Molecular biology: The transcriptional landscape of the mammalian genome

Science

Volumn 309, Issue 5740, 2005, Pages 1559-1563

  Carninci, P ^a   Kasukawa, T ^a   Katayama, S ^a   Gough, J ^a   Frith, M C ^a   Maeda, N ^a   Oyama, R ^a   Ravasi, T ^a   Lenhard, B ^a   Wells, C ^a   Kodzius, R ^a   Shimokawa, K ^a   Bajic, V B ^a   Brenner, S E ^a   Batalov, S ^a   Forrest, A R R ^a   Zavolan, M ^a   Davis, M J ^a   Wilming, L G ^a   Aidinis, V ^a   Allen, J E ^a   Ambesi Impiombato, A ^a   Apweiler, R ^a   Aturaliya, R N ^a   Bailey, T L ^a   Bansal, M ^a   Baxter, L ^a   Beisel, K W ^a   Bersano, T ^a   Bono, H ^a   Chalk, A M ^a   Chiu, K P ^a   Choudhary, V ^a   Christoffels, A ^a   Clutterbuck, D R ^a   Crowe, M L ^a   Dalla, E ^a   Dalrymple, B P ^a   Bono, B ^a   Gatta, G Della ^a   Bernardo, D Di ^a   Down, T ^a   Engstrom, P ^a   Fagiolini, M ^a   Faulkner, G ^a   Fletcher, C F ^a   Fukushima, T ^a   Furuno, M ^a   Futaki, S ^a   Gariboldi, M ^a   Georgii Hemming, P ^a   Gingeras, T R ^a   Gojobori, T ^a   Green, R E ^a   Gustincich, S ^a   Harbers, M ^a   Hayashi, Y ^a   Hensch, T K ^a   Hirokawa, N ^a   Hill, D ^a   Huminiecki, L ^a   Iacono, M ^a   Ikeo, K ^a   Iwama, A ^a   Ishikawa, T ^a   Jakt, M ^a   Kanapin, A ^a   Katoh, M ^a   Kawasawa, Y ^a   Kelso, J ^a   Kitamura, H ^a   Kitano, H ^a   Kollias, G ^a   Krishnan, S P T ^a   Kruger, A ^a   Kummerfeld, S K ^a   Kurochkin, I V ^a   Lareau, L F ^a   Lazarevic, D ^a   Lipovich, L ^a   Liu, J ^a   Liuni, S ^a   McWilliam, S ^a   Babu, M Madan ^a   Madera, M ^a   Marchionni, L ^a   Matsuda, H ^a   Matsuzawa, S ^a   Miki, H ^a   Mignone, F ^a   Miyake, S ^a   Morris, K ^a   Mottagui Tabar, S ^a   Mulder, N ^a   Nakano, N ^a   Nakauchi, H ^a   Ng, P ^a   Nilsson, R ^a   Nishiguchi, S ^a   Nishikawa, S ^a   Nori, F ^a   Ohara, O ^a   Okazaki, Y ^a   Orlando, V ^a   Pang, K C ^a   Pavan, W J ^a   Pavesi, G ^a   Pesole, G ^a   Petrovsky, N ^a   Piazza, S ^a   Reed, J ^a   Reid, J F ^a   Ring, B Z ^a   Ringwald, M ^a   Rost, B ^a   Ruan, Y ^a   Salzberg, S L ^a   Sandelin, A ^a   Schneider, C ^a   Schonbach C ^a   Sekiguchi, K ^a   Semple, C A M ^a   Seno, S ^a   Sessa, L ^a   Sheng, Y ^a   Shibata, Y ^a   Shimada, H ^a   Shimada, K ^a   Silva, D ^a   Sinclair, B ^a   Sperling, S ^a   Stupka, E ^a   Sugiura, K ^a   Sultana, R ^a   Takenaka, Y ^a   Taki, K ^a   Tammoja, K ^a   Tan, S L ^a   Tang, S ^a   Taylor, M S ^a   Tegner, J ^a   Teichmann, S A ^a   Ueda, H R ^a   Nimwegen, E ^a   Verardo, R ^a   Wei, C L ^a   Yagi, K ^a   Yamanishi, H ^a   Zabarovsky, E ^a   Zhu, S ^a   Zimmer, A ^a   Hide, W ^a   Bult, C ^a   Grimmond, S M ^a   Teasdale, R D ^a   Liu, E T ^a   Brusic, V ^a   Quackenbush, J ^a   Wahlestedt, C ^a   Mattick, J S ^a   Hume, D A ^a   Kai, C ^a   Sasaki, D ^a   Tomaru, Y ^a   Fukuda, S ^a   Kanamori Katayama, M ^a   Suzuki, M ^a   Aoki, J ^a   Arakawa, T ^a   Iida, J ^a   Imamura, K ^a   Itoh, M ^a   Kato, T ^a   Kawaji, H ^a   Kawagashira, N ^a   Kawashima, T ^a   Kojima, M ^a   Kondo, S ^a   Konno, H ^a   Nakano, K ^a   Ninomiya, N ^a   Nishio, T ^a   Okada, M ^a   Plessy, C ^a   Shibata, K ^a   Shiraki, T ^a   Suzuki, S ^a   Tagami, M ^a   Waki, K ^a   Watahiki, A ^a   Okamura Oho, Y ^a   Suzuki, H ^a   Kawai, J ^a   Hayashizaki, Y ^a   more..

^a NONE

Author keywords

[No Author keywords available]

Indexed keywords

DNA; MOLECULAR BIOLOGY; PROTEINS;

MAMMALIAN GENOME; MAMMALIAN TRANSCRIPTIONAL REGULATION; POLYADENYLATION; PROTEIN-CODING TRANSCRIPTS;

GENES;

COMPLEMENTARY DNA; GENOMIC DNA; MESSENGER RNA; TRANSCRIPTOME; UNTRANSLATED RNA; PROTEIN; RNA;

GENOME; MAMMAL;

ARTICLE; DEVELOPMENTAL GENETICS; GENETIC TRANSCRIPTION; GENOME; MAMMAL; MOUSE; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; RNA SPLICING; 3' UNTRANSLATED REGION; ANIMAL; CHEMISTRY; CLASSIFICATION; GENETICS; GENOMICS; HUMAN; NUCLEOTIDE SEQUENCE; REGULATOR GENE; REGULATORY RNA SEQUENCE; TRANSCRIPTION INITIATION SITE;

MAMMALIA;

3' UNTRANSLATED REGIONS; ANIMALS; BASE SEQUENCE; CONSERVED SEQUENCE; DNA, COMPLEMENTARY; GENOME; GENOME, HUMAN; GENOMICS; HUMANS; MICE; PROMOTER REGIONS (GENETICS); PROTEINS; REGULATORY SEQUENCES, RIBONUCLEIC ACID; RNA; RNA SPLICING; RNA, UNTRANSLATED; TERMINATOR REGIONS (GENETICS); TRANSCRIPTION INITIATION SITE; TRANSCRIPTION, GENETIC;

EID: 24644519490     PISSN: 00368075     EISSN: 10959203     Source Type: Journal    
DOI: 10.1126/science.1112014     Document Type: Article

References (27)

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27. We thank H. Atsui, A. Hasegawa, Y. Hasegawa, K. Hayashida, H. Himei, F. Hori, T. Iwashita, S. Kanagawa, C. Kawazu, M. Aoki, K. Murakami, M. Murata, H. Nishida, M. Nishikawa, K. Nomura, M. Ohno, Y. Onodera, N. Sakazume, H. Sato, Y. Shigemoto, N. Suzuki, Y. Takeda, Y. Tsujimura, K. Yoshida for discussion, encouragement, and technical assistance. We thank A. Wada, T. Ogawa, M. Muramatsu, and all the members of RIKEN Yokohama Research Promotion Division for support and encouragement We also thank the Laboratory of Genome Exploration Research Group for secretarial and technical assistance, Yokohama City University for providing human samples, and computational resources of the RIKEN Super Combined Cluster (RSCC). This work was mainly supported by Research Grant for the Genome Network Project from MEXT, the RIKEN Genome Exploration Research Project from MEXT (Y.H.), Advanced and Innovational Research Program in Life Science (Y.H.), National Project on Protein Structural and Functional Analysis from MEXT (Y.H.), Presidential Research Grant for Intersystem Collaboration of RIKEN (P.C. and Y.H.) and a grant from the Six Framework Program from the European Commission (P.C.).