메뉴 건너뛰기




Volumn 18, Issue 12, 2013, Pages 15357-15397

Fluorescent probes for nucleic acid visualization in fixed and live cells

Author keywords

Binary probes; DNA; Fluorescent probes; Fluorophores; Imaging; Living cells; Minor groove binders; Molecular beacons; RNA; Triplex forming oligonucleotides

Indexed keywords

DNA; FLUORESCENT DYE; NUCLEIC ACID; RNA;

EID: 84890964740     PISSN: None     EISSN: 14203049     Source Type: Journal    
DOI: 10.3390/molecules181215357     Document Type: Review
Times cited : (93)

References (263)
  • 1
    • 33646847806 scopus 로고    scopus 로고
    • Advances in fluorescent tracking of nucleic acids in living cells
    • Dirks, R.W.; Tanke, H.J. Advances in fluorescent tracking of nucleic acids in living cells. BioTechniques 2006, 40, 489-496.
    • (2006) BioTechniques , vol.40 , pp. 489-496
    • Dirks, R.W.1    Tanke, H.J.2
  • 2
    • 18144425559 scopus 로고    scopus 로고
    • Quenched probes for highly specific detection of cellular RNAs
    • Silverman, A.P.; Kool, E.T. Quenched probes for highly specific detection of cellular RNAs. Trends Biotechnol. 2005, 23, 225-230.
    • (2005) Trends Biotechnol. , vol.23 , pp. 225-230
    • Silverman, A.P.1    Kool, E.T.2
  • 3
    • 84879997754 scopus 로고    scopus 로고
    • Imaging cell biology in live animals: Ready for prime time
    • Weigert, R.; Porat-Shliom, N.; Amornphimoltham, P. Imaging cell biology in live animals: Ready for prime time. J. Cell Biol. 2013, 201, 969-979.
    • (2013) J. Cell Biol. , vol.201 , pp. 969-979
    • Weigert, R.1    Porat-Shliom, N.2    Amornphimoltham, P.3
  • 4
    • 84873801934 scopus 로고    scopus 로고
    • High-throughput sequencing for biology and medicine
    • Soon, W.W.; Hariharan, M.; Snyder, M.P. High-throughput sequencing for biology and medicine. Mol. Syst. Biol. 2013, 9, 640.
    • (2013) Mol. Syst. Biol. , vol.9 , pp. 640
    • Soon, W.W.1    Hariharan, M.2    Snyder, M.P.3
  • 8
    • 70450193807 scopus 로고    scopus 로고
    • Radiolabelled oligonucleotides for imaging of gene expression with PET
    • Lendvai, G.; Estrada, S.; Bergstrom, M. Radiolabelled oligonucleotides for imaging of gene expression with PET. Curr. Med. Chem. 2009, 16, 4445-4461.
    • (2009) Curr. Med. Chem. , vol.16 , pp. 4445-4461
    • Lendvai, G.1    Estrada, S.2    Bergstrom, M.3
  • 10
    • 56749104130 scopus 로고    scopus 로고
    • Fluorescent probes for super-resolution imaging in living cells
    • Fernández-Suárez, M.; Ting, A.Y. Fluorescent probes for super-resolution imaging in living cells. Nat. Rev. Mol. Cell. Biol. 2008, 9, 929-943.
    • (2008) Nat. Rev. Mol. Cell. Biol. , vol.9 , pp. 929-943
    • Fernández-Suárez, M.1    Ting, A.Y.2
  • 11
    • 0031663369 scopus 로고    scopus 로고
    • The geen fluorescent protein
    • Tsien, R.Y. The geen fluorescent protein. Annu. Rev. Biochem. 1998, 67, 509-544.
    • (1998) Annu. Rev. Biochem. , vol.67 , pp. 509-544
    • Tsien, R.Y.1
  • 12
    • 0030087710 scopus 로고    scopus 로고
    • Engineering green fluorescent protein for improved brightness, longer wavelengths and fluorescence resonance energy transfer
    • Heim, R.; Tsien, R.Y. Engineering green fluorescent protein for improved brightness, longer wavelengths and fluorescence resonance energy transfer. Curr. Biol. 1996, 6, 178-182.
    • (1996) Curr. Biol. , vol.6 , pp. 178-182
    • Heim, R.1    Tsien, R.Y.2
  • 13
    • 0036489443 scopus 로고    scopus 로고
    • Green fluorescent protein (GFP): Applications, structure, and related photophysical behavior
    • Zimmer, M. Green fluorescent protein (GFP): Applications, structure, and related photophysical behavior. Chem. Rev. 2002, 102, 759-782.
    • (2002) Chem. Rev. , vol.102 , pp. 759-782
    • Zimmer, M.1
  • 14
    • 0037418882 scopus 로고    scopus 로고
    • Development and use of fluorescent protein markers in living cells
    • Lippincott-Schwartz, J.; Patterson, G.H. Development and use of fluorescent protein markers in living cells. Science 2003, 300, 87-91.
    • (2003) Science , vol.300 , pp. 87-91
    • Lippincott-Schwartz, J.1    Patterson, G.H.2
  • 15
    • 0004002022 scopus 로고    scopus 로고
    • Oxford University Press: Oxford, UK, New York, NY, USA, Tokyo, Japan
    • Choo, K.H.A. The Centromere; Oxford University Press: Oxford, UK, New York, NY, USA, Tokyo, Japan, 1997; p. 318.
    • (1997) The Centromere , pp. 318
    • Choo, K.H.A.1
  • 16
    • 0034521108 scopus 로고    scopus 로고
    • Telomeres, telomerase, and cancer: Life on the edge of genomic stability
    • Oulton, R.; Harrington, L. Telomeres, telomerase, and cancer: Life on the edge of genomic stability. Curr. Opin. Oncol. 2000, 12, 74-81.
    • (2000) Curr. Opin. Oncol. , vol.12 , pp. 74-81
    • Oulton, R.1    Harrington, L.2
  • 17
    • 0037889841 scopus 로고    scopus 로고
    • Telomere inhibition and telomere disruption as processes for drug targeting
    • Rezler, E.M.; Bearss, D.J.; Hurley, L.H. Telomere inhibition and telomere disruption as processes for drug targeting. Annu. Rev. Pharmacol. Toxicol. 2003, 43, 359-379.
    • (2003) Annu. Rev. Pharmacol. Toxicol. , vol.43 , pp. 359-379
    • Rezler, E.M.1    Bearss, D.J.2    Hurley, L.H.3
  • 18
    • 77649180958 scopus 로고    scopus 로고
    • Telomeres: Protecting chromosomes against genome instability
    • O'Sullivan, R.J.; Karlseder, J. Telomeres: Protecting chromosomes against genome instability. Nat. Rev. Mol. Cell. Biol. 2010, 11, 171-181.
    • (2010) Nat. Rev. Mol. Cell. Biol. , vol.11 , pp. 171-181
    • O'Sullivan, R.J.1    Karlseder, J.2
  • 19
    • 0033855205 scopus 로고    scopus 로고
    • A review of Fluorescence in Situ Hybridization (FISH): Current status and future prospects
    • Nath, J.; Johnson, K.L. A review of Fluorescence in Situ Hybridization (FISH): Current status and future prospects. Biotech. Histochem. 2000, 75, 54-78.
    • (2000) Biotech. Histochem. , vol.75 , pp. 54-78
    • Nath, J.1    Johnson, K.L.2
  • 20
    • 0042671348 scopus 로고    scopus 로고
    • Fluorescence in situ hybridization: Past, present and future
    • Levsky, J.M.; Singer, R.H. Fluorescence in situ hybridization: Past, present and future. J. Cell Sci. 2003, 116, 2833-2838.
    • (2003) J. Cell Sci. , vol.116 , pp. 2833-2838
    • Levsky, J.M.1    Singer, R.H.2
  • 21
    • 34247530295 scopus 로고    scopus 로고
    • Detection of low-copy-number genomic DNA sequences in individual bacterial cells by using peptide nucleic acid-assisted rolling-circle amplification and fluorescence in situ hybridization
    • Smolina, I.; Lee, C.; Frank-Kamenetskii, M. Detection of low-copy-number genomic DNA sequences in individual bacterial cells by using peptide nucleic acid-assisted rolling-circle amplification and fluorescence in situ hybridization. Appl. Environ. Microbiol. 2007, 73, 2324-2328.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 2324-2328
    • Smolina, I.1    Lee, C.2    Frank-Kamenetskii, M.3
  • 22
    • 45349089291 scopus 로고    scopus 로고
    • Centromere mitotic recombination in mammalian cells
    • Jaco, I.; Canela, A.; Vera, E.; Blasco, M.A. Centromere mitotic recombination in mammalian cells. J. Cell Biol. 2008, 181, 885-892.
    • (2008) J. Cell Biol. , vol.181 , pp. 885-892
    • Jaco, I.1    Canela, A.2    Vera, E.3    Blasco, M.A.4
  • 23
    • 9644254229 scopus 로고    scopus 로고
    • The peptide nucleic acids (PNAs): A new generation of probes for genetic and cytogenetic analyses
    • Paulasova, P.; Pellestor, F. The peptide nucleic acids (PNAs): A new generation of probes for genetic and cytogenetic analyses. Ann. Genet. Paris 2004, 47, 349-358.
    • (2004) Ann. Genet. Paris , vol.47 , pp. 349-358
    • Paulasova, P.1    Pellestor, F.2
  • 24
    • 2542506381 scopus 로고    scopus 로고
    • The peptide nucleic acids, efficient tools for molecular diagnosis (Review)
    • Pellestor, F.; Paulasova, P. The peptide nucleic acids, efficient tools for molecular diagnosis (Review). Int. J. Mol. Med. 2004, 13, 521-525.
    • (2004) Int. J. Mol. Med. , vol.13 , pp. 521-525
    • Pellestor, F.1    Paulasova, P.2
  • 25
    • 4644328087 scopus 로고    scopus 로고
    • The peptide nucleic acids (PNAs), powerful tools for molecular genetics and cytogenetics
    • Pellestor, F.; Paulasova, P. The peptide nucleic acids (PNAs), powerful tools for molecular genetics and cytogenetics. Eur. J. Hum. Genet. 2004, 12, 694-700.
    • (2004) Eur. J. Hum. Genet. , vol.12 , pp. 694-700
    • Pellestor, F.1    Paulasova, P.2
  • 26
    • 79955037365 scopus 로고    scopus 로고
    • LNA for optimization of fluorescent oligonucleotide probes: Improved spectral properties and target binding
    • Astakhova, I.V.; Ustinov, A.V.; Korshun, V.A.; Wengel, J. LNA for optimization of fluorescent oligonucleotide probes: Improved spectral properties and target binding. Bioconjug. Chem. 2011, 22, 533-539.
    • (2011) Bioconjug. Chem. , vol.22 , pp. 533-539
    • Astakhova, I.V.1    Ustinov, A.V.2    Korshun, V.A.3    Wengel, J.4
  • 28
    • 0042234999 scopus 로고    scopus 로고
    • FISHing with locked nucleic acids (LNA): Evaluation of different LNA/DNA mixmers
    • Silahtaroglu, A.N.; Tommerup, N.; Vissing, H. FISHing with locked nucleic acids (LNA): Evaluation of different LNA/DNA mixmers. Mol. Cell Probes 2003, 17, 165-169.
    • (2003) Mol. Cell Probes , vol.17 , pp. 165-169
    • Silahtaroglu, A.N.1    Tommerup, N.2    Vissing, H.3
  • 29
    • 27144525471 scopus 로고    scopus 로고
    • Dramatically improved RNA in situ hybridization signals using LNA-modified probes
    • Thomsen, R.; Nielsen, P.S.; Jensen, T.H. Dramatically improved RNA in situ hybridization signals using LNA-modified probes. RNA 2005, 11, 1745-1748.
    • (2005) RNA , vol.11 , pp. 1745-1748
    • Thomsen, R.1    Nielsen, P.S.2    Jensen, T.H.3
  • 31
    • 0042691476 scopus 로고    scopus 로고
    • COMBO-FISH: Specific labeling of nondenatured chromatin targets by computer-selected DNA oligonucleotide probe combinations
    • Hausmann, M.; Winkler, R.; Hildenbrand, G.; Finsterle, J.; Weisel, A.; Rapp, A.; Schmitt, E.; Janz, S.; Cremer, C. COMBO-FISH: Specific labeling of nondenatured chromatin targets by computer-selected DNA oligonucleotide probe combinations. BioTechniques 2003, 35, 564-577.
    • (2003) BioTechniques , vol.35 , pp. 564-577
    • Hausmann, M.1    Winkler, R.2    Hildenbrand, G.3    Finsterle, J.4    Weisel, A.5    Rapp, A.6    Schmitt, E.7    Janz, S.8    Cremer, C.9
  • 35
    • 0028827080 scopus 로고
    • DAPI: A DNA-specific fluorescent probe
    • Kapuscinski, J. DAPI: A DNA-specific fluorescent probe. Biotech. Histochem. 1995, 70, 220-233.
    • (1995) Biotech. Histochem. , vol.70 , pp. 220-233
    • Kapuscinski, J.1
  • 36
    • 0242500918 scopus 로고    scopus 로고
    • Design of a new fluorescent cofactor for DNA methyltransferases and sequence-specific labeling of DNA
    • Pljevaljcic, G.; Pignot, M.; Weinhold, E. Design of a new fluorescent cofactor for DNA methyltransferases and sequence-specific labeling of DNA. J. Am. Chem. Soc. 2003, 125, 3486-3492.
    • (2003) J. Am. Chem. Soc. , vol.125 , pp. 3486-3492
    • Pljevaljcic, G.1    Pignot, M.2    Weinhold, E.3
  • 38
  • 39
    • 84865571917 scopus 로고    scopus 로고
    • Visualising chromosomal replication sites and replicons in mammalian cells
    • Maya-Mendoza, A.; Olivares-Chauvet, P.; Kohlmeier, F.; Jackson, D.A. Visualising chromosomal replication sites and replicons in mammalian cells. Methods 2012, 57, 140-148.
    • (2012) Methods , vol.57 , pp. 140-148
    • Maya-Mendoza, A.1    Olivares-Chauvet, P.2    Kohlmeier, F.3    Jackson, D.A.4
  • 40
    • 77956039093 scopus 로고    scopus 로고
    • Chapter 22-Quantitative Localization of Chromosomal Loci by Immunofluorescence
    • Jonathan, W., Christine, G., Gerald, R.F., Eds.; Academic Press: New York, NY, USA
    • Brickner, D.G.; Light, W.; Brickner, J.H. Chapter 22-Quantitative Localization of Chromosomal Loci by Immunofluorescence. In Methods in Enzymology; Jonathan, W., Christine, G., Gerald, R.F., Eds.; Academic Press: New York, NY, USA, 2010; Volume 470, pp. 569-580.
    • (2010) Methods in Enzymology , vol.470 , pp. 569-580
    • Brickner, D.G.1    Light, W.2    Brickner, J.H.3
  • 41
    • 84875464903 scopus 로고    scopus 로고
    • Quantitative visualization of DNA G-quadruplex structures in human cells
    • Biffi, G.; Tannahill, D.; McCafferty, J.; Balasubramanian, S. Quantitative visualization of DNA G-quadruplex structures in human cells. Nat. Chem. 2013, 5, 182-186.
    • (2013) Nat. Chem. , vol.5 , pp. 182-186
    • Biffi, G.1    Tannahill, D.2    McCafferty, J.3    Balasubramanian, S.4
  • 42
    • 56349124122 scopus 로고    scopus 로고
    • Construction of three quadruple-fluorescent MDA435 cell lines that enable monitoring of the whole chromosome segregation process in the living state
    • Sugimoto, K.; Senda-Murata, K.; Oka, S. Construction of three quadruple-fluorescent MDA435 cell lines that enable monitoring of the whole chromosome segregation process in the living state. Mutat. Res. Genet. Toxicol. Environ. Mutagen. 2008, 657, 56-62.
    • (2008) Mutat. Res. Genet. Toxicol. Environ. Mutagen. , vol.657 , pp. 56-62
    • Sugimoto, K.1    Senda-Murata, K.2    Oka, S.3
  • 43
    • 49349088193 scopus 로고    scopus 로고
    • Visualizing genetic loci and molecular machines in living bacteria (Biochemical Society Linked Focused Meetings)
    • Wang, X.; Reyes-Lamothe, R.; Sherratt, D.J. Visualizing genetic loci and molecular machines in living bacteria (Biochemical Society Linked Focused Meetings). Biochem. Soc. Trans. 2008, 36, 749-753.
    • (2008) Biochem. Soc. Trans. , vol.36 , pp. 749-753
    • Wang, X.1    Reyes-Lamothe, R.2    Sherratt, D.J.3
  • 45
    • 77952651869 scopus 로고    scopus 로고
    • Four-dimensional telomere analysis in recordings of living human cells acquired with Controlled Light Exposure Microscopy
    • De Vos, W.H.; Joss, G.H.; Haffmans, W.; Hoebe, R.A.; Manders, E.M.M.; van Oostveldt, P. Four-dimensional telomere analysis in recordings of living human cells acquired with Controlled Light Exposure Microscopy. J. Microsc. 2010, 238, 254-264.
    • (2010) J. Microsc. , vol.238 , pp. 254-264
    • De Vos, W.H.1    Joss, G.H.2    Haffmans, W.3    Hoebe, R.A.4    Manders, E.M.M.5    Van Oostveldt, P.6
  • 47
    • 0038365420 scopus 로고    scopus 로고
    • Targeted delivery of DNA to the mitochondrial compartment via import sequence-conjugated peptide nucleic acid
    • Flierl, A.; Jackson, C.; Cottrell, B.; Murdock, D.; Seibel, P.; Wallace, D.C. Targeted delivery of DNA to the mitochondrial compartment via import sequence-conjugated peptide nucleic acid. Mol. Ther. 2003, 7, 550-557.
    • (2003) Mol. Ther. , vol.7 , pp. 550-557
    • Flierl, A.1    Jackson, C.2    Cottrell, B.3    Murdock, D.4    Seibel, P.5    Wallace, D.C.6
  • 48
    • 0035930331 scopus 로고    scopus 로고
    • Recognition of specific DNA sequences
    • Garvie, C.W.; Wolberger, C. Recognition of specific DNA sequences. Mol. Cell 2001, 8, 937-946.
    • (2001) Mol. Cell , vol.8 , pp. 937-946
    • Garvie, C.W.1    Wolberger, C.2
  • 50
    • 33750060696 scopus 로고    scopus 로고
    • Direct detection of double-stranded DNA: Molecular methods and applications for DNA diagnostics
    • Ghosh, I.; Stains, C.I.; Ooi, A.T.; Segal, D.J. Direct detection of double-stranded DNA: Molecular methods and applications for DNA diagnostics. Mol. Biosyst. 2006, 2, 551-560.
    • (2006) Mol. Biosyst. , vol.2 , pp. 551-560
    • Ghosh, I.1    Stains, C.I.2    Ooi, A.T.3    Segal, D.J.4
  • 52
    • 77953633943 scopus 로고    scopus 로고
    • The discovery of zinc fingers and their applications in gene regulation and genome manipulation
    • Klug, A. The discovery of zinc fingers and their applications in gene regulation and genome manipulation. Annu. Rev. Biochem. 2010, 79, 213-231.
    • (2010) Annu. Rev. Biochem. , vol.79 , pp. 213-231
    • Klug, A.1
  • 60
    • 0032750623 scopus 로고    scopus 로고
    • Triple helix formation and the antigene strategy for sequence-specific control of gene expression
    • Praseuth, D.; Guieysse, A.L.; Hélène, C. Triple helix formation and the antigene strategy for sequence-specific control of gene expression. Biochim. Biophys. Acta Gene Struct. Express. 1999, 1489, 181-206.
    • (1999) Biochim. Biophys. Acta Gene Struct. Express. , vol.1489 , pp. 181-206
    • Praseuth, D.1    Guieysse, A.L.2    Hélène, C.3
  • 61
    • 0035404317 scopus 로고    scopus 로고
    • Triplex-forming molecules: From concepts to applications
    • Faria, M.; Giovannangeli, C. Triplex-forming molecules: From concepts to applications. J. Gene Med. 2001, 3, 299-310.
    • (2001) J. Gene Med. , vol.3 , pp. 299-310
    • Faria, M.1    Giovannangeli, C.2
  • 62
    • 0344641913 scopus 로고    scopus 로고
    • Sequence-specific DNA recognition by polyamides
    • Dervan, P.B.; Burli, R.W. Sequence-specific DNA recognition by polyamides. Curr. Opin. Chem. Biol. 1999, 3, 688-693.
    • (1999) Curr. Opin. Chem. Biol. , vol.3 , pp. 688-693
    • Dervan, P.B.1    Burli, R.W.2
  • 63
    • 0034830898 scopus 로고    scopus 로고
    • Molecular recognition of DNA by small molecules
    • Dervan, P.B. Molecular recognition of DNA by small molecules. Bioorgan. Med. Chem. 2001, 9, 2215-2235.
    • (2001) Bioorgan. Med. Chem. , vol.9 , pp. 2215-2235
    • Dervan, P.B.1
  • 64
    • 0027197574 scopus 로고
    • Oligonucleotide-directed triple-helix formation
    • Sun, J.S.; Hélène, C. Oligonucleotide-directed triple-helix formation. Curr. Opin. Struct. Biol. 1993, 3, 345-356.
    • (1993) Curr. Opin. Struct. Biol. , vol.3 , pp. 345-356
    • Sun, J.S.1    Hélène, C.2
  • 65
    • 0034084567 scopus 로고    scopus 로고
    • Targeting DNA with triplexes
    • Fox, K.R. Targeting DNA with triplexes. Curr. Med. Chem. 2000, 7, 17-37.
    • (2000) Curr. Med. Chem. , vol.7 , pp. 17-37
    • Fox, K.R.1
  • 66
    • 0035223551 scopus 로고    scopus 로고
    • Gene Targeting via Triple-Helix Formation
    • Moldave, K., Ed.; Academic Press Inc: San Diego, CA, USA
    • Casey, B.P.; Glazer, P.M. Gene Targeting via Triple-Helix Formation. In Progress in Nucleic Acid Research and Molecular Biology; Moldave, K., Ed.; Academic Press Inc: San Diego, CA, USA, 2001; Volume 67, pp. 163-192.
    • (2001) Progress in Nucleic Acid Research and Molecular Biology , vol.67 , pp. 163-192
    • Casey, B.P.1    Glazer, P.M.2
  • 67
    • 0035475787 scopus 로고    scopus 로고
    • Triplex forming oligonucleotides: Sequence-specific tools for gene targeting
    • Knauert, M.P.; Glazer, P.M. Triplex forming oligonucleotides: Sequence-specific tools for gene targeting. Hum. Mol. Genet. 2001, 10, 2243-2251.
    • (2001) Hum. Mol. Genet. , vol.10 , pp. 2243-2251
    • Knauert, M.P.1    Glazer, P.M.2
  • 68
    • 0036120314 scopus 로고    scopus 로고
    • Triplex-forming oligonucleotides: Principles and applications
    • Vasquez, K.M.; Glazer, P.M. Triplex-forming oligonucleotides: Principles and applications. Quart. Rev. Biophys. 2002, 35, 89-107.
    • (2002) Quart. Rev. Biophys. , vol.35 , pp. 89-107
    • Vasquez, K.M.1    Glazer, P.M.2
  • 71
    • 0037007172 scopus 로고    scopus 로고
    • Formation of DNA triple helices by an oligonucleotide conjugated to a fluorescent ruthenium complex
    • Grimm, G.N.; Boutorine, A.S.; Lincoln, P.; Nordén, B.; Hélène, C. Formation of DNA triple helices by an oligonucleotide conjugated to a fluorescent ruthenium complex. ChemBioChem 2002, 3, 324-331.
    • (2002) ChemBioChem , vol.3 , pp. 324-331
    • Grimm, G.N.1    Boutorine, A.S.2    Lincoln, P.3    Nordén, B.4    Hélène, C.5
  • 72
    • 27144488295 scopus 로고    scopus 로고
    • Stable and selective formation of Hoogsteen-type triplexes and duplexes using twisted intercalating nucleic acids (TINA) prepared via postsynthetic sonogashira solid-phase coupling reactions
    • Filichev, V.V.; Pedersen, E.B. Stable and selective formation of Hoogsteen-type triplexes and duplexes using twisted intercalating nucleic acids (TINA) prepared via postsynthetic sonogashira solid-phase coupling reactions. J. Am. Chem. Soc. 2005, 127, 14849-14858.
    • (2005) J. Am. Chem. Soc. , vol.127 , pp. 14849-14858
    • Filichev, V.V.1    Pedersen, E.B.2
  • 73
    • 33747892599 scopus 로고    scopus 로고
    • High thermal stability of 5′-5′-linked alternate Hoogsteen triplexes at physiological pH
    • Filichev, V.V.; Nielsen, M.C.; Bomholt, N.; Jessen, C.H.; Pedersen, E.B. High thermal stability of 5′-5′-linked alternate Hoogsteen triplexes at physiological pH. Angew. Chem. Int. Ed. 2006, 45, 5311-5315.
    • (2006) Angew. Chem. Int. Ed. , vol.45 , pp. 5311-5315
    • Filichev, V.V.1    Nielsen, M.C.2    Bomholt, N.3    Jessen, C.H.4    Pedersen, E.B.5
  • 74
    • 34547563863 scopus 로고    scopus 로고
    • Stabilization of parallel triplexes by Twisted Intercalating Nucleic Acids (TINAs) Incorporating 1,2,3-triazole units and prepared by microwave-accelerated click chemistry
    • Géci, I.; Filichev, V.; Pedersen, E. Stabilization of parallel triplexes by Twisted Intercalating Nucleic Acids (TINAs) Incorporating 1,2,3-triazole units and prepared by microwave-accelerated click chemistry. Chem. Eur. J. 2007, 13, 6379-6386.
    • (2007) Chem. Eur. J. , vol.13 , pp. 6379-6386
    • Géci, I.1    Filichev, V.2    Pedersen, E.3
  • 75
    • 80053586920 scopus 로고    scopus 로고
    • Triplex-forming Twisted Intercalating Nucleic Acids (TINAs): Design rules, stabilization of antiparallel DNA triplexes and inhibition of G-quartet-dependent self-association
    • Doluca, O.; Boutorine, A.S.; Filichev, V.V. Triplex-forming Twisted Intercalating Nucleic Acids (TINAs): Design rules, stabilization of antiparallel DNA triplexes and inhibition of G-quartet-dependent self-association. ChemBioChem 2011, 12, 2365-2374.
    • (2011) ChemBioChem , vol.12 , pp. 2365-2374
    • Doluca, O.1    Boutorine, A.S.2    Filichev, V.V.3
  • 76
    • 43149115635 scopus 로고    scopus 로고
    • Triplex formation by pyrene-labelled probes for nucleic acid detection in fluorescence assays
    • Van Daele, I.; Bomholt, N.; Filichev, V.V.; van Calenbergh, S.; Pedersen, E.B. Triplex formation by pyrene-labelled probes for nucleic acid detection in fluorescence assays. ChemBioChem 2008, 9, 791-801.
    • (2008) ChemBioChem , vol.9 , pp. 791-801
    • Van Daele, I.1    Bomholt, N.2    Filichev, V.V.3    Van Calenbergh, S.4    Pedersen, E.B.5
  • 77
    • 56349092915 scopus 로고    scopus 로고
    • Targeting DNA with "light-up" pyrimidine triple-helical forming oligonucleotides conjugated to stabilizing fluorophores (LU-TFOs)
    • Renard, B.L.; Lartia, R.; Asseline, U. Targeting DNA with "light-up" pyrimidine triple-helical forming oligonucleotides conjugated to stabilizing fluorophores (LU-TFOs). Org. Biomol. Chem. 2008, 6, 4413-4425.
    • (2008) Org. Biomol. Chem. , vol.6 , pp. 4413-4425
    • Renard, B.L.1    Lartia, R.2    Asseline, U.3
  • 78
    • 0032765343 scopus 로고    scopus 로고
    • Third-strand in situ hybridization (TISH) to non-denatured metaphase spreads and interphase nuclei
    • Johnson, M.D., III; Fresco, J.R. Third-strand in situ hybridization (TISH) to non-denatured metaphase spreads and interphase nuclei. Chromosoma 1999, 108, 181-189.
    • (1999) Chromosoma , vol.108 , pp. 181-189
    • Johnson III, M.D.1    Fresco, J.R.2
  • 79
    • 0037832279 scopus 로고    scopus 로고
    • Recognition of the DNA minor groove by pyrrole-imidazole polyamides
    • Dervan, P.B.; Edelson, B.S. Recognition of the DNA minor groove by pyrrole-imidazole polyamides. Curr. Opin. Struct. Biol. 2003, 13, 284-299.
    • (2003) Curr. Opin. Struct. Biol. , vol.13 , pp. 284-299
    • Dervan, P.B.1    Edelson, B.S.2
  • 80
    • 0042347478 scopus 로고    scopus 로고
    • U-Pin polyamide motif for recognition of the DNA minor groove
    • Heckel, A.; Dervan, P.B. U-Pin polyamide motif for recognition of the DNA minor groove. Chem. Eur. J. 2003, 9, 3353-3366.
    • (2003) Chem. Eur. J. , vol.9 , pp. 3353-3366
    • Heckel, A.1    Dervan, P.B.2
  • 81
    • 34548835765 scopus 로고    scopus 로고
    • α-Diaminobutyric acid-linked hairpin polyamides
    • Farkas, M.E.; Tsai, S.M.; Dervan, P.B. α-Diaminobutyric acid-linked hairpin polyamides. Bioorg. Med. Chem. 2007, 15, 6927-6936.
    • (2007) Bioorg. Med. Chem. , vol.15 , pp. 6927-6936
    • Farkas, M.E.1    Tsai, S.M.2    Dervan, P.B.3
  • 82
    • 84858378568 scopus 로고    scopus 로고
    • Enhancing the cellular uptake of Py-Im polyamides through next-generation aryl turns
    • Meier, J.L.; Montgomery, D.C.; Dervan, P.B. Enhancing the cellular uptake of Py-Im polyamides through next-generation aryl turns. Nucleic Acids Res. 2012, 40, 2345-2356.
    • (2012) Nucleic Acids Res. , vol.40 , pp. 2345-2356
    • Meier, J.L.1    Montgomery, D.C.2    Dervan, P.B.3
  • 83
    • 4143091493 scopus 로고    scopus 로고
    • Expanding the repertoire of heterocycle ring pairs for programmable minor groove DNA recognition
    • Marques, M.A.; Doss, R.M.; Foister, S.; Dervan, P.B. Expanding the repertoire of heterocycle ring pairs for programmable minor groove DNA recognition. J. Am. Chem. Soc. 2004, 126, 10339-10349.
    • (2004) J. Am. Chem. Soc. , vol.126 , pp. 10339-10349
    • Marques, M.A.1    Doss, R.M.2    Foister, S.3    Dervan, P.B.4
  • 84
    • 0037135997 scopus 로고    scopus 로고
    • Rapid solid-phase synthesis of DNA-binding pyrrole-imidazole polyamides
    • Krutzik, P.O.; Chamberlin, A.R. Rapid solid-phase synthesis of DNA-binding pyrrole-imidazole polyamides. Bioorg. Med. Chem. Lett. 2002, 12, 2129-2132.
    • (2002) Bioorg. Med. Chem. Lett. , vol.12 , pp. 2129-2132
    • Krutzik, P.O.1    Chamberlin, A.R.2
  • 85
    • 0036367814 scopus 로고    scopus 로고
    • Synthesis of DNA-binding polyamides. Robust solid-phase methods for coupling heterocyclic aromatic amino acids
    • Krutzik, P.O.; Chamberlin, A.R. Synthesis of DNA-binding polyamides. Robust solid-phase methods for coupling heterocyclic aromatic amino acids. Methods Mol. Biol. 2002, 201, 77-92.
    • (2002) Methods Mol. Biol. , vol.201 , pp. 77-92
    • Krutzik, P.O.1    Chamberlin, A.R.2
  • 86
    • 70149083228 scopus 로고    scopus 로고
    • Solution-phase synthesis of pyrrole-imidazole polyamides
    • Chenoweth, D.M.; Harki, D.A.; Dervan, P.B. Solution-phase synthesis of pyrrole-imidazole polyamides. J. Am. Chem. Soc. 2009, 131, 7175-7181.
    • (2009) J. Am. Chem. Soc. , vol.131 , pp. 7175-7181
    • Chenoweth, D.M.1    Harki, D.A.2    Dervan, P.B.3
  • 87
    • 33746795976 scopus 로고    scopus 로고
    • DNA sequence-specific polyamides alleviate transcription inhibition associated with long GAA center dot TTC repeats in Friedreich's ataxia
    • Burnett, R.; Melander, C.; Puckett, J.W.; Son, L.S.; Wells, R.B.; Dervan, P.B.; Gottesfeld, J.M. DNA sequence-specific polyamides alleviate transcription inhibition associated with long GAA center dot TTC repeats in Friedreich's ataxia. Proc. Nat. Acad. Sci. USA 2006, 103, 11497-11502.
    • (2006) Proc. Nat. Acad. Sci. USA , vol.103 , pp. 11497-11502
    • Burnett, R.1    Melander, C.2    Puckett, J.W.3    Son, L.S.4    Wells, R.B.5    Dervan, P.B.6    Gottesfeld, J.M.7
  • 89
    • 34547496561 scopus 로고    scopus 로고
    • Suppression of androgen receptor-mediated gene expression by a sequence-specific DNA-binding polyamide
    • Nickols, N.G.; Dervan, P.B. Suppression of androgen receptor-mediated gene expression by a sequence-specific DNA-binding polyamide. Proc. Nat. Acad. Sci. USA 2007, 104, 10418-10423.
    • (2007) Proc. Nat. Acad. Sci. USA , vol.104 , pp. 10418-10423
    • Nickols, N.G.1    Dervan, P.B.2
  • 92
    • 0029762862 scopus 로고    scopus 로고
    • Sequence-specific recognition of DNA by a major and minor groove binding ligands
    • Szewczyk, J.W.; Baird, E.E.; Dervan, P.B. Sequence-specific recognition of DNA by a major and minor groove binding ligands. Angew. Chem. Int. Ed. 1996, 35, 1487-1489.
    • (1996) Angew. Chem. Int. Ed. , vol.35 , pp. 1487-1489
    • Szewczyk, J.W.1    Baird, E.E.2    Dervan, P.B.3
  • 93
    • 0030013003 scopus 로고    scopus 로고
    • Cooperative triple-helix formation via a minor groove dimerization domain
    • Szewczyk, J.W.; Baird, E.E.; Dervan, P.B. Cooperative triple-helix formation via a minor groove dimerization domain. J. Am. Chem. Soc. 1996, 118, 6778-6779.
    • (1996) J. Am. Chem. Soc. , vol.118 , pp. 6778-6779
    • Szewczyk, J.W.1    Baird, E.E.2    Dervan, P.B.3
  • 94
    • 0000739713 scopus 로고    scopus 로고
    • Recognition of 16 base pairs in the minor groove of DNA by a pyrrole-imidazole polyamide dimer
    • Trauger, J.W.; Baird, E.E.; Dervan, P.B. Recognition of 16 base pairs in the minor groove of DNA by a pyrrole-imidazole polyamide dimer. J. Am. Chem. Soc. 1998, 120, 3534-3535.
    • (1998) J. Am. Chem. Soc. , vol.120 , pp. 3534-3535
    • Trauger, J.W.1    Baird, E.E.2    Dervan, P.B.3
  • 95
    • 0032986773 scopus 로고    scopus 로고
    • Tandem hairpin motif for recognition in the minor groove of DNA by pyrrole - Imidazole polyamides
    • Herman, D.M.; Baird, E.E.; Dervan, P.B. Tandem hairpin motif for recognition in the minor groove of DNA by pyrrole - imidazole polyamides. Chem. Eur. J. 1999, 5, 975-983.
    • (1999) Chem. Eur. J. , vol.5 , pp. 975-983
    • Herman, D.M.1    Baird, E.E.2    Dervan, P.B.3
  • 96
    • 0036335992 scopus 로고    scopus 로고
    • Search for the optimal linker in tandem hairpin polyamides
    • Kers, I.; Dervan, P.B. Search for the optimal linker in tandem hairpin polyamides. Bioorg. Med. Chem. 2002, 10, 3339-3349.
    • (2002) Bioorg. Med. Chem. , vol.10 , pp. 3339-3349
    • Kers, I.1    Dervan, P.B.2
  • 97
    • 22844438124 scopus 로고    scopus 로고
    • Functionalized head-to-head hairpin polyamides: Synthesis, double-stranded DNA-binding activity and affinity
    • Halby, L.; Ryabinin, V.A.; Sinyakov, A.N.; Boutorine, A.S. Functionalized head-to-head hairpin polyamides: Synthesis, double-stranded DNA-binding activity and affinity. Bioorg. Med. Chem. Lett. 2005, 15, 3720-3724.
    • (2005) Bioorg. Med. Chem. Lett. , vol.15 , pp. 3720-3724
    • Halby, L.1    Ryabinin, V.A.2    Sinyakov, A.N.3    Boutorine, A.S.4
  • 98
    • 0036255088 scopus 로고    scopus 로고
    • DNA binding properties of novel dansylated distamycin analogues in which the fluorophore is directly conjugated to the N-methylpyrrole carboxamide backbone
    • Bhattacharya, S.; Thomas, M. DNA binding properties of novel dansylated distamycin analogues in which the fluorophore is directly conjugated to the N-methylpyrrole carboxamide backbone. J. Biomol. Struct. Dyn. 2002, 19, 935-945.
    • (2002) J. Biomol. Struct. Dyn. , vol.19 , pp. 935-945
    • Bhattacharya, S.1    Thomas, M.2
  • 99
    • 0037419879 scopus 로고    scopus 로고
    • Sequence-specific fluorescence detection of double strand DNA
    • Rucker, V.C.; Foister, S.; Melander, C.; Dervan, P.B. Sequence-specific fluorescence detection of double strand DNA. J. Am. Chem. Soc. 2003, 125, 1195-1202.
    • (2003) J. Am. Chem. Soc. , vol.125 , pp. 1195-1202
    • Rucker, V.C.1    Foister, S.2    Melander, C.3    Dervan, P.B.4
  • 100
    • 28444464493 scopus 로고    scopus 로고
    • Sequence-specific fluorescence detection of DNA by polyamide-thiazole orange conjugates
    • Fechter, E.J.; Olenyuk, B.; Dervan, P.B. Sequence-specific fluorescence detection of DNA by polyamide-thiazole orange conjugates. J. Am. Chem. Soc. 2005, 127, 16685-16691.
    • (2005) J. Am. Chem. Soc. , vol.127 , pp. 16685-16691
    • Fechter, E.J.1    Olenyuk, B.2    Dervan, P.B.3
  • 102
    • 33847662824 scopus 로고    scopus 로고
    • Fluorescent sequence-specific dsDNA binding oligomers
    • Chenoweth, D.M.; Viger, A.; Dervan, P.B. Fluorescent sequence-specific dsDNA binding oligomers. J. Am. Chem. Soc. 2007, 129, 2216-2217.
    • (2007) J. Am. Chem. Soc. , vol.129 , pp. 2216-2217
    • Chenoweth, D.M.1    Viger, A.2    Dervan, P.B.3
  • 104
    • 55249093393 scopus 로고    scopus 로고
    • Quantitating the concentration of Py-Im polyamide-fluorescein conjugates in live cells
    • Hsu, C.F.; Dervan, P.B. Quantitating the concentration of Py-Im polyamide-fluorescein conjugates in live cells. Bioorg. Med. Chem. Lett. 2008, 18, 5851-5855.
    • (2008) Bioorg. Med. Chem. Lett. , vol.18 , pp. 5851-5855
    • Hsu, C.F.1    Dervan, P.B.2
  • 105
    • 76449116919 scopus 로고    scopus 로고
    • Cell permeability of Py-Im-polyamide-fluorescein conjugates: Influence of molecular size and Py/Im content
    • Nishijima, S.; Shinohara, K.; Bando, T.; Minoshima, M.; Kashiwazaki, G.; Sugiyama, H. Cell permeability of Py-Im-polyamide-fluorescein conjugates: Influence of molecular size and Py/Im content. Bioorg. Med. Chem. 2010, 18, 978-983.
    • (2010) Bioorg. Med. Chem. , vol.18 , pp. 978-983
    • Nishijima, S.1    Shinohara, K.2    Bando, T.3    Minoshima, M.4    Kashiwazaki, G.5    Sugiyama, H.6
  • 107
    • 0035875667 scopus 로고    scopus 로고
    • Specific targeting of insect and vertebrate telomeres with pyrrole and imidazole polyamides
    • Maeshima, K.; Janssen, S.; Laemmli, U.K. Specific targeting of insect and vertebrate telomeres with pyrrole and imidazole polyamides. EMBO J. 2001, 20, 3218-3228.
    • (2001) EMBO J. , vol.20 , pp. 3218-3228
    • Maeshima, K.1    Janssen, S.2    Laemmli, U.K.3
  • 108
    • 84867196824 scopus 로고    scopus 로고
    • Progress and prospects of pyrrole-imidazole polyamide-fluorophore conjugates as sequence-selective DNA probes
    • Vaijayanthi, T.; Bando, T.; Pandian, G.N.; Sugiyama, H. Progress and prospects of pyrrole-imidazole polyamide-fluorophore conjugates as sequence-selective DNA probes. ChemBioChem 2012, 13, 2170-2185.
    • (2012) ChemBioChem , vol.13 , pp. 2170-2185
    • Vaijayanthi, T.1    Bando, T.2    Pandian, G.N.3    Sugiyama, H.4
  • 110
    • 79955438209 scopus 로고    scopus 로고
    • An effective minor groove binder as a red fluorescent marker for live-cell DNA imaging and quantification
    • Peng, X.; Wu, T.; Fan, J.; Wang, J.; Zhang, S.; Song, F.; Sun, S. An effective minor groove binder as a red fluorescent marker for live-cell DNA imaging and quantification. Angew. Chem. Int. Ed. 2011, 50, 4180-4183.
    • (2011) Angew. Chem. Int. Ed. , vol.50 , pp. 4180-4183
    • Peng, X.1    Wu, T.2    Fan, J.3    Wang, J.4    Zhang, S.5    Song, F.6    Sun, S.7
  • 111
    • 3843142798 scopus 로고    scopus 로고
    • Regulation of gene expression with pyrrole-imidazole polyamides
    • Melander, C.; Burnett, R.; Gottesfeld, J.M. Regulation of gene expression with pyrrole-imidazole polyamides. J. Biotechnol. 2004, 112, 195-220.
    • (2004) J. Biotechnol. , vol.112 , pp. 195-220
    • Melander, C.1    Burnett, R.2    Gottesfeld, J.M.3
  • 113
    • 72249122756 scopus 로고    scopus 로고
    • Modifications at the C-terminus to improve pyrrole-imidazole polyamide activity in cell culture
    • Jacobs, C.S.; Dervan, P.B. Modifications at the C-terminus to improve pyrrole-imidazole polyamide activity in cell culture. J. Med. Chem. 2009, 52, 7380-7388.
    • (2009) J. Med. Chem. , vol.52 , pp. 7380-7388
    • Jacobs, C.S.1    Dervan, P.B.2
  • 115
    • 84860844719 scopus 로고    scopus 로고
    • Pharmacokinetics of Py-Im polyamides depend on architecture: Cyclic versus linear
    • Raskatov, J.A.; Hargrove, A.E.; So, A.Y.; Dervan, P.B. Pharmacokinetics of Py-Im polyamides depend on architecture: Cyclic versus linear. J. Am. Chem. Soc. 2012, 134, 7995-7999.
    • (2012) J. Am. Chem. Soc. , vol.134 , pp. 7995-7999
    • Raskatov, J.A.1    Hargrove, A.E.2    So, A.Y.3    Dervan, P.B.4
  • 116
    • 84887651702 scopus 로고    scopus 로고
    • Development of a new method for synthesis of tandem hairpin pyrrole-imidazole polyamide probes targeting human telomeres
    • Kawamoto, Y.; Bando, T.; Kamada, F.; Li, Y.; Hashiya, K.; Maeshima, K.; Sugiyama, H. Development of a new method for synthesis of tandem hairpin pyrrole-imidazole polyamide probes targeting human telomeres. J. Am. Chem. Soc. 2013, 135, 16468-16477.
    • (2013) J. Am. Chem. Soc. , vol.135 , pp. 16468-16477
    • Kawamoto, Y.1    Bando, T.2    Kamada, F.3    Li, Y.4    Hashiya, K.5    Maeshima, K.6    Sugiyama, H.7
  • 118
    • 0034658648 scopus 로고    scopus 로고
    • Light-Up Probes: Thiazole orange-conjugated peptide nucleic acid for detection of target nucleic acid in homogeneous solution
    • Svanvik, N.; Westman, G.; Wang, D.; Kubista, M. Light-Up Probes: Thiazole orange-conjugated peptide nucleic acid for detection of target nucleic acid in homogeneous solution. Anal. Biochem. 2000, 281, 26-35.
    • (2000) Anal. Biochem. , vol.281 , pp. 26-35
    • Svanvik, N.1    Westman, G.2    Wang, D.3    Kubista, M.4
  • 119
    • 0036188531 scopus 로고    scopus 로고
    • Stains, labels and detection strategies for nucleic acids assays
    • Kricka, L.J. Stains, labels and detection strategies for nucleic acids assays. Ann. Clin. Biochem. 2002, 39, 114-129.
    • (2002) Ann. Clin. Biochem. , vol.39 , pp. 114-129
    • Kricka, L.J.1
  • 120
    • 48649109120 scopus 로고    scopus 로고
    • Cyanine dyes for the detection of double stranded DNA
    • Hilal, H.; Taylor, J.A. Cyanine dyes for the detection of double stranded DNA. J. Biochem. Biophys. Meth. 2008, 70, 1104-1108.
    • (2008) J. Biochem. Biophys. Meth. , vol.70 , pp. 1104-1108
    • Hilal, H.1    Taylor, J.A.2
  • 121
    • 0028575410 scopus 로고
    • Imaging in the far-red with electronic light microscopy: Requirements and limitations
    • Cullander, C. Imaging in the far-red with electronic light microscopy: Requirements and limitations. J. Microsc. 1994, 176, 281-286.
    • (1994) J. Microsc. , vol.176 , pp. 281-286
    • Cullander, C.1
  • 122
    • 0038672776 scopus 로고    scopus 로고
    • A monomethine cyanine dye Cyan 40 for two-photon-excited fluorescence detection of nucleic acids and their visualization in live cells
    • Ohulchanskyy, T.Y.; Pudavar, H.E.; Yarmoluk, S.M.; Yashchuk, V.M.; Bergey, E.J.; Prasad, P.N. A monomethine cyanine dye Cyan 40 for two-photon-excited fluorescence detection of nucleic acids and their visualization in live cells. Photochem. Photobiol. 2003, 77, 138-145.
    • (2003) Photochem. Photobiol. , vol.77 , pp. 138-145
    • Ohulchanskyy, T.Y.1    Pudavar, H.E.2    Yarmoluk, S.M.3    Yashchuk, V.M.4    Bergey, E.J.5    Prasad, P.N.6
  • 123
    • 38149115308 scopus 로고    scopus 로고
    • The mechanism of benzothiazole styrylcyanine dyes binding with dsDNA: Studies by spectral-luminescent methods
    • Akbay, N.; Losytskyy, M.; Kovalska, V.; Balanda, A.; Yarmoluk, S. The mechanism of benzothiazole styrylcyanine dyes binding with dsDNA: Studies by spectral-luminescent methods. J. Fluoresc. 2008, 18, 139-147.
    • (2008) J. Fluoresc. , vol.18 , pp. 139-147
    • Akbay, N.1    Losytskyy, M.2    Kovalska, V.3    Balanda, A.4    Yarmoluk, S.5
  • 124
  • 125
    • 13644281098 scopus 로고    scopus 로고
    • Fluorescent homodimer styrylcyanines: Synthesis and spectral-luminescent studies in nucleic acids and protein complexes
    • Kovalska, V.B.; Kryvorotenko, D.V.; Balanda, A.O.; Losytskyy, M.Y.; Tokar, V.P.; Yarmoluk, S.M. Fluorescent homodimer styrylcyanines: Synthesis and spectral-luminescent studies in nucleic acids and protein complexes. Dyes Pigments 2005, 67, 47-54.
    • (2005) Dyes Pigments , vol.67 , pp. 47-54
    • Kovalska, V.B.1    Kryvorotenko, D.V.2    Balanda, A.O.3    Losytskyy, M.Y.4    Tokar, V.P.5    Yarmoluk, S.M.6
  • 126
    • 54949098931 scopus 로고    scopus 로고
    • Symmetric cyanine dyes for detecting nucleic acids
    • Yarmoluk, S.; Kovalska, V.; Losytskyy, M. Symmetric cyanine dyes for detecting nucleic acids. Biotech. Histochem. 2008, 83, 131-145.
    • (2008) Biotech. Histochem. , vol.83 , pp. 131-145
    • Yarmoluk, S.1    Kovalska, V.2    Losytskyy, M.3
  • 127
    • 0035167455 scopus 로고    scopus 로고
    • DNA probes using fluorescence resonance energy transfer (FRET): Designs and applications
    • Didenko, V.V. DNA probes using fluorescence resonance energy transfer (FRET): Designs and applications. BioTechniques 2001, 31, 1106-1121.
    • (2001) BioTechniques , vol.31 , pp. 1106-1121
    • Didenko, V.V.1
  • 128
    • 84890911657 scopus 로고    scopus 로고
    • Shape selective recognition of the DNA minor groove by hairpin polyamides
    • California Institute of Technology: Pasadena, CA, USA
    • Foister, S. Shape Selective Recognition of the DNA Minor Groove by Hairpin Polyamides. In Thesis for the Degree of Doctor of Philosophy; California Institute of Technology: Pasadena, CA, USA, 2003; pp. 129-127.
    • (2003) Thesis for the Degree of Doctor of Philosophy , pp. 129-127
    • Foister, S.1
  • 130
    • 84865060752 scopus 로고    scopus 로고
    • Poly(A)-targeting molecular beacons: Fluorescence resonance energy transfer-based in vitro quantitation and time-dependent imaging in live cells
    • Kim, M.Y.; Kim, J.; Hah, S.S. Poly(A)-targeting molecular beacons: Fluorescence resonance energy transfer-based in vitro quantitation and time-dependent imaging in live cells. Anal. Biochem. 2012, 429, 92-98.
    • (2012) Anal. Biochem. , vol.429 , pp. 92-98
    • Kim, M.Y.1    Kim, J.2    Hah, S.S.3
  • 131
    • 84860159772 scopus 로고    scopus 로고
    • New insights in the study of pyrene excimer fluorescence to characterize macromolecules and their supramolecular assemblies in solution
    • Duhamel, J. New insights in the study of pyrene excimer fluorescence to characterize macromolecules and their supramolecular assemblies in solution. Langmuir 2012, 28, 6527-6538.
    • (2012) Langmuir , vol.28 , pp. 6527-6538
    • Duhamel, J.1
  • 132
    • 79960037239 scopus 로고    scopus 로고
    • Oligo(2′-O-methylribonucleotides) containing insertions of 2′-bispyrenylmethylphosphoro-diamidate nucleoside derivatives as prospective fluorescent probes for RNA detection
    • Krasheninina, O.A.; Novopashina, D.S.; Venyaminova, A.G. Oligo(2′-O-methylribonucleotides) containing insertions of 2′-bispyrenylmethylphosphoro-diamidate nucleoside derivatives as prospective fluorescent probes for RNA detection. Russ. J. Bioorg. Chem. 2011, 37, 244-248.
    • (2011) Russ. J. Bioorg. Chem. , vol.37 , pp. 244-248
    • Krasheninina, O.A.1    Novopashina, D.S.2    Venyaminova, A.G.3
  • 135
    • 77955698528 scopus 로고    scopus 로고
    • Binary probes for nucleic acid analysis
    • Kolpashchikov, D.M. Binary probes for nucleic acid analysis. Chem. Rev. 2010, 110, 4709-4723.
    • (2010) Chem. Rev. , vol.110 , pp. 4709-4723
    • Kolpashchikov, D.M.1
  • 136
    • 84890919951 scopus 로고    scopus 로고
    • New ideas for in vivo detection of RNA
    • Serra, P.A., Ed.; InTech: Rijeka, Croatia
    • Novikova, I.V.; Afonin, K.A.; Leontis, N.B. New Ideas for in Vivo Detection of RNA. In Biosensors; Serra, P.A., Ed.; InTech: Rijeka, Croatia, 2010; pp. 127-150.
    • (2010) Biosensors , pp. 127-150
    • Novikova, I.V.1    Afonin, K.A.2    Leontis, N.B.3
  • 137
    • 84858703588 scopus 로고    scopus 로고
    • Fluorescent hybridization probes for nucleic acid detection
    • Guo, J.; Ju, J.; Turro, N.J. Fluorescent hybridization probes for nucleic acid detection. Anal. Bioanal. Chem. 2012, 402, 3115-3125.
    • (2012) Anal. Bioanal. Chem. , vol.402 , pp. 3115-3125
    • Guo, J.1    Ju, J.2    Turro, N.J.3
  • 138
    • 67849104948 scopus 로고    scopus 로고
    • Polyfluorophores on a DNA backbone: A multicolor set of labels excited at one wavelength
    • Teo, Y.N.; Wilson, J.N.; Kool, E.T. Polyfluorophores on a DNA backbone: A multicolor set of labels excited at one wavelength. J. Am. Chem. Soc. 2009, 131, 3923-3933.
    • (2009) J. Am. Chem. Soc. , vol.131 , pp. 3923-3933
    • Teo, Y.N.1    Wilson, J.N.2    Kool, E.T.3
  • 139
    • 84863837247 scopus 로고    scopus 로고
    • DNA polyfluorophores for real-time multicolor tracking of dynamic biological systems
    • Wang, S.; Guo, J.; Ono, T.; Kool, E.T. DNA polyfluorophores for real-time multicolor tracking of dynamic biological systems. Angew. Chem. Int. Ed. 2012, 51, 7176-7180.
    • (2012) Angew. Chem. Int. Ed. , vol.51 , pp. 7176-7180
    • Wang, S.1    Guo, J.2    Ono, T.3    Kool, E.T.4
  • 140
    • 79952771883 scopus 로고    scopus 로고
    • Multispectral labeling of antibodies with polyfluorophores on a DNA backbone and application in cellular imaging
    • Guo, J.; Wang, S.; Dai, N.; Teo, Y.N.; Kool, E.T. Multispectral labeling of antibodies with polyfluorophores on a DNA backbone and application in cellular imaging. Proc. Nat. Acad. Sci. USA 2011, 108, 3493-3498.
    • (2011) Proc. Nat. Acad. Sci. USA , vol.108 , pp. 3493-3498
    • Guo, J.1    Wang, S.2    Dai, N.3    Teo, Y.N.4    Kool, E.T.5
  • 141
    • 84864482895 scopus 로고    scopus 로고
    • DNA-multichromophore systems
    • Teo, Y.N.; Kool, E.T. DNA-multichromophore systems. Chem. Rev. 2012, 112, 4221-4245.
    • (2012) Chem. Rev. , vol.112 , pp. 4221-4245
    • Teo, Y.N.1    Kool, E.T.2
  • 142
    • 60149099385 scopus 로고    scopus 로고
    • Evolution and functions of long noncoding RNAs
    • Ponting, C.P.; Oliver, P.L.; Reik, W. Evolution and functions of long noncoding RNAs. Cell 2009, 136, 629-641.
    • (2009) Cell , vol.136 , pp. 629-641
    • Ponting, C.P.1    Oliver, P.L.2    Reik, W.3
  • 143
    • 0020417286 scopus 로고
    • Self-splicing RNA: Autoexcision and autocyclization of the ribosomal RNA intervening sequence of tetrahymena
    • Kruger, K.; Grabowski, P.J.; Zaug, A.J.; Sands, J.; Gottschling, D.E.; Cech, T.R. Self-splicing RNA: Autoexcision and autocyclization of the ribosomal RNA intervening sequence of tetrahymena. Cell 1982, 31, 147-157.
    • (1982) Cell , vol.31 , pp. 147-157
    • Kruger, K.1    Grabowski, P.J.2    Zaug, A.J.3    Sands, J.4    Gottschling, D.E.5    Cech, T.R.6
  • 144
    • 0021013526 scopus 로고
    • The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme
    • Guerrier-Takada, C.; Gardiner, K.; Marsh, T.; Pace, N.; Altman, S. The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme. Cell 1983, 35, 849-857.
    • (1983) Cell , vol.35 , pp. 849-857
    • Guerrier-Takada, C.1    Gardiner, K.2    Marsh, T.3    Pace, N.4    Altman, S.5
  • 145
    • 0022555863 scopus 로고
    • The role of antisense RNA in gene regulation
    • Green, P.J.; Pines, O.; Inouye, M. The role of antisense RNA in gene regulation. Annu. Rev. Biochem. 1986, 55, 569-597.
    • (1986) Annu. Rev. Biochem. , vol.55 , pp. 569-597
    • Green, P.J.1    Pines, O.2    Inouye, M.3
  • 146
    • 24644519490 scopus 로고    scopus 로고
    • The transcriptional landscape of the mammalian genome
    • The FANTOM Consortium
    • The FANTOM Consortium. The transcriptional landscape of the mammalian genome. Science 2005, 309, 1559-1563.
    • (2005) Science , vol.309 , pp. 1559-1563
  • 149
    • 33745036943 scopus 로고    scopus 로고
    • Accumulation of small murine minor satellite transcripts leads to impaired centromeric architecture and function
    • Bouzinba-Segard, H.; Guais, A.; Francastel, C. Accumulation of small murine minor satellite transcripts leads to impaired centromeric architecture and function. Proc. Nat. Acad. Sci. USA 2006, 103, 8709-8714.
    • (2006) Proc. Nat. Acad. Sci. USA , vol.103 , pp. 8709-8714
    • Bouzinba-Segard, H.1    Guais, A.2    Francastel, C.3
  • 150
  • 152
    • 67849104764 scopus 로고    scopus 로고
    • Satellite DNA spatial localization and transcriptional activity in mouse embryonic E-14 and IOUD2 stem cells
    • Enukashvily, N.I.; Malashicheva, A.B.; Waisertreiger, I.S.R. Satellite DNA spatial localization and transcriptional activity in mouse embryonic E-14 and IOUD2 stem cells. Cytogenet. Genome Res. 2009, 124, 277-287.
    • (2009) Cytogenet. Genome Res. , vol.124 , pp. 277-287
    • Enukashvily, N.I.1    Malashicheva, A.B.2    Waisertreiger, I.S.R.3
  • 153
    • 84871202517 scopus 로고    scopus 로고
    • Transcription in the maintenance of centromere chromatin identity
    • Chan, F.L.; Wong, L.H. Transcription in the maintenance of centromere chromatin identity. Nucleic Acids Res. 2012, 40, 11178-11188.
    • (2012) Nucleic Acids Res. , vol.40 , pp. 11178-11188
    • Chan, F.L.1    Wong, L.H.2
  • 155
    • 84870158714 scopus 로고    scopus 로고
    • RNA as a structural and regulatory component of the centromere
    • Gent, J.I.; Dawe, R.K. RNA as a structural and regulatory component of the centromere. Annu. Rev. Genet. 2012, 46, 443-453.
    • (2012) Annu. Rev. Genet. , vol.46 , pp. 443-453
    • Gent, J.I.1    Dawe, R.K.2
  • 156
    • 84864881695 scopus 로고    scopus 로고
    • Pericentric and centromeric transcription: A perfect balance required
    • Hall, L.E.; Mitchell, S.E.; O'Neill, R.J. Pericentric and centromeric transcription: A perfect balance required. Chromosome Res. 2012, 20, 535-546.
    • (2012) Chromosome Res. , vol.20 , pp. 535-546
    • Hall, L.E.1    Mitchell, S.E.2    O'Neill, R.J.3
  • 157
    • 84869112037 scopus 로고    scopus 로고
    • Genetic encoding of fluorescent RNA ensures a bright future for visualizing nucleic acid dynamics
    • Dictenberg, J. Genetic encoding of fluorescent RNA ensures a bright future for visualizing nucleic acid dynamics. Trends Biotechnol. 2012, 30, 621-626.
    • (2012) Trends Biotechnol. , vol.30 , pp. 621-626
    • Dictenberg, J.1
  • 158
    • 65449131152 scopus 로고    scopus 로고
    • Imaging intracellular RNA distribution and dynamics in living cells
    • Tyagi, S. Imaging intracellular RNA distribution and dynamics in living cells. Nat. Methods 2009, 6, 331-338.
    • (2009) Nat. Methods , vol.6 , pp. 331-338
    • Tyagi, S.1
  • 160
    • 0033519623 scopus 로고    scopus 로고
    • Localization and anchoring of mRNA in budding yeast
    • Beach, D.L.; Salmon, E.D.; Bloom, K. Localization and anchoring of mRNA in budding yeast. Curr. Biol. 1999, 9, S569-S561.
    • (1999) Curr. Biol. , vol.9
    • Beach, D.L.1    Salmon, E.D.2    Bloom, K.3
  • 161
    • 34250219568 scopus 로고    scopus 로고
    • A genomic integration method to visualize localization of endogenous mRNAs in living yeast
    • Haim, L.; Zipor, G.; Aronov, S.; Gerst, J.E. A genomic integration method to visualize localization of endogenous mRNAs in living yeast. Nat. Methods 2007, 4, 409-412.
    • (2007) Nat. Methods , vol.4 , pp. 409-412
    • Haim, L.1    Zipor, G.2    Aronov, S.3    Gerst, J.E.4
  • 162
    • 67651151407 scopus 로고    scopus 로고
    • Fluorescent probes for live-cell RNA detection
    • Bao, G.; Rhee, W.J.; Tsourkas, A. Fluorescent probes for live-cell RNA detection. Ann. Rev. Biomed. Eng. 2009, 11, 25-47.
    • (2009) Ann. Rev. Biomed. Eng. , vol.11 , pp. 25-47
    • Bao, G.1    Rhee, W.J.2    Tsourkas, A.3
  • 163
    • 0037282642 scopus 로고    scopus 로고
    • Visualizing RNA molecules inside the nucleus of living cells
    • Dirks, R.W.; Molenaar, C.; Tanke, H.J. Visualizing RNA molecules inside the nucleus of living cells. Methods 2003, 29, 51-57.
    • (2003) Methods , vol.29 , pp. 51-57
    • Dirks, R.W.1    Molenaar, C.2    Tanke, H.J.3
  • 164
    • 84883635352 scopus 로고    scopus 로고
    • Nanostructured Probes for in Vivo Gene Detection
    • Fuchs, H., Gratzel, M., Krug, H., Schmid, G., Vogel, V., Waser, R., Eds.; Wiley-VCH Verlag GmbH & Co. KGaA: Chichester, UK, (Nanomedicine)
    • Bao, G.; Santangelo, P.; Nitin, N.; Rhee, W.J. Nanostructured Probes for in Vivo Gene Detection. In Nanotechnology; Fuchs, H., Gratzel, M., Krug, H., Schmid, G., Vogel, V., Waser, R., Eds.; Wiley-VCH Verlag GmbH & Co. KGaA: Chichester, UK, 2010; Volume 5 (Nanomedicine), pp. 143-165.
    • (2010) Nanotechnology , vol.5 , pp. 143-165
    • Bao, G.1    Santangelo, P.2    Nitin, N.3    Rhee, W.J.4
  • 165
    • 0035928695 scopus 로고    scopus 로고
    • Linear fluorescent oligonucleotide probes with an acridine quencher generate a signal upon hybridisation
    • Ranasinghe, R.T.; Brown, L.J.; Brown, T. Linear fluorescent oligonucleotide probes with an acridine quencher generate a signal upon hybridisation. Chem. Commun. 2001, 1480-1481.
    • (2001) Chem. Commun. , pp. 1480-1481
    • Ranasinghe, R.T.1    Brown, L.J.2    Brown, T.3
  • 166
    • 79954998237 scopus 로고    scopus 로고
    • Development of a system to sensitively and specifically visualize c-fos mRNA in living cells using bispyrene-modified RNA probes
    • Waki, R.; Yamayoshi, A.; Kobori, A.; Murakami, A. Development of a system to sensitively and specifically visualize c-fos mRNA in living cells using bispyrene-modified RNA probes. Chem. Commun. 2011, 47, 4204-4206.
    • (2011) Chem. Commun. , vol.47 , pp. 4204-4206
    • Waki, R.1    Yamayoshi, A.2    Kobori, A.3    Murakami, A.4
  • 167
    • 44949157958 scopus 로고    scopus 로고
    • Thiazole orange and Cy3: Improvement of fluorescent DNA probes with use of short range electron transfer
    • Menacher, F.; Rubner, M.; Berndl, S.; Wagenknecht, H.-A. Thiazole orange and Cy3: Improvement of fluorescent DNA probes with use of short range electron transfer. J. Org. Chem. 2008, 73, 4263-4266.
    • (2008) J. Org. Chem. , vol.73 , pp. 4263-4266
    • Menacher, F.1    Rubner, M.2    Berndl, S.3    Wagenknecht, H.-A.4
  • 168
    • 77952352944 scopus 로고    scopus 로고
    • Designed thiazole orange nucleotides for the synthesis of single labelled oligonucleotides that fluoresce upon matched hybridization
    • Bethge, L.; Singh, I.; Seitz, O. Designed thiazole orange nucleotides for the synthesis of single labelled oligonucleotides that fluoresce upon matched hybridization. Org. Biomol. Chem. 2010, 8, 2439-2448.
    • (2010) Org. Biomol. Chem. , vol.8 , pp. 2439-2448
    • Bethge, L.1    Singh, I.2    Seitz, O.3
  • 169
    • 84861428195 scopus 로고    scopus 로고
    • "dNA traffic lights": Concept of wavelength-shifting DNA probes and application in an aptasensor
    • Holzhauser, C.; Wagenknecht, H.A. "DNA traffic lights": Concept of wavelength-shifting DNA probes and application in an aptasensor. ChemBioChem 2012, 13, 1136-1138.
    • (2012) ChemBioChem , vol.13 , pp. 1136-1138
    • Holzhauser, C.1    Wagenknecht, H.A.2
  • 170
    • 77149166953 scopus 로고    scopus 로고
    • Synthesis and optical properties of cyanine dyes as fluorescent DNA base substitutions for live cell imaging
    • Holzhauser, C.; Berndl, S.; Menacher, F.; Breunig, M.; Gopferich, A.; Wagenknecht, H.-A. Synthesis and optical properties of cyanine dyes as fluorescent DNA base substitutions for live cell imaging. Eur. J. Org. Chem. 2010, 2010, 1239-1248.
    • (2010) Eur. J. Org. Chem. , vol.2010 , pp. 1239-1248
    • Holzhauser, C.1    Berndl, S.2    Menacher, F.3    Breunig, M.4    Gopferich, A.5    Wagenknecht, H.-A.6
  • 172
    • 77049104967 scopus 로고    scopus 로고
    • An efficient fluorescence resonance energy transfer (FRET) between pyrene and perylene assembled in a DNA duplex and its potential for discriminating single-base changes
    • Kashida, H.; Takatsu, T.; Sekiguchi, K.; Asanuma, H. An efficient fluorescence resonance energy transfer (FRET) between pyrene and perylene assembled in a DNA duplex and its potential for discriminating single-base changes. Chem. Eur. J. 2010, 16, 2479-2486.
    • (2010) Chem. Eur. J. , vol.16 , pp. 2479-2486
    • Kashida, H.1    Takatsu, T.2    Sekiguchi, K.3    Asanuma, H.4
  • 173
    • 84872555490 scopus 로고    scopus 로고
    • Development of a robust model system of FRET using base surrogates tethering fluorophores for strict control of their position and orientation within DNA duplex
    • Kato, T.; Kashida, H.; Kishida, H.; Yada, H.; Okamoto, H.; Asanuma, H. Development of a robust model system of FRET using base surrogates tethering fluorophores for strict control of their position and orientation within DNA duplex. J. Am. Chem. Soc. 2012, 135, 741-750.
    • (2012) J. Am. Chem. Soc. , vol.135 , pp. 741-750
    • Kato, T.1    Kashida, H.2    Kishida, H.3    Yada, H.4    Okamoto, H.5    Asanuma, H.6
  • 174
    • 50249187299 scopus 로고    scopus 로고
    • Hybridization-sensitive on-off DNA probe: Application of the exciton coupling effect to effective fluorescence quenching
    • Ikeda, S.; Okamoto, A. Hybridization-sensitive on-off DNA probe: Application of the exciton coupling effect to effective fluorescence quenching. Chem. Asian J. 2008, 3, 958-968.
    • (2008) Chem. Asian J. , vol.3 , pp. 958-968
    • Ikeda, S.1    Okamoto, A.2
  • 175
    • 67649211935 scopus 로고    scopus 로고
    • Hybridization-sensitive fluorescent probe for long-term monitoring of intracellular RNA
    • Kubota, T.; Ikeda, S.; Yanagisawa, H.; Yuki, M.; Okamoto, A. Hybridization-sensitive fluorescent probe for long-term monitoring of intracellular RNA. Bioconjug. Chem. 2009, 20, 1256-1261.
    • (2009) Bioconjug. Chem. , vol.20 , pp. 1256-1261
    • Kubota, T.1    Ikeda, S.2    Yanagisawa, H.3    Yuki, M.4    Okamoto, A.5
  • 176
    • 0344442270 scopus 로고    scopus 로고
    • Thiazole orange as fluorescent universal base in peptide nucleic acids
    • Kohler, O.; Seitz, O. Thiazole orange as fluorescent universal base in peptide nucleic acids. Chem. Commun. 2003, 2938-2939.
    • (2003) Chem. Commun. , pp. 2938-2939
    • Kohler, O.1    Seitz, O.2
  • 177
    • 12344280276 scopus 로고    scopus 로고
    • Forced intercalation probes (FIT probes): Thiazole orange as a fluorescent base in peptide nucleic acids for homogeneous single-nucleotide- polymorphism detection
    • Kohler, O.; Jarikote, D.V.; Seitz, O. Forced intercalation probes (FIT probes): Thiazole orange as a fluorescent base in peptide nucleic acids for homogeneous single-nucleotide-polymorphism detection. ChemBioChem 2005, 6, 69-77.
    • (2005) ChemBioChem , vol.6 , pp. 69-77
    • Kohler, O.1    Jarikote, D.V.2    Seitz, O.3
  • 179
    • 84867508726 scopus 로고    scopus 로고
    • PNA FIT-probes for the dual color imaging of two viral mRNA targets in influenza H1N1 infected live cells
    • Kummer, S.; Knoll, A.; Socher, E.; Bethge, L.; Herrmann, A.; Seitz, O. PNA FIT-probes for the dual color imaging of two viral mRNA targets in influenza H1N1 infected live cells. Bioconjug. Chem. 2012, 23, 2051-2060.
    • (2012) Bioconjug. Chem. , vol.23 , pp. 2051-2060
    • Kummer, S.1    Knoll, A.2    Socher, E.3    Bethge, L.4    Herrmann, A.5    Seitz, O.6
  • 180
    • 0029670262 scopus 로고    scopus 로고
    • Molecular beacons: Probes that fluoresce upon hybridization
    • Tyagi, S.; Kramer, F.R. Molecular beacons: Probes that fluoresce upon hybridization. Nat. Biotechnol. 1996, 14, 303-308.
    • (1996) Nat. Biotechnol. , vol.14 , pp. 303-308
    • Tyagi, S.1    Kramer, F.R.2
  • 182
    • 84858698835 scopus 로고    scopus 로고
    • Recent trends in molecular beacon design and applications
    • Huang, K.; Martí, A. Recent trends in molecular beacon design and applications. Anal. Bioanal. Chem. 2012, 402, 3091-3102.
    • (2012) Anal. Bioanal. Chem. , vol.402 , pp. 3091-3102
    • Huang, K.1    Martí, A.2
  • 183
    • 0036885130 scopus 로고    scopus 로고
    • Hybridization of 2′-O-methyl and 2′-deoxy molecular beacons to RNA and DNA targets
    • Tsourkas, A.; Behlke, M.A.; Bao, G. Hybridization of 2′-O-methyl and 2′-deoxy molecular beacons to RNA and DNA targets. Nucleic Acids Res. 2002, 30, 5168-5174.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 5168-5174
    • Tsourkas, A.1    Behlke, M.A.2    Bao, G.3
  • 184
    • 0036798115 scopus 로고    scopus 로고
    • Structure-function relationships of shared-stem and conventional molecular beacons
    • Tsourkas, A.; Behlke, M.A.; Bao, G. Structure-function relationships of shared-stem and conventional molecular beacons. Nucleic Acids Res. 2002, 30, 4208-4215.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 4208-4215
    • Tsourkas, A.1    Behlke, M.A.2    Bao, G.3
  • 185
    • 0037440736 scopus 로고    scopus 로고
    • Hybridization kinetics and thermodynamics of molecular beacons
    • Tsourkas, A.; Behlke, M.A.; Rose, S.D.; Bao, G. Hybridization kinetics and thermodynamics of molecular beacons. Nucleic Acids Res. 2003, 31, 1319-1330.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 1319-1330
    • Tsourkas, A.1    Behlke, M.A.2    Rose, S.D.3    Bao, G.4
  • 186
    • 77953968712 scopus 로고    scopus 로고
    • Slow non-specific accumulation of 2′-deoxy and 2′-O-methyl oligonucleotide probes at mitochondria in live cells
    • Rhee, W.J.; Bao, G. Slow non-specific accumulation of 2′-deoxy and 2′-O-methyl oligonucleotide probes at mitochondria in live cells. Nucleic Acids Res. 2010, 38, e109.
    • (2010) Nucleic Acids Res. , vol.38
    • Rhee, W.J.1    Bao, G.2
  • 187
    • 65849507275 scopus 로고    scopus 로고
    • Simultaneous detection of mRNA and protein stem cell markers in live cells
    • Rhee, W.J.; Bao, G. Simultaneous detection of mRNA and protein stem cell markers in live cells. BMC Biotechnol. 2009, 9, 30.
    • (2009) BMC Biotechnol. , vol.9 , pp. 30
    • Rhee, W.J.1    Bao, G.2
  • 188
    • 77955788881 scopus 로고    scopus 로고
    • Ratiometric bimolecular beacons for the sensitive detection of RNA in single living cells
    • Chen, A.K.; Davydenko, O.; Behlke, M.A.; Tsourkas, A. Ratiometric bimolecular beacons for the sensitive detection of RNA in single living cells. Nucleic Acids Res. 2010, 38, e148.
    • (2010) Nucleic Acids Res. , vol.38
    • Chen, A.K.1    Davydenko, O.2    Behlke, M.A.3    Tsourkas, A.4
  • 190
    • 15244353779 scopus 로고    scopus 로고
    • Using molecular beacon to monitor activity of E. Coli DNA ligase
    • Liu, L.; Tang, Z.; Wang, K.; Tan, W.; Li, J.; Guo, Q.; Meng, X.; Ma, C. Using molecular beacon to monitor activity of E. coli DNA ligase. Analyst 2005, 130, 350-357.
    • (2005) Analyst , vol.130 , pp. 350-357
    • Liu, L.1    Tang, Z.2    Wang, K.3    Tan, W.4    Li, J.5    Guo, Q.6    Meng, X.7    Ma, C.8
  • 191
    • 4644239154 scopus 로고    scopus 로고
    • Real-time monitoring of nucleic acid ligation in homogenous solutions using molecular beacons
    • Tang, Z.; Wang, K.; Tan, W.; Li, J.; Liu, L.; Guo, Q.; Meng, X.; Ma, C.; Huang, S. Real-time monitoring of nucleic acid ligation in homogenous solutions using molecular beacons. Nucleic Acids Res. 2003, 31, e148.
    • (2003) Nucleic Acids Res. , vol.31
    • Tang, Z.1    Wang, K.2    Tan, W.3    Li, J.4    Liu, L.5    Guo, Q.6    Meng, X.7    Ma, C.8    Huang, S.9
  • 192
    • 33947323168 scopus 로고    scopus 로고
    • Real-time monitoring of restriction endonuclease activity using molecular beacon
    • Ma, C.; Tang, Z.; Wang, K.; Tan, W.; Yang, X.; Li, W.; Li, Z.; Lv, X. Real-time monitoring of restriction endonuclease activity using molecular beacon. Anal. Biochem. 2007, 363, 294-296.
    • (2007) Anal. Biochem. , vol.363 , pp. 294-296
    • Ma, C.1    Tang, Z.2    Wang, K.3    Tan, W.4    Yang, X.5    Li, W.6    Li, Z.7    Lv, X.8
  • 193
    • 34548801267 scopus 로고    scopus 로고
    • Real-time monitoring of nucleic acid dephosphorylation by using molecular beacons
    • Ma, C.; Tang, Z.; Wang, K.; Tan, W.; Yang, X.; Li, W.; Li, Z.; Li, H.; Lv, X. Real-time monitoring of nucleic acid dephosphorylation by using molecular beacons. ChemBioChem 2007, 8, 1487-1490.
    • (2007) ChemBioChem , vol.8 , pp. 1487-1490
    • Ma, C.1    Tang, Z.2    Wang, K.3    Tan, W.4    Yang, X.5    Li, W.6    Li, Z.7    Li, H.8    Lv, X.9
  • 194
    • 80052376692 scopus 로고    scopus 로고
    • A transformer of molecular beacon for sensitive and real-time detection of phosphatases with effective inhibition of the false positive signals
    • Zhang, C.; Su, X.; Liang, Y.; Zhu, X.; Song, C.; Zhao, M. A transformer of molecular beacon for sensitive and real-time detection of phosphatases with effective inhibition of the false positive signals. Biosens. Bioelectron. 2011, 28, 13-16.
    • (2011) Biosens. Bioelectron. , vol.28 , pp. 13-16
    • Zhang, C.1    Su, X.2    Liang, Y.3    Zhu, X.4    Song, C.5    Zhao, M.6
  • 196
    • 33846999711 scopus 로고    scopus 로고
    • Hairpin fluorescence DNA probe for real-time monitoring of DNA methylation
    • Li, J.; Yan, H.; Wang, K.; Tan, W.; Zhou, X. Hairpin fluorescence DNA probe for real-time monitoring of DNA methylation. Anal. Chem. 2007, 79, 1050-1056.
    • (2007) Anal. Chem. , vol.79 , pp. 1050-1056
    • Li, J.1    Yan, H.2    Wang, K.3    Tan, W.4    Zhou, X.5
  • 197
    • 26444596631 scopus 로고    scopus 로고
    • Real-time investigation of nucleic acids phosphorylation process using molecular beacons
    • Tang, Z.; Wang, K.; Tan, W.; Ma, C.; Li, J.; Liu, L.; Guo, Q.; Meng, X. Real-time investigation of nucleic acids phosphorylation process using molecular beacons. Nucleic Acids Res. 2005, 33, e97.
    • (2005) Nucleic Acids Res. , vol.33
    • Tang, Z.1    Wang, K.2    Tan, W.3    Ma, C.4    Li, J.5    Liu, L.6    Guo, Q.7    Meng, X.8
  • 198
    • 36148971238 scopus 로고    scopus 로고
    • A novel kinase-based ATP assay using molecular beacon
    • Ma, C.; Yang, X.; Wang, K.; Tang, Z.; Li, W.; Tan, W.; Lv, X. A novel kinase-based ATP assay using molecular beacon. Anal. Biochem. 2008, 372, 131-133.
    • (2008) Anal. Biochem. , vol.372 , pp. 131-133
    • Ma, C.1    Yang, X.2    Wang, K.3    Tang, Z.4    Li, W.5    Tan, W.6    Lv, X.7
  • 199
    • 2442448280 scopus 로고    scopus 로고
    • Unambiguous detection of target DNAs by excimer-monomer switching molecular beacons
    • Fujimoto, K.; Shimizu, H.; Inouye, M. Unambiguous detection of target DNAs by excimer-monomer switching molecular beacons. J. Org. Chem. 2004, 69, 3271-3275.
    • (2004) J. Org. Chem. , vol.69 , pp. 3271-3275
    • Fujimoto, K.1    Shimizu, H.2    Inouye, M.3
  • 200
    • 78650853301 scopus 로고    scopus 로고
    • Pyrene-excimer probes based on the hybridization chain reaction for the detection of nucleic acids in complex biological fluids
    • Huang, J.; Wu, Y.; Chen, Y.; Zhu, Z.; Yang, X.; Yang, C.J.; Wang, K.; Tan, W. Pyrene-excimer probes based on the hybridization chain reaction for the detection of nucleic acids in complex biological fluids. Angew. Chem. Int. Ed. 2011, 50, 401-404.
    • (2011) Angew. Chem. Int. Ed. , vol.50 , pp. 401-404
    • Huang, J.1    Wu, Y.2    Chen, Y.3    Zhu, Z.4    Yang, X.5    Yang, C.J.6    Wang, K.7    Tan, W.8
  • 201
    • 38049075341 scopus 로고    scopus 로고
    • Bis-pyrene-labeled molecular beacon: A monomer-excimer switching probe for the detection of DNA base alteration
    • Yamana, K.; Ohshita, Y.; Fukunaga, Y.; Nakamura, M.; Maruyama, A. Bis-pyrene-labeled molecular beacon: A monomer-excimer switching probe for the detection of DNA base alteration. Bioorg. Med. Chem. 2008, 16, 78-83.
    • (2008) Bioorg. Med. Chem. , vol.16 , pp. 78-83
    • Yamana, K.1    Ohshita, Y.2    Fukunaga, Y.3    Nakamura, M.4    Maruyama, A.5
  • 202
    • 83355177528 scopus 로고    scopus 로고
    • A two-color, self-controlled molecular beacon
    • Biner, S.M.; Haner, R. A two-color, self-controlled molecular beacon. ChemBioChem 2011, 12, 2733-2736.
    • (2011) ChemBioChem , vol.12 , pp. 2733-2736
    • Biner, S.M.1    Haner, R.2
  • 203
    • 84870529271 scopus 로고    scopus 로고
    • Tricolour fluorescence detection of sequence-specific DNA with a new molecular beacon and a nucleic acid dye TOTO-3
    • Xiang, D.; Zhang, C.; Chen, L.; Ji, X.; He, Z. Tricolour fluorescence detection of sequence-specific DNA with a new molecular beacon and a nucleic acid dye TOTO-3. Analyst 2012, 137, 5898-5905.
    • (2012) Analyst , vol.137 , pp. 5898-5905
    • Xiang, D.1    Zhang, C.2    Chen, L.3    Ji, X.4    He, Z.5
  • 204
    • 33746870756 scopus 로고    scopus 로고
    • Hybrid molecular probe for nucleic acid analysis in biological samples
    • Yang, C.J.; Martinez, K.; Lin, H.; Tan, W. Hybrid molecular probe for nucleic acid analysis in biological samples. J. Am. Chem. Soc. 2006, 128, 9986-9987.
    • (2006) J. Am. Chem. Soc. , vol.128 , pp. 9986-9987
    • Yang, C.J.1    Martinez, K.2    Lin, H.3    Tan, W.4
  • 205
  • 206
    • 75149141275 scopus 로고    scopus 로고
    • Red-white-blue emission switching molecular beacons: Ratiometric multicolour DNA hybridization probes
    • Varghese, R.; Wagenknecht, H.-A. Red-white-blue emission switching molecular beacons: Ratiometric multicolour DNA hybridization probes. Org. Biomol. Chem. 2010, 8, 526-528.
    • (2010) Org. Biomol. Chem. , vol.8 , pp. 526-528
    • Varghese, R.1    Wagenknecht, H.-A.2
  • 208
    • 84863210371 scopus 로고    scopus 로고
    • Quencher-free molecular beacon tethering 7-hydroxycoumarin detects targets through protonation/deprotonation
    • Kashida, H.; Yamaguchi, K.; Hara, Y.; Asanuma, H. Quencher-free molecular beacon tethering 7-hydroxycoumarin detects targets through protonation/ deprotonation. Bioorg. Med. Chem. 2012, 20, 4310-4315.
    • (2012) Bioorg. Med. Chem. , vol.20 , pp. 4310-4315
    • Kashida, H.1    Yamaguchi, K.2    Hara, Y.3    Asanuma, H.4
  • 209
    • 79952817291 scopus 로고    scopus 로고
    • Discrimination of the false-positive signals of molecular beacons by combination of heat inactivation and using single walled carbon nanotubes
    • Su, X.; Zhang, C.; Zhao, M. Discrimination of the false-positive signals of molecular beacons by combination of heat inactivation and using single walled carbon nanotubes. Biosens. Bioelectron. 2011, 26, 3596-3601.
    • (2011) Biosens. Bioelectron. , vol.26 , pp. 3596-3601
    • Su, X.1    Zhang, C.2    Zhao, M.3
  • 211
    • 37549007569 scopus 로고    scopus 로고
    • Superior structure stability and selectivity of hairpin nucleic acid probes with an L-DNA stem
    • Kim, Y.; Yang, C.J.; Tan, W. Superior structure stability and selectivity of hairpin nucleic acid probes with an L-DNA stem. Nucleic Acids Res. 2007, 35, 7279-7287.
    • (2007) Nucleic Acids Res. , vol.35 , pp. 7279-7287
    • Kim, Y.1    Yang, C.J.2    Tan, W.3
  • 212
    • 34547638949 scopus 로고    scopus 로고
    • Synthesis and investigation of deoxyribonucleic acid/locked nucleic acid chimeric molecular beacons
    • Yang, C.J.; Wang, L.; Wu, Y.; Kim, Y.; Medley, C.D.; Lin, H.; Tan, W. Synthesis and investigation of deoxyribonucleic acid/locked nucleic acid chimeric molecular beacons. Nucleic Acids Res. 2007, 35, 4030-4041.
    • (2007) Nucleic Acids Res. , vol.35 , pp. 4030-4041
    • Yang, C.J.1    Wang, L.2    Wu, Y.3    Kim, Y.4    Medley, C.D.5    Lin, H.6    Tan, W.7
  • 214
    • 66149149445 scopus 로고    scopus 로고
    • Locked nucleic acid based beacons for surface interaction studies and biosensor development
    • Martinez, K.; Estevez, M.C.; Wu, Y.; Phillips, J.A.; Medley, C.D.; Tan, W. Locked nucleic acid based beacons for surface interaction studies and biosensor development. Anal. Chem. 2009, 81, 3448-3454.
    • (2009) Anal. Chem. , vol.81 , pp. 3448-3454
    • Martinez, K.1    Estevez, M.C.2    Wu, Y.3    Phillips, J.A.4    Medley, C.D.5    Tan, W.6
  • 215
    • 75649136910 scopus 로고    scopus 로고
    • Sub-cellular trafficking and functionality of 2′-O-methyl and 2′-O-methyl-phosphorothioate molecular beacons
    • Chen, A.K.; Behlke, M.A.; Tsourkas, A. Sub-cellular trafficking and functionality of 2′-O-methyl and 2′-O-methyl-phosphorothioate molecular beacons. Nucleic Acids Res. 2009, 37, e149.
    • (2009) Nucleic Acids Res. , vol.37
    • Chen, A.K.1    Behlke, M.A.2    Tsourkas, A.3
  • 216
    • 84883723881 scopus 로고    scopus 로고
    • A targeted, self-delivered, and photocontrolled molecular meacon for mRNA detection in living cells
    • Qiu, L.; Wu, C.; You, M.; Han, D.; Chen, T.; Zhu, G.; Jiang, J.; Yu, R.; Tan, W. A targeted, self-delivered, and photocontrolled molecular meacon for mRNA detection in living cells. J. Am. Chem. Soc. 2013, 135, 12952-12955.
    • (2013) J. Am. Chem. Soc. , vol.135 , pp. 12952-12955
    • Qiu, L.1    Wu, C.2    You, M.3    Han, D.4    Chen, T.5    Zhu, G.6    Jiang, J.7    Yu, R.8    Tan, W.9
  • 217
    • 79952348397 scopus 로고    scopus 로고
    • Real time monitoring of endogenous cytoplasmic mRNA using linear antisense 2′-O-methyl RNA probes in living cells
    • Okabe, K.; Harada, Y.; Zhang, J.; Tadakuma, H.; Tani, T.; Funatsu, T. Real time monitoring of endogenous cytoplasmic mRNA using linear antisense 2′-O-methyl RNA probes in living cells. Nucleic Acids Res. 2011, 39, e20.
    • (2011) Nucleic Acids Res. , vol.39
    • Okabe, K.1    Harada, Y.2    Zhang, J.3    Tadakuma, H.4    Tani, T.5    Funatsu, T.6
  • 220
    • 0037151617 scopus 로고    scopus 로고
    • Imaging of RNA in bacteria with self-ligating quenched probes
    • Sando, S.; Kool, E.T. Imaging of RNA in bacteria with self-ligating quenched probes. J. Am. Chem. Soc. 2002, 124, 9686-9687.
    • (2002) J. Am. Chem. Soc. , vol.124 , pp. 9686-9687
    • Sando, S.1    Kool, E.T.2
  • 221
    • 7444243906 scopus 로고    scopus 로고
    • Destabilizing universal linkers for signal amplification in self-ligating probes for RNA
    • Abe, H.; Kool, E.T. Destabilizing universal linkers for signal amplification in self-ligating probes for RNA. J. Am. Chem. Soc. 2004, 126, 13980-13986.
    • (2004) J. Am. Chem. Soc. , vol.126 , pp. 13980-13986
    • Abe, H.1    Kool, E.T.2
  • 222
    • 31044444366 scopus 로고    scopus 로고
    • Flow cytometric detection of specific RNAs in native human cells with quenched autoligating FRET probes
    • Abe, H.; Kool, E.T. Flow cytometric detection of specific RNAs in native human cells with quenched autoligating FRET probes. Proc. Nat. Acad. Sci. USA 2006, 103, 263-268.
    • (2006) Proc. Nat. Acad. Sci. USA , vol.103 , pp. 263-268
    • Abe, H.1    Kool, E.T.2
  • 223
    • 33845417187 scopus 로고    scopus 로고
    • RNA-templated chemistry in cells: Discrimination of Escherichia, Shigella and Salmonella bacterial strains with a new two-color FRET strategy
    • Silverman, A.P.; Baron, E.J.; Kool, E.T. RNA-templated chemistry in cells: Discrimination of Escherichia, Shigella and Salmonella bacterial strains with a new two-color FRET strategy. ChemBioChem 2006, 7, 1890-1894.
    • (2006) ChemBioChem , vol.7 , pp. 1890-1894
    • Silverman, A.P.1    Baron, E.J.2    Kool, E.T.3
  • 224
    • 26444581340 scopus 로고    scopus 로고
    • Quenched autoligation probes allow discrimination of live bacterial species by single nucleotide differences in rRNA
    • Silverman, A.P.; Kool, E.T. Quenched autoligation probes allow discrimination of live bacterial species by single nucleotide differences in rRNA. Nucleic Acids Res. 2005, 33, 4978-4986.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 4978-4986
    • Silverman, A.P.1    Kool, E.T.2
  • 225
    • 38049074325 scopus 로고    scopus 로고
    • New, stronger nucleophiles for nucleic acid-templated chemistry: Synthesis and application in fluorescence detection of cellular RNA
    • Miller, G.P.; Silverman, A.P.; Kool, E.T. New, stronger nucleophiles for nucleic acid-templated chemistry: Synthesis and application in fluorescence detection of cellular RNA. Bioorg. Med. Chem. 2008, 16, 56-64.
    • (2008) Bioorg. Med. Chem. , vol.16 , pp. 56-64
    • Miller, G.P.1    Silverman, A.P.2    Kool, E.T.3
  • 226
    • 70450206828 scopus 로고    scopus 로고
    • Efficient nucleic acid detection by templated reductive quencher release
    • Franzini, R.M.; Kool, E.T. Efficient nucleic acid detection by templated reductive quencher release. J. Am. Chem. Soc. 2009, 131, 16021-16023.
    • (2009) J. Am. Chem. Soc. , vol.131 , pp. 16021-16023
    • Franzini, R.M.1    Kool, E.T.2
  • 227
    • 77958473987 scopus 로고    scopus 로고
    • Sandwich probes: Two simultaneous reactions for templated nucleic acid detection
    • Kleinbaum, D.J.; Kool, E.T. Sandwich probes: Two simultaneous reactions for templated nucleic acid detection. Chem. Commun. 2010, 46, 8154-8156.
    • (2010) Chem. Commun. , vol.46 , pp. 8154-8156
    • Kleinbaum, D.J.1    Kool, E.T.2
  • 228
    • 79551698944 scopus 로고    scopus 로고
    • Two successive reactions on a DNA template: A strategy for improving background fluorescence and specificity in nucleic acid detection
    • Franzini, R.M.; Kool, E.T. Two successive reactions on a DNA template: A strategy for improving background fluorescence and specificity in nucleic acid detection. Chem. Eur. J. 2011, 17, 2168-2175.
    • (2011) Chem. Eur. J. , vol.17 , pp. 2168-2175
    • Franzini, R.M.1    Kool, E.T.2
  • 229
    • 80053084237 scopus 로고    scopus 로고
    • Improved templated fluorogenic probes enhance the analysis of closely related pathogenic bacteria by microscopy and flow cytometry
    • Franzini, R.M.; Kool, E.T. Improved templated fluorogenic probes enhance the analysis of closely related pathogenic bacteria by microscopy and flow cytometry. Bioconjug. Chem. 2011, 22, 1869-1877.
    • (2011) Bioconjug. Chem. , vol.22 , pp. 1869-1877
    • Franzini, R.M.1    Kool, E.T.2
  • 230
    • 80755136778 scopus 로고    scopus 로고
    • Nucleic acid-templated energy transfer leading to a photorelease reaction and its application to a system displaying a nonlinear response
    • Rothlingshofer, M.; Gorska, K.; Winssinger, N. Nucleic acid-templated energy transfer leading to a photorelease reaction and its application to a system displaying a nonlinear response. J. Am. Chem. Soc. 2011, 133, 18110-18113.
    • (2011) J. Am. Chem. Soc. , vol.133 , pp. 18110-18113
    • Rothlingshofer, M.1    Gorska, K.2    Winssinger, N.3
  • 231
    • 84856084495 scopus 로고    scopus 로고
    • Nucleic acid templated uncaging of fluorophores using Ru-catalyzed photoreduction with visible light
    • Rothlingshofer, M.; Gorska, K.; Winssinger, N. Nucleic acid templated uncaging of fluorophores using Ru-catalyzed photoreduction with visible light. Org. Lett. 2011, 14, 482-485.
    • (2011) Org. Lett. , vol.14 , pp. 482-485
    • Rothlingshofer, M.1    Gorska, K.2    Winssinger, N.3
  • 232
    • 84878863521 scopus 로고    scopus 로고
    • Detection of miRNA in live cells by using templated Ru(II)-catalyzed unmasking of a fluorophore
    • Sadhu, K.K.; Winssinger, N. Detection of miRNA in live cells by using templated Ru(II)-catalyzed unmasking of a fluorophore. Chem. Eur. J. 2013, 19, 8182-8189.
    • (2013) Chem. Eur. J. , vol.19 , pp. 8182-8189
    • Sadhu, K.K.1    Winssinger, N.2
  • 233
    • 33845444755 scopus 로고    scopus 로고
    • DNA-catalyzed transfer of a reporter group
    • Grossmann, T.N.; Seitz, O. DNA-catalyzed transfer of a reporter group. J. Am. Chem. Soc. 2006, 128, 15596-15597.
    • (2006) J. Am. Chem. Soc. , vol.128 , pp. 15596-15597
    • Grossmann, T.N.1    Seitz, O.2
  • 234
    • 54749148220 scopus 로고    scopus 로고
    • Target-catalyzed transfer reactions for the amplified detection of RNA
    • Grossmann, T.N.; Roglin, L.; Seitz, O. Target-catalyzed transfer reactions for the amplified detection of RNA. Angew. Chem. Int. Ed. 2008, 47, 7119-7122.
    • (2008) Angew. Chem. Int. Ed. , vol.47 , pp. 7119-7122
    • Grossmann, T.N.1    Roglin, L.2    Seitz, O.3
  • 235
    • 84860132285 scopus 로고    scopus 로고
    • Consecutive signal amplification for DNA detection based on de novo fluorophore synthesis and host-guest chemistry
    • Chen, X.H.; Roloff, A.; Seitz, O. Consecutive signal amplification for DNA detection based on de novo fluorophore synthesis and host-guest chemistry. Angew. Chem. Int. Ed. 2012, 51, 4479-4483.
    • (2012) Angew. Chem. Int. Ed. , vol.51 , pp. 4479-4483
    • Chen, X.H.1    Roloff, A.2    Seitz, O.3
  • 237
    • 80052228547 scopus 로고    scopus 로고
    • Nucleic acid aptamers: Clinical applications and promising new horizons
    • Ni, X.; Castanares, M.; Mukherjee, A.; Lupold, S.E. Nucleic acid aptamers: Clinical applications and promising new horizons. Curr. Med. Chem. 2011, 18, 4206-4214.
    • (2011) Curr. Med. Chem. , vol.18 , pp. 4206-4214
    • Ni, X.1    Castanares, M.2    Mukherjee, A.3    Lupold, S.E.4
  • 238
    • 84856428949 scopus 로고    scopus 로고
    • Nucleic acid and peptide aptamers: Fundamentals and bioanalytical aspects
    • Mascini, M.; Palchetti, I.; Tombelli, S. Nucleic acid and peptide aptamers: Fundamentals and bioanalytical aspects. Angew. Chem. Int. Ed. 2012, 51, 1316-1332.
    • (2012) Angew. Chem. Int. Ed. , vol.51 , pp. 1316-1332
    • Mascini, M.1    Palchetti, I.2    Tombelli, S.3
  • 239
    • 84864666324 scopus 로고    scopus 로고
    • Combinatorial strategies in fluorescent probe development
    • Vendrell, M.; Zhai, D.; Er, J.C.; Chang, Y.-T. Combinatorial strategies in fluorescent probe development. Chem. Rev. 2012, 112, 4391-4420.
    • (2012) Chem. Rev. , vol.112 , pp. 4391-4420
    • Vendrell, M.1    Zhai, D.2    Er, J.C.3    Chang, Y.-T.4
  • 240
    • 24744465188 scopus 로고    scopus 로고
    • Binary malachite green aptamer for fluorescent detection of nucleic acids
    • Kolpashchikov, D.M. Binary malachite green aptamer for fluorescent detection of nucleic acids. J. Am. Chem. Soc. 2005, 127, 12442-12443.
    • (2005) J. Am. Chem. Soc. , vol.127 , pp. 12442-12443
    • Kolpashchikov, D.M.1
  • 241
    • 35348969892 scopus 로고    scopus 로고
    • Light-up hoechst-DNA aptamer pair: Generation of an aptamer-selective fluorophore from a conventional DNA-staining dye
    • Sando, S.; Narita, A.; Aoyama, Y. Light-up hoechst-DNA aptamer pair: Generation of an aptamer-selective fluorophore from a conventional DNA-staining dye. ChemBioChem 2007, 8, 1795-1803.
    • (2007) ChemBioChem , vol.8 , pp. 1795-1803
    • Sando, S.1    Narita, A.2    Aoyama, Y.3
  • 242
  • 243
    • 79960959180 scopus 로고    scopus 로고
    • RNA Mimics of green fluorescent protein
    • Paige, J.S.; Wu, K.Y.; Jaffrey, S.R. RNA Mimics of green fluorescent protein. Science 2011, 333, 642-646.
    • (2011) Science , vol.333 , pp. 642-646
    • Paige, J.S.1    Wu, K.Y.2    Jaffrey, S.R.3
  • 244
  • 245
    • 55349143191 scopus 로고    scopus 로고
    • Perylene attached to 2′-amino-LNA: Synthesis, incorporation into oligonucleotides, and remarkable fluorescence properties in vitro and in cell culture
    • Astakhova, I.V.; Korshun, V.A.; Jahn, K.; Kjems, J.; Wengel, J. Perylene attached to 2′-amino-LNA: Synthesis, incorporation into oligonucleotides, and remarkable fluorescence properties in vitro and in cell culture. Bioconjug. Chem. 2008, 19, 1995-2007.
    • (2008) Bioconjug. Chem. , vol.19 , pp. 1995-2007
    • Astakhova, I.V.1    Korshun, V.A.2    Jahn, K.3    Kjems, J.4    Wengel, J.5
  • 246
    • 0029077840 scopus 로고
    • Characterization of fully 2′-modified oligoribonucleotide hetero-and homoduplex hybridization and nuclease sensitivity
    • Cummins, L.L.; Owens, S.R.; Risen, L.M.; Lesnik, E.A.; Freier, S.M.; McGee, D.; Guinosso, C.J.; Cook, P.D. Characterization of fully 2′-modified oligoribonucleotide hetero-and homoduplex hybridization and nuclease sensitivity. Nucleic Acids Res. 1995, 23, 2019-2024.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 2019-2024
    • Cummins, L.L.1    Owens, S.R.2    Risen, L.M.3    Lesnik, E.A.4    Freier, S.M.5    McGee, D.6    Guinosso, C.J.7    Cook, P.D.8
  • 247
    • 0141596268 scopus 로고    scopus 로고
    • Conjugates of oligo(2′-O-methylribonucleotides) with minor groove binders as new sequence-specific agents recognizing both grooves of double-stranded DNA
    • Novopashina, D.; Sinyakov, A.; Ryabinin, V.; Venyaminova, A.; Boutorine, A. Conjugates of oligo(2′-O-methylribonucleotides) with minor groove binders as new sequence-specific agents recognizing both grooves of double-stranded DNA. Nucleosides Nucleotides Nucleic Acids 2003, 22, 1179-1182.
    • (2003) Nucleosides Nucleotides Nucleic Acids , vol.22 , pp. 1179-1182
    • Novopashina, D.1    Sinyakov, A.2    Ryabinin, V.3    Venyaminova, A.4    Boutorine, A.5
  • 248
    • 23044516730 scopus 로고    scopus 로고
    • Sequence-specific conjugates of oligo(2′-O-methylribonucleotides) and hairpin oligocarboxamide minor-groove binders: Design, synthesis, and binding studies with double-stranded DNA
    • Novopashina, D.S.; Sinyakov, A.N.; Ryabinin, V.A.; Venyaminova, A.G.; Halby, L.; Sun, J.S.; Boutorine, A.S. Sequence-specific conjugates of oligo(2′-O-methylribonucleotides) and hairpin oligocarboxamide minor-groove binders: Design, synthesis, and binding studies with double-stranded DNA. Chem. Biodivers. 2005, 2, 936-952.
    • (2005) Chem. Biodivers. , vol.2 , pp. 936-952
    • Novopashina, D.S.1    Sinyakov, A.N.2    Ryabinin, V.A.3    Venyaminova, A.G.4    Halby, L.5    Sun, J.S.6    Boutorine, A.S.7
  • 249
    • 0028327551 scopus 로고
    • Effect of derivatization of ribophosphate backbone and terminal ribophosphate groups in oligoribonucleotides an their stability and interaction with eukaryotic cells
    • Boutorine, A.S.; Venyaminova, A.G.; Repkova, M.N.; Sergueyeva, Z.A.; Pyshnyi, D.V. Effect of derivatization of ribophosphate backbone and terminal ribophosphate groups in oligoribonucleotides an their stability and interaction with eukaryotic cells. Biochimie 1994, 76, 23-32.
    • (1994) Biochimie , vol.76 , pp. 23-32
    • Boutorine, A.S.1    Venyaminova, A.G.2    Repkova, M.N.3    Sergueyeva, Z.A.4    Pyshnyi, D.V.5
  • 250
    • 0034741680 scopus 로고    scopus 로고
    • 2′-O-modified oligoribonucleotides with terminal 3′-3′-internucleotide linkage and their derivatives
    • Novopashina, D.; Kuznetsova, M.; Venyaminova, A. 2′-O-modified oligoribonucleotides with terminal 3′-3′-internucleotide linkage and their derivatives. Nucleosides Nucleotides Nucleic Acids 2001, 20, 903-907.
    • (2001) Nucleosides Nucleotides Nucleic Acids , vol.20 , pp. 903-907
    • Novopashina, D.1    Kuznetsova, M.2    Venyaminova, A.3
  • 252
    • 0032077477 scopus 로고    scopus 로고
    • Advantages of 2′-O-methyl oligoribonucleotide probes for detecting RNA targets
    • Majlessi, M.; Nelson, N.C.; Becker, M.M. Advantages of 2′-O-methyl oligoribonucleotide probes for detecting RNA targets. Nucleic Acids Res. 1998, 26, 2224-2229.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 2224-2229
    • Majlessi, M.1    Nelson, N.C.2    Becker, M.M.3
  • 254
    • 79955453676 scopus 로고    scopus 로고
    • Making sense of therapeutics using antisense technology
    • Malik, R.; Roy, I. Making sense of therapeutics using antisense technology. Expert Opin. Drug Discov. 2011, 6, 507-526.
    • (2011) Expert Opin. Drug Discov. , vol.6 , pp. 507-526
    • Malik, R.1    Roy, I.2
  • 255
    • 84856834692 scopus 로고    scopus 로고
    • Cellular uptake and intracellular trafficking of antisense and siRNA oligonucleotides
    • Juliano, R.L.; Ming, X.; Nakagawa, O. Cellular uptake and intracellular trafficking of antisense and siRNA oligonucleotides. Bioconjug. Chem. 2011, 23, 147-157.
    • (2011) Bioconjug. Chem. , vol.23 , pp. 147-157
    • Juliano, R.L.1    Ming, X.2    Nakagawa, O.3
  • 256
  • 257
    • 79953774326 scopus 로고    scopus 로고
    • Non-viral nucleic acid delivery: Key challenges and future directions
    • Elsabahy, M.; Nazarali, A.; Foldvari, M. Non-viral nucleic acid delivery: Key challenges and future directions. Curr. Drug Deliv. 2011, 8, 235-244.
    • (2011) Curr. Drug Deliv. , vol.8 , pp. 235-244
    • Elsabahy, M.1    Nazarali, A.2    Foldvari, M.3
  • 258
    • 37148999024 scopus 로고    scopus 로고
    • Carbon nanotube cell translocation and delivery of nucleic acids in vitro and in vivo
    • Lacerda, L.; Bianco, A.; Prato, M.; Kostarelos, K. Carbon nanotube cell translocation and delivery of nucleic acids in vitro and in vivo. J. Mater. Chem. 2008, 18, 17-22.
    • (2008) J. Mater. Chem. , vol.18 , pp. 17-22
    • Lacerda, L.1    Bianco, A.2    Prato, M.3    Kostarelos, K.4
  • 261
    • 38949105860 scopus 로고    scopus 로고
    • Functionalized carbon nanotubes in drug design and discovery
    • Prato, M.; Kostarelos, K.; Bianco, A. Functionalized carbon nanotubes in drug design and discovery. Acc. Chem. Res. 2008, 41, 60-68.
    • (2008) Acc. Chem. Res. , vol.41 , pp. 60-68
    • Prato, M.1    Kostarelos, K.2    Bianco, A.3
  • 262
    • 84860114796 scopus 로고    scopus 로고
    • Fluorescently labeled single-walled carbon nanotubes and their hybrids with oligonucleotides
    • Apartsin, E.K.; Novopashina, D.S.; Nastaushev, Y.V.; Venyaminova, A.G. Fluorescently labeled single-walled carbon nanotubes and their hybrids with oligonucleotides. Nanotechnol. Russ. 2012, 7, 99-109.
    • (2012) Nanotechnol. Russ. , vol.7 , pp. 99-109
    • Apartsin, E.K.1    Novopashina, D.S.2    Nastaushev, Y.V.3    Venyaminova, A.G.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.