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Volumn 101, Issue 6, 2013, Pages 345-353

Next-generation sequencing reveals genomic features in the Japanese quail

Author keywords

Genome; Japanese quail; Microsatellite; Next generation sequencing technology

Indexed keywords

CONTIG; GENOMIC DNA;

EID: 84877922969     PISSN: 08887543     EISSN: 10898646     Source Type: Journal    
DOI: 10.1016/j.ygeno.2013.03.006     Document Type: Article
Times cited : (65)

References (45)
  • 1
    • 0347093513 scopus 로고    scopus 로고
    • Calibration of galliform molecular clocks using multiple fossils and genetic partitions
    • Van Tuinen M., Dyke G.J. Calibration of galliform molecular clocks using multiple fossils and genetic partitions. Mol. Phylogenet. Evol. 2004, 30:74-86.
    • (2004) Mol. Phylogenet. Evol. , vol.30 , pp. 74-86
    • Van Tuinen, M.1    Dyke, G.J.2
  • 2
    • 0035143484 scopus 로고    scopus 로고
    • Calibration of avian molecular clocks
    • Van Tuinen M., Hedges S.B. Calibration of avian molecular clocks. Mol. Biol. Evol. 2001, 18:206-213.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 206-213
    • Van Tuinen, M.1    Hedges, S.B.2
  • 3
    • 77955662275 scopus 로고    scopus 로고
    • The complete mitochondrial genomes of the whistling duck (Dendrocygna javanica) and black swan (Cygnus atratus): dating evolutionary divergence in Galloanserae
    • Jiang F., Miao Y., Liang W., Ye H., Liu H., Liu B. The complete mitochondrial genomes of the whistling duck (Dendrocygna javanica) and black swan (Cygnus atratus): dating evolutionary divergence in Galloanserae. Mol. Biol. Rep. 2010, 37:3001-3015.
    • (2010) Mol. Biol. Rep. , vol.37 , pp. 3001-3015
    • Jiang, F.1    Miao, Y.2    Liang, W.3    Ye, H.4    Liu, H.5    Liu, B.6
  • 5
    • 0023712294 scopus 로고
    • Application of the quail-chick chimera system to the study of brain development and behavior
    • Balaban E., Teillet M.A., Le Douarin N. Application of the quail-chick chimera system to the study of brain development and behavior. Science 1988, 241:1339-1342.
    • (1988) Science , vol.241 , pp. 1339-1342
    • Balaban, E.1    Teillet, M.A.2    Le Douarin, N.3
  • 6
    • 53249133068 scopus 로고    scopus 로고
    • The Japanese quail: a review
    • Vali N. The Japanese quail: a review. Int. J. Poult. Sci. 2008, 7:925-931.
    • (2008) Int. J. Poult. Sci. , vol.7 , pp. 925-931
    • Vali, N.1
  • 9
    • 0344441889 scopus 로고    scopus 로고
    • Light-induced hormone conversion of T4 to T3 regulates photoperiodic response of gonads in birds
    • Yoshimura T., Yasuo S., Watanabe M., Iigo M., Yamamura T., Hirunagi K., Ebihara S. Light-induced hormone conversion of T4 to T3 regulates photoperiodic response of gonads in birds. Nature 2003, 426:178-181.
    • (2003) Nature , vol.426 , pp. 178-181
    • Yoshimura, T.1    Yasuo, S.2    Watanabe, M.3    Iigo, M.4    Yamamura, T.5    Hirunagi, K.6    Ebihara, S.7
  • 11
    • 0002680178 scopus 로고
    • Mutations and major variants in Japanese quail
    • Elsevier, Amsterdam, R. Crowford (Ed.)
    • Cheng H., Kimura M. Mutations and major variants in Japanese quail. Poultry Breeding and Genetics 1990, 333-362. Elsevier, Amsterdam. R. Crowford (Ed.).
    • (1990) Poultry Breeding and Genetics , pp. 333-362
    • Cheng, H.1    Kimura, M.2
  • 12
    • 48249144416 scopus 로고    scopus 로고
    • Mutations of Japanese quail (Coturnix japonica) and recent advances of molecular genetics for this species
    • Tsudzuki M. Mutations of Japanese quail (Coturnix japonica) and recent advances of molecular genetics for this species. J. Poult. Sci. 2008, 45:159-179.
    • (2008) J. Poult. Sci. , vol.45 , pp. 159-179
    • Tsudzuki, M.1
  • 14
    • 20944440779 scopus 로고    scopus 로고
    • Second report on chicken genes and chromosomes 2005
    • Schmid M., Nanda I., Burt D.W. Second report on chicken genes and chromosomes 2005. Cytogenet. Genome Res. 2005, 109:415-479.
    • (2005) Cytogenet. Genome Res. , vol.109 , pp. 415-479
    • Schmid, M.1    Nanda, I.2    Burt, D.W.3
  • 16
    • 0026399675 scopus 로고
    • On the evolution of genome size of birds
    • Tiersch T.R., Wachtel S.S. On the evolution of genome size of birds. J. Hered. 1991, 82:363-442.
    • (1991) J. Hered. , vol.82 , pp. 363-442
    • Tiersch, T.R.1    Wachtel, S.S.2
  • 18
    • 0009042316 scopus 로고
    • Chicken-quail hybrids
    • Wilcox F.H., Clark C.E. Chicken-quail hybrids. J. Hered. 1961, 52:167-170.
    • (1961) J. Hered. , vol.52 , pp. 167-170
    • Wilcox, F.H.1    Clark, C.E.2
  • 21
    • 10644283823 scopus 로고    scopus 로고
    • Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    • Consortium I.C.G.S. Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 2004, 432:695-716.
    • (2004) Nature , vol.432 , pp. 695-716
    • Consortium, I.C.G.S.1
  • 25
    • 0021416540 scopus 로고
    • Selective breeding for high and low antibody responses to inactivated Newcastle disease virus in Japanese quails
    • Takahashi S., Inooka S., Mizuma Y. Selective breeding for high and low antibody responses to inactivated Newcastle disease virus in Japanese quails. Poult. Sci. 1984, 63:595-599.
    • (1984) Poult. Sci. , vol.63 , pp. 595-599
    • Takahashi, S.1    Inooka, S.2    Mizuma, Y.3
  • 26
    • 4344630725 scopus 로고    scopus 로고
    • MHC class IIB gene sequences and expression in quails (Coturnix japonica) selected for high and low antibody responses
    • Shimizu S., Shiina T., Hosomichi K., Takahashi S., Koyama T., Onodera T., Kulski J.K., Inoko H. MHC class IIB gene sequences and expression in quails (Coturnix japonica) selected for high and low antibody responses. Immunogenetics 2004, 56:280-291.
    • (2004) Immunogenetics , vol.56 , pp. 280-291
    • Shimizu, S.1    Shiina, T.2    Hosomichi, K.3    Takahashi, S.4    Koyama, T.5    Onodera, T.6    Kulski, J.K.7    Inoko, H.8
  • 27
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H., Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 2009, 25:1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 29
    • 77949587649 scopus 로고    scopus 로고
    • Fast and accurate long-read alignment with Burrows-Wheeler transform
    • Li H., Durbin R. Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics 2010, 26:589-595.
    • (2010) Bioinformatics , vol.26 , pp. 589-595
    • Li, H.1    Durbin, R.2
  • 32
    • 40049091292 scopus 로고    scopus 로고
    • Using native and syntenically mapped cDNA alignments to improve de novo gene finding
    • Stanke M., Diekhans M., Baertsch R., Haussler D. Using native and syntenically mapped cDNA alignments to improve de novo gene finding. Bioinformatics 2008, 24:637-644.
    • (2008) Bioinformatics , vol.24 , pp. 637-644
    • Stanke, M.1    Diekhans, M.2    Baertsch, R.3    Haussler, D.4
  • 33
    • 33745634395 scopus 로고    scopus 로고
    • Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
    • Li W., Godzik A. Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 2006, 22:1658-1659.
    • (2006) Bioinformatics , vol.22 , pp. 1658-1659
    • Li, W.1    Godzik, A.2
  • 36
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang D.W., Sherman B.T., Lempicki R.A. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc. 2009, 4:44-57.
    • (2009) Nat. Protoc. , vol.4 , pp. 44-57
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 37
    • 58549112996 scopus 로고    scopus 로고
    • Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
    • Huang D.W., Sherman B.T., Lempicki R.A. Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res. 2009, 37:1-13.
    • (2009) Nucleic Acids Res. , vol.37 , pp. 1-13
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 38
    • 2542425766 scopus 로고    scopus 로고
    • Convert: a user-friendly program to reformat diploid genotypic data for commonly used population genetic software packages
    • Glaubitz J.C. Convert: a user-friendly program to reformat diploid genotypic data for commonly used population genetic software packages. Mol. Ecol. Notes 2004, 4:309-310.
    • (2004) Mol. Ecol. Notes , vol.4 , pp. 309-310
    • Glaubitz, J.C.1
  • 39
    • 33847074909 scopus 로고    scopus 로고
    • Revising how the computer program CERVUS accommodates genotyping error increases success in paternity assignment
    • Kalinowski S.T., Taper M.L., Marshall T.C. Revising how the computer program CERVUS accommodates genotyping error increases success in paternity assignment. Mol. Ecol. 2007, 16:1099-1106.
    • (2007) Mol. Ecol. , vol.16 , pp. 1099-1106
    • Kalinowski, S.T.1    Taper, M.L.2    Marshall, T.C.3
  • 40
    • 0000262278 scopus 로고
    • GENEPOP (Version 1.2): population genetics software for exact tests and ecumenicism
    • Raymond M., Rousset F. GENEPOP (Version 1.2): population genetics software for exact tests and ecumenicism. J. Hered. 1995, 86:248-249.
    • (1995) J. Hered. , vol.86 , pp. 248-249
    • Raymond, M.1    Rousset, F.2
  • 41
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N., Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 1987, 4:406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 42
    • 77952307333 scopus 로고    scopus 로고
    • POPTREE2: software for constructing population trees from allele frequency data and computing other population statistics with Windows interface
    • Takezaki N., Nei M., Tamura K. POPTREE2: software for constructing population trees from allele frequency data and computing other population statistics with Windows interface. Mol. Biol. Evol. 2010, 27:747-752.
    • (2010) Mol. Biol. Evol. , vol.27 , pp. 747-752
    • Takezaki, N.1    Nei, M.2    Tamura, K.3
  • 43
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard J.K., Stephens M., Donnelly P. Inference of population structure using multilocus genotype data. Genetics 2000, 155:945-959.
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 44
    • 84882759440 scopus 로고    scopus 로고
    • STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method
    • Earl D., vonHoldt B. STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method. Conserv. Genet. Resour. 2012, 4:359-361.
    • (2012) Conserv. Genet. Resour. , vol.4 , pp. 359-361
    • Earl, D.1    vonHoldt, B.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.