PKD1. J. Am. Soc. Nephrol. 15: 2548-2555.
54. Lyons, L.A., Imes, D.L., Rah, H.C., and Grahn, R.A. 2005. Tyrosinase mutations associated with Siamese and Burmese patterns in the domestic cat (Felis catus). Anim. Genet. 36: 119-126.
55. Margulis, L. 1970. Origin of eukaryotic cells. Yale University Press, New Haven CT.
56. M2 gangliosidosis variant. Exp. Neurol. 187: 30-37.
57. M2 gangliosidosis. Acta Neuropathol. (Berl.) 110: 443-450.
58. McDougall, A.S., Terry, A., Tzavaras, T., Cheney, C., Rojko, J., and Neil, J.C. 1994. Defective endogenous proviruses are expressed in feline lymphoid cells: Evidence for a role in natural resistance to subgroup B feline leukemia viruses. J. Virol. 68: 2151-2160.
59. Menotti-Raymond, M., David, V.A., Stephens, J.C., Lyons, L.A., and O'Brien, S.J. 1997a. Genetic individualization of domestic cats using feline STR loci for forensic applications. J. Forensic Sci. 42: 1039-1051.
60. Menotti-Raymond, M.A., David, V.A., and O'Brien, S.J. 1997b. Pet cat hair implicates murder suspect. Nature 386: 774.
61. Menotti-Raymond, M., David, V.A., Wachter, L.L., Butler, J.M., and O'Brien, S.J. 2005. A forensic typing system of STR loci for genetic individualizationi of domestic cat (Felis catus) samples. J. Forensic Sci. 50: 1061-1070.
62. Menotti-Raymond, M., David, V.A., Schäffer, A.A., Stephens, R., Wells, D., Kumar-Singh, R., O'Brien, S.J., and Narfström, K. 2007. Mutation in CEP290 discovered for cat model of human retinal degeneration. J. Hered. 98: 211-220.
63. Meurs, K.M., Sanchez, X., David, R.M., Bowles, N.E., Towbin, J.A., Reiser, P.J., Kittleson, J.A., Munro, M.J., Dryburgh, K., MacDonald, K.A., et al. 2005. A cardiac myosin binding protein C mutation in the Maine Coon cat with familial hypertrophic cardiomyopathy. Hum. Mol. Genet. 14: 3587-3593.
64. The MHC Sequencing Consortium. 1999. Complete sequence and gene map of a human major histocompatibility complex. Nature 401: 921-923.
65. Mouse Genome Sequencing Consortium. 2002. Initial sequencing and comparative analysis of the mouse genome. Nature 420: 520-562.
66. M2-gangliosidosis (Sandhoff disease). Am. J. Pathol. 144: 1109-1118.
67. Mullikin, J.C. and Ning, Z. 2003. The Phusion assembler. Genome Res. 13: 81-90.
68. Murphy, W.J., Eizirik, E., O'Brien, S.J., Madsen, O., Scally, M., Douady, C.J., Teeling, E., Ryder, O.A., Stanhope, M.J., De Jong, P., et al. 2001. Resolution of the early placental mammal radiation using Bayesian phylogenetics. Science 294: 2348-2351.
69. Murphy, W.J., Pevzner, P.A., and O'Brien, S.J. 2004. Mammalian phylogenomics comes of age. Trends Genet. 20: 631-639.
70. Murphy, W.J., Larkin, D.M., Everts-van der Wind, A., Bourque, G., Tesler, G., Auvil, L., Beever, J.E., Chowdhary, B.P., Galibert, F., Getzke, L., et al. 2005. Dynamics of mammalian chromosome evolution inferred from multispecies comparative maps. Science 309: 613-617.
71. Murphy, W.J., Davis, B., David, V.A., Agarwala, R., Schäffer, A.A., Pearks Wilkerson, A.J., Neelam, B., O'Brien, S.J., and Menotti-Raymond, M. 2007. A 1.5-Mb-resolution radiation hybrid map of the cat genome and comparative analysis with the canine and human genomes. Genomics 89: 189-196.
72. Nowell, K. and Jackson, P. 1996. Status survey and conservation action plan, wild cats. International Union for Conservation of Nature and Natural Resources, Gland, Switzerland.
73. O'Brien, S.J. 2004. Cats. Curr. Biol. 14: R988-R989.
74. O'Brien, S.J. and Johnson, W.E. 2005. Big cat genomics. Annu. Rev. Genomics Hum. Genet. 6: 407-429.
75. O'Brien, S.J. and Murphy, W.J. 2003. Genomics. A dog's breakfast? Science 301: 1854-1855.
76. O'Brien, S.J., Menotti-Raymond, M., Murphy, W.J., Nash, W.G., Wienberg, J., Stanyon, R., Copeland, N.G., Jenkins, N.A., Womack, J.E., and Marshall Graves, J.A. 1999. The promise of comparative genomics in mammals. Science 286: 458-481.
77. O'Brien, S.J., Menotti-Raymond, M., Murphy, W.J., and Yuhki, N. 2002. The Feline Genome Project. Annu. Rev. Genet. 36: 657-686.
78. Pecon-Slattery, J., Sanner-Wachter, L., and O'Brien, S.J. 2000. Novel gene conversion between X-Y homologues located in the nonrecombining region of the Y chromosome in Felidae (Mammalia). Proc. Natl. Acad. Sci. 97: 5307-5312.
79. Pecon-Slattery, J., Pearks Wilkerson, A.J., Murphy, W.J., and O'Brien, S.J. 2004. Phylogenetic assessment of introns and SINEs within the Y chromosome using the cat family Felidae as a species tree. Mol. Biol. Evol. 21: 2299-2309.
80. Pevzner, P.A. and Tesler, G. 2003. Genome rearrangements in mammalian evolution: Lessons from human and mouse genome sequences. Genome Res. 13: 13-26.
81. Pontius, J.U. and O'Brien, S.J. 2007. Genome Annotation Resource Fields - GARFIELD: a genome browser for Felis catus. J. Hered. 98: 386-389.
82. Rat Genome Sequencing Project Consortium. 2004. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature 428: 493-521.
83. Reeves, R.H. and O'Brien, S.J. 1984. Molecular genetic characterization of the RD-114 gene family of endogenous feline retroviral sequences. J. Virol. 52: 164-171.
84. + cells using amphotropic-, GALV-, or RD114-pseudotyped HIV-1-based vectors from stable producer cells. Mol. Ther. 11: 452-459.
85. Richly, E. and Leister, D. 2004. NUMTs in sequenced eukaryotic genomes. Mol. Biol. Evol. 21: 1081-1084.
86. Roca, A.L., Nash, W.G., Menninger, J.C., Murphy, W.J., and O'Brien, S.J. 2005. Insertional polymorphisms of endogenous feline leukemia viruses. J. Virol. 79: 3979-3986.
87. Roy-Burman, P. 1995. Endogenous env elements: Partners in generation of pathogenic feline leukemia viruses. Virus Genes 11: 147-161.
88. Schmidt-Küntzel, A., Eizirik, E., O'Brien, S.J., and Menotti-Raymond, M. 2005. Tyrosinase and tyrosinase related protein 1 alleles specify domestic cat coat color phenotypes of the albino and brown loci. J. Hered. 96: 289-301.
89. Siepel, A., Bejerano, G., Pedersen, J.S., Hinrichs, A.S., Hou, M., Rosenbloom, K., Clawson, H., Spieth, J., Hillier, L.W., Richards, S., et al. 2005. Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. Genome Res. 15: 1034-1050.
90. Smit, A.F.A. 1996. The origin of interspersed repeats in the human genome. Curr. Opin. Genet. Dev. 6: 743-748.
91. Somers, K.L., Royals, M.A., Carstea, E.D., Rafi, M.A., Wenger, D.A., and Thrall, M.A. 2003. Mutation analysis of feline Niemann-Pick C1 disease. Mol. Genet. Metab. 79: 99-103.
92. Springer, M.S., Murphy, W.J., Eizirik, E., and O'Brien, S.J. 2003. Placental mammal diversification and the Cretaceous-Tertiary boundary. Proc. Natl. Acad. Sci. 100: 1056-1061.
93. Tesler, G. 2002a. GRIMM: Genome rearrangements web server. Bioinformatics 18: 492-493.
94. Tesler, G. 2002b. Efficient algorithms for multichromosomal genome rearrangements. J. Comp. Sys. Sci. 65: 587-609.
95. Ting-De Ravin, S.S., Kennedy, D.R., Naumann, N., Kennedy, J.S., Choi, U., Hartnett, B.J., Linton, G.F., Whiting-Theobald, N.L., Moore, P.F., Vernau, W., et al. 2006. Correction of canine X-linked severe combined immunodeficiency by in vivo retroviral gene therapy. Blood 107: 3091-3097.
96. Vassetzky, N.S. and Kramerov, D.A. 2002. CAN - A pan-carnivore SINE family. Mamm. Genome 13: 50-57.
97. Venter, J.C., Adams, M.D., Myers, E.W., Li, P.W., Mural, R.J., Sutton, G.G., Smith, H.O., Yandell, M., Evans, C.A., Holt, R.A., et al. 2001. The sequence of the human genome. Science 291: 1304-1351.
98. Wallace, D.C. 2005. The mitochondrial genome in human adaptive radiation and disease: On the road to therapeutics and performance enhancement. Gene 354: 169-180.
99. Wheeler, D.L., Barrett, T., Benson, D.A., Bryant, S.H., Canese, K., Church, D.M., DiCuccio, M., Edgar, R., Federhen, S., Helmberg, W., et al. 2005. Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 33: D39-D45. doi:10.1093/nar/gki062.
100. Winand, N.J., Edwards, M., Pradhan, D., Berian, C.A., and Cooper, B.J. 1994. Deletion of the dystrophin muscle promoter in feline muscular dystrophy. Neuromuscul. Disord. 4: 433-445.
101. Yuhki, N., Beck, T., Stephens, R.M., Nishigaki, Y., Newmann, K., and O'Brien, S.J. 2003. Comparative genome organization of human, murine, and feline MHC class II region. Genome Res. 13: 1169-1179.
102. Zhang, Z., Schwartz, S., Wagner, L., and Miller, W. 2000. A greedy algorithm for aligning DNA sequences. J. Comput. Biol. 7: 203-214.