Comparing a few SNP calling algorithms using low-coverage sequencing data

BMC Bioinformatics

Volumn 14, Issue 1, 2013, Pages

  Yu, Xiaoqing ^a   Sun, Shuying ^a,b  

^a CASE WESTERN RESERVE UNIVERSITY   (United States)

^b TEXAS STATE UNIVERSITY   (United States)

Author keywords

Atlas SNP2; GATK; Low coverage; Next generation sequencing; SAMtools; Single sample; SNP calling; SOAPsnp

Indexed keywords

ATLAS-SNP2; GATK; LOW-COVERAGE; NEXT-GENERATION SEQUENCING; SAMTOOLS; SINGLE-SAMPLE; SNP CALLING; SOAPSNP;

NUCLEOTIDES;

ALGORITHMS;

ALGORITHM; ARTICLE; BIOLOGY; GENETIC DATABASE; GENETICS; HIGH THROUGHPUT SEQUENCING; HUMAN; METHODOLOGY; SINGLE NUCLEOTIDE POLYMORPHISM;

ALGORITHMS; COMPUTATIONAL BIOLOGY; DATABASES, GENETIC; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HUMANS; POLYMORPHISM, SINGLE NUCLEOTIDE;

EID: 84883851164     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-14-274     Document Type: Article

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