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Volumn 423, Issue 1, 2012, Pages 178-183

Fluorescence assay of polyamide-DNA interactions

Author keywords

Binding; DNA; Fluorescence; Polyamide

Indexed keywords

FLUORESCENCE; POLYAMIDES;

EID: 84857498921     PISSN: 00032697     EISSN: 10960309     Source Type: Journal    
DOI: 10.1016/j.ab.2012.01.017     Document Type: Article
Times cited : (12)

References (39)
  • 1
    • 0037832279 scopus 로고    scopus 로고
    • Recognition of the DNA minor groove by pyrrole-imidazole polyamides
    • DOI 10.1016/S0959-440X(03)00081-2
    • P.B. Dervan, B.S. Edelson, Recognition of the DNA minor groove by pyrrole-imidazole polyamides, Curr. Opin. Struct. Biol. 13 (2003) 284-299. (Pubitemid 36782454)
    • (2003) Current Opinion in Structural Biology , vol.13 , Issue.3 , pp. 284-299
    • Dervan, P.B.1    Edelson, B.S.2
  • 2
    • 0034951136 scopus 로고    scopus 로고
    • DNA minor-groove recognition by small molecules
    • DOI 10.1039/a705982e
    • S. Neidle, DNA minor-groove recognition by small molecules, Nat. Prod. Rep. 18 (2001) 291-309. (Pubitemid 32589165)
    • (2001) Natural Product Reports , vol.18 , Issue.3 , pp. 291-309
    • Neidle, S.1
  • 6
    • 0033617408 scopus 로고    scopus 로고
    • Inhibition of Ets-1 DNA binding and ternary complex formation between Ets-1, NF-jB, and DNA by a designed DNA-binding ligand
    • L.A. Dickinson, J.W. Trauger, E.E. Baird, P.B. Dervan, B.J. Graves, J.M. Gottesfeld, Inhibition of Ets-1 DNA binding and ternary complex formation between Ets-1, NF-jB, and DNA by a designed DNA-binding ligand, J. Biol. Chem. 274 (1999) 12765-12773.
    • (1999) J. Biol. Chem. , vol.274 , pp. 12765-12773
    • Dickinson, L.A.1    Trauger, J.W.2    Baird, E.E.3    Dervan, P.B.4    Graves, B.J.5    Gottesfeld, J.M.6
  • 7
    • 38849111296 scopus 로고    scopus 로고
    • Sequence-specific alkylation by Y-shaped and tandem hairpin pyrrole-imidazole polyamides
    • DOI 10.1002/chem.200700571
    • S. Sasaki, T. Bando, M. Minoshima, K-I. Shinohara, H. Sugiyama, Sequence-specific alkylation by Y-shaped and tandem hairpin pyrrole-imidazole polyamides, Chemistry 14 (2008) 864-870. (Pubitemid 351196764)
    • (2008) Chemistry - A European Journal , vol.14 , Issue.3 , pp. 864-870
    • Sasaki, S.1    Bando, T.2    Minoshima, M.3    Shinohara, K.-I.4    Sugiyama, H.5
  • 9
    • 76649131990 scopus 로고    scopus 로고
    • Anticancer activities of alkylating pyrrole-imidazole polyamides with specific sequence recognition
    • K-I. Shinohara, T. Bando, H. Sugiyama, Anticancer activities of alkylating pyrrole-imidazole polyamides with specific sequence recognition, Anti-Cancer Drugs 21 (2011) 228-242.
    • (2011) Anti-Cancer Drugs , vol.21 , pp. 228-242
    • Shinohara, K.-I.1    Bando, T.2    Sugiyama, H.3
  • 11
    • 42249094879 scopus 로고    scopus 로고
    • Small molecules targeting histone H4 as potential therapeutics for chronic myelogenous leukemia
    • DOI 10.1158/1535-7163.MCT-08-0130
    • C.J. Chou, M.E. Farkas, S.M. Tsai, D. Alvarez, P.B. Dervan, J.M. Gottesfeld, Small molecules targeting histone H4 as potential therapeutics for chronic myelogenous leukemia, Mol. Cancer Ther. 7 (2008) 769-778. (Pubitemid 351551030)
    • (2008) Molecular Cancer Therapeutics , vol.7 , Issue.4 , pp. 769-778
    • Chou, C.J.1    Farkas, M.E.2    Tsai, S.M.3    Alvarez, D.4    Dervan, P.B.5    Gottesfeld, J.M.6
  • 12
    • 0031304271 scopus 로고    scopus 로고
    • Optical absorbance and fluorescence techniques for measuring DNA-drug interactions
    • T.C. Jenkins, Optical absorbance and fluorescence techniques for measuring DNA-drug interactions, Methods Mol. Biol. 90 (1997) 195-218.
    • (1997) Methods Mol. Biol. , vol.90 , pp. 195-218
    • Jenkins, T.C.1
  • 13
    • 34447137400 scopus 로고    scopus 로고
    • DNA intercalators in cancer therapy: Organic and inorganic drugs and their spectroscopic tools of analysis
    • DOI 10.2174/138955707780859413
    • N.J. Wheate, C.R. Brodie, J.G. Collins, S. Kemp, J.R. Aldrich-Wright, DNA intercalators in cancer therapy: organic and inorganic drugs and their spectroscopic tools of analysis, Mini Rev. Med. Chem. 7 (2007) 627-648. (Pubitemid 47099183)
    • (2007) Mini-Reviews in Medicinal Chemistry , vol.7 , Issue.6 , pp. 627-648
    • Wheate, N.J.1    Brodie, C.R.2    Collins, J.G.3    Kemp, S.4    Aldrich-Wright, J.R.5
  • 14
    • 33645787046 scopus 로고    scopus 로고
    • Fluorescence dynamics of interactions between polyamide PyPyPybDp and DNA
    • H. Zhang, J. Wang, Y. Wu, G. Yuan, X. Al, L. Wang, J. Zhang, Fluorescence dynamics of interactions between polyamide PyPyPybDp and DNA, Sci. China B 49 (2006) 75-80.
    • (2006) Sci. China B , vol.49 , pp. 75-80
    • Zhang, H.1    Wang, J.2    Wu, Y.3    Yuan, G.4    Al, X.5    Wang, L.6    Zhang, J.7
  • 15
    • 67649199177 scopus 로고    scopus 로고
    • Effects of the N-terminal acylamido group of imidazole- and pyrrole-containing polyamides on DNA sequence specificity and binding affinity
    • L. Westrate, H. Mackay, T. Brown, B. Nguyen, J. Kluza, W.D. Wilson, M. Lee, J.A. Hartley, Effects of the N-terminal acylamido group of imidazole- and pyrrole-containing polyamides on DNA sequence specificity and binding affinity, Biochemistry 48 (2009) 5679-5688.
    • (2009) Biochemistry , vol.48 , pp. 5679-5688
    • Westrate, L.1    Mackay, H.2    Brown, T.3    Nguyen, B.4    Kluza, J.5    Wilson, W.D.6    Lee, M.7    Hartley, J.A.8
  • 16
    • 0038203072 scopus 로고    scopus 로고
    • Sequence selective recognition in the minor groove of dsDNA by pyrrole, imidazole-substituted bis-benzimidazole conjugates
    • DOI 10.1021/ja035116k
    • P. Reddy, P. Jindra, A. Satz, T. Bruice, Sequence selective recognition in the minor groove of dsDNA by pyrrole, imidazole-substituted bis-benzimidazole conjugates, J. Am. Chem. Soc. 125 (2003) 7843-7848. (Pubitemid 36782159)
    • (2003) Journal of the American Chemical Society , vol.125 , Issue.26 , pp. 7843-7848
    • Reddy, P.M.1    Jindra, P.T.2    Satz, A.L.3    Bruice, T.C.4
  • 17
    • 78650161470 scopus 로고    scopus 로고
    • Guanidiniocarbonyl-pyrrole-aryl conjugates as nucleic acid sensors: Switch of binding mode and spectroscopic responses by introducing additional binding sites into the linker
    • K. Groger, D. Baretic, I. Piantanida, M. Marjanovic, M. Kralj, M. Grabar, S. Tomic, C. Schmuck, Guanidiniocarbonyl-pyrrole-aryl conjugates as nucleic acid sensors: switch of binding mode and spectroscopic responses by introducing additional binding sites into the linker, Org. Biomol. Chem. 9 (2011) 198-209.
    • (2011) Org. Biomol. Chem. , vol.9 , pp. 198-209
    • Groger, K.1    Baretic, D.2    Piantanida, I.3    Marjanovic, M.4    Kralj, M.5    Grabar, M.6    Tomic, S.7    Schmuck, C.8
  • 21
    • 0034881638 scopus 로고    scopus 로고
    • Footprinting methods for analysis of pyrrole-imidazole polyamide/DNA complexes
    • DOI 10.1016/S0076-6879(01)40436-8
    • J.W. Trauger, P.B. Dervan, Footprinting methods for analysis of pyrrole-imidazole polyamide/DNA complexes, Methods Enzymol. 340 (2001) 450-466. (Pubitemid 32751714)
    • (2001) Methods in Enzymology , vol.340 , pp. 450-466
    • Trauger, J.W.1    Dervan, P.B.2
  • 22
    • 0037070591 scopus 로고    scopus 로고
    • Hairpin versus extended DNA binding of a substituted β-alanine linked polyamide
    • DOI 10.1021/ja0122039
    • C.R. Woods, T. Ishii, B. Wu, K.W. Bair, D.L. Boger, Hairpin versus extended DNA binding of a substituted β-alanine linked polyamide, J. Am. Chem. Soc. 124 (2002) 2148-2152. (Pubitemid 34267100)
    • (2002) Journal of the American Chemical Society , vol.124 , Issue.10 , pp. 2148-2152
    • Woods, C.R.1    Ishii, T.2    Wu, B.3    Bair, K.W.4    Boger, D.L.5
  • 23
    • 0030059085 scopus 로고    scopus 로고
    • Solid phase synthesis of polyamides containing imidazole and pyrrole amino acids
    • DOI 10.1021/ja960720z
    • E.E. Baird, P.B. Dervan, Solid phase synthesis of polyamides containing imidazole and pyrrole amino acids, J. Am. Chem. Soc. 118 (1996) 6141-6146. (Pubitemid 26236849)
    • (1996) Journal of the American Chemical Society , vol.118 , Issue.26 , pp. 6141-6146
    • Baird, E.E.1    Dervan, P.B.2
  • 24
    • 70149083228 scopus 로고    scopus 로고
    • Solution-phase synthesis of pyrrole-imidazole polyamides
    • D.M. Chenoweth, D.A. Harki, P.B. Dervan, Solution-phase synthesis of pyrrole-imidazole polyamides, J. Am. Chem. Soc. 131 (2009) 7175-7181.
    • (2009) J. Am. Chem. Soc. , vol.131 , pp. 7175-7181
    • Chenoweth, D.M.1    Harki, D.A.2    Dervan, P.B.3
  • 26
    • 0037192151 scopus 로고    scopus 로고
    • Dissecting the metal ion dependence of DNA binding by PvuII endonuclease
    • DOI 10.1021/bi015843x
    • L.H. Conlan, C.M. Dupureur, Dissecting the metal ion dependence of DNA binding by PvuII endonuclease, Biochemistry 41 (2002) 1335-1342. (Pubitemid 34083788)
    • (2002) Biochemistry , vol.41 , Issue.4 , pp. 1335-1342
    • Conlan, L.H.1    Dupureur, C.M.2
  • 27
    • 3142618965 scopus 로고    scopus 로고
    • Binding and conformational analysis of phosphoramidate - Restriction enzyme interactions
    • DOI 10.1021/bi049509n
    • J. King, L. Bowen, C.M. Dupureur, Binding and conformational analysis of phosphoramidate-restriction enzyme interactions, Biochemistry 43 (2004) 8551-8559. (Pubitemid 38902533)
    • (2004) Biochemistry , vol.43 , Issue.26 , pp. 8551-8559
    • King, J.B.1    Bowen, L.M.2    Dupureur, C.M.3
  • 28
    • 0035957061 scopus 로고    scopus 로고
    • Binding and recognition of GATATC target sequences by the EcoRV restriction endonuclease: A study using fluorescent oligonucleotides and fluorescence polarization
    • DOI 10.1021/bi001956p
    • S. Reid, D. Parry, H-H. Liu, B.A. Connolly, Binding and recognition of GATATC target sequences by the Eco RV restriction endonuclease: a study using fluorescent oligonucleotides and fluorescence polarization, Biochemistry 40 (2001) 2484-2494. (Pubitemid 32171722)
    • (2001) Biochemistry , vol.40 , Issue.8 , pp. 2484-2494
    • Reid, S.L.1    Parry, D.2    Liu, H.-H.3    Connolly, B.A.4
  • 30
    • 0035105078 scopus 로고    scopus 로고
    • Expanding the recognition of the minor groove of DNA by incorporation of β-alanine in hairpin polyamides
    • DOI 10.1016/S0968-0896(00)00282-0, PII S0968089600002820
    • C.C. Wang, U. Ellervik, P.B. Dervan, Expanding the recognition of the minor groove of DNA by incorporation of β-alanine in hairpin polyamides, Bioorg. Med. Chem. 9 (2001) 653-657. (Pubitemid 32208585)
    • (2001) Bioorganic and Medicinal Chemistry , vol.9 , Issue.3 , pp. 653-657
    • Wang, C.C.C.1    Ellervik, U.2    Dervan, P.B.3
  • 33
    • 77958046177 scopus 로고    scopus 로고
    • Structural basis for cyclic Py-Im polyamide allosteric inhibition of nuclear receptor binding
    • D.M. Chenoweth, P.B. Dervan, Structural basis for cyclic Py-Im polyamide allosteric inhibition of nuclear receptor binding, J. Am. Chem. Soc. 132 (2010) 14521-14529.
    • (2010) J. Am. Chem. Soc. , vol.132 , pp. 14521-14529
    • Chenoweth, D.M.1    Dervan, P.B.2
  • 34
    • 0034935287 scopus 로고    scopus 로고
    • Nonradiochemical DNase I footprinting by capillary electrophoresis
    • DOI 10.1002/1522-2683(200106)22:10<1979::AID-ELPS1979>3.0.CO;2-A
    • D.O. Wilson, P. Johnson, B.R. McCord, Nonradiochemical DNase I footprinting by capillary electrophoresis, Electrophoresis 22 (2001) 1979-1986. (Pubitemid 32621925)
    • (2001) Electrophoresis , vol.22 , Issue.10 , pp. 1979-1986
    • Wilson, D.O.1    Johnson, P.2    McCord, B.R.3
  • 35
    • 46349099944 scopus 로고    scopus 로고
    • High-throughput single-nucleotide structural mapping by capillary automated footprinting analysis
    • S. Mitra, I.V. Shcherbakova, R.B. Altman, M. Brenowitz, A. Laederach, High-throughput single-nucleotide structural mapping by capillary automated footprinting analysis, Nucleic Acids Res. 36 (2008) e63.
    • (2008) Nucleic Acids Res. , vol.36
    • Mitra, S.1    Shcherbakova, I.V.2    Altman, R.B.3    Brenowitz, M.4    Laederach, A.5
  • 36
    • 2242427108 scopus 로고    scopus 로고
    • Multiple metal ions drive DNA association by PvuII endonuclease
    • DOI 10.1021/bi026403o
    • L.H. Conlan, C.M. Dupureur, Multiple metal ions drive DNA association by PvuII endonuclease, Biochemistry 41 (2002) 14848-14855. (Pubitemid 35470663)
    • (2002) Biochemistry , vol.41 , Issue.50 , pp. 14848-14855
    • Conlan, L.H.1    Dupureur, C.M.2
  • 37
    • 0033955735 scopus 로고    scopus 로고
    • Advances in surface plasmon resonance biosensor analysis
    • DOI 10.1016/S0958-1669(99)00054-3
    • R.L. Rich, D.G. Myszka, Advances in surface plasmon resonance biosensor analysis, Curr. Opin. Biotechnol. 11 (2000) 54-61. (Pubitemid 30099039)
    • (2000) Current Opinion in Biotechnology , vol.11 , Issue.1 , pp. 54-61
    • Rich, R.L.1    Myszka, D.G.2
  • 38
    • 0034976453 scopus 로고    scopus 로고
    • Towards a minimal motif for artificial transcriptional activators
    • DOI 10.1016/S1074-5521(01)00037-0, PII S1074552101000370
    • A.Z. Ansari, A.K. Mapp, D.H. Nguyen, P.B. Dervan, M. Ptashne, Towards a minimal motif for artificial transcriptional activators, Chem. Biol. 8 (2001) 583-592. (Pubitemid 32532974)
    • (2001) Chemistry and Biology , vol.8 , Issue.6 , pp. 583-592
    • Ansari, A.Z.1    Mapp, A.K.2    Nguyen, D.H.3    Dervan, P.B.4    Ptashne, M.5
  • 39
    • 0022437260 scopus 로고
    • Quantitative DNase footprint titration: A method for studying protein-DNA interactions
    • M. Brenowitz, D.F. Senear, M.A. Shea, G.K. Ackers, Quantitative DNase footprint titration: A method for studying protein-DNA interactions, Methods Enzymol. 130 (1986) 132-181.
    • (1986) Methods Enzymol. , vol.130 , pp. 132-181
    • Brenowitz, M.1    Senear, D.F.2    Shea, M.A.3    Ackers, G.K.4


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