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Volumn 9, Issue 14, 2003, Pages 3353-3366

U-pin polyamide motif for recognition of the DNA minor groove

Author keywords

Amino acids; DNA recognition; Pyrrole imidazole polyamides; U pins

Indexed keywords

CHEMICAL BONDS; DNA; MOLECULAR STRUCTURE; SYNTHESIS (CHEMICAL);

EID: 0042347478     PISSN: 09476539     EISSN: None     Source Type: Journal    
DOI: 10.1002/chem.200304784     Document Type: Article
Times cited : (17)

References (37)
  • 7
    • 0035836720 scopus 로고    scopus 로고
    • An obvious limitation of this model is that pairing of a dip (as in A · T) with another dip (as in Py/Im, this is the second situation from the top in the mismatch column in Figure 1) is mechanically possible in this model. However, for the sake of simplicity, we did not want to resort to more difficult recognition surfaces but chose to phrase the rules accordingly. However, after a slight modification of the rules, the model can easily be extended to also illustrate the so-called 1:1 binding mode (cf. A. R. Urbach, P. B. Dervan, Proc. Natl. Acad. Sci. USA 2001, 98, 4343-4348).
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 4343-4348
    • Urbach, A.R.1    Dervan, P.B.2
  • 8
    • 0041594226 scopus 로고    scopus 로고
    • note
    • In a mixture of two different unconnected polyamide strands (with for example four residues each) with DNA two 1:1 complexes and three 2:1 complexes can potentially be formed. In 2:1 complexes the polyamides either bind as a homodimer (if two molecules of the same strand bind side by side) or a heterodimer.
  • 23
    • 0030059085 scopus 로고    scopus 로고
    • a) For solid-phase synthesis using the Boc strategy see: E. E. Baird, P. B. Dervan, J. Am. Chem. Soc. 1996, 118, 6141-6146; b) for Fmoc strategy see: N. R. Wurtz, J. M. Turner, E. E. Baird, P. B. Dervan, Org. Lett. 2001, 3, 1201-1203; c) for a solid-phase synthesis strategy of polyamides with a variety of different tail residues see ref. [7].
    • (1996) J. Am. Chem. Soc. , vol.118 , pp. 6141-6146
    • Baird, E.E.1    Dervan, P.B.2
  • 24
    • 0035912351 scopus 로고    scopus 로고
    • a) For solid-phase synthesis using the Boc strategy see: E. E. Baird, P. B. Dervan, J. Am. Chem. Soc. 1996, 118, 6141-6146; b) for Fmoc strategy see: N. R. Wurtz, J. M. Turner, E. E. Baird, P. B. Dervan, Org. Lett. 2001, 3, 1201-1203; c) for a solid-phase synthesis strategy of polyamides with a variety of different tail residues see ref. [7].
    • (2001) Org. Lett. , vol.3 , pp. 1201-1203
    • Wurtz, N.R.1    Turner, J.M.2    Baird, E.E.3    Dervan, P.B.4
  • 25
    • 0030059085 scopus 로고    scopus 로고
    • note
    • a) For solid-phase synthesis using the Boc strategy see: E. E. Baird, P. B. Dervan, J. Am. Chem. Soc. 1996, 118, 6141-6146; b) for Fmoc strategy see: N. R. Wurtz, J. M. Turner, E. E. Baird, P. B. Dervan, Org. Lett. 2001, 3, 1201-1203; c) for a solid-phase synthesis strategy of polyamides with a variety of different tail residues see ref. [7].
  • 28
    • 0042095208 scopus 로고    scopus 로고
    • note
    • 3) without the nucleophile for several days without any signs of decomposition.
  • 29
    • 0042095209 scopus 로고    scopus 로고
    • note
    • For the synthesis of compounds 21 and 22 see ref. [11a]. Compound 24 was obtained according to ref. [2]. Compound 25 can be obtained according to ref. [16].
  • 32
    • 0031215078 scopus 로고    scopus 로고
    • For examples see ref. [8b] and S. White, E. E. Baird, P. B. Dervan, Chem. Biol. 1997, 4, 569-578; M. E. Parks, E. E. Baird, P. B. Dervan, J. Am. Chem. Soc. 1996, 118, 6153-6159.
    • (1997) Chem. Biol. , vol.4 , pp. 569-578
    • White, S.1    Baird, E.E.2    Dervan, P.B.3
  • 33
    • 0029666750 scopus 로고    scopus 로고
    • For examples see ref. [8b] and S. White, E. E. Baird, P. B. Dervan, Chem. Biol. 1997, 4, 569-578; M. E. Parks, E. E. Baird, P. B. Dervan, J. Am. Chem. Soc. 1996, 118, 6153-6159.
    • (1996) J. Am. Chem. Soc. , vol.118 , pp. 6153-6159
    • Parks, M.E.1    Baird, E.E.2    Dervan, P.B.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.