BS-Seeker2: A versatile aligning pipeline for bisulfite sequencing data

BMC Genomics

Volumn 14, Issue 1, 2013, Pages

  Guo, Weilong ^a,b   Fiziev, Petko ^c   Yan, Weihong ^b   Cokus, Shawn ^b   Sun, Xueguang ^d   Zhang, Michael Q ^a,e   Chen, Pao Yang ^f   Pellegrini, Matteo ^b  

^a TSINGHUA UNIVERSITY   (China)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

^d Zymo Research Corporation   (United States)

^e UNIVERSITY OF TEXAS AT DALLAS   (United States)

^f INSTITUTE OF PLANT AND MICROBIAL BIOLOGY   (Taiwan)

Author keywords

Bisulfite conversion failure; Bisulfite sequencing aligner; BS Seeker; DNA methylation; Galaxy toolshed; RRBS; WGBS

Indexed keywords

BISULFITE; DNA;

ARTICLE; COMPUTER PROGRAM; DNA LIBRARY; DNA METHYLATION; GENE CONVERSION; GENE MAPPING; GENETIC DATABASE; HUMAN; INTERMETHOD COMPARISON; MEASUREMENT ACCURACY; NONHUMAN; NUCLEOTIDE SEQUENCE; PROCESS DEVELOPMENT; PROCESS MODEL; REDUCED REPRESENTED BISULFITE SEQUENCING LIBRARY; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; WHOLE GENOME BISULFITE SEQUENCING LIBRARY;

CPG ISLANDS; DNA METHYLATION; GENOME, HUMAN; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HUMANS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SOFTWARE; SULFITES;

EID: 84887077170     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-14-774     Document Type: Article

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