The birds of Genome10K

GigaScience

Volumn 3, Issue 1, 2014, Pages

  OBrien, Stephen J ^a,b   Haussler, David ^c   Ryder, Oliver ^d  

^a ST PETERSBURG STATE UNIVERSITY   (Russian Federation)

^b NOVA SOUTHEASTERN UNIVERSITY   (United States)

^c University of California   (United States)

^d INSTITUTE FOR CONSERVATION RESEARCH   (United States)

Author keywords

Aves; Avian; Avian phylogenomics project; Birds; Genome10K; Genomics; Phylogenomics; Vertebrate

Indexed keywords

CONTIG; DNA;

AVIAN GENETICS; CHROMOSOME; DNA TRANSFER; GENE SEQUENCE; GENETIC VARIABILITY; GENOME 10K PROJECT; GENOME ANALYSIS; GENOMICS; NONHUMAN; NOTE; PHYLOGENY; PRIORITY JOURNAL; SPECIES DIFFERENCE; TRANSPOSON;

EID: 84942234039     PISSN: None     EISSN: 2047217X     Source Type: Journal    
DOI: 10.1186/2047-217X-3-32     Document Type: Note

References (11)

1. Jarvis ED, Siavash M, Aberer AJ, Li B, Houde P, Li C, Ho SYW, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Li J, Zhang F, Li H, Zhou L, Narula N, Liu L, Ganapathy G, Boussau B, Bayzid S, Zavidovych V, Subramanian S, Gabaldón T, Capella-Gutiérrez S, Huerta-Cepas J, Rekepalli B, Munch K, Schierup M, et al. Whole genome analyses resolve the early branches in the tree of life of modern birds. Science 2014, 346. doi:10.1126/science.1253451.
2. Zhang G, Li C, Li Q, Li B, Larkin DM, Lee C, Storz JF, Antunes A, Meredith RW, Ödeen A, Cui J, Zhou Q, Xu L, Pan H, Wang Z, Jin L, Zhang P, Hu H, Yang W, Hu J, Xiao J, Yang Z, Liu Y, Xie Q, Lian J, Wen P, Zhang F, Li H, Zeng Y, Xiong Z, et al. Comparative genomics across modern bird species reveal insights into panavian genome evolution and trait biodiversity. Science 2014, 346. doi:10.1126/science.1251385.
3. Schulte P, Alegret L, Arenillas I, Arz JA, Barton PJ, Bown PR, Bralower TJ, Christeson GL, Claeys P, Cockell CS, Collins GS, Deutsch A, Goldin TJ, Goto K, Grajales-Nishimura JM, Grieve RA, Gulick SP, Johnson KR, Kiessling W, Koeberl C, Kring DA, MacLeod KG, Matsui T, Melosh J, Montanari A, Morgan JV, Neal CR, Nichols DJ, Norris RD, Pierazzo E, et al. The chicxulub asteroid impact and mass extinction at the cretaceous-paleogene boundary. Science 2010, 327:1214-1218. published online Epub Mar (doi:10.1126/science.1177265), 10.1126/science.1177265, 20203042.
4. Feduccia A. Big bang' for tertiary birds?. Trends Ecol Evol 2003, 18:172-176.
5. International Chicken Genome Sequencing Consortium Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 2004, 432:695-716. 10.1038/nature03154, 15592404, International Chicken Genome Sequencing Consortium.
6. Dalloul RA, Long JA, Zimin AV, Aslam L, Beal K, Blomberg LA, Bouffard P, Burt DW, Crasta O, Crooijmans RPMA, Cooper K, Coulombe RA, De S, Delany ME, Dodgson JB, Dong JJ, Evans C, Frederickson KM, Flicek P, Florea L, Folkerts O, Groenen MAM, Harkins TT, Herrero J, Hoffmann S, Megens H-J, Jiang A, de Jong P, Kaiser P, Kim H, et al. Multi-platform next-generation sequencing of the domestic turkey (meleagris gallopavo): genome assembly and analysis. PLoS Biol 2010, 8:e1000475. 10.1371/journal.pbio.1000475, 2935454, 20838655.
7. Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Künstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TAF, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Lin Y-C, George J, Sweedler J, Southey B, Gunaratne P, Watson M, et al. The genome of a songbird. Nature 2010, 464:757-762. 10.1038/nature08819, 3187626, 20360741.
8. Genome 10K Community of Scientists Genome 10K: a proposal to obtain whole-genome sequence for 10,000 vertebrate species. J Hered 2009, 100:659-674. 2877544, 19892720, Genome 10K Community of Scientists.
9. Hackett SJ, Kimball RT, Reddy S, Bowie RC, Braun EL, Braun MJ, Chojnowski JL, Cox WA, Han KL, Harshman J, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, Sheldon FH, Steadman DW, Witt CC, Yuri T. A phylogenomic study of birds reveals their evolutionary history. Science 2008, 320:1763-1768. 10.1126/science.1157704, 18583609.
10. Hayden EC. The $1,000 genome. Nature 2014, 50:294-295.
11. Zhang G, Li B, Li C, Gilbert MTP, Jarvis ED, Wang J. Comparative genomic data of avian phylogenomics project. GigaScience 2014, 3:26.