-
1
-
-
0033962272
-
A phylogenetic analysis reveals an unusual sequence conservation within introns involved in RNA editing
-
Aruscavage, P.J. and Bass, B.L. 2000. A phylogenetic analysis reveals an unusual sequence conservation within introns involved in RNA editing. RNA 6: 257-269.
-
(2000)
RNA
, vol.6
, pp. 257-269
-
-
Aruscavage, P.J.1
Bass, B.L.2
-
2
-
-
0034069495
-
Gene ontology: Tool for the unification of biology
-
Ashburner, M., Ball, C.A., Blake, J.A., Botstein, D., Butler, H., Cherry, J.M., Davis, A.P., Dolinski, K., Dwight, S.S., Eppig, J.T., et al. 2000. Gene ontology: Tool for the unification of biology. Nat. Genet. 25: 25-29.
-
(2000)
Nat. Genet.
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
-
3
-
-
14044256286
-
Into the heart of darkness: Large-scale clustering of human non-coding DNA
-
Bejerano, G., Haussler, D., and Blanchette, M. 2004a. Into the heart of darkness: Large-scale clustering of human non-coding DNA. Bioinformatics 20: I40-I48.
-
(2004)
Bioinformatics
, vol.20
-
-
Bejerano, G.1
Haussler, D.2
Blanchette, M.3
-
4
-
-
2542542256
-
Ultraconserved elements in the human genome
-
Bejerano, G., Pheasant, M., Makunin, I., Stephen, S., Kent, W., Mattick, J., and Haussler, D. 2004b. Ultraconserved elements in the human genome. Science 304: 1321-1325.
-
(2004)
Science
, vol.304
, pp. 1321-1325
-
-
Bejerano, G.1
Pheasant, M.2
Makunin, I.3
Stephen, S.4
Kent, W.5
Mattick, J.6
Haussler, D.7
-
5
-
-
0034883255
-
Analysis of conserved noncoding DNA in Drosophila reveals similar constraints in intergenic and intronic sequences
-
Bergman, C.M. and Kreitman, M. 2001. Analysis of conserved noncoding DNA in Drosophila reveals similar constraints in intergenic and intronic sequences. Genome Res. 11: 1335-1345.
-
(2001)
Genome Res.
, vol.11
, pp. 1335-1345
-
-
Bergman, C.M.1
Kreitman, M.2
-
6
-
-
0012301705
-
Assessing the impact of comparative genomic sequence data on the functional annotation of the Drosophila genome
-
research0086
-
Bergman, C.M., Pfeiffer, B.D., Rincon-Limas, D.E., Hoskins, R.A., Gnirke, A., Mungall, C.J., Wang, A.M., Kronmiller, B., Pacleb, J., Park, S., et al. 2002. Assessing the impact of comparative genomic sequence data on the functional annotation of the Drosophila genome. Genome Biol. 3: research0086.
-
(2002)
Genome Biol.
, vol.3
-
-
Bergman, C.M.1
Pfeiffer, B.D.2
Rincon-Limas, D.E.3
Hoskins, R.A.4
Gnirke, A.5
Mungall, C.J.6
Wang, A.M.7
Kronmiller, B.8
Pacleb, J.9
Park, S.10
-
7
-
-
0013394889
-
Mechanisms of alternative pre-messenger RNA splicing
-
Black, D.L. 2003. Mechanisms of alternative pre-messenger RNA splicing. Annu. Rev. Biochem. 72: 291-336.
-
(2003)
Annu. Rev. Biochem.
, vol.72
, pp. 291-336
-
-
Black, D.L.1
-
8
-
-
1542748076
-
Aligning multiple genomic sequences with the threaded blockset aligner
-
Blanchette, M., Kent, W.J., Riemer, C., Elnitski, L., Smit, A.F.A., Roskin, K.M., Baertsch, R., Rosenbloom, K., Clawson, H., Green, E.D., et al. 2004. Aligning multiple genomic sequences with the threaded blockset aligner. Genome Res. 14: 708-715.
-
(2004)
Genome Res.
, vol.14
, pp. 708-715
-
-
Blanchette, M.1
Kent, W.J.2
Riemer, C.3
Elnitski, L.4
Smit, A.F.A.5
Roskin, K.M.6
Baertsch, R.7
Rosenbloom, K.8
Clawson, H.9
Green, E.D.10
-
9
-
-
0242418246
-
Phylogenetic shadowing of primate sequences to find functional regions of the human genome
-
Boffelli, D., McAuliffe, J., Ovcharenko, D., Lewis, K.D., Ovcharenko, I., Pachter, L., and Rubin, E.M. 2003. Phylogenetic shadowing of primate sequences to find functional regions of the human genome. Science 299: 1391-1394.
-
(2003)
Science
, vol.299
, pp. 1391-1394
-
-
Boffelli, D.1
McAuliffe, J.2
Ovcharenko, D.3
Lewis, K.D.4
Ovcharenko, I.5
Pachter, L.6
Rubin, E.M.7
-
10
-
-
1842667852
-
MAVID: Constrained ancestral alignment of multiple sequences
-
Bray, N. and Pachter, L. 2004. MAVID: Constrained ancestral alignment of multiple sequences. Genome Res. 14: 693-699.
-
(2004)
Genome Res.
, vol.14
, pp. 693-699
-
-
Bray, N.1
Pachter, L.2
-
11
-
-
0031593249
-
Mobile elements inserted in the distant past have taken on important functions
-
Britten, R.J. 1997. Mobile elements inserted in the distant past have taken on important functions. Gene 205: 177-182.
-
(1997)
Gene
, vol.205
, pp. 177-182
-
-
Britten, R.J.1
-
12
-
-
0037398368
-
LAGAN and Multi-LAGAN: Efficient tools for large-scale multiple alignment of genomic DNA
-
Brudno, M., Do, C., Cooper, G., Kim, M.F., Davydov, E., Green, E.D., Sidow, A., and Batzoglou, S. 2003. LAGAN and Multi-LAGAN: Efficient tools for large-scale multiple alignment of genomic DNA. Genome Res. 13: 721-731.
-
(2003)
Genome Res.
, vol.13
, pp. 721-731
-
-
Brudno, M.1
Do, C.2
Cooper, G.3
Kim, M.F.4
Davydov, E.5
Green, E.D.6
Sidow, A.7
Batzoglou, S.8
-
13
-
-
1242296821
-
Analysis of multiple genomic sequence alignments: A web resource, online tools, and lessons learned from analysis of mammalian SCL loci
-
Chapman, M.A., Donaldson, I.J., Gilbert, J., Grafham, D., Rogers, J., Green, A.R., and Gottgens, B. 2004. Analysis of multiple genomic sequence alignments: A web resource, online tools, and lessons learned from analysis of mammalian SCL loci. Genome Res. 14: 313-318.
-
(2004)
Genome Res.
, vol.14
, pp. 313-318
-
-
Chapman, M.A.1
Donaldson, I.J.2
Gilbert, J.3
Grafham, D.4
Rogers, J.5
Green, A.R.6
Gottgens, B.7
-
14
-
-
21044431735
-
Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution
-
Cheng, J., Kapranov, P., Drenkow, J., Dike, S., Brubaker, S., Patel, S., Long, J., Stern, D., Tammana, H., Helt, G., et al. 2005. Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution. Science 308: 1149-1154.
-
(2005)
Science
, vol.308
, pp. 1149-1154
-
-
Cheng, J.1
Kapranov, P.2
Drenkow, J.3
Dike, S.4
Brubaker, S.5
Patel, S.6
Long, J.7
Stern, D.8
Tammana, H.9
Helt, G.10
-
15
-
-
2442555497
-
The share of human genomic DNA under selection estimated from human-mouse genomic alignments
-
Chiaromonte, F., Weber, R.J., Roskin, K.M., Diekhans, M., Kent, W.J., and Haussler, D. 2003. The share of human genomic DNA under selection estimated from human-mouse genomic alignments. Cold Spring Harbor Symp. Quant. Biol. 68: 245-254.
-
(2003)
Cold Spring Harbor Symp. Quant. Biol.
, vol.68
, pp. 245-254
-
-
Chiaromonte, F.1
Weber, R.J.2
Roskin, K.M.3
Diekhans, M.4
Kent, W.J.5
Haussler, D.6
-
16
-
-
9144256665
-
Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms
-
Christie, K.R., Weng, S., Balakrishnan, R., Costanzo, M.C., Dolinski, K., Dwight, S.S., Engel, S.R., Feierbach, B., Fisk, D.G., Hirschman, J.E., et al. 2004. Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms. Nucleic Acids Res. 32: D311-D314.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Christie, K.R.1
Weng, S.2
Balakrishnan, R.3
Costanzo, M.C.4
Dolinski, K.5
Dwight, S.S.6
Engel, S.R.7
Feierbach, B.8
Fisk, D.G.9
Hirschman, J.E.10
-
17
-
-
0034891211
-
The search for meaning in noncoding DNA
-
Clark, A.G. 2001. The search for meaning in noncoding DNA. Genome Res. 11: 1319-1320.
-
(2001)
Genome Res.
, vol.11
, pp. 1319-1320
-
-
Clark, A.G.1
-
18
-
-
1842667855
-
Characterization of evolutionary rates and constraints in three mammalian genomes
-
Cooper, G.M., Brudno, M., Stone, E.A., Dubchak, I., Batzoglou, S., and Sidow, A. 2004. Characterization of evolutionary rates and constraints in three mammalian genomes. Genome Res. 14: 539-548.
-
(2004)
Genome Res.
, vol.14
, pp. 539-548
-
-
Cooper, G.M.1
Brudno, M.2
Stone, E.A.3
Dubchak, I.4
Batzoglou, S.5
Sidow, A.6
-
19
-
-
15544380198
-
Naturally occurring antisense: Transcriptional leakage or real overlap?
-
Dahary, D., Elroy-Stein, O., and Sorek, R. 2005. Naturally occurring antisense: Transcriptional leakage or real overlap? Genome Res. 15: 364-368.
-
(2005)
Genome Res.
, vol.15
, pp. 364-368
-
-
Dahary, D.1
Elroy-Stein, O.2
Sorek, R.3
-
20
-
-
18744395183
-
Numerous potentially functional but non-genic conserved sequences on human chromosome 21
-
Dermitzakis, E.T., Reymond, A., Lyle, R., Scamuffa, N., Ucla, C., Deutsch, S., Stevenson, B.J., Flegel, V., Bucher, P., Jongeneel, C.V., et al. 2002. Numerous potentially functional but non-genic conserved sequences on human chromosome 21. Nature 420: 578-582.
-
(2002)
Nature
, vol.420
, pp. 578-582
-
-
Dermitzakis, E.T.1
Reymond, A.2
Lyle, R.3
Scamuffa, N.4
Ucla, C.5
Deutsch, S.6
Stevenson, B.J.7
Flegel, V.8
Bucher, P.9
Jongeneel, C.V.10
-
21
-
-
0003516147
-
-
Cambridge University Press, UK
-
Durbin, R., Eddy, S., Krogh, A., and Mitchison, G. 1998. Biological sequence analysis: Probabilistic models of proteins and nucleic acids. Cambridge University Press, UK.
-
(1998)
Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids
-
-
Durbin, R.1
Eddy, S.2
Krogh, A.3
Mitchison, G.4
-
22
-
-
0027280998
-
Strong conservation of non-coding sequences during vertebrates evolution: Potential involvement in post-transcriptional regulation of gene expression
-
Duret, L., Dorkeld, F., and Gautier, C. 1993. Strong conservation of non-coding sequences during vertebrates evolution: Potential involvement in post-transcriptional regulation of gene expression. Nucleic Acids Res. 21: 2315-2322.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 2315-2322
-
-
Duret, L.1
Dorkeld, F.2
Gautier, C.3
-
23
-
-
0345447463
-
Mutation rate variation in the mammalian genome
-
Ellegren, H., Smith, N.G.C., and Webster, M.T. 2003. Mutation rate variation in the mammalian genome. Curr. Opin. Genet. Dev. 13: 562-568.
-
(2003)
Curr. Opin. Genet. Dev.
, vol.13
, pp. 562-568
-
-
Ellegren, H.1
Smith, N.G.C.2
Webster, M.T.3
-
24
-
-
13444305246
-
Improvements to GALA and dbERGE II: Databases featuring genomic sequence alignment, annotation and experimental results
-
Elnitski, L., Giardine, B., Shah, P., Zhang, Y., Riemer, C., Weirauch, M., Burhans, R., Miller, W., and Hardison, R.C. 2005. Improvements to GALA and dbERGE II: Databases featuring genomic sequence alignment, annotation and experimental results. Nucleic Acids Res. 33: D466-D470.
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Elnitski, L.1
Giardine, B.2
Shah, P.3
Zhang, Y.4
Riemer, C.5
Weirauch, M.6
Burhans, R.7
Miller, W.8
Hardison, R.C.9
-
25
-
-
7444260846
-
The ENCODE (ENCyclopedia of DNA Elements) Project
-
ENCODE Project Consortium. 2004. The ENCODE (ENCyclopedia Of DNA Elements) Project. Science 306: 636-640.
-
(2004)
Science
, vol.306
, pp. 636-640
-
-
-
26
-
-
0842321501
-
MicroRNA targets in Drosophila
-
Enright, A.J., John, B., Gaul, U., Tuschl, T., Sander, C., and Marks, D.S. 2003. MicroRNA targets in Drosophila. Genome Biol. 5: R1.
-
(2003)
Genome Biol.
, vol.5
-
-
Enright, A.J.1
John, B.2
Gaul, U.3
Tuschl, T.4
Sander, C.5
Marks, D.S.6
-
27
-
-
0030034795
-
A hidden Markov model approach to variation among sites in rate of evolution
-
Felsenstein, J. and Churchill, G.A. 1996. A hidden Markov model approach to variation among sites in rate of evolution. Mol. Biol. Evol. 13: 93-104.
-
(1996)
Mol. Biol. Evol.
, vol.13
, pp. 93-104
-
-
Felsenstein, J.1
Churchill, G.A.2
-
28
-
-
0037249406
-
The FlyBase database of the Drosophila genome projects and community literature
-
FlyBase Consortium. 2003. The FlyBase database of the Drosophila genome projects and community literature. Nucleic Acids Res. 31: 172-175.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 172-175
-
-
-
29
-
-
0034762015
-
Evolutionarily conserved sequences on human chromosome 21
-
Frazer, K.A., Sheehan, J.B., Stokowski, R.P., Chen, X., Hosseini, R., Cheng, J.-F., Fodor, S.P.A., Cox, D.R., and Patil, N. 2001. Evolutionarily conserved sequences on human chromosome 21. Genome Res. 11: 1651-1659.
-
(2001)
Genome Res.
, vol.11
, pp. 1651-1659
-
-
Frazer, K.A.1
Sheehan, J.B.2
Stokowski, R.P.3
Chen, X.4
Hosseini, R.5
Cheng, J.-F.6
Fodor, S.P.A.7
Cox, D.R.8
Patil, N.9
-
30
-
-
1542347048
-
Noncoding sequences conserved in a limited number of mammals in the SIM2 interval are frequently functional
-
Frazer, K.A., Tao, H., Osoegawa, K., de Jong, P.J., Chen, X., Doherty, M.F., and Cox, D.R. 2004. Noncoding sequences conserved in a limited number of mammals in the SIM2 interval are frequently functional. Genome Res. 14: 367-372.
-
(2004)
Genome Res.
, vol.14
, pp. 367-372
-
-
Frazer, K.A.1
Tao, H.2
Osoegawa, K.3
De Jong, P.J.4
Chen, X.5
Doherty, M.F.6
Cox, D.R.7
-
31
-
-
22344454794
-
Ultraconserved elements in insect genomes: A highly conserved intronic sequence implicated in the control of homothorax mRNA splicing
-
Glazov, E.A., Pheasant, M., McGraw, E.A., Bejerano, G., and Mattick, J.S. 2005. Ultraconserved elements in insect genomes: A highly conserved intronic sequence implicated in the control of homothorax mRNA splicing. Genome Res. 15: 800-808.
-
(2005)
Genome Res.
, vol.15
, pp. 800-808
-
-
Glazov, E.A.1
Pheasant, M.2
McGraw, E.A.3
Bejerano, G.4
Mattick, J.S.5
-
32
-
-
0037252684
-
Rfam: An RNA family database
-
Griffiths-Jones, S., Bateman, A., Marshall, M., Khanna, A., and Eddy, S.R. 2003. Rfam: An RNA family database. Nucleic Acids Res. 31: 439-441.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 439-441
-
-
Griffiths-Jones, S.1
Bateman, A.2
Marshall, M.3
Khanna, A.4
Eddy, S.R.5
-
33
-
-
0035955320
-
Regulatory functions of 3′ UTRs
-
Grzybowska, E.A., Wilczynska, A., and Siedlecki, J.A. 2001. Regulatory functions of 3′ UTRs. Biochem. Biophys. Res. Co. 288: 291-295.
-
(2001)
Biochem. Biophys. Res. Co.
, vol.288
, pp. 291-295
-
-
Grzybowska, E.A.1
Wilczynska, A.2
Siedlecki, J.A.3
-
34
-
-
0030722935
-
Long human-mouse sequence alignments reveal novel regulatory elements: Reasons to sequence the mouse genome
-
Hardison, R.C., Oeltjen, J., and Miller, W. 1997. Long human-mouse sequence alignments reveal novel regulatory elements: Reasons to sequence the mouse genome. Genome Res. 7: 959-966.
-
(1997)
Genome Res.
, vol.7
, pp. 959-966
-
-
Hardison, R.C.1
Oeltjen, J.2
Miller, W.3
-
35
-
-
18544404720
-
Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution
-
Hardison, R.C., Roskin, K.M., Yang, S., Diekhans, M., Kent, W.J., Weber, R., Elnitski, L., Li, J., O'Connor, M., Kolbe, D., et al. 2003. Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution. Genome Res. 13: 13-26.
-
(2003)
Genome Res.
, vol.13
, pp. 13-26
-
-
Hardison, R.C.1
Roskin, K.M.2
Yang, S.3
Diekhans, M.4
Kent, W.J.5
Weber, R.6
Elnitski, L.7
Li, J.8
O'Connor, M.9
Kolbe, D.10
-
36
-
-
0346494826
-
WormBase: A multi-species resource for nematode biology and genomics
-
Harris, T.W., Chen, N., Cunningham, F., Tello-Ruiz, M., and Antoshechkin, I. 2004. WormBase: A multi-species resource for nematode biology and genomics. Nucleic Acids Res. 32: D411-D417.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Harris, T.W.1
Chen, N.2
Cunningham, F.3
Tello-Ruiz, M.4
Antoshechkin, I.5
-
37
-
-
20244378058
-
Generation and annotation of the DNA sequences of human chromosomes 2 and 4
-
Hillier, L.W., Graves, T.A., Fulton, R.S., Fulton, L.A., Pepin, K.H., Minx, P., Wagner-McPherson, C., Layman, D., Wylie, K., Sekhon, M., et al. 2005. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. Nature 434: 724-731.
-
(2005)
Nature
, vol.434
, pp. 724-731
-
-
Hillier, L.W.1
Graves, T.A.2
Fulton, R.S.3
Fulton, L.A.4
Pepin, K.H.5
Minx, P.6
Wagner-McPherson, C.7
Layman, D.8
Wylie, K.9
Sekhon, M.10
-
38
-
-
0042528670
-
Nervous system targets of RNA editing identified by comparative genomics
-
Hoopengardner, B., Bhalla, T., Staber, C., and Reenan, R. 2003. Nervous system targets of RNA editing identified by comparative genomics. Science 301: 832-836.
-
(2003)
Science
, vol.301
, pp. 832-836
-
-
Hoopengardner, B.1
Bhalla, T.2
Staber, C.3
Reenan, R.4
-
39
-
-
4644300141
-
Bayesian Markov chain Monte Carlo sequence analysis reveals varying neutral substitution patterns in mammalian evolution
-
Hwang, D. and Green, P. 2004. Bayesian Markov chain Monte Carlo sequence analysis reveals varying neutral substitution patterns in mammalian evolution. Proc. Natl. Acad. Sci. 101: 13994-14001.
-
(2004)
Proc. Natl. Acad. Sci.
, vol.101
, pp. 13994-14001
-
-
Hwang, D.1
Green, P.2
-
40
-
-
10644283823
-
Sequencing and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
-
International Chicken Genome Sequencing Consortium. 2004. Sequencing and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 432: 695-716.
-
(2004)
Nature
, vol.432
, pp. 695-716
-
-
-
41
-
-
14044251458
-
Human microRNA targets
-
John, B., Enright, A.J., Aravin, A., Tuschl, T., Sander, C., and Marks, D.S. 2004. Human microRNA targets. PLoS Biol. 2: e363.
-
(2004)
PLoS Biol.
, vol.2
-
-
John, B.1
Enright, A.J.2
Aravin, A.3
Tuschl, T.4
Sander, C.5
Marks, D.S.6
-
42
-
-
0033621541
-
Cuticle collagen genes: Expression in Caenorhabditis elegans
-
Johnstone, I.L., 2000. Cuticle collagen genes: Expression in Caenorhabditis elegans. Trends Genet. 16: 21-27.
-
(2000)
Trends Genet.
, vol.16
, pp. 21-27
-
-
Johnstone, I.L.1
-
43
-
-
0037301560
-
Origin of a substantial fraction of human regulatory sequences from transposable elements
-
Jordan, I.K., Rogozin, I.B., Glazko, G.V., and Koonin, E.V. 2003. Origin of a substantial fraction of human regulatory sequences from transposable elements. Trends Genet. 19: 68-72.
-
(2003)
Trends Genet.
, vol.19
, pp. 68-72
-
-
Jordan, I.K.1
Rogozin, I.B.2
Glazko, G.V.3
Koonin, E.V.4
-
44
-
-
0037250168
-
The UCSC Genome Browser Database
-
Karolchik, D., Baertsch, R., Diekhans, M., Furey, T.S., Hinrichs, A., Lu, Y.T., Roskin, K.M., Schwartz, M., Sugnet, C.W., Thomas, D.J., et al. 2003. The UCSC Genome Browser Database. Nucleic Acids Res. 31: 51-54.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 51-54
-
-
Karolchik, D.1
Baertsch, R.2
Diekhans, M.3
Furey, T.S.4
Hinrichs, A.5
Lu, Y.T.6
Roskin, K.M.7
Schwartz, M.8
Sugnet, C.W.9
Thomas, D.J.10
-
45
-
-
0038349948
-
Sequencing and comparison of yeast species to identify genes and regulatory elements
-
Kellis, M., Patterson, N., Endrizzi, M., Birren, B., and Lander, E.S. 2003. Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423: 241-254.
-
(2003)
Nature
, vol.423
, pp. 241-254
-
-
Kellis, M.1
Patterson, N.2
Endrizzi, M.3
Birren, B.4
Lander, E.S.5
-
46
-
-
0036226603
-
BLAT: The BLAST-like alignment tool
-
Kent, W.J., 2002. BLAT: The BLAST-like alignment tool. Genome Res. 12: 656-664.
-
(2002)
Genome Res.
, vol.12
, pp. 656-664
-
-
Kent, W.J.1
-
47
-
-
0141815478
-
Evolution's cauldron: Duplication, deletion, and rearrangement in the mouse and human genomes
-
Kent, W.J., Baertsch, R., Hinrichs, A., Miller, W., and Haussler, D. 2003. Evolution's cauldron: Duplication, deletion, and rearrangement in the mouse and human genomes. Proc. Natl. Acad. Sci. 100: 11484-11489.
-
(2003)
Proc. Natl. Acad. Sci.
, vol.100
, pp. 11484-11489
-
-
Kent, W.J.1
Baertsch, R.2
Hinrichs, A.3
Miller, W.4
Haussler, D.5
-
48
-
-
9144268889
-
Characterization of the pufferfish Otx2 cis-regulators reveals evolutionarily conserved genetic mechanisms for vertebrate head specification
-
Kimura-Yoshida, C., Kitajima, K., Oda-Ishii, I., Tian, E., Suzuki, M., Yamamoto, M., Suzuki, T., Kobayashi, M., Aizawa, S., and Matsuo, I., et al. 2004. Characterization of the pufferfish Otx2 cis-regulators reveals evolutionarily conserved genetic mechanisms for vertebrate head specification. Development 131: 57-71.
-
(2004)
Development
, vol.131
, pp. 57-71
-
-
Kimura-Yoshida, C.1
Kitajima, K.2
Oda-Ishii, I.3
Tian, E.4
Suzuki, M.5
Yamamoto, M.6
Suzuki, T.7
Kobayashi, M.8
Aizawa, S.9
Matsuo, I.10
-
49
-
-
23744493161
-
Evaluation of regulatory potential and conservation scores for detecting cis-regulatory modules in aligned mammalian genome sequences
-
King, D.C., Taylor, J., Elnitski, L., Chiaromonte, F., Miller, W., and Hardison, R.C. 2005. Evaluation of regulatory potential and conservation scores for detecting cis-regulatory modules in aligned mammalian genome sequences. Genome Res. (this issue).
-
(2005)
Genome Res.
, Issue.THIS ISSUE
-
-
King, D.C.1
Taylor, J.2
Elnitski, L.3
Chiaromonte, F.4
Miller, W.5
Hardison, R.C.6
-
50
-
-
0032796501
-
RNA secondary structure prediction using stochastic context-free grammars and evolutionary history
-
Knudsen, B. and Hein, J., 1999. RNA secondary structure prediction using stochastic context-free grammars and evolutionary history. Bioinformatics 15: 446-454.
-
(1999)
Bioinformatics
, vol.15
, pp. 446-454
-
-
Knudsen, B.1
Hein, J.2
-
51
-
-
20944450160
-
Combinatorial microRNA target predictions
-
Krek, A., Grun, D., Poy, M., Wolf, R., Rosenberg, L., Epstein, E., Macmenamin, P., da Piedade, I., Gunsalus, K., Stoffel, M., et al. 2005. Combinatorial microRNA target predictions. Nat. Genet. 37: 495-500.
-
(2005)
Nat. Genet.
, vol.37
, pp. 495-500
-
-
Krek, A.1
Grun, D.2
Poy, M.3
Wolf, R.4
Rosenberg, L.5
Epstein, E.6
Macmenamin, P.7
Da Piedade, I.8
Gunsalus, K.9
Stoffel, M.10
-
52
-
-
0442307970
-
In search of antisense
-
Lavorgna, G., Dahary, D., Lehner, B., Sorek, R., Sanderson, C.M., and Casari, G. 2004. In search of antisense. Trends Biochem. Sci. 29: 88-94.
-
(2004)
Trends Biochem. Sci.
, vol.29
, pp. 88-94
-
-
Lavorgna, G.1
Dahary, D.2
Lehner, B.3
Sorek, R.4
Sanderson, C.M.5
Casari, G.6
-
53
-
-
11844278458
-
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
-
Lewis, B.P., Burge, C.B., and Bartel, D.P. 2005. Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 120: 15-20.
-
(2005)
Cell
, vol.120
, pp. 15-20
-
-
Lewis, B.P.1
Burge, C.B.2
Bartel, D.P.3
-
54
-
-
0030748996
-
Making (anti)sense of non-coding sequence conservation
-
Lipman, D.J. 1997. Making (anti)sense of non-coding sequence conservation. Nucleic Acids Res. 25: 3580-3583.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3580-3583
-
-
Lipman, D.J.1
-
55
-
-
0034616398
-
Identification of a coordinate regulator of interleukins 4, 13, and 5 by cross-species sequence comparisons
-
Loots, G.G., Locksley, R.M., Blankespoor, C.M., Wang, Z.E., Miller, W., Rubin, E.M., and Frazer, K.A. 2000. Identification of a coordinate regulator of interleukins 4, 13, and 5 by cross-species sequence comparisons. Science 288: 136-140.
-
(2000)
Science
, vol.288
, pp. 136-140
-
-
Loots, G.G.1
Locksley, R.M.2
Blankespoor, C.M.3
Wang, Z.E.4
Miller, W.5
Rubin, E.M.6
Frazer, K.A.7
-
56
-
-
10744222156
-
Identification and characterization of multi-species conserved sequences
-
Margulies, E.H., Blanchette, M., NISC Comparative Sequencing Program, Haussler, D., and Green, E.D. 2003. Identification and characterization of multi-species conserved sequences. Genome Res. 13: 2507-2518.
-
(2003)
Genome Res.
, vol.13
, pp. 2507-2518
-
-
Margulies, E.H.1
Blanchette, M.2
Haussler, D.3
Green, E.D.4
-
57
-
-
0034518158
-
VISTA: Visualizing global DNA sequence alignments of arbitrary length
-
Mayor, C., Brudno, M., Schwartz, J.R., Poliakov, A., Rubin, E.M., Frazer, K.A., Pachter, L., and Dubchak, I. 2000. VISTA: Visualizing global DNA sequence alignments of arbitrary length. Bioinformatics 16: 1046-1047.
-
(2000)
Bioinformatics
, vol.16
, pp. 1046-1047
-
-
Mayor, C.1
Brudno, M.2
Schwartz, J.R.3
Poliakov, A.4
Rubin, E.M.5
Frazer, K.A.6
Pachter, L.7
Dubchak, I.8
-
58
-
-
0036207282
-
Untranslated regions of mRNAs
-
reviews0004.1-0004.10
-
Mignone, F., Gissi, C., Liuni, S., and Pesole, G. 2002. Untranslated regions of mRNAs. Genome Biol. 3: reviews0004.1-0004.10.
-
(2002)
Genome Biol.
, vol.3
-
-
Mignone, F.1
Gissi, C.2
Liuni, S.3
Pesole, G.4
-
59
-
-
1542563409
-
Initial sequencing and comparative analysis of the mouse genome
-
Mouse Genome Sequencing Consortium. 2002. Initial sequencing and comparative analysis of the mouse genome. Nature 420: 520-562.
-
(2002)
Nature
, vol.420
, pp. 520-562
-
-
-
60
-
-
0142084743
-
Scanning human gene deserts for long-range enhancers
-
Nobrega, M.A., Ovcharenko, I., Afzal, V., and Rubin, E.M. 2003. Scanning human gene deserts for long-range enhancers. Science 302: 413.
-
(2003)
Science
, vol.302
, pp. 413
-
-
Nobrega, M.A.1
Ovcharenko, I.2
Afzal, V.3
Rubin, E.M.4
-
61
-
-
7244259100
-
Megabase deletions of gene deserts result in viable mice
-
Nobrega, M.A., Zhu, Y., Plajzer-Frick, I., Afzal, V., and Rubin, E.M. 2004. Megabase deletions of gene deserts result in viable mice. Nature 431: 988-993.
-
(2004)
Nature
, vol.431
, pp. 988-993
-
-
Nobrega, M.A.1
Zhu, Y.2
Plajzer-Frick, I.3
Afzal, V.4
Rubin, E.M.5
-
62
-
-
1542347045
-
zPicture: Dynamic alignment and visualization tool for analyzing conservation profiles
-
Ovcharenko, I., Loots, G.G., Hardison, R.C., Miller, W., and Stubbs, L. 2004. zPicture: Dynamic alignment and visualization tool for analyzing conservation profiles. Genome Res. 14: 472-477.
-
(2004)
Genome Res.
, vol.14
, pp. 472-477
-
-
Ovcharenko, I.1
Loots, G.G.2
Hardison, R.C.3
Miller, W.4
Stubbs, L.5
-
63
-
-
12744253685
-
Mulan: Multiple-sequence local alignment and visualization for studying function and evolution
-
Ovcharenko, I., Loots, G.G., Giardine, B.M., Hou, M., Ma, J., Hardison, R.C., Stubbs, L., and Miller, W. 2005a. Mulan: Multiple-sequence local alignment and visualization for studying function and evolution. Genome Res. 15: 184-194.
-
(2005)
Genome Res.
, vol.15
, pp. 184-194
-
-
Ovcharenko, I.1
Loots, G.G.2
Giardine, B.M.3
Hou, M.4
Ma, J.5
Hardison, R.C.6
Stubbs, L.7
Miller, W.8
-
64
-
-
12744261452
-
Evolution and functional classification of vertebrate gene deserts
-
Ovcharenko, I., Loots, G.G., Nobrega, M.A., Hardison, R.C., Miller, W., and Stubbs, L. 2005b. Evolution and functional classification of vertebrate gene deserts. Genome Res. 15: 137-145.
-
(2005)
Genome Res.
, vol.15
, pp. 137-145
-
-
Ovcharenko, I.1
Loots, G.G.2
Nobrega, M.A.3
Hardison, R.C.4
Miller, W.5
Stubbs, L.6
-
65
-
-
4644228621
-
A comparative method for finding and folding RNA secondary structures within protein-coding regions
-
Pedersen, J.S., Meyer, I.M., Forsberg, R., Simmonds, P., and Hein, J. 2004. A comparative method for finding and folding RNA secondary structures within protein-coding regions. Nucleic Acids Res. 32: 4925-4936.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 4925-4936
-
-
Pedersen, J.S.1
Meyer, I.M.2
Forsberg, R.3
Simmonds, P.4
Hein, J.5
-
66
-
-
0037251892
-
NCBI Reference Sequence project: Update and current status
-
Pruitt, K.D., Tatusova, T., and Maglott, D.R. 2003. NCBI Reference Sequence project: Update and current status. Nucleic Acids Res. 31: 34-37.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 34-37
-
-
Pruitt, K.D.1
Tatusova, T.2
Maglott, D.R.3
-
67
-
-
0345118944
-
Evolutionary conservation of a 2-kb intronic sequence flanking a tissue-specific alternative exon in the PTBP2 gene
-
Rahman, L., Bliskovski, V., Kaye, F.J., and Zajac-Kaye, M. 2004. Evolutionary conservation of a 2-kb intronic sequence flanking a tissue-specific alternative exon in the PTBP2 gene. Genomics 83: 76-84.
-
(2004)
Genomics
, vol.83
, pp. 76-84
-
-
Rahman, L.1
Bliskovski, V.2
Kaye, F.J.3
Zajac-Kaye, M.4
-
68
-
-
1842684068
-
Genome sequence of the Brown Norway Rat yields insights into mammalian evolution
-
Rat Genome Sequencing Project Consortium. 2004. Genome sequence of the Brown Norway Rat yields insights into mammalian evolution. Nature 428: 493-521.
-
(2004)
Nature
, vol.428
, pp. 493-521
-
-
-
69
-
-
0003157183
-
Noncoding RNA gene detection using comparative sequence analysis
-
Rivas, E. and Eddy, S.R. 2001. Noncoding RNA gene detection using comparative sequence analysis. BMC Bioinformatics 2: 8.
-
(2001)
BMC Bioinformatics
, vol.2
, pp. 8
-
-
Rivas, E.1
Eddy, S.R.2
-
71
-
-
0029988881
-
Control of messenger RNA stability in higher eukaryotes
-
Ross, J. 1996. Control of messenger RNA stability in higher eukaryotes. Trends Genet. 12: 171-175.
-
(1996)
Trends Genet.
, vol.12
, pp. 171-175
-
-
Ross, J.1
-
72
-
-
0034708444
-
Comparative genomics of the eukaryotes
-
Rubin, G.M., Yandell, M.D., Wortman, J.R., Gabor Miklos, G.L., Nelson, C.R., Hariharan, I.K., Fortini, M.E., Li, P.W., Apweiler, R., Fleischmann, W., et al. 2000. Comparative genomics of the eukaryotes. Science 287: 2204-2215.
-
(2000)
Science
, vol.287
, pp. 2204-2215
-
-
Rubin, G.M.1
Yandell, M.D.2
Wortman, J.R.3
Gabor Miklos, G.L.4
Nelson, C.R.5
Hariharan, I.K.6
Fortini, M.E.7
Li, P.W.8
Apweiler, R.9
Fleischmann, W.10
-
73
-
-
0034020416
-
PipMaker: A web server for aligning two genomic DNA sequences
-
Schwartz, S., Zhang, Z., Frazer, K., Smit, A., Riemer, C., Bouck, J., Gibbs, R., Hardison, R., and Miller, W. 2000. PipMaker: A web server for aligning two genomic DNA sequences. Genome Res. 10: 577-586.
-
(2000)
Genome Res.
, vol.10
, pp. 577-586
-
-
Schwartz, S.1
Zhang, Z.2
Frazer, K.3
Smit, A.4
Riemer, C.5
Bouck, J.6
Gibbs, R.7
Hardison, R.8
Miller, W.9
-
74
-
-
0037267806
-
Human-mouse alignments with BLASTZ
-
Schwartz, S., Kent, W.J., Smit, A., Zhang, Z., Baertsch, R., Hardison, R.C., Haussler, D., and Miller, W. 2003. Human-mouse alignments with BLASTZ. Genome Res. 13: 103-107.
-
(2003)
Genome Res.
, vol.13
, pp. 103-107
-
-
Schwartz, S.1
Kent, W.J.2
Smit, A.3
Zhang, Z.4
Baertsch, R.5
Hardison, R.C.6
Haussler, D.7
Miller, W.8
-
75
-
-
0032848247
-
Pattern of selective constraint in C. elegans and C. briggsae genomes
-
Shabalina, S.A. and Kondrashov, A.S. 1999. Pattern of selective constraint in C. elegans and C. briggsae genomes. Genet. Res. 74: 23-30.
-
(1999)
Genet. Res.
, vol.74
, pp. 23-30
-
-
Shabalina, S.A.1
Kondrashov, A.S.2
-
76
-
-
0035399726
-
Selective constraint in intergenic regions of human and mouse genomes
-
Shabalina, S.A., Ogurtsov, A.Y., Kondrashov, V.A., and Kondrashov, A.S. 2001. Selective constraint in intergenic regions of human and mouse genomes. Trends Genet. 17: 373-376.
-
(2001)
Trends Genet.
, vol.17
, pp. 373-376
-
-
Shabalina, S.A.1
Ogurtsov, A.Y.2
Kondrashov, V.A.3
Kondrashov, A.S.4
-
77
-
-
0037158780
-
Computational discovery of sense-antisense transcription in the human and mouse genomes
-
research0044
-
Shendure, J. and Church, G.M. 2002. Computational discovery of sense-antisense transcription in the human and mouse genomes. Genome Biol. 3: research0044.
-
(2002)
Genome Biol.
, vol.3
-
-
Shendure, J.1
Church, G.M.2
-
78
-
-
1542510106
-
Phylogenetic estimation of context-dependent substitution rates by maximum likelihood
-
Siepel, A. and Haussler, D. 2004. Phylogenetic estimation of context-dependent substitution rates by maximum likelihood. Mol. Biol. Evol. 21: 468-488.
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 468-488
-
-
Siepel, A.1
Haussler, D.2
-
79
-
-
17644409239
-
Phylogenetic hidden Markov models
-
ed. R. Nielsen, Springer, New York
-
_. 2005. Phylogenetic hidden Markov models. In Statistical methods in molecular evolution (ed. R. Nielsen), pp. 325-351. Springer, New York.
-
(2005)
Statistical Methods in Molecular Evolution
, pp. 325-351
-
-
-
80
-
-
4744370251
-
Evidence for turnover of functional noncoding DNA in mammalian genome evolution
-
Smith, N.G.C., Brandstrom, M., and Ellegren, H. 2004. Evidence for turnover of functional noncoding DNA in mammalian genome evolution. Genomics 84: 806-813.
-
(2004)
Genomics
, vol.84
, pp. 806-813
-
-
Smith, N.G.C.1
Brandstrom, M.2
Ellegren, H.3
-
81
-
-
0038486897
-
Intronic sequences flanking alternatively spliced exons are conserved between human and mouse
-
Sorek, R. and Ast, G. 2003. Intronic sequences flanking alternatively spliced exons are conserved between human and mouse. Genome Res. 13: 1631-1637.
-
(2003)
Genome Res.
, vol.13
, pp. 1631-1637
-
-
Sorek, R.1
Ast, G.2
-
82
-
-
4243088097
-
The genome sequence of Caenorhabditis briggsae: A platform for comparative genomics
-
Stein, L.D., Bao, Z., Blasiar, D., Blumenthal, T., Brent, M.R., Chen, N., Chinwalla, A., Clarke, L., Clee, C., Coghlan, A., et al. 2003. The genome sequence of Caenorhabditis briggsae: A platform for comparative genomics. PLoS Biol. 1: E45.
-
(2003)
PLoS Biol.
, vol.1
-
-
Stein, L.D.1
Bao, Z.2
Blasiar, D.3
Blumenthal, T.4
Brent, M.R.5
Chen, N.6
Chinwalla, A.7
Clarke, L.8
Clee, C.9
Coghlan, A.10
-
83
-
-
0033215489
-
Comparison of five methods for finding conserved sequences in multiple alignments of gene regulatory regions
-
Stojanovic, N., Florea, L., Riemer, C., Gumucio, D., Slightom, J., Goodman, M., Miller, W., and Hardison, R. 1999. Comparison of five methods for finding conserved sequences in multiple alignments of gene regulatory regions. Nucleic Acids Res. 27: 3899-3910.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 3899-3910
-
-
Stojanovic, N.1
Florea, L.2
Riemer, C.3
Gumucio, D.4
Slightom, J.5
Goodman, M.6
Miller, W.7
Hardison, R.8
-
84
-
-
2442694425
-
Transcriptome and genome conservation of alternative splicing events in humans and mice
-
Sugnet, C.W., Kent, W.J., Ares, M., and Haussler, D. 2004. Transcriptome and genome conservation of alternative splicing events in humans and mice. In Proc. 9th Pacific Symp. on Biocomputing, pp. 66-77.
-
(2004)
Proc. 9th Pacific Symp. on Biocomputing
, pp. 66-77
-
-
Sugnet, C.W.1
Kent, W.J.2
Ares, M.3
Haussler, D.4
-
85
-
-
0041465867
-
Comparative analyses of multi-species sequences from targeted genomic regions
-
Thomas, J.W., Touchman, J.W., Blakesley, R.W., Bouffard, G.G., Beckstrom-Sternberg, S.M., Margulies, E.H., Blanchette, M., Siepel, A.C., Thomas, P.J., McDowell, J.C., et al. 2003. Comparative analyses of multi-species sequences from targeted genomic regions. Nature 424: 788-793.
-
(2003)
Nature
, vol.424
, pp. 788-793
-
-
Thomas, J.W.1
Touchman, J.W.2
Blakesley, R.W.3
Bouffard, G.G.4
Beckstrom-Sternberg, S.M.5
Margulies, E.H.6
Blanchette, M.7
Siepel, A.C.8
Thomas, P.J.9
McDowell, J.C.10
-
86
-
-
3543060533
-
Efficient identification of regulatory sequences in the chicken genome by a powerful combination of embryo electroporation and genome comparison
-
Uchikawa, M., Takemoto, T., Kamachi, Y., and Kondoh, H. 2004. Efficient identification of regulatory sequences in the chicken genome by a powerful combination of embryo electroporation and genome comparison. Mech. Dev. 121: 1145-1158.
-
(2004)
Mech. Dev.
, vol.121
, pp. 1145-1158
-
-
Uchikawa, M.1
Takemoto, T.2
Kamachi, Y.3
Kondoh, H.4
-
87
-
-
0141561907
-
Transposable elements in mammals promote regulatory variation and diversification of genes with specialized functions
-
van de Lagemaat, L.N., Landry, J.-R., Mager, D.L., and Medstrand, P. 2003. Transposable elements in mammals promote regulatory variation and diversification of genes with specialized functions. Trends Genet. 19: 530-536.
-
(2003)
Trends Genet.
, vol.19
, pp. 530-536
-
-
Van De Lagemaat, L.N.1
Landry, J.-R.2
Mager, D.L.3
Medstrand, P.4
-
88
-
-
0024497416
-
Mutation rates differ among regions of the mammalian genome
-
Wolfe, K.H., Sharp, P.M., and Li, W.-H. 1989. Mutation rates differ among regions of the mammalian genome. Nature 337: 283-285.
-
(1989)
Nature
, vol.337
, pp. 283-285
-
-
Wolfe, K.H.1
Sharp, P.M.2
Li, W.-H.3
-
89
-
-
20044366725
-
Highly conserved non-coding sequences are associated with vertebrate development
-
Woolfe, A., Goodson, M., Goode, D., Snell, P., McEwen, G., Vavouri, T., Smith, S., North, P., Callaway, H., Kelly, K., et al. 2005. Highly conserved non-coding sequences are associated with vertebrate development. PLoS Biol. 3: e7.
-
(2005)
PLoS Biol.
, vol.3
-
-
Woolfe, A.1
Goodson, M.2
Goode, D.3
Snell, P.4
McEwen, G.5
Vavouri, T.6
Smith, S.7
North, P.8
Callaway, H.9
Kelly, K.10
-
90
-
-
15244358503
-
Systematic discovery of regulatory motifs in human promoters and 3′ UTRs by comparison of several mammals
-
Xie, X., Lu, J., Kulbokas, E.J., Golub, T.R., Mootha, V., Lindblad-Toh, K., Lander, E.S., and Kellis, M. 2005. Systematic discovery of regulatory motifs in human promoters and 3′ UTRs by comparison of several mammals. Nature 434: 338-345.
-
(2005)
Nature
, vol.434
, pp. 338-345
-
-
Xie, X.1
Lu, J.2
Kulbokas, E.J.3
Golub, T.R.4
Mootha, V.5
Lindblad-Toh, K.6
Lander, E.S.7
Kellis, M.8
-
91
-
-
0028813337
-
A space-time process model for the evolution of DNA sequences
-
Yang, Z. 1995. A space-time process model for the evolution of DNA sequences. Genetics 139: 993-1005.
-
(1995)
Genetics
, vol.139
, pp. 993-1005
-
-
Yang, Z.1
-
92
-
-
2142654329
-
MicroRNA-directed cleavage of HOXB8 mRNA
-
Yekta, S., Shih, I.-H., and Bartel, D.P. 2004. MicroRNA-directed cleavage of HOXB8 mRNA. Science 304: 594-596.
-
(2004)
Science
, vol.304
, pp. 594-596
-
-
Yekta, S.1
Shih, I.-H.2
Bartel, D.P.3
-
93
-
-
12244275645
-
Widespread occurrence of antisense transcription in the human genome
-
Yelin, R., Dahary, D., Sorek, R., Levanon, E.Y., Goldstein, O., Shoshan, A., Diber, A., Biton, S., Tamir, Y., Khosravi, R., et al. 2003. Widespread occurrence of antisense transcription in the human genome. Nat. Biotechnol. 21: 379-386.
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 379-386
-
-
Yelin, R.1
Dahary, D.2
Sorek, R.3
Levanon, E.Y.4
Goldstein, O.5
Shoshan, A.6
Diber, A.7
Biton, S.8
Tamir, Y.9
Khosravi, R.10
-
94
-
-
33645180553
-
-
Supplemental data for this study
-
http://www.cse.ucsc.edu/∼acs/conservation; Supplemental data for this study.
-
-
-
-
95
-
-
33645172886
-
-
UC Santa Cruz Genome Browser
-
http://genome.ucsc.edu; UC Santa Cruz Genome Browser.
-
-
-
-
96
-
-
33645176101
-
-
UC Santa Cruz Table Browser
-
http://genome.ucsc.edu/cgi-bin/hgTables; UC Santa Cruz Table Browser.
-
-
-
-
97
-
-
33645179038
-
-
download page for yeast sequence data, Washington University, St. Louis
-
http://www.genetics.wustl.edu/saccharomycesgenomes/Contigs; download page for yeast sequence data, Washington University, St. Louis.
-
-
-
-
98
-
-
33645181108
-
-
download page for yeast sequence data, Broad Institute
-
http://www.broad.mit.edu/ftp/pub/annotation/fungi/comp_yeasts; download page for yeast sequence data, Broad Institute.
-
-
-
-
99
-
-
33645178723
-
-
RepeatMasker home page
-
http://ftp.genome.washington.edu/cgi-bin/RepeatMasker; RepeatMasker home page.
-
-
-
-
100
-
-
33645179754
-
-
featureBits source code
-
http://www.soe.ucsc.edu/∼kent/src/unzipped/hg/featureBits; featureBits source code.
-
-
-
-
101
-
-
33645180439
-
-
Online Mendelian Inheritance in Man home page
-
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM; Online Mendelian Inheritance in Man home page.
-
-
-
|