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e) M. P. Gygi, M. D. Ferguson, H. C. Mefford, P. L. Kevin, C. O'Day, P. Zhou, C. Friedman, G. van den Engh, M. L. Stobowitz, B. J. Trask, Nucleic Acids Res. 2002, 30, 2790-2799.
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7
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0035836720
-
-
An obvious limitation of this model is that pairing of a dip (as in A · T) with another dip (as in Py/Im, this is the second situation from the top in the mismatch column in Figure 1) is mechanically possible in this model. However, for the sake of simplicity, we did not want to resort to more difficult recognition surfaces but chose to phrase the rules accordingly. However, after a slight modification of the rules, the model can easily be extended to also illustrate the so-called 1:1 binding mode (cf. A. R. Urbach, P. B. Dervan, Proc. Natl. Acad. Sci. USA 2001, 98, 4343-4348).
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8
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0041594226
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-
note
-
In a mixture of two different unconnected polyamide strands (with for example four residues each) with DNA two 1:1 complexes and three 2:1 complexes can potentially be formed. In 2:1 complexes the polyamides either bind as a homodimer (if two molecules of the same strand bind side by side) or a heterodimer.
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9
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0027970146
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S. E. Swalley, E. E. Baird, P. B. Dervan, J. Am. Chem. Soc. 1999, 121, 1113-1120.
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12
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0036280321
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J. M. Belitsky, D. H. Nguyen, N. R. Wurtz, P. B. Dervan, Bioorg. Med. Chem. 2002, 10, 2767-2774.
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Belitsky, J.M.1
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13
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0036280286
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a) G. Burckhardt, H. Simon, E. Birch-Hirschfeld, L. Kittler, S. K. Sharma, J. W. Lown, C. Zimmer, J. Biomol. Struct. Dyn. 2002, 19, 1101-1109;
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14
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0037039371
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b) C. C. O'Hare, D. Mack, M. Tandon, S. K. Sharma, J. W. Lown, M. L. Kopka, R. E. Dickerson, J. A. Hartley, Proc. Natl. Acad. Sci. USA 2002, 99, 72-77;
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Kopka, M.L.6
Dickerson, R.E.7
Hartley, J.A.8
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15
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0031782431
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c) W. A. Greenberg, E. E. Baird, P. B. Dervan, Chem. Eur. J. 1998, 4, 796-805;
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16
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0030460191
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d) Y. H. Chen, Y. W. Yang, J. W. Lown, J. Biomol. Struct. Dyn. 1996, 14, 341-355;
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21
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0037462098
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B. Olenyuk, C. Jitianu, P. B. Dervan, J. Am. Chem. Soc. 2003, 125, 4741-4745.
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23
-
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0030059085
-
-
a) For solid-phase synthesis using the Boc strategy see: E. E. Baird, P. B. Dervan, J. Am. Chem. Soc. 1996, 118, 6141-6146; b) for Fmoc strategy see: N. R. Wurtz, J. M. Turner, E. E. Baird, P. B. Dervan, Org. Lett. 2001, 3, 1201-1203; c) for a solid-phase synthesis strategy of polyamides with a variety of different tail residues see ref. [7].
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Baird, E.E.1
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24
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0035912351
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-
a) For solid-phase synthesis using the Boc strategy see: E. E. Baird, P. B. Dervan, J. Am. Chem. Soc. 1996, 118, 6141-6146; b) for Fmoc strategy see: N. R. Wurtz, J. M. Turner, E. E. Baird, P. B. Dervan, Org. Lett. 2001, 3, 1201-1203; c) for a solid-phase synthesis strategy of polyamides with a variety of different tail residues see ref. [7].
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Wurtz, N.R.1
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25
-
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0030059085
-
-
note
-
a) For solid-phase synthesis using the Boc strategy see: E. E. Baird, P. B. Dervan, J. Am. Chem. Soc. 1996, 118, 6141-6146; b) for Fmoc strategy see: N. R. Wurtz, J. M. Turner, E. E. Baird, P. B. Dervan, Org. Lett. 2001, 3, 1201-1203; c) for a solid-phase synthesis strategy of polyamides with a variety of different tail residues see ref. [7].
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26
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33751392565
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B. L. Bray, P. H. Mathies, R. Naef, D. R. Solas, T. T. Tidwell, D. R. Artis, J. M. Muchowski, J. Org. Chem. 1990, 55, 6317-6328.
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28
-
-
0042095208
-
-
note
-
3) without the nucleophile for several days without any signs of decomposition.
-
-
-
-
29
-
-
0042095209
-
-
note
-
For the synthesis of compounds 21 and 22 see ref. [11a]. Compound 24 was obtained according to ref. [2]. Compound 25 can be obtained according to ref. [16].
-
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30
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0342987251
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0021943518
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C. Yanisch-Perron, J. Vieira, J. Messing, Gene 1985, 33, 103-119.
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32
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0031215078
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-
For examples see ref. [8b] and S. White, E. E. Baird, P. B. Dervan, Chem. Biol. 1997, 4, 569-578; M. E. Parks, E. E. Baird, P. B. Dervan, J. Am. Chem. Soc. 1996, 118, 6153-6159.
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0029666750
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For examples see ref. [8b] and S. White, E. E. Baird, P. B. Dervan, Chem. Biol. 1997, 4, 569-578; M. E. Parks, E. E. Baird, P. B. Dervan, J. Am. Chem. Soc. 1996, 118, 6153-6159.
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