-
1
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead, B., Trapnell, C., Pop, M. & Salzberg, S.L. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 10, R25 (2009).
-
(2009)
Genome Biol.
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
2
-
-
77949587649
-
Fast and accurate long-read alignment with Burrows-Wheeler transform
-
Li, H. & Durbin, R. Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics 26, 589-595 (2010).
-
(2010)
Bioinformatics
, vol.26
, pp. 589-595
-
-
Li, H.1
Durbin, R.2
-
3
-
-
55549097836
-
Mapping short DNA sequencing reads and calling variants using mapping quality scores
-
Li, H., Ruan, J. & Durbin, R. Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res. 18, 1851-1858 (2008).
-
(2008)
Genome Res.
, vol.18
, pp. 1851-1858
-
-
Li, H.1
Ruan, J.2
Durbin, R.3
-
4
-
-
40049104732
-
SOAP: Short oligonucleotide alignment program
-
DOI 10.1093/bioinformatics/btn025
-
Li, R., Li, Y., Kristiansen, K. & Wang, J. SOAP: short oligonucleotide alignment program. Bioinformatics 24, 713-714 (2008). (Pubitemid 351321217)
-
(2008)
Bioinformatics
, vol.24
, Issue.5
, pp. 713-714
-
-
Li, R.1
Li, Y.2
Kristiansen, K.3
Wang, J.4
-
5
-
-
79956307251
-
Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads
-
Lunter, G. & Goodson, M. Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence reads. Genome Res. 21, 936-939 (2011).
-
(2011)
Genome Res.
, vol.21
, pp. 936-939
-
-
Lunter, G.1
Goodson, M.2
-
6
-
-
77956295988
-
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
-
McKenna, A. et al. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 20, 1297-1303 (2010).
-
(2010)
Genome Res.
, vol.20
, pp. 1297-1303
-
-
McKenna, A.1
-
7
-
-
79957932376
-
Dindel: Accurate indel calls from short-read data
-
Albers, C.A. et al. Dindel: accurate indel calls from short-read data. Genome Res. 21, 961-973 (2011).
-
(2011)
Genome Res.
, vol.21
, pp. 961-973
-
-
Albers, C.A.1
-
8
-
-
67649580757
-
MoDIL: Detecting small indels from clone-end sequencing with mixtures of distributions
-
Lee, S., Hormozdiari, F., Alkan, C. & Brudno, M. MoDIL: detecting small indels from clone-end sequencing with mixtures of distributions. Nat. Methods 6, 473-474 (2009).
-
(2009)
Nat. Methods
, vol.6
, pp. 473-474
-
-
Lee, S.1
Hormozdiari, F.2
Alkan, C.3
Brudno, M.4
-
9
-
-
77952814990
-
Detection and characterization of novel sequence insertions using paired-end next-generation sequencing
-
Hajirasouliha, I. et al. Detection and characterization of novel sequence insertions using paired-end next-generation sequencing. Bioinformatics 26, 1277-1283 (2010).
-
(2010)
Bioinformatics
, vol.26
, pp. 1277-1283
-
-
Hajirasouliha, I.1
-
10
-
-
79952194317
-
Discovery and genotyping of genome structural polymorphism by sequencing on a population scale
-
Handsaker, R.E., Korn, J.M., Nemesh, J. & McCarroll, S.A. Discovery and genotyping of genome structural polymorphism by sequencing on a population scale. Nat. Genet. 43, 269-276 (2011).
-
(2011)
Nat. Genet.
, vol.43
, pp. 269-276
-
-
Handsaker, R.E.1
Korn, J.M.2
Nemesh, J.3
McCarroll, S.A.4
-
11
-
-
62549131646
-
PEMer: A computational framework with simulation-based error models for inferring genomic structural variants from massive paired-end sequencing data
-
Korbel, J.O. et al. PEMer: a computational framework with simulation-based error models for inferring genomic structural variants from massive paired-end sequencing data. Genome Biol. 10, R23 (2009).
-
(2009)
Genome Biol.
, vol.10
-
-
Korbel, J.O.1
-
12
-
-
35348988679
-
Paired-end mapping reveals extensive structural variation in the human genome
-
DOI 10.1126/science.1149504
-
Korbel, J.O. et al. Paired-end mapping reveals extensive structural variation in the human genome. Science 318, 420-426 (2007). (Pubitemid 47614521)
-
(2007)
Science
, vol.318
, Issue.5849
, pp. 420-426
-
-
Korbel, J.O.1
Urban, A.E.2
Affourtit, J.P.3
Godwin, B.4
Grubert, F.5
Simons, J.F.6
Kim, P.M.7
Palejev, D.8
Carriero, N.J.9
Du, L.10
Taillon, B.E.11
Chen, Z.12
Tanzer, A.13
Saunders, A.C.E.14
Chi, J.15
Yang, F.16
Carter, N.P.17
Hurles, M.E.18
Weissman, S.M.19
Harkins, T.T.20
Gerstein, M.B.21
Egholm, M.22
Snyder, M.23
more..
-
13
-
-
84975804424
-
Mapping copy number variation by population-scale genome sequencing
-
Mills, R.E. et al. Mapping copy number variation by population-scale genome sequencing. Nature 470, 59-65 (2011).
-
(2011)
Nature
, vol.470
, pp. 59-65
-
-
Mills, R.E.1
-
14
-
-
22844451617
-
Fine-scale structural variation of the human genome
-
DOI 10.1038/ng1562
-
Tuzun, E. et al. Fine-scale structural variation of the human genome. Nat. Genet. 37, 727-732 (2005). (Pubitemid 41754889)
-
(2005)
Nature Genetics
, vol.37
, Issue.7
, pp. 727-732
-
-
Tuzun, E.1
Sharp, A.J.2
Bailey, J.A.3
Kaul, R.4
Morrison, V.A.5
Pertz, L.M.6
Haugen, E.7
Hayden, H.8
Albertson, D.9
Pinkel, D.10
Olson, M.V.11
Eichler, E.E.12
-
15
-
-
55549089660
-
Accurate whole human genome sequencing using reversible terminator chemistry
-
Bentley, D.R. et al. Accurate whole human genome sequencing using reversible terminator chemistry. Nature 456, 53-59 (2008).
-
(2008)
Nature
, vol.456
, pp. 53-59
-
-
Bentley, D.R.1
-
16
-
-
55549097849
-
The diploid genome sequence of an Asian individual
-
Wang, J. et al. The diploid genome sequence of an Asian individual. Nature 456, 60-65 (2008).
-
(2008)
Nature
, vol.456
, pp. 60-65
-
-
Wang, J.1
-
17
-
-
84975742565
-
A map of human genome variation from population-scale sequencing
-
1000 Genomes Project Consortium
-
-1000 Genomes Project Consortium. A map of human genome variation from population-scale sequencing. Nature 467, 1061-1073 (2010).
-
(2010)
Nature
, vol.467
, pp. 1061-1073
-
-
-
18
-
-
26444580130
-
The cobweb of life revealed by genome-scale estimates of horizontal gene transfer
-
Ge, F., Wang, L.S. & Kim, J. The cobweb of life revealed by genome-scale estimates of horizontal gene transfer. PLoS Biol. 3, e316 (2005).
-
(2005)
PLoS Biol.
, vol.3
-
-
Ge, F.1
Wang, L.S.2
Kim, J.3
-
19
-
-
26444506791
-
Highways of gene sharing in prokaryotes
-
DOI 10.1073/pnas.0504068102
-
Beiko, R.G., Harlow, T.J. & Ragan, M.A. Highways of gene sharing in prokaryotes. Proc. Natl. Acad. Sci. USA 102, 14332-14337 (2005). (Pubitemid 41429698)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.40
, pp. 14332-14337
-
-
Beiko, R.G.1
Harlow, T.J.2
Ragan, M.A.3
-
20
-
-
79551676183
-
A multi-site study using high-resolution HLA genotyping by next generation sequencing
-
Holcomb, C.L. et al. A multi-site study using high-resolution HLA genotyping by next generation sequencing. Tissue Antigens 77, 206-217 (2011).
-
(2011)
Tissue Antigens
, vol.77
, pp. 206-217
-
-
Holcomb, C.L.1
-
21
-
-
84880321899
-
Second-generation environmental sequencing unmasks marine metazoan biodiversity
-
Fonseca, V.G. et al. Second-generation environmental sequencing unmasks marine metazoan biodiversity. Nat. Commun. 1, 98 (2010).
-
(2010)
Nat. Commun.
, vol.1
, pp. 98
-
-
Fonseca, V.G.1
-
22
-
-
4444291843
-
Detection of large-scale variation in the human genome
-
DOI 10.1038/ng1416
-
Iafrate, A.J. et al. Detection of large-scale variation in the human genome. Nat. Genet. 36, 949-951 (2004). (Pubitemid 39167488)
-
(2004)
Nature Genetics
, vol.36
, Issue.9
, pp. 949-951
-
-
Iafrate, A.J.1
Feuk, L.2
Rivera, M.N.3
Listewnik, M.L.4
Donahoe, P.K.5
Qi, Y.6
Scherer, S.W.7
Lee, C.8
-
23
-
-
33751329250
-
Global variation in copy number in the human genome
-
DOI 10.1038/nature05329, PII NATURE05329
-
Redon, R. et al. Global variation in copy number in the human genome. Nature 444, 444-454 (2006). (Pubitemid 44809057)
-
(2006)
Nature
, vol.444
, Issue.7118
, pp. 444-454
-
-
Redon, R.1
Ishikawa, S.2
Fitch, K.R.3
Feuk, L.4
Perry, G.H.5
Andrews, T.D.6
Fiegler, H.7
Shapero, M.H.8
Carson, A.R.9
Chen, W.10
Cho, E.K.11
Dallaire, S.12
Freeman, J.L.13
Gonzalez, J.R.14
Gratacos, M.15
Huang, J.16
Kalaitzopoulos, D.17
Komura, D.18
MacDonald, J.R.19
Marshall, C.R.20
Mei, R.21
Montgomery, L.22
Nishimura, K.23
Okamura, K.24
Shen, F.25
Somerville, M.J.26
Tchinda, J.27
Valsesia, A.28
Woodwark, C.29
Yang, F.30
Zhang, J.31
Zerjal, T.32
Zhang, J.33
Armengol, L.34
Conrad, D.F.35
Estivill, X.36
Tyler-Smith, C.37
Carter, N.P.38
Aburatani, H.39
Lee, C.40
Jones, K.W.41
Scherer, S.W.42
Hurles, M.E.43
more..
-
24
-
-
3242808027
-
Large-scale copy number polymorphism in the human genome
-
DOI 10.1126/science.1098918
-
Sebat, J. et al. Large-scale copy number polymorphism in the human genome. Science 305, 525-528 (2004). (Pubitemid 38971344)
-
(2004)
Science
, vol.305
, Issue.5683
, pp. 525-528
-
-
Sebat, J.1
Lakshmi, B.2
Troge, J.3
Alexander, J.4
Young, J.5
Lundin, P.6
Maner, S.7
Massa, H.8
Walker, M.9
Chi, M.10
Navin, N.11
Lucito, R.12
Healy, J.13
Hicks, J.14
Ye, K.15
Reiner, A.16
Gilliam, T.C.17
Trask, B.18
Patterson, N.19
Zetterberg, A.20
Wigler, M.21
more..
-
25
-
-
20544462642
-
Segmental duplications and copy-number variation in the human genome
-
DOI 10.1086/431652
-
Sharp, A.J. et al. Segmental duplications and copy-number variation in the human genome. Am. J. Hum. Genet. 77, 78-88 (2005). (Pubitemid 40848038)
-
(2005)
American Journal of Human Genetics
, vol.77
, Issue.1
, pp. 78-88
-
-
Sharp, A.J.1
Locke, D.P.2
McGrath, S.D.3
Cheng, Z.4
Bailey, J.A.5
Vallente, R.U.6
Pertz, L.M.7
Clark, R.A.8
Schwartz, S.9
Segraves, R.10
Oseroff, V.V.11
Albertson, D.G.12
Pinkel, D.13
Eichler, E.E.14
-
26
-
-
43049143055
-
Mapping and sequencing of structural variation from eight human genomes
-
DOI 10.1038/nature06862, PII NATURE06862
-
Kidd, J.M. et al. Mapping and sequencing of structural variation from eight human genomes. Nature 453, 56-64 (2008). (Pubitemid 351630326)
-
(2008)
Nature
, vol.453
, Issue.7191
, pp. 56-64
-
-
Kidd, J.M.1
Cooper, G.M.2
Donahue, W.F.3
Hayden, H.S.4
Sampas, N.5
Graves, T.6
Hansen, N.7
Teague, B.8
Alkan, C.9
Antonacci, F.10
Haugen, E.11
Zerr, T.12
Yamada, N.A.13
Tsang, P.14
Newman, T.L.15
Tuzun, E.16
Cheng, Z.17
Ebling, H.M.18
Tusneem, N.19
David, R.20
Gillett, W.21
Phelps, K.A.22
Weaver, M.23
Saranga, D.24
Brand, A.25
Tao, W.26
Gustafson, E.27
McKernan, K.28
Chen, L.29
Malig, M.30
Smith, J.D.31
Korn, J.M.32
McCarroll, S.A.33
Altshuler, D.A.34
Peiffer, D.A.35
Dorschner, M.36
Stamatoyannopoulos, J.37
Schwartz, D.38
Nickerson, D.A.39
Mullikin, J.C.40
Wilson, R.K.41
Bruhn, L.42
Olson, M.V.43
Kaul, R.44
Smith, D.R.45
Eichler, E.E.46
more..
-
27
-
-
0029312158
-
Toward simplifying and accurately formulating fragment assembly
-
Myers, E.W. Toward simplifying and accurately formulating fragment assembly. J. Comput. Biol. 2, 275-290 (1995).
-
(1995)
J. Comput. Biol.
, vol.2
, pp. 275-290
-
-
Myers, E.W.1
-
28
-
-
27544497879
-
The fragment assembly string graph
-
DOI 10.1093/bioinformatics/bti1114
-
Myers, E.W. The fragment assembly string graph. Bioinformatics 21 (suppl. 2), ii79-ii85 (2005). (Pubitemid 41535433)
-
(2005)
Bioinformatics
, vol.21
, Issue.SUPPL. 2
-
-
Myers, E.W.1
-
29
-
-
77954238055
-
Efficient construction of an assembly string graph using the FM-index
-
Simpson, J.T. & Durbin, R. Efficient construction of an assembly string graph using the FM-index. Bioinformatics 26, i367-i373 (2010).
-
(2010)
Bioinformatics
, vol.26
-
-
Simpson, J.T.1
Durbin, R.2
-
30
-
-
43149115851
-
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
-
DOI 10.1101/gr.074492.107
-
Zerbino, D.R. & Birney, E. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18, 821-829 (2008). (Pubitemid 351645072)
-
(2008)
Genome Research
, vol.18
, Issue.5
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
31
-
-
79952178131
-
High-quality draft assemblies of mammalian genomes from massively parallel sequence data
-
Gnerre, S. et al. High-quality draft assemblies of mammalian genomes from massively parallel sequence data. Proc. Natl. Acad. Sci. USA 108, 1513-1518 (2011).
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 1513-1518
-
-
Gnerre, S.1
-
32
-
-
75649124547
-
De novo assembly of human genomes with massively parallel short read sequencing
-
Li, R. et al. De novo assembly of human genomes with massively parallel short read sequencing. Genome Res. 20, 265-272 (2010).
-
(2010)
Genome Res.
, vol.20
, pp. 265-272
-
-
Li, R.1
-
33
-
-
2442629464
-
The diploid genome sequence of Candida albicans
-
DOI 10.1073/pnas.0401648101
-
Jones, T. et al. The diploid genome sequence of Candida albicans. Proc. Natl. Acad. Sci. USA 101, 7329-7334 (2004). (Pubitemid 38638032)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.19
, pp. 7329-7334
-
-
Jones, T.1
Federspiel, N.A.2
Chibana, H.3
Dungan, J.4
Kalman, S.5
Magee, B.B.6
Newport, G.7
Thorstenson, Y.R.8
Agabian, N.9
Magee, P.T.10
Davis, R.W.11
Scherer, S.12
-
34
-
-
23744446773
-
Assembly of polymorphic genomes: Algorithms and application to Ciona savignyi
-
DOI 10.1101/gr.3722605
-
Vinson, J.P. et al. Assembly of polymorphic genomes: algorithms and application to Ciona savignyi. Genome Res. 15, 1127-1135 (2005). (Pubitemid 41126868)
-
(2005)
Genome Research
, vol.15
, Issue.8
, pp. 1127-1135
-
-
Vinson, J.P.1
Jaffe, D.B.2
O'Neill, K.3
Karlsson, E.K.4
Stange-Thomann, N.5
Anderson, S.6
Mesirov, J.P.7
Satoh, N.8
Satou, Y.9
Nusbaum, C.10
Birren, B.11
Galagan, J.E.12
Lander, E.S.13
-
35
-
-
34347376733
-
Diploid genome reconstruction of Ciona intestinalis and comparative analysis with Ciona savignyi
-
DOI 10.1101/gr.5894107
-
Kim, J.H., Waterman, M.S. & Li, L.M. Diploid genome reconstruction of Ciona intestinalis and comparative analysis with Ciona savignyi. Genome Res. 17, 1101-1110 (2007). (Pubitemid 47026357)
-
(2007)
Genome Research
, vol.17
, Issue.7
, pp. 1101-1110
-
-
Jong, H.K.1
Waterman, M.S.2
Li, L.M.3
-
36
-
-
79953175254
-
Hapsembler: An assembler for highly polymorphic genomes
-
Research in Computational Molecular Biology (eds. Bafna, V. & Sahinalp, S.) Springer, Berlin, Heidelberg
-
Donmez, N. & Brudno, M. Hapsembler: an assembler for highly polymorphic genomes. in Research in Computational Molecular Biology, Lecture Notes in Computer Science Vol. 6577 (eds. Bafna, V. & Sahinalp, S.), 38-52 (Springer, Berlin, Heidelberg, 2011).
-
(2011)
Lecture Notes in Computer Science
, vol.6577
, pp. 38-52
-
-
Donmez, N.1
Brudno, M.2
-
37
-
-
0035859921
-
An Eulerian path approach to DNA fragment assembly
-
DOI 10.1073/pnas.171285098
-
Pevzner, P.A., Tang, H. & Waterman, M.S. An Eulerian path approach to DNA fragment assembly. Proc. Natl. Acad. Sci. USA 98, 9748-9753 (2001). (Pubitemid 32769375)
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.17
, pp. 9748-9753
-
-
Pevzner, P.A.1
Tang, H.2
Waterman, M.S.3
-
38
-
-
0029312687
-
A new algorithm for DNA sequence assembly
-
Idury, R.M. & Waterman, M.S. A new algorithm for DNA sequence assembly. J. Comput. Biol. 2, 291-306 (1995).
-
(1995)
J. Comput. Biol.
, vol.2
, pp. 291-306
-
-
Idury, R.M.1
Waterman, M.S.2
-
39
-
-
66449136667
-
ABySS: A parallel assembler for short read sequence data
-
Simpson, J.T. et al. ABySS: a parallel assembler for short read sequence data. Genome Res. 19, 1117-1123 (2009).
-
(2009)
Genome Res.
, vol.19
, pp. 1117-1123
-
-
Simpson, J.T.1
-
40
-
-
77949511368
-
Pebble and rock band: Heuristic resolution of repeats and scaffolding in the velvet short-read de novo assembler
-
Zerbino, D.R., McEwen, G.K., Margulies, E.H. & Birney, E. Pebble and rock band: heuristic resolution of repeats and scaffolding in the velvet short-read de novo assembler. PLoS ONE 4, e8407 (2009).
-
(2009)
PLoS ONE
, vol.4
-
-
Zerbino, D.R.1
McEwen, G.K.2
Margulies, E.H.3
Birney, E.4
-
41
-
-
79251493015
-
A human genome structural variation sequencing resource reveals insights into mutational mechanisms
-
Kidd, J.M. et al. A human genome structural variation sequencing resource reveals insights into mutational mechanisms. Cell 143, 837-847 (2010).
-
(2010)
Cell
, vol.143
, pp. 837-847
-
-
Kidd, J.M.1
-
42
-
-
76749155072
-
Drive against hotspot motifs in primates implicates the PRDM9 gene in meiotic recombination
-
Myers, S. et al. Drive against hotspot motifs in primates implicates the PRDM9 gene in meiotic recombination. Science 327, 876-879 (2010).
-
(2010)
Science
, vol.327
, pp. 876-879
-
-
Myers, S.1
-
43
-
-
35348983887
-
A second generation human haplotype map of over 3.1 million SNPs
-
The International HapMap Consortium. et al.
-
The International HapMap Consortium. et al. A second generation human haplotype map of over 3.1 million SNPs. Nature 449, 851-861 (2007).
-
(2007)
Nature
, vol.449
, pp. 851-861
-
-
-
44
-
-
33749137515
-
A high-resolution HLA and SNP haplotype map for disease association studies in the extended human MHC
-
DOI 10.1038/ng1885, PII NG1885
-
de Bakker, P.I. et al. A high-resolution HLA and SNP haplotype map for disease association studies in the extended human MHC. Nat. Genet. 38, 1166-1172 (2006). (Pubitemid 44470362)
-
(2006)
Nature Genetics
, vol.38
, Issue.10
, pp. 1166-1172
-
-
De Bakker, P.I.W.1
McVean, G.2
Sabeti, P.C.3
Miretti, M.M.4
Green, T.5
Marchini, J.6
Ke, X.7
Monsuur, A.J.8
Whittaker, P.9
Delgado, M.10
Morrison, J.11
Richardson, A.12
Walsh, E.C.13
Gao, X.14
Galver, L.15
Hart, J.16
Hafler, D.A.17
Pericak-Vance, M.18
Todd, J.A.19
Daly, M.J.20
Trowsdale, J.21
Wijmenga, C.22
Vyse, T.J.23
Beck, S.24
Murray, S.S.25
Carrington, M.26
Gregory, S.27
Deloukas, P.28
Rioux, J.D.29
more..
-
45
-
-
77949442104
-
Calling SNPs without a reference sequence
-
Ratan, A., Yu, Z., Hayes, V.M., Schuster, S.C. & Miller, W. Calling SNPs without a reference sequence. BMC Bioinformatics 11, 130 (2010).
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 130
-
-
Ratan, A.1
Yu, Z.2
Hayes, V.M.3
Schuster, S.C.4
Miller, W.5
-
46
-
-
78449313673
-
Identifying SNPs without a reference genome by comparing raw reads
-
(eds. Chavez, E. & Lonardi, S.) (Los Cabos, Mexico
-
Peterlongo, P., Schnel, N., Pisanti, N., Sagot, M.-F. & Lacroix, V. Identifying SNPs without a reference genome by comparing raw reads. in String Processing and Information Retrieval-17th International Symposium (eds. Chavez, E. & Lonardi, S.) 147-158 (Los Cabos, Mexico, 2010).
-
(2010)
String Processing and Information Retrieval-17th International Symposium
, pp. 147-158
-
-
Peterlongo, P.1
Schnel, N.2
Pisanti, N.3
Sagot, M.-F.4
Lacroix, V.5
-
47
-
-
78650791604
-
Analysis of next-generation genomic data in cancer: Accomplishments and challenges
-
Ding, L., Wendl, M.C., Koboldt, D.C. & Mardis, E.R. Analysis of next-generation genomic data in cancer: accomplishments and challenges. Hum. Mol. Genet. 19, R188-R196 (2010).
-
(2010)
Hum. Mol. Genet.
, vol.19
-
-
Ding, L.1
Wendl, M.C.2
Koboldt, D.C.3
Mardis, E.R.4
-
48
-
-
75649084906
-
Evolution of MRSA during hospital transmission and intercontinental spread
-
Harris, S.R. et al. Evolution of MRSA during hospital transmission and intercontinental spread. Science 327, 469-474 (2010).
-
(2010)
Science
, vol.327
, pp. 469-474
-
-
Harris, S.R.1
-
49
-
-
43149086380
-
ALLPATHS: De novo assembly of whole-genome shotgun microreads
-
DOI 10.1101/gr.7337908
-
Butler, J. et al. ALLPATHS: de novo assembly of whole-genome shotgun microreads. Genome Res. 18, 810-820 (2008). (Pubitemid 351645071)
-
(2008)
Genome Research
, vol.18
, Issue.5
, pp. 810-820
-
-
Butler, J.1
MacCallum, I.2
Kleber, M.3
Shlyakhter, I.A.4
Belmonte, M.K.5
Lander, E.S.6
Nusbaum, C.7
Jaffe, D.B.8
-
50
-
-
59949093527
-
De novo fragment assembly with short mate-paired reads: Does the read length matter?
-
Chaisson, M.J., Brinza, D. & Pevzner, P.A. De novo fragment assembly with short mate-paired reads: does the read length matter? Genome Res. 19, 336-346 (2009).
-
(2009)
Genome Res.
, vol.19
, pp. 336-346
-
-
Chaisson, M.J.1
Brinza, D.2
Pevzner, P.A.3
-
51
-
-
78649358717
-
Quake: Quality-aware detection and correction of sequencing errors
-
Kelley, D.R., Schatz, M.C. & Salzberg, S.L. Quake: quality-aware detection and correction of sequencing errors. Genome Biol. 11, R116 (2010).
-
(2010)
Genome Biol.
, vol.11
-
-
Kelley, D.R.1
Schatz, M.C.2
Salzberg, S.L.3
-
52
-
-
0026059595
-
Sequence analysis of HLA-Bw53, a common West African allele, suggests an origin by gene conversion of HLA-B35
-
Allsopp, C.E. et al. Sequence analysis of HLA-Bw53, a common West African allele, suggests an origin by gene conversion of HLA-B35. Hum. Immunol. 30, 105-109 (1991).
-
(1991)
Hum. Immunol.
, vol.30
, pp. 105-109
-
-
Allsopp, C.E.1
|