-
1
-
-
33746351078
-
From DNA to RNA to disease and back: the 'central dogma' of regulatory disease variation
-
Stranger BE, Dermitzakis ET. From DNA to RNA to disease and back: the 'central dogma' of regulatory disease variation. Hum Genomics 2006;2:383-90.
-
(2006)
Hum Genomics
, vol.2
, pp. 383-390
-
-
Stranger, B.E.1
Dermitzakis, E.T.2
-
2
-
-
60349092402
-
Mapping complex disease traits with global gene expression
-
Cookson W, Liang L, Abecasis G, et al. Mapping complex disease traits with global gene expression. Nat Rev Genet 2009;10:184-94.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 184-194
-
-
Cookson, W.1
Liang, L.2
Abecasis, G.3
-
4
-
-
84864553255
-
Pre-mRNA splicing: role of epigenetics and implications in disease
-
Khan DH, Jahan S, Davie JR. Pre-mRNA splicing: role of epigenetics and implications in disease. Adv BiolRegul 2012; 52:377-88.
-
(2012)
Adv BiolRegul
, vol.52
, pp. 377-388
-
-
Khan, D.H.1
Jahan, S.2
Davie, J.R.3
-
5
-
-
84863621527
-
Cancer epigenetics: from mechanism to therapy
-
Dawson MA, Kouzarides T. Cancer epigenetics: from mechanism to therapy. Cell 2012;150:12-27.
-
(2012)
Cell
, vol.150
, pp. 12-27
-
-
Dawson, M.A.1
Kouzarides, T.2
-
6
-
-
84975795680
-
An integrated map of genetic variation from 1,092 human genomes
-
Abecasis GR, Auton A, Brooks LD, et al. An integrated map of genetic variation from 1,092 human genomes. Nature 2012;491:56-65.
-
(2012)
Nature
, vol.491
, pp. 56-65
-
-
Abecasis, G.R.1
Auton, A.2
Brooks, L.D.3
-
7
-
-
33847698971
-
The relationship between non-protein-coding DNA and eukaryotic complexity
-
Taft RJ, Pheasant M, Mattick JS. The relationship between non-protein-coding DNA and eukaryotic complexity. Bioessays 2007;29:288-99.
-
(2007)
Bioessays
, vol.29
, pp. 288-299
-
-
Taft, R.J.1
Pheasant, M.2
Mattick, J.S.3
-
8
-
-
84868320535
-
Whole-exome sequencing combined with functional genomics reveals novel candidate driver cancer genes in endometrial cancer
-
Liang H, Cheung LW, Li J, et al. Whole-exome sequencing combined with functional genomics reveals novel candidate driver cancer genes in endometrial cancer. Genome Res 2012;22:2120-9.
-
(2012)
Genome Res
, vol.22
, pp. 2120-2129
-
-
Liang, H.1
Cheung, L.W.2
Li, J.3
-
9
-
-
84864397328
-
Exome sequencing of extreme phenotypes identifies DCTN4 as a modifier of chronic Pseudomonas aeruginosa infection in cystic fibrosis
-
Emond MJ, Louie T, Emerson J, et al. Exome sequencing of extreme phenotypes identifies DCTN4 as a modifier of chronic Pseudomonas aeruginosa infection in cystic fibrosis. Nat Genet 2012;44:886-9.
-
(2012)
Nat Genet
, vol.44
, pp. 886-889
-
-
Emond, M.J.1
Louie, T.2
Emerson, J.3
-
10
-
-
84863556835
-
Evolution and functional impact of rare coding variation from deep sequencing of human exomes
-
Tennessen JA, Bigham AW, O'Connor TD, etal. Evolution and functional impact of rare coding variation from deep sequencing of human exomes. Science 2012;337:64-9.
-
(2012)
Science
, vol.337
, pp. 64-69
-
-
Tennessen, J.A.1
Bigham, A.W.2
O'Connor, T.D.3
-
11
-
-
15544377794
-
Molecular and evolutionary basis of the cellular stress response
-
Kultz D. Molecular and evolutionary basis of the cellular stress response. Ann Rev Physiol 2005;67:225-57.
-
(2005)
Ann Rev Physiol
, vol.67
, pp. 225-257
-
-
Kultz, D.1
-
12
-
-
65649092633
-
The genetic signatures of noncoding RNAs
-
Mattick JS. The genetic signatures of noncoding RNAs. PLoS Genet 2009;5:e1000459.
-
(2009)
PLoS Genet
, vol.5
-
-
Mattick, J.S.1
-
13
-
-
77954407332
-
Genomewide association studies and assessment of the risk of disease
-
Manolio TA. Genomewide association studies and assessment of the risk of disease. NEnglJMed 2010;363:166-76.
-
(2010)
NEnglJMed
, vol.363
, pp. 166-176
-
-
Manolio, T.A.1
-
14
-
-
84864627693
-
Personal and population genomics of human regulatory variation
-
Vernot B, Stergachis AB, Maurano MT, et al. Personal and population genomics of human regulatory variation. Genome Res 2012;22:1689-97.
-
(2012)
Genome Res
, vol.22
, pp. 1689-1697
-
-
Vernot, B.1
Stergachis, A.B.2
Maurano, M.T.3
-
15
-
-
84865777825
-
Linking disease associations with regulatory information in the human genome
-
Schaub MA, Boyle AP, Kundaje A, et al. Linking disease associations with regulatory information in the human genome. GenomeRes 2012;22:1748-59.
-
(2012)
GenomeRes
, vol.22
, pp. 1748-1759
-
-
Schaub, M.A.1
Boyle, A.P.2
Kundaje, A.3
-
16
-
-
46149104377
-
Evo-devo and an expanding evolutionary synthesis: a genetic theory of morphological evolution
-
Carroll SB. Evo-devo and an expanding evolutionary synthesis: a genetic theory of morphological evolution. Cell 2008;134:25-36.
-
(2008)
Cell
, vol.134
, pp. 25-36
-
-
Carroll, S.B.1
-
17
-
-
83455243198
-
Environmentsensitive epigenetics and the heritability of complex diseases
-
Furrow RE, Christiansen FB, Feldman MW. Environmentsensitive epigenetics and the heritability of complex diseases. Genetics 2011;189:1377-87.
-
(2011)
Genetics
, vol.189
, pp. 1377-1387
-
-
Furrow, R.E.1
Christiansen, F.B.2
Feldman, M.W.3
-
18
-
-
56949091456
-
Noncoding RNA in development
-
Amaral PP, Mattick JS. Noncoding RNA in development. Mamm Genome 2008;19:454-92.
-
(2008)
Mamm Genome
, vol.19
, pp. 454-492
-
-
Amaral, P.P.1
Mattick, J.S.2
-
19
-
-
28044471565
-
MicroRNA functions in animal development and human disease
-
Alvarez-Garcia I, Miska EA. MicroRNA functions in animal development and human disease. Development 2005;132:4653-62.
-
(2005)
Development
, vol.132
, pp. 4653-4662
-
-
Alvarez-Garcia, I.1
Miska, E.A.2
-
20
-
-
84860324470
-
Roles for microRNAs in conferring robustness to biological processes
-
Ebert MS, Sharp PA. Roles for microRNAs in conferring robustness to biological processes. Cell 2012; 149:515-24.
-
(2012)
Cell
, vol.149
, pp. 515-524
-
-
Ebert, M.S.1
Sharp, P.A.2
-
21
-
-
84865757142
-
Landscape of transcription in human cells
-
Djebali S, Davis CA, Merkel A, etal. Landscape of transcription in human cells. Nature 2012;489:101-8.
-
(2012)
Nature
, vol.489
, pp. 101-108
-
-
Djebali, S.1
Davis, C.A.2
Merkel, A.3
-
23
-
-
80052978224
-
Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
-
CabiliMN, Trapnell C, Goff L, etal. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. GenesDev 2011;25:1915-27.
-
(2011)
GenesDev
, vol.25
, pp. 1915-1927
-
-
Cabili, M.N.1
Trapnell, C.2
Goff, L.3
-
24
-
-
10744226888
-
Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs
-
Cawley S, Bekiranov S, Ng HH, etal. Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs. Cell 2004;116:499-509.
-
(2004)
Cell
, vol.116
, pp. 499-509
-
-
Cawley, S.1
Bekiranov, S.2
Ng, H.H.3
-
25
-
-
33847193479
-
Androgen responsive intronic non-coding RNAs
-
Louro R, Nakaya HI, Amaral PP, etal. Androgen responsive intronic non-coding RNAs. BMC Biol 2007;5:4.
-
(2007)
BMC Biol
, vol.5
, pp. 4
-
-
Louro, R.1
Nakaya, H.I.2
Amaral, P.P.3
-
26
-
-
29244485152
-
Identification and expression analysis of putative mRNA-like non-coding RNA in Drosophila
-
Inagaki S, Numata K, Kondo T, et al. Identification and expression analysis of putative mRNA-like non-coding RNA in Drosophila. Genes Cells 2005;10:1163-73.
-
(2005)
Genes Cells
, vol.10
, pp. 1163-1173
-
-
Inagaki, S.1
Numata, K.2
Kondo, T.3
-
27
-
-
38649114329
-
Specific expression of long noncoding RNAs in the mouse brain
-
Mercer TR, Dinger ME, Sunkin SM, et al. Specific expression of long noncoding RNAs in the mouse brain. ProcNatl Acad SciUSA 2008;105:716-21.
-
(2008)
ProcNatl Acad SciUSA
, vol.105
, pp. 716-721
-
-
Mercer, T.R.1
Dinger, M.E.2
Sunkin, S.M.3
-
28
-
-
84865727393
-
The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression
-
Derrien T, Johnson R, Bussotti G, et al. The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression. Genome Res 2012;22:1775-89.
-
(2012)
Genome Res
, vol.22
, pp. 1775-1789
-
-
Derrien, T.1
Johnson, R.2
Bussotti, G.3
-
30
-
-
24644519490
-
The transcriptional landscape of the mammalian genome
-
Carninci P, Kasukawa T, Katayama S, et al. The transcriptional landscape of the mammalian genome. Science 2005; 309:1559-63.
-
(2005)
Science
, vol.309
, pp. 1559-1563
-
-
Carninci, P.1
Kasukawa, T.2
Katayama, S.3
-
31
-
-
29444457713
-
Rapid evolution of noncoding RNAs: lack of conservation does not mean lack of function
-
Pang KC, Frith MC, Mattick JS. Rapid evolution of noncoding RNAs: lack of conservation does not mean lack of function. TrendsGenet 2006;22:1-5.
-
(2006)
TrendsGenet
, vol.22
, pp. 1-5
-
-
Pang, K.C.1
Frith, M.C.2
Mattick, J.S.3
-
32
-
-
34248162440
-
Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs
-
Ponjavic J, Ponting CP, Lunter G. Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs. GenomeRes 2007;17:556-65.
-
(2007)
GenomeRes
, vol.17
, pp. 556-565
-
-
Ponjavic, J.1
Ponting, C.P.2
Lunter, G.3
-
33
-
-
84864629645
-
Rapid turnover of long noncoding RNAs and the evolution of gene expression
-
Kutter C, Watt S, Stefflova K, et al. Rapid turnover of long noncoding RNAs and the evolution of gene expression. PLoS Genet 2012;8:e1002841.
-
(2012)
PLoS Genet
, vol.8
-
-
Kutter, C.1
Watt, S.2
Stefflova, K.3
-
34
-
-
84455206362
-
Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution
-
Ulitsky I, Shkumatava A, Jan CH, et al. Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution. Cell 2011;147:1537-50.
-
(2011)
Cell
, vol.147
, pp. 1537-1550
-
-
Ulitsky, I.1
Shkumatava, A.2
Jan, C.H.3
-
35
-
-
27944464131
-
Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome
-
Washietl S, Hofacker IL, Lukasser M, et al. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. Nat Biotechnol 2005;23:1383-90.
-
(2005)
Nat Biotechnol
, vol.23
, pp. 1383-1390
-
-
Washietl, S.1
Hofacker, I.L.2
Lukasser, M.3
-
36
-
-
84878434947
-
Structure-based whole genome realignment reveals many novel non-coding RNAs
-
[Epub ahead of print].
-
Will S, Yu M, Berger B. Structure-based whole genome realignment reveals many novel non-coding RNAs. Genome Res 2013 [Epub ahead of print].
-
(2013)
Genome Res
-
-
Will, S.1
Yu, M.2
Berger, B.3
-
37
-
-
80053045739
-
Molecular mechanisms of long noncoding RNAs
-
Wang KC, Chang HY. Molecular mechanisms of long noncoding RNAs. Mol Cell 2011;43:904-14.
-
(2011)
Mol Cell
, vol.43
, pp. 904-914
-
-
Wang, K.C.1
Chang, H.Y.2
-
38
-
-
84874025014
-
The NeST long ncRNA controls microbial susceptibility and epigenetic activation of the interferon-gamma locus
-
Gomez JA, Wapinski OL, Yang YW, et al. The NeST long ncRNA controls microbial susceptibility and epigenetic activation of the interferon-gamma locus. Cell 2013;152:743-54.
-
(2013)
Cell
, vol.152
, pp. 743-754
-
-
Gomez, J.A.1
Wapinski, O.L.2
Yang, Y.W.3
-
39
-
-
84860581983
-
Genomewide analysis of long noncoding RNA stability
-
Clark M, Johnston R, Inostroza-Ponta M, et al. Genomewide analysis of long noncoding RNA stability. GenomeRes 2012;21:885-98.
-
(2012)
GenomeRes
, vol.21
, pp. 885-898
-
-
Clark, M.1
Johnston, R.2
Inostroza-Ponta, M.3
-
40
-
-
77952479722
-
Characterizing light-regulated retinal microRNAs reveals rapid turnover as a common property of neuronal microRNAs
-
Krol J, Busskamp V, Markiewicz I, et al. Characterizing light-regulated retinal microRNAs reveals rapid turnover as a common property of neuronal microRNAs. Cell 2010;141:618-31.
-
(2010)
Cell
, vol.141
, pp. 618-631
-
-
Krol, J.1
Busskamp, V.2
Markiewicz, I.3
-
41
-
-
62349089764
-
Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays
-
Hazen SP, Naef F, Quisel T, et al. Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays. Genome Biol 2009;10:R17.
-
(2009)
Genome Biol
, vol.10
-
-
Hazen, S.P.1
Naef, F.2
Quisel, T.3
-
42
-
-
84865188054
-
Circadian changes in long noncoding RNAs in the pineal gland
-
Coon SL, Munson PJ, Cherukuri PF, et al. Circadian changes in long noncoding RNAs in the pineal gland. ProcNatl Acad SciUSA 2012;109:13319-24.
-
(2012)
ProcNatl Acad SciUSA
, vol.109
, pp. 13319-13324
-
-
Coon, S.L.1
Munson, P.J.2
Cherukuri, P.F.3
-
43
-
-
38049155825
-
Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA
-
Yu W, Gius D, Onyango P, et al. Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA. Nature 2008;451:202-6.
-
(2008)
Nature
, vol.451
, pp. 202-206
-
-
Yu, W.1
Gius, D.2
Onyango, P.3
-
44
-
-
62249133709
-
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
-
Guttman M, Amit I, Garber M, et al. Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals. Nature 2009;458:223-7.
-
(2009)
Nature
, vol.458
, pp. 223-227
-
-
Guttman, M.1
Amit, I.2
Garber, M.3
-
45
-
-
84869052718
-
Cis-acting noncoding RNAs: friends and foes
-
Guil S, Esteller M. Cis-acting noncoding RNAs: friends and foes. Nat StructMol Biol 2012;19:1068-75.
-
(2012)
Nat StructMol Biol
, vol.19
, pp. 1068-1075
-
-
Guil, S.1
Esteller, M.2
-
46
-
-
34250729138
-
Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs
-
Rinn JL, Kertesz M, Wang JK, et al. Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs. Cell 2007;129:1311-23.
-
(2007)
Cell
, vol.129
, pp. 1311-1323
-
-
Rinn, J.L.1
Kertesz, M.2
Wang, J.K.3
-
47
-
-
84871060911
-
Airn transcriptional overlap, but not its lncRNA products, induces imprinted Igf2r silencing
-
Latos PA, Pauler FM, Koerner MV, et al. Airn transcriptional overlap, but not its lncRNA products, induces imprinted Igf2r silencing. Science 2012;338: 1469-72.
-
(2012)
Science
, vol.338
, pp. 1469-1472
-
-
Latos, P.A.1
Pauler, F.M.2
Koerner, M.V.3
-
48
-
-
33846930357
-
Repression of the human dihydrofolate reductase gene by a non-coding interfering transcript
-
Martianov I, Ramadass A, Serra Barros A, et al. Repression of the human dihydrofolate reductase gene by a non-coding interfering transcript. Nature 2007;445:666-70.
-
(2007)
Nature
, vol.445
, pp. 666-670
-
-
Martianov, I.1
Ramadass, A.2
Serra Barros, A.3
-
49
-
-
56549111129
-
The Air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin
-
Nagano T, Mitchell JA, Sanz LA, et al. The Air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin. Science 2008;322:1717-20.
-
(2008)
Science
, vol.322
, pp. 1717-1720
-
-
Nagano, T.1
Mitchell, J.A.2
Sanz, L.A.3
-
50
-
-
84861904178
-
Genome regulation by long noncoding RNAs
-
Rinn JL, Chang HY. Genome regulation by long noncoding RNAs. Annu Rev Biochem 2012;81:145-66.
-
(2012)
Annu Rev Biochem
, vol.81
, pp. 145-166
-
-
Rinn, J.L.1
Chang, H.Y.2
-
51
-
-
60149089144
-
Regulatory RNAs in bacteria
-
Waters LS, Storz G. Regulatory RNAs in bacteria. Cell 2009;136:615-28.
-
(2009)
Cell
, vol.136
, pp. 615-628
-
-
Waters, L.S.1
Storz, G.2
-
52
-
-
84867095346
-
Regulation of bacterial photosynthesis genes by the small noncoding RNA PcrZ
-
Mank NN, Berghoff BA, Hermanns YN, et al. Regulation of bacterial photosynthesis genes by the small noncoding RNA PcrZ. ProcNatl Acad SciUSA 2012;109:16306-11.
-
(2012)
ProcNatl Acad SciUSA
, vol.109
, pp. 16306-16311
-
-
Mank, N.N.1
Berghoff, B.A.2
Hermanns, Y.N.3
-
53
-
-
57349189421
-
Small toxic proteins and the antisense RNAs that repress them
-
Fozo EM, Hemm MR, Storz G. Small toxic proteins and the antisense RNAs that repress them. MicrobiolMolBiolRev 2008;72:579-89.
-
(2008)
MicrobiolMolBiolRev
, vol.72
, pp. 579-589
-
-
Fozo, E.M.1
Hemm, M.R.2
Storz, G.3
-
54
-
-
84860822263
-
Meiosis-specific noncoding RNA mediates robust pairing of homologous chromosomes in meiosis
-
Ding DQ, Okamasa K, Yamane M, et al. Meiosis-specific noncoding RNA mediates robust pairing of homologous chromosomes in meiosis. Science 2012;336:732-6.
-
(2012)
Science
, vol.336
, pp. 732-736
-
-
Ding, D.Q.1
Okamasa, K.2
Yamane, M.3
-
55
-
-
70849098812
-
Toggle involving cis-interfering noncoding RNAs controls variegated gene expression in yeast
-
Bumgarner SL, Dowell RD, Grisafi P, et al. Toggle involving cis-interfering noncoding RNAs controls variegated gene expression in yeast. Proc Natl Acad Sci USA 2009;106: 18321-6.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 18321-18326
-
-
Bumgarner, S.L.1
Dowell, R.D.2
Grisafi, P.3
-
56
-
-
0027940238
-
pombe mei2p encodes an RNA-binding protein essential for premeiotic DNA synthesis and meiosis I, which cooperates with a novel RNA species meiRNA
-
Watanabe Y, Yamamoto M. S. pombe mei2p encodes an RNA-binding protein essential for premeiotic DNA synthesis and meiosis I, which cooperates with a novel RNA species meiRNA. Cell 1994;78:487-98.
-
(1994)
Cell
, vol.78
, pp. 487-498
-
-
Watanabe, Y.1
Yamamoto, M.S.2
-
57
-
-
82555179131
-
A conserved regulatory role for antisense RNA in meiotic gene expression in yeast
-
Chen HM, Neiman AM. A conserved regulatory role for antisense RNA in meiotic gene expression in yeast. Curr OpinMicrobiol 2011;14:655-9.
-
(2011)
Curr OpinMicrobiol
, vol.14
, pp. 655-659
-
-
Chen, H.M.1
Neiman, A.M.2
-
59
-
-
84876546175
-
Advances in understanding chromosome silencing by the long non-coding RNA Xist
-
Sado T, Brockdorff N. Advances in understanding chromosome silencing by the long non-coding RNA Xist. Philos Trans RSoc Lond B Biol Sci 2013;368:20110325.
-
(2013)
Philos Trans RSoc Lond B Biol Sci
, vol.368
, pp. 20110325
-
-
Sado, T.1
Brockdorff, N.2
-
60
-
-
46249096804
-
Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution
-
Wilhelm BT, Marguerat S, Watt S, etal. Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution. Nature 2008;453:1239-43.
-
(2008)
Nature
, vol.453
, pp. 1239-1243
-
-
Wilhelm, B.T.1
Marguerat, S.2
Watt, S.3
-
61
-
-
84864098110
-
Identification and properties of 1,119 candidate lincRNA loci in the Drosophila melanogaster genome
-
Young RS, Marques AC, Tibbit C, et al. Identification and properties of 1,119 candidate lincRNA loci in the Drosophila melanogaster genome. Genome Biol Evol 2012;4: 427-42.
-
(2012)
Genome Biol Evol
, vol.4
, pp. 427-442
-
-
Young, R.S.1
Marques, A.C.2
Tibbit, C.3
-
62
-
-
84857836107
-
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis
-
Pauli A, Valen E, Lin MF, et al. Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis. Genome Res 2012;22:577-91.
-
(2012)
Genome Res
, vol.22
, pp. 577-591
-
-
Pauli, A.1
Valen, E.2
Lin, M.F.3
-
63
-
-
84255160602
-
Long noncoding RNAmediated anti-apoptotic activity in murine erythroid terminal differentiation
-
Hu W, Yuan B, Flygare J, et al. Long noncoding RNAmediated anti-apoptotic activity in murine erythroid terminal differentiation. Genes Dev 2011;25:2573-8.
-
(2011)
Genes Dev
, vol.25
, pp. 2573-2578
-
-
Hu, W.1
Yuan, B.2
Flygare, J.3
-
64
-
-
84870479616
-
Long non-coding RNA gadd7 interacts with TDP-43 and regulates Cdk6 mRNA decay
-
Liu X, Li D, Zhang W, etal. Long non-coding RNA gadd7 interacts with TDP-43 and regulates Cdk6 mRNA decay. EMBOJ 2012;31:4415-27.
-
(2012)
EMBOJ
, vol.31
, pp. 4415-4427
-
-
Liu, X.1
Li, D.2
Zhang, W.3
-
65
-
-
79959756263
-
Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters
-
Hung T, Wang Y, Lin MF, et al. Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters. Nat Genet 2011;43:621-9.
-
(2011)
Nat Genet
, vol.43
, pp. 621-629
-
-
Hung, T.1
Wang, Y.2
Lin, M.F.3
-
66
-
-
81055140863
-
ncRNA- and Pc2 methylationdependent gene relocation between nuclear structures mediates gene activation programs
-
Yang L, Lin C, Liu W, et al. ncRNA- and Pc2 methylationdependent gene relocation between nuclear structures mediates gene activation programs. Cell 2011;147:773-88.
-
(2011)
Cell
, vol.147
, pp. 773-788
-
-
Yang, L.1
Lin, C.2
Liu, W.3
-
67
-
-
84868683051
-
Regulation of mammalian cell differentiation by long non-coding RNAs
-
Hu W, Alvarez-Dominguez JR, Lodish HF. Regulation of mammalian cell differentiation by long non-coding RNAs. EMBORep 2012;13:971-83.
-
(2012)
EMBORep
, vol.13
, pp. 971-983
-
-
Hu, W.1
Alvarez-Dominguez, J.R.2
Lodish, H.F.3
-
68
-
-
78649467088
-
Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells
-
Loewer S, Cabili MN, Guttman M, et al. Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells. Nat Genet 2010;42: 1113-7.
-
(2010)
Nat Genet
, vol.42
, pp. 1113-1117
-
-
Loewer, S.1
Cabili, M.N.2
Guttman, M.3
-
69
-
-
84864607981
-
Pregnancyinduced noncoding RNA (PINC) associates with polycomb repressive complex 2 and regulates mammary epithelial differentiation
-
Shore AN, Kabotyanski EB, Roarty K, et al. Pregnancyinduced noncoding RNA (PINC) associates with polycomb repressive complex 2 and regulates mammary epithelial differentiation. PLoS Genet 2012;8:e1002840.
-
(2012)
PLoS Genet
, vol.8
-
-
Shore, A.N.1
Kabotyanski, E.B.2
Roarty, K.3
-
70
-
-
84872135457
-
Control of somatic tissue differentiation by the long non-coding RNA TINCR
-
Kretz M, Siprashvili Z, Chu C, et al. Control of somatic tissue differentiation by the long non-coding RNA TINCR. Nature 2013;493:231-5.
-
(2013)
Nature
, vol.493
, pp. 231-235
-
-
Kretz, M.1
Siprashvili, Z.2
Chu, C.3
-
71
-
-
77952581350
-
Long non-coding RNAs in nervous system function and disease
-
Qureshi IA, Mattick JS, Mehler MF. Long non-coding RNAs in nervous system function and disease. Brain Res 2010;1338:20-35.
-
(2010)
Brain Res
, vol.1338
, pp. 20-35
-
-
Qureshi, I.A.1
Mattick, J.S.2
Mehler, M.F.3
-
72
-
-
84871193053
-
The novel long non-coding RNA CRG regulates Drosophila locomotor behavior
-
Li M, Wen S, Guo X, et al. The novel long non-coding RNA CRG regulates Drosophila locomotor behavior. Nucleic Acids Res 2012;40:11714-27.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 11714-11727
-
-
Li, M.1
Wen, S.2
Guo, X.3
-
73
-
-
80053984236
-
A conserved long noncoding RNA affects sleep behavior in Drosophila
-
Soshnev AA, Ishimoto H, McAllister BF, et al. A conserved long noncoding RNA affects sleep behavior in Drosophila. Genetics 2011;189:455-68.
-
(2011)
Genetics
, vol.189
, pp. 455-468
-
-
Soshnev, A.A.1
Ishimoto, H.2
McAllister, B.F.3
-
74
-
-
80053444842
-
Tsx produces a long noncoding RNA and has general functions in the germline, stem cells, and brain
-
Anguera MC, Ma W, Clift D, et al. Tsx produces a long noncoding RNA and has general functions in the germline, stem cells, and brain. PLoS Genet 2011;7:e1002248.
-
(2011)
PLoS Genet
, vol.7
-
-
Anguera, M.C.1
Ma, W.2
Clift, D.3
-
75
-
-
3943107461
-
Role of a neuronal small non-messenger RNA: behavioural alterations in BC1 RNA-deleted mice
-
Lewejohann L, Skryabin BV, Sachser N, et al. Role of a neuronal small non-messenger RNA: behavioural alterations in BC1 RNA-deleted mice. Behav Brain Res 2004; 154:273-89.
-
(2004)
Behav Brain Res
, vol.154
, pp. 273-289
-
-
Lewejohann, L.1
Skryabin, B.V.2
Sachser, N.3
-
76
-
-
45849144806
-
SnoRNA Snord116 (Pwcr1/ MBII-85) deletion causes growth deficiency and hyperphagia in mice
-
Ding F, Li HH, Zhang S, et al. SnoRNA Snord116 (Pwcr1/ MBII-85) deletion causes growth deficiency and hyperphagia in mice. PLoSONE 2008;3:e1709.
-
(2008)
PLoSONE
, vol.3
-
-
Ding, F.1
Li, H.H.2
Zhang, S.3
-
77
-
-
0028370014
-
H19, a tumour suppressing RNA?
-
Wrana JL. H19, a tumour suppressing RNA? Bioessays 1994; 16:89-90.
-
(1994)
Bioessays
, vol.16
, pp. 89-90
-
-
Wrana, J.L.1
-
78
-
-
77952700235
-
The H19 locus: role of an imprinted non-coding RNA in growth and development
-
Gabory A, Jammes H, Dandolo L. The H19 locus: role of an imprinted non-coding RNA in growth and development. Bioessays 2010;32:473-80.
-
(2010)
Bioessays
, vol.32
, pp. 473-480
-
-
Gabory, A.1
Jammes, H.2
Dandolo, L.3
-
79
-
-
84876714385
-
Long non-coding RNA H19 increases bladder cancer metastasis by associating with EZH2 and inhibiting E-cadherin expression
-
Luo M, Li Z, Wang W, et al. Long non-coding RNA H19 increases bladder cancer metastasis by associating with EZH2 and inhibiting E-cadherin expression. Cancer Lett 2013;333: 213-21.
-
(2013)
Cancer Lett
, vol.333
, pp. 213-221
-
-
Luo, M.1
Li, Z.2
Wang, W.3
-
80
-
-
79957840356
-
Long noncoding RNAs and human disease
-
Wapinski O, Chang HY. Long noncoding RNAs and human disease. Trends Cell Biol 2011;21:354-61. 81. Esteller M. Non-coding RNAs in human disease. Nat Rev Genet 2011;12:861-74.
-
(2011)
Trends Cell Biol
, vol.21
, pp. 354-361
-
-
Wapinski, O.1
Chang, H.Y.2
-
81
-
-
81355142141
-
Non-coding RNAs in human disease
-
Esteller M. Non-coding RNAs in human disease. Nat Rev Genet 2011;12:861-74.
-
(2011)
Nat Rev Genet
, vol.12
, pp. 861-874
-
-
Esteller, M.1
-
82
-
-
84863495094
-
The Hallmarks of Cancer: A long non-coding RNA point of view
-
Gutschner T, Diederichs S. The Hallmarks of Cancer: A long non-coding RNA point of view. RNA Biol 2012;9: 703-19.
-
(2012)
RNA Biol
, vol.9
, pp. 703-719
-
-
Gutschner, T.1
Diederichs, S.2
-
84
-
-
84876125829
-
LncRNADisease: a database for long-non-coding RNA-associated diseases
-
Chen G, Wang Z, Wang D, et al. LncRNADisease: a database for long-non-coding RNA-associated diseases. Nucleic Acids Res 2013;41:D983-6.
-
(2013)
Nucleic Acids Res
, vol.41
-
-
Chen, G.1
Wang, Z.2
Wang, D.3
-
85
-
-
33744908017
-
Regulation of antisense RNA expression during cardiac MHC gene switching in response to pressure overload
-
Haddad F, Qin AX, Bodell PW, et al. Regulation of antisense RNA expression during cardiac MHC gene switching in response to pressure overload. AmJ PhysiolHeartCirc Physiol 2006;290:H2351-61.
-
(2006)
AmJ PhysiolHeartCirc Physiol
, vol.290
-
-
Haddad, F.1
Qin, A.X.2
Bodell, P.W.3
-
86
-
-
34249275013
-
Activity of the betamyosin heavy chain antisense promoter responds to diabetes and hypothyroidism
-
Giger J, Qin AX, Bodell PW, et al. Activity of the betamyosin heavy chain antisense promoter responds to diabetes and hypothyroidism. Am J Physiol Heart Circ Physiol 2007;292:H3065-71.
-
(2007)
Am J Physiol Heart Circ Physiol
, vol.292
-
-
Giger, J.1
Qin, A.X.2
Bodell, P.W.3
-
87
-
-
84874645551
-
The human long noncoding RNA-RoR is a p53 repressor in response to DNA damage
-
Zhang A, Zhou N, Huang J, et al. The human long noncoding RNA-RoR is a p53 repressor in response to DNA damage. Cell Res 2013;23:340-50.
-
(2013)
Cell Res
, vol.23
, pp. 340-350
-
-
Zhang, A.1
Zhou, N.2
Huang, J.3
-
88
-
-
34548304069
-
Activation of p53 by MEG3 non-coding RNA
-
Zhou Y, Zhong Y, Wang Y, et al. Activation of p53 by MEG3 non-coding RNA. J Biol Chem 2007;282:24731-42.
-
(2007)
J Biol Chem
, vol.282
, pp. 24731-24742
-
-
Zhou, Y.1
Zhong, Y.2
Wang, Y.3
-
89
-
-
77950193818
-
Maternally expressed gene 3, an imprinted noncoding RNA gene, is associated with meningioma pathogenesis and progression
-
Zhang X, Gejman R, Mahta A, et al. Maternally expressed gene 3, an imprinted noncoding RNA gene, is associated with meningioma pathogenesis and progression. Cancer Res 2010;70:2350-8.
-
(2010)
Cancer Res
, vol.70
, pp. 2350-2358
-
-
Zhang, X.1
Gejman, R.2
Mahta, A.3
-
90
-
-
60549107869
-
Wrap53, a natural p53 antisense transcript required for p53 induction upon DNA damage
-
Mahmoudi S, Henriksson S, Corcoran M, et al. Wrap53, a natural p53 antisense transcript required for p53 induction upon DNA damage. Mol Cell 2009;33:462-71.
-
(2009)
Mol Cell
, vol.33
, pp. 462-471
-
-
Mahmoudi, S.1
Henriksson, S.2
Corcoran, M.3
-
91
-
-
77953957633
-
A coding-independent function of gene and pseudogene mRNAs regulates tumour biology
-
Poliseno L, Salmena L, Zhang J, et al. A coding-independent function of gene and pseudogene mRNAs regulates tumour biology. Nature 2010;465:1033-8.
-
(2010)
Nature
, vol.465
, pp. 1033-1038
-
-
Poliseno, L.1
Salmena, L.2
Zhang, J.3
-
92
-
-
84876177255
-
A pseudogene long-noncoding-RNA network regulates PTEN transcription and translation in human cells
-
Johnsson P, Ackley A, Vidarsdottir L, et al. A pseudogene long-noncoding-RNA network regulates PTEN transcription and translation in human cells. Nat StructMol Biol 2013; 20:440-6.
-
(2013)
Nat StructMol Biol
, vol.20
, pp. 440-446
-
-
Johnsson, P.1
Ackley, A.2
Vidarsdottir, L.3
-
93
-
-
84871290732
-
Long intergenic noncoding RNA HOTAIR is overexpressed and regulates PTEN methylation in laryngeal squamous cell carcinoma
-
Li D, Feng J, Wu T, etal. Long intergenic noncoding RNA HOTAIR is overexpressed and regulates PTEN methylation in laryngeal squamous cell carcinoma. Am J Pathol 2013;182:64-70.
-
(2013)
Am J Pathol
, vol.182
, pp. 64-70
-
-
Li, D.1
Feng, J.2
Wu, T.3
-
94
-
-
77951118936
-
Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis
-
Gupta RA, Shah N, Wang KC, et al. Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis. Nature 2010;464:1071-6.
-
(2010)
Nature
, vol.464
, pp. 1071-1076
-
-
Gupta, R.A.1
Shah, N.2
Wang, K.C.3
-
95
-
-
80054029971
-
Long noncoding RNA HOTAIR regulates polycomb-dependent chromatin modification and is associated with poor prognosis in colorectal cancers
-
Kogo R, Shimamura T, Mimori K, et al. Long noncoding RNA HOTAIR regulates polycomb-dependent chromatin modification and is associated with poor prognosis in colorectal cancers. Cancer Res 2011;71:6320-6.
-
(2011)
Cancer Res
, vol.71
, pp. 6320-6326
-
-
Kogo, R.1
Shimamura, T.2
Mimori, K.3
-
96
-
-
84555208731
-
Large intervening non-coding RNA HOTAIR is associated with hepatocellular carcinoma progression
-
Geng YJ, Xie SL, Li Q, etal. Large intervening non-coding RNA HOTAIR is associated with hepatocellular carcinoma progression. J IntMedRes 2011;39:2119-28.
-
(2011)
J IntMedRes
, vol.39
, pp. 2119-2128
-
-
Geng, Y.J.1
Xie, S.L.2
Li, Q.3
-
97
-
-
84874053510
-
Xist RNA is a potent suppressor of hematologic cancer in mice
-
Yildirim E, Kirby JE, Brown DE, et al. Xist RNA is a potent suppressor of hematologic cancer in mice. Cell 2013;152:727-42.
-
(2013)
Cell
, vol.152
, pp. 727-742
-
-
Yildirim, E.1
Kirby, J.E.2
Brown, D.E.3
-
98
-
-
84875177348
-
X-Inactivation, imprinting, and long noncoding RNAs in health and disease
-
Lee JT, Bartolomei MS. X-Inactivation, imprinting, and long noncoding RNAs in health and disease. Cell 2013; 152:1308-23.
-
(2013)
Cell
, vol.152
, pp. 1308-1323
-
-
Lee, J.T.1
Bartolomei, M.S.2
-
99
-
-
77956927823
-
The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation
-
Tripathi V, Ellis JD, Shen Z, et al. The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation. Mol Cell 2010;39:925-38.
-
(2010)
Mol Cell
, vol.39
, pp. 925-938
-
-
Tripathi, V.1
Ellis, J.D.2
Shen, Z.3
-
100
-
-
41149112564
-
A natural antisense transcript regulates Zeb2/Sip1 gene expression during Snail1-induced epithelial-mesenchymal transition
-
Beltran M, Puig I, Pena C, et al. A natural antisense transcript regulates Zeb2/Sip1 gene expression during Snail1-induced epithelial-mesenchymal transition. Genes Dev 2008;22:756-69.
-
(2008)
Genes Dev
, vol.22
, pp. 756-769
-
-
Beltran, M.1
Puig, I.2
Pena, C.3
-
101
-
-
80054715378
-
A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA
-
Cesana M, Cacchiarelli D, Legnini I, et al. A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA. Cell 2011;147:358-69.
-
(2011)
Cell
, vol.147
, pp. 358-369
-
-
Cesana, M.1
Cacchiarelli, D.2
Legnini, I.3
-
102
-
-
84875369248
-
Circular RNAs are a large class of animal RNAs with regulatory potency
-
Memczak S, Jens M, Elefsinioti A, et al. Circular RNAs are a large class of animal RNAs with regulatory potency. Nature 2013;495:333-8.
-
(2013)
Nature
, vol.495
, pp. 333-338
-
-
Memczak, S.1
Jens, M.2
Elefsinioti, A.3
-
103
-
-
84866543760
-
Pseudogenes: newly discovered players in human cancer
-
Poliseno L. Pseudogenes: newly discovered players in human cancer. Sci Signal 2012;5:re5.
-
(2012)
Sci Signal
, vol.5
-
-
Poliseno, L.1
-
104
-
-
84860885909
-
A long ncRNA links copy number variation to a polycomb/trithorax epigenetic switch in FSHD muscular dystrophy
-
Cabianca DS, Casa V, Bodega B, etal. A long ncRNA links copy number variation to a polycomb/trithorax epigenetic switch in FSHD muscular dystrophy. Cell 2012;149: 819-31.
-
(2012)
Cell
, vol.149
, pp. 819-831
-
-
Cabianca, D.S.1
Casa, V.2
Bodega, B.3
-
105
-
-
0038581890
-
Transcription of antisense RNA leading to gene silencing and methylation as a novel cause of human genetic disease
-
Tufarelli C, Stanley JA, Garrick D, et al. Transcription of antisense RNA leading to gene silencing and methylation as a novel cause of human genetic disease. Nat Genet 2003; 34:157-65.
-
(2003)
Nat Genet
, vol.34
, pp. 157-165
-
-
Tufarelli, C.1
Stanley, J.A.2
Garrick, D.3
-
106
-
-
84873045772
-
Molecular characterization of an X(p21.2;q28) chromosomal inversion in a Duchenne muscular dystrophy patient with mental retardation reveals a novel long non-coding gene on Xq28.
-
Tran TH, Zhang Z, Yagi M, et al. Molecular characterization of an X(p21.2;q28) chromosomal inversion in a Duchenne muscular dystrophy patient with mental retardation reveals a novel long non-coding gene on Xq28. Journal ofHuman Genet 2013;58:33-9.
-
(2013)
Journal ofHuman Genet
, vol.58
, pp. 33-39
-
-
Tran, T.H.1
Zhang, Z.2
Yagi, M.3
-
107
-
-
84860454652
-
A de novo balanced t(2;6)(p15;p223) in a patient with West Syndrome disrupts a lnc-RNA.
-
Vandeweyer G, Van der Aa N, Ceulemans B, et al. A de novo balanced t(2;6)(p15;p22.3) in a patient with West Syndrome disrupts a lnc-RNA. EpilepsyRes 2012;99:346-9.
-
(2012)
EpilepsyRes
, vol.99
, pp. 346-349
-
-
Vandeweyer, G.1
Van der Aa, N.2
Ceulemans, B.3
-
108
-
-
84861862859
-
The polymorphism rs944289 predisposes to papillary thyroid carcinoma through a large intergenic noncoding RNA gene of tumor suppressor type
-
Jendrzejewski J, He H, Radomska HS, et al. The polymorphism rs944289 predisposes to papillary thyroid carcinoma through a large intergenic noncoding RNA gene of tumor suppressor type. Proc Natl Acad Sci USA 2012;109: 8646-51.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 8646-8651
-
-
Jendrzejewski, J.1
He, H.2
Radomska, H.S.3
-
109
-
-
0014006159
-
Death in embryonic systems
-
Saunders JW, Jr. Death in embryonic systems. Science 1966; 154:604-12.
-
(1966)
Science
, vol.154
, pp. 604-612
-
-
Saunders, J.W.1
-
110
-
-
0034100836
-
Hypoxia-inducible factor-1 mediates the biological effects of oxygen on human trophoblast differentiation through TGFbeta(3)
-
Caniggia I, Mostachfi H, Winter J, et al. Hypoxia-inducible factor-1 mediates the biological effects of oxygen on human trophoblast differentiation through TGFbeta(3). JClin Invest 2000;105:577-87.
-
(2000)
JClin Invest
, vol.105
, pp. 577-587
-
-
Caniggia, I.1
Mostachfi, H.2
Winter, J.3
-
111
-
-
84859834708
-
Identification and characterization of novel genotoxic stress-inducible nuclear long noncoding RNAs in mammalian cells
-
Mizutani R, Wakamatsu A, Tanaka N, et al. Identification and characterization of novel genotoxic stress-inducible nuclear long noncoding RNAs in mammalian cells. PLoS ONE 2012;7:e34949.
-
(2012)
PLoS ONE
, vol.7
-
-
Mizutani, R.1
Wakamatsu, A.2
Tanaka, N.3
-
112
-
-
84862023238
-
Identification of sense and antisense transcripts regulated by drought in sugarcane
-
Lembke CG, Nishiyama MY, Jr, Sato PM, et al. Identification of sense and antisense transcripts regulated by drought in sugarcane. PlantMol Biol 2012;79:461-77.
-
(2012)
PlantMol Biol
, vol.79
, pp. 461-477
-
-
Lembke, C.G.1
Nishiyama, M.Y.2
Sato, P.M.3
-
113
-
-
61449126060
-
Novel long nonprotein coding RNAs involved in Arabidopsis differentiation and stress responses
-
Ben Amor B, Wirth S, Merchan F, et al. Novel long nonprotein coding RNAs involved in Arabidopsis differentiation and stress responses. GenomeRes 2009;19:57-69.
-
(2009)
GenomeRes
, vol.19
, pp. 57-69
-
-
Ben Amor, B.1
Wirth, S.2
Merchan, F.3
-
114
-
-
78049275325
-
MicroRNAs with macro-effects on plant stress responses
-
Sunkar R. MicroRNAs with macro-effects on plant stress responses. Semin CellDev Biol 2010;21:805-11.
-
(2010)
Semin CellDev Biol
, vol.21
, pp. 805-811
-
-
Sunkar, R.1
-
115
-
-
84868700599
-
Identification of intermediate- size non-coding RNAs involved in the UV-induced DNA damage response in C
-
Li A, Wei G, Wang Y, et al. Identification of intermediate- size non-coding RNAs involved in the UV-induced DNA damage response in C. elegans. PLoS ONE 2012;7:e48066.
-
(2012)
elegans. PLoS ONE
, vol.7
-
-
Li, A.1
Wei, G.2
Wang, Y.3
-
116
-
-
84876962683
-
Stress-induced lncRNAs evade nuclear degradation and enter the translational machinery
-
Galipon J, Miki A, Oda A, et al. Stress-induced lncRNAs evade nuclear degradation and enter the translational machinery. Genes Cells 2013;18:353-68.
-
(2013)
Genes Cells
, vol.18
, pp. 353-368
-
-
Galipon, J.1
Miki, A.2
Oda, A.3
-
117
-
-
84866740972
-
Effect of focal ischemia on long noncoding RNAs
-
Dharap A, Nakka VP, Vemuganti R. Effect of focal ischemia on long noncoding RNAs. Stroke 2012;43:2800-2.
-
(2012)
Stroke
, vol.43
, pp. 2800-2802
-
-
Dharap, A.1
Nakka, V.P.2
Vemuganti, R.3
-
118
-
-
46649093597
-
Induced ncRNAs allosterically modify RNA-binding proteins in cis to inhibit transcription
-
272 Amaral et al.
-
Wang X, Arai S, Song X, et al. Induced ncRNAs allosterically modify RNA-binding proteins in cis to inhibit transcription. Nature 2008;454:126-30. 272 Amaral et al.
-
(2008)
Nature
, vol.454
, pp. 126-130
-
-
Wang, X.1
Arai, S.2
Song, X.3
-
119
-
-
77955323879
-
A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response
-
Huarte M, Guttman M, Feldser D, et al. A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response. Cell 2010;142:409-19.
-
(2010)
Cell
, vol.142
, pp. 409-419
-
-
Huarte, M.1
Guttman, M.2
Feldser, D.3
-
120
-
-
84874969813
-
Long non-coding RNA ANRIL (CDKN2B-AS) is induced by the ATM-E2F1 signaling pathway
-
Wan G, Mathur R, Hu X, et al. Long non-coding RNA ANRIL (CDKN2B-AS) is induced by the ATM-E2F1 signaling pathway. Cell Signal 2013;25:1086-95.
-
(2013)
Cell Signal
, vol.25
, pp. 1086-1095
-
-
Wan, G.1
Mathur, R.2
Hu, X.3
-
121
-
-
77951638287
-
Noncoding RNA gas5 is a growth arrest- and starvation-associated repressor of the glucocorticoid receptor
-
Kino T, Hurt DE, Ichijo T, et al. Noncoding RNA gas5 is a growth arrest- and starvation-associated repressor of the glucocorticoid receptor. Sci Signal 2010;3:ra8.
-
(2010)
Sci Signal
, vol.3
-
-
Kino, T.1
Hurt, D.E.2
Ichijo, T.3
-
122
-
-
20444490380
-
Identification and characterization of a novel gene Saf transcribed from the opposite strand of Fas
-
Yan MD, Hong CC, Lai GM, et al. Identification and characterization of a novel gene Saf transcribed from the opposite strand of Fas. HumMol Genet 2005;14:1465-74.
-
(2005)
HumMol Genet
, vol.14
, pp. 1465-1474
-
-
Yan, M.D.1
Hong, C.C.2
Lai, G.M.3
-
123
-
-
0033585496
-
aHIF: a natural antisense transcript overexpressed in human renal cancer and during hypoxia
-
Thrash-Bingham CA, Tartof KD. aHIF: a natural antisense transcript overexpressed in human renal cancer and during hypoxia. JNatl Cancer Inst 1999;91:143-51.
-
(1999)
JNatl Cancer Inst
, vol.91
, pp. 143-151
-
-
Thrash-Bingham, C.A.1
Tartof, K.D.2
-
124
-
-
2442544693
-
Prolonged hypoxia differentially regulates hypoxia-inducible factor (HIF)- 1alpha and HIF-2alpha expression in lung epithelial cells: implication of natural antisense HIF-1alpha
-
Uchida T, Rossignol F, Matthay MA, etal. Prolonged hypoxia differentially regulates hypoxia-inducible factor (HIF)- 1alpha and HIF-2alpha expression in lung epithelial cells: implication of natural antisense HIF-1alpha. J Biol Chem 2004;279:14871-8.
-
(2004)
J Biol Chem
, vol.279
, pp. 14871-14878
-
-
Uchida, T.1
Rossignol, F.2
Matthay, M.A.3
-
125
-
-
4444258772
-
Natural antisense transcripts of HIF-1alpha are conserved in rodents
-
Rossignol F, de Laplanche E, Mounier R, et al. Natural antisense transcripts of HIF-1alpha are conserved in rodents. Gene 2004;339:121-30.
-
(2004)
Gene
, vol.339
, pp. 121-130
-
-
Rossignol, F.1
de Laplanche, E.2
Mounier, R.3
-
126
-
-
10744225687
-
Elevated expression of PCGEM1, a prostate-specific gene with cell growth-promoting function, is associated with high-risk prostate cancer patients
-
Petrovics G, Zhang W, Makarem M, et al. Elevated expression of PCGEM1, a prostate-specific gene with cell growth-promoting function, is associated with high-risk prostate cancer patients. Oncogene 2004;23:605-11.
-
(2004)
Oncogene
, vol.23
, pp. 605-611
-
-
Petrovics, G.1
Zhang, W.2
Makarem, M.3
-
127
-
-
33645532828
-
Regulation of apoptosis by a prostate-specific and prostate cancer-associated noncoding gene, PCGEM1
-
Fu X, Ravindranath L, Tran N, et al. Regulation of apoptosis by a prostate-specific and prostate cancer-associated noncoding gene, PCGEM1. DNA Cell Biol 2006;25: 135-41.
-
(2006)
DNA Cell Biol
, vol.25
, pp. 135-141
-
-
Fu, X.1
Ravindranath, L.2
Tran, N.3
-
128
-
-
34249014622
-
Induction of drug resistance and transformation in human cancer cells by the noncoding RNA CUDR
-
Tsang WP, Wong TW, Cheung AH, et al. Induction of drug resistance and transformation in human cancer cells by the noncoding RNA CUDR. RNA 2007;13:890-8.
-
(2007)
RNA
, vol.13
, pp. 890-898
-
-
Tsang, W.P.1
Wong, T.W.2
Cheung, A.H.3
-
129
-
-
84862906017
-
Long non-coding RNA UCA1a(CUDR) promotes proliferation and tumorigenesis of bladder cancer
-
Wang Y, Chen W, Yang C, et al. Long non-coding RNA UCA1a(CUDR) promotes proliferation and tumorigenesis of bladder cancer. IntJ Oncol 2012;41:276-84.
-
(2012)
IntJ Oncol
, vol.41
, pp. 276-284
-
-
Wang, Y.1
Chen, W.2
Yang, C.3
-
130
-
-
78649378267
-
MicroRNA functions in stress responses
-
Leung AK, Sharp PA. MicroRNA functions in stress responses. Mol Cell 2010;40:205-15.
-
(2010)
Mol Cell
, vol.40
, pp. 205-215
-
-
Leung, A.K.1
Sharp, P.A.2
-
131
-
-
0030586773
-
adapt33, a novel oxidant- inducible RNA from hamster HA-1 cells
-
Wang Y, Crawford DR, Davies KJ. adapt33, a novel oxidant- inducible RNA from hamster HA-1 cells. Arch Biochem Biophys 1996;332:255-60.
-
(1996)
Arch Biochem Biophys
, vol.332
, pp. 255-260
-
-
Wang, Y.1
Crawford, D.R.2
Davies, K.J.3
-
132
-
-
0038383527
-
Characterization of adapt33, a stress-inducible riboregulator
-
Wang Y, Davies KJ, Melendez JA, et al. Characterization of adapt33, a stress-inducible riboregulator. Gene Expr 2003; 11:85-94.
-
(2003)
Gene Expr
, vol.11
, pp. 85-94
-
-
Wang, Y.1
Davies, K.J.2
Melendez, J.A.3
-
133
-
-
0642275613
-
aHIF but not HIF- 1alpha transcript is a poor prognostic marker in human breast cancer
-
Cayre A, Rossignol F, Clottes E, et al. aHIF but not HIF- 1alpha transcript is a poor prognostic marker in human breast cancer. Breast Cancer Res 2003;5:R223-30.
-
(2003)
Breast Cancer Res
, vol.5
-
-
Cayre, A.1
Rossignol, F.2
Clottes, E.3
-
134
-
-
20444409467
-
APeg3, a novel paternally expressed gene 3 antisense RNA transcript specifically expressed in vasopressinergic magnocellular neurons in the rat supraoptic nucleus
-
Glasgow E, Ryu SL, Yamashita M, et al. APeg3, a novel paternally expressed gene 3 antisense RNA transcript specifically expressed in vasopressinergic magnocellular neurons in the rat supraoptic nucleus. Brain Res Mol Brain Res 2005;137:143-51.
-
(2005)
Brain Res Mol Brain Res
, vol.137
, pp. 143-151
-
-
Glasgow, E.1
Ryu, S.L.2
Yamashita, M.3
-
135
-
-
46749083733
-
Expression of a noncoding RNA is elevated in Alzheimer's disease and drives rapid feed-forward regulation of beta-secretase
-
Faghihi MA, Modarresi F, Khalil AM, et al. Expression of a noncoding RNA is elevated in Alzheimer's disease and drives rapid feed-forward regulation of beta-secretase. Nat Med 2008;14:723-30.
-
(2008)
Nat Med
, vol.14
, pp. 723-730
-
-
Faghihi, M.A.1
Modarresi, F.2
Khalil, A.M.3
-
136
-
-
77951499020
-
Increased BACE1 mRNA and noncoding BACE1-antisense transcript in sporadic inclusion-body myositis muscle fibers-possibly caused by endoplasmic reticulum stress
-
Nogalska A, Engel WK, Askanas V. Increased BACE1 mRNA and noncoding BACE1-antisense transcript in sporadic inclusion-body myositis muscle fibers-possibly caused by endoplasmic reticulum stress. Neurosci Lett 2010;474:140-3.
-
(2010)
Neurosci Lett
, vol.474
, pp. 140-143
-
-
Nogalska, A.1
Engel, W.K.2
Askanas, V.3
-
137
-
-
34547785473
-
Bsr, a nuclear-retained RNA with monoallelic expression
-
Royo H, Basyuk E, Marty V, et al. Bsr, a nuclear-retained RNA with monoallelic expression. Mol Biol Cell 2007;18: 2817-27.
-
(2007)
Mol Biol Cell
, vol.18
, pp. 2817-2827
-
-
Royo, H.1
Basyuk, E.2
Marty, V.3
-
138
-
-
0035854708
-
A novel brain-specific box C/D small nucleolar RNA processed from tandemly repeated introns of a noncoding RNA gene in rats
-
Cavaille J, Vitali P, Basyuk E, et al. A novel brain-specific box C/D small nucleolar RNA processed from tandemly repeated introns of a noncoding RNA gene in rats. J Biol Chem 2001;276:26374-83.
-
(2001)
J Biol Chem
, vol.276
, pp. 26374-26383
-
-
Cavaille, J.1
Vitali, P.2
Basyuk, E.3
-
139
-
-
0033586455
-
A novel type of non-coding RNA expressed in the rat brain
-
Komine Y, Tanaka NK, Yano R, et al. A novel type of non-coding RNA expressed in the rat brain. BrainResMol Brain Res 1999;66:1-13.
-
(1999)
BrainResMol Brain Res
, vol.66
, pp. 1-13
-
-
Komine, Y.1
Tanaka, N.K.2
Yano, R.3
-
140
-
-
26844440157
-
Regulating gene expression through RNA nuclear retention
-
Prasanth KV, Prasanth SG, Xuan Z, et al. Regulating gene expression through RNA nuclear retention. Cell 2005;123: 249-63.
-
(2005)
Cell
, vol.123
, pp. 249-263
-
-
Prasanth, K.V.1
Prasanth, S.G.2
Xuan, Z.3
-
141
-
-
44449098601
-
UCA1, a non-protein-coding RNA up-regulated in bladder carcinoma and embryo, influencing cell growth and promoting invasion
-
Wang F, Li X, Xie X, et al. UCA1, a non-protein-coding RNA up-regulated in bladder carcinoma and embryo, influencing cell growth and promoting invasion. FEBS Lett 2008;582:1919-27.
-
(2008)
FEBS Lett
, vol.582
, pp. 1919-1927
-
-
Wang, F.1
Li, X.2
Xie, X.3
-
142
-
-
0029984631
-
A novel DNA damage-inducible transcript, gadd7, inhibits cell growth, but lacks a protein product
-
Hollander MC, Alamo I, Fornace AJ, Jr. A novel DNA damage-inducible transcript, gadd7, inhibits cell growth, but lacks a protein product. Nucleic Acids Res 1996;24: 1589-93.
-
(1996)
Nucleic Acids Res
, vol.24
, pp. 1589-1593
-
-
Hollander, M.C.1
Alamo, I.2
Fornace, A.J.3
-
143
-
-
0029664412
-
Oxidant-inducible adapt 15 RNA is associated with growth arrest- and DNA damage-inducible gadd153 and gadd45
-
Crawford DR, Schools GP, Davies KJ. Oxidant-inducible adapt 15 RNA is associated with growth arrest- and DNA damage-inducible gadd153 and gadd45. Arch Biochem Biophys 1996;329:137-44.
-
(1996)
Arch Biochem Biophys
, vol.329
, pp. 137-144
-
-
Crawford, D.R.1
Schools, G.P.2
Davies, K.J.3
-
144
-
-
65549103396
-
The non-coding RNA gadd7 is a regulator of lipid-induced oxidative and endoplasmic reticulum stress
-
Brookheart RT, Michel CI, Listenberger LL, et al. The non-coding RNA gadd7 is a regulator of lipid-induced oxidative and endoplasmic reticulum stress. J Biol Chem 2009;284:7446-54.
-
(2009)
J Biol Chem
, vol.284
, pp. 7446-7454
-
-
Brookheart, R.T.1
Michel, C.I.2
Listenberger, L.L.3
-
145
-
-
0026773897
-
Regulation and expression of a growth arrest-specific gene (gas5) during growth, differentiation, and development
-
Coccia EM, Cicala C, Charlesworth A, et al. Regulation and expression of a growth arrest-specific gene (gas5) during growth, differentiation, and development. Mol Cell Biol 1992;12:3514-21.
-
(1992)
Mol Cell Biol
, vol.12
, pp. 3514-3521
-
-
Coccia, E.M.1
Cicala, C.2
Charlesworth, A.3
-
146
-
-
0031756336
-
Classification of gas5 as a multismall- nucleolar-RNA (snoRNA) host gene and a member of the 5'-terminal oligopyrimidine gene family reveals common features of snoRNA host genes
-
Smith CM, Steitz JA. Classification of gas5 as a multismall- nucleolar-RNA (snoRNA) host gene and a member of the 5'-terminal oligopyrimidine gene family reveals common features of snoRNA host genes. Mol Cell Biol 1998;18:6897-909.
-
(1998)
Mol Cell Biol
, vol.18
, pp. 6897-6909
-
-
Smith, C.M.1
Steitz, J.A.2
-
147
-
-
58249098615
-
GAS5, a non-protein-coding RNA, controls apoptosis and is downregulated in breast cancer
-
Mourtada-Maarabouni M, Pickard MR, Hedge VL, et al. GAS5, a non-protein-coding RNA, controls apoptosis and is downregulated in breast cancer. Oncogene 2009;28:195- 208.
-
(2009)
Oncogene
, vol.28
-
-
Mourtada-Maarabouni, M.1
Pickard, M.R.2
Hedge, V.L.3
-
148
-
-
0036789524
-
Possible physiological role of H19 RNA
-
Ayesh S, Matouk I, Schneider T, et al. Possible physiological role of H19 RNA. Mol Carcinog 2002;35:63-74.
-
(2002)
Mol Carcinog
, vol.35
, pp. 63-74
-
-
Ayesh, S.1
Matouk, I.2
Schneider, T.3
-
149
-
-
37149033830
-
The H19 noncoding RNA is essential for human tumor growth
-
Matouk IJ, DeGroot N, Mezan S, et al. The H19 noncoding RNA is essential for human tumor growth. PLoS ONE 2007;2:e845.
-
(2007)
PLoS ONE
, vol.2
-
-
Matouk, I.J.1
DeGroot, N.2
Mezan, S.3
-
150
-
-
70350138340
-
H19 acts as a trans regulator of the imprinted gene network controlling growth in mice
-
Gabory A, Ripoche MA, Le Digarcher A, et al. H19 acts as a trans regulator of the imprinted gene network controlling growth in mice. Development 2009;136:3413-21.
-
(2009)
Development
, vol.136
, pp. 3413-3421
-
-
Gabory, A.1
Ripoche, M.A.2
Le Digarcher, A.3
-
151
-
-
84865379361
-
LincRNAp21 suppresses target mRNA translation
-
Yoon JH, Abdelmohsen K, Srikantan S, et al. LincRNAp21 suppresses target mRNA translation. MolCell 2012;47: 648-55.
-
(2012)
MolCell
, vol.47
, pp. 648-655
-
-
Yoon, J.H.1
Abdelmohsen, K.2
Srikantan, S.3
-
152
-
-
84875810883
-
Repression of the long noncoding RNA-LET by histone deacetylase 3 contributes to hypoxia-mediated metastasis
-
Yang F, Huo XS, Yuan SX, et al. Repression of the long noncoding RNA-LET by histone deacetylase 3 contributes to hypoxia-mediated metastasis. MolCell 2013;49:1083-96.
-
(2013)
MolCell
, vol.49
, pp. 1083-1096
-
-
Yang, F.1
Huo, X.S.2
Yuan, S.X.3
-
153
-
-
67650656647
-
Identification and characterisation of a novel antisense non-coding RNA from the RBM5 gene locus
-
Rintala-Maki ND, Sutherland LC. Identification and characterisation of a novel antisense non-coding RNA from the RBM5 gene locus. Gene 2009;445:7-16.
-
(2009)
Gene
, vol.445
, pp. 7-16
-
-
Rintala-Maki, N.D.1
Sutherland, L.C.2
-
154
-
-
40449114449
-
A novel noncoding RNA rescues mutant SOD1-mediated cell death
-
Chang Y, Stockinger MP, Tashiro H, et al. A novel noncoding RNA rescues mutant SOD1-mediated cell death. FASEB J 2008;22:691-702.
-
(2008)
FASEB J
, vol.22
, pp. 691-702
-
-
Chang, Y.1
Stockinger, M.P.2
Tashiro, H.3
-
155
-
-
33745595582
-
Identification and characterization of a virus-inducible non-coding RNA in mouse brain
-
Saha S, Murthy S, Rangarajan PN. Identification and characterization of a virus-inducible non-coding RNA in mouse brain. J GenVirol 2006;87:1991-5.
-
(2006)
J GenVirol
, vol.87
, pp. 1991-1995
-
-
Saha, S.1
Murthy, S.2
Rangarajan, P.N.3
-
156
-
-
84874614275
-
NEAT1 long noncoding RNA and paraspeckle bodies modulate HIV-1 posttranscriptional expression
-
Zhang Q, Chen CY, Yedavalli VS, et al. NEAT1 long noncoding RNA and paraspeckle bodies modulate HIV-1 posttranscriptional expression. MBio 2013;4: e00596-12.
-
(2013)
MBio
, vol.4
-
-
Zhang, Q.1
Chen, C.Y.2
Yedavalli, V.S.3
-
157
-
-
78651305638
-
Mining affymetrix microarray data for long non-coding RNAs: altered expression in the nucleus accumbens of heroin abusers
-
Michelhaugh SK, Lipovich L, Blythe J, et al. Mining affymetrix microarray data for long non-coding RNAs: altered expression in the nucleus accumbens of heroin abusers. JNeurochem 2011;116:459-66.
-
(2011)
JNeurochem
, vol.116
, pp. 459-466
-
-
Michelhaugh, S.K.1
Lipovich, L.2
Blythe, J.3
-
158
-
-
0038371368
-
Tmevpg1, a candidate gene for the control of Theiler's virus persistence, could be implicated in the regulation of gamma interferon
-
Vigneau S, Rohrlich PS, Brahic M, et al. Tmevpg1, a candidate gene for the control of Theiler's virus persistence, could be implicated in the regulation of gamma interferon. JVirol 2003;77:5632-8.
-
(2003)
JVirol
, vol.77
, pp. 5632-5638
-
-
Vigneau, S.1
Rohrlich, P.S.2
Brahic, M.3
-
159
-
-
51049124035
-
p53 mRNA controls p53 activity by managing Mdm2 functions
-
Candeias MM, Malbert-Colas L, Powell DJ, et al. p53 mRNA controls p53 activity by managing Mdm2 functions. Nat Cell Biol 2008;10:1098-105.
-
(2008)
Nat Cell Biol
, vol.10
, pp. 1098-1105
-
-
Candeias, M.M.1
Malbert-Colas, L.2
Powell, D.J.3
-
160
-
-
84855982133
-
The p53 mRNA-Mdm2 interaction controls Mdm2 nuclear trafficking and is required for p53 activation following DNA damage
-
Gajjar M, Candeias MM, Malbert-Colas L, et al. The p53 mRNA-Mdm2 interaction controls Mdm2 nuclear trafficking and is required for p53 activation following DNA damage. Cancer Cell 2012;21:25-35.
-
(2012)
Cancer Cell
, vol.21
, pp. 25-35
-
-
Gajjar, M.1
Candeias, M.M.2
Malbert-Colas, L.3
-
161
-
-
21244447111
-
Identification and characterization of a novel, psoriasis susceptibilityrelated noncoding RNA gene, PRINS
-
Sonkoly E, Bata-Csorgo Z, Pivarcsi A, et al. Identification and characterization of a novel, psoriasis susceptibilityrelated noncoding RNA gene, PRINS. J BiolChem 2005; 280:24159-67.
-
(2005)
J BiolChem
, vol.280
, pp. 24159-24167
-
-
Sonkoly, E.1
Bata-Csorgo, Z.2
Pivarcsi, A.3
-
162
-
-
82355173388
-
Comparison of stressinduced PRINS gene expression in normal human keratinocytes and HaCaT cells
-
Bari L, Bacsa S, Sonkoly E, et al. Comparison of stressinduced PRINS gene expression in normal human keratinocytes and HaCaT cells. Arch Dermatol Res 2011;303: 745-52.
-
(2011)
Arch Dermatol Res
, vol.303
, pp. 745-752
-
-
Bari, L.1
Bacsa, S.2
Sonkoly, E.3
-
163
-
-
77349090936
-
The anti-apoptotic protein G1P3 is overexpressed in psoriasis and regulated by the non-coding RNA, PRINS
-
Szegedi K, Sonkoly E, Nagy N, et al. The anti-apoptotic protein G1P3 is overexpressed in psoriasis and regulated by the non-coding RNA, PRINS. Exp Dermatol 2010;19: 269-78.
-
(2010)
Exp Dermatol
, vol.19
, pp. 269-278
-
-
Szegedi, K.1
Sonkoly, E.2
Nagy, N.3
-
164
-
-
84869088820
-
Long non-coding antisense RNA controls Uchl1 translation through an embedded SINEB2 repeat
-
Carrieri C, Cimatti L, Biagioli M, et al. Long non-coding antisense RNA controls Uchl1 translation through an embedded SINEB2 repeat. Nature 2012;491:454-7.
-
(2012)
Nature
, vol.491
, pp. 454-457
-
-
Carrieri, C.1
Cimatti, L.2
Biagioli, M.3
-
165
-
-
0033668957
-
Identification of urocortin mRNA antisense transcripts in rat tissue
-
Shi M, Yan X, Ryan DH, et al. Identification of urocortin mRNA antisense transcripts in rat tissue. Brain Res Bull 2000;53:317-24.
-
(2000)
Brain Res Bull
, vol.53
, pp. 317-324
-
-
Shi, M.1
Yan, X.2
Ryan, D.H.3
-
166
-
-
80053019485
-
Regulation by small RNAs in bacteria: expanding frontiers
-
Storz G, Vogel J, Wassarman KM. Regulation by small RNAs in bacteria: expanding frontiers. Mol Cell 2011;43: 880-91.
-
(2011)
Mol Cell
, vol.43
, pp. 880-891
-
-
Storz, G.1
Vogel, J.2
Wassarman, K.M.3
-
167
-
-
79961239912
-
Small RNAs endow a transcriptional activator with essential repressor functions for single-tier control of a global stress regulon
-
Gogol EB, Rhodius VA, Papenfort K, et al. Small RNAs endow a transcriptional activator with essential repressor functions for single-tier control of a global stress regulon. Proc Natl Acad Sci USA 2011;108:12875-80.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 12875-12880
-
-
Gogol, E.B.1
Rhodius, V.A.2
Papenfort, K.3
-
168
-
-
78049393967
-
Experimental discovery of small RNAs in Staphylococcus aureus reveals a riboregulator of central metabolism
-
Bohn C, Rigoulay C, Chabelskaya S, et al. Experimental discovery of small RNAs in Staphylococcus aureus reveals a riboregulator of central metabolism. NucleicAcidsRes 2010; 38:6620-36.
-
(2010)
NucleicAcidsRes
, vol.38
, pp. 6620-6636
-
-
Bohn, C.1
Rigoulay, C.2
Chabelskaya, S.3
-
170
-
-
0041825422
-
Toxin-antitoxin loci as stress-response-elements: ChpAK/MazF and ChpBK cleave translated RNAs and are counteracted by tmRNA
-
Christensen SK, Pedersen K, Hansen FG, et al. Toxin-antitoxin loci as stress-response-elements: ChpAK/MazF and ChpBK cleave translated RNAs and are counteracted by tmRNA. JMol Biol 2003;332:809-19.
-
(2003)
JMol Biol
, vol.332
, pp. 809-819
-
-
Christensen, S.K.1
Pedersen, K.2
Hansen, F.G.3
-
171
-
-
0029739317
-
The small RNA, DsrA, is essential for the low temperature expression of RpoS during exponential growth in Escherichia coli
-
Sledjeski DD, Gupta A, Gottesman S. The small RNA, DsrA, is essential for the low temperature expression of RpoS during exponential growth in Escherichia coli. EMBOJ 1996;15:3993-4000.
-
(1996)
EMBOJ
, vol.15
, pp. 3993-4000
-
-
Sledjeski, D.D.1
Gupta, A.2
Gottesman, S.3
-
172
-
-
0031459386
-
A small, stable RNA induced by oxidative stress: role as a pleiotropic regulator and antimutator
-
Altuvia S, Weinstein-Fischer D, Zhang A, et al. A small, stable RNA induced by oxidative stress: role as a pleiotropic regulator and antimutator. Cell 1997;90:43-53.
-
(1997)
Cell
, vol.90
, pp. 43-53
-
-
Altuvia, S.1
Weinstein-Fischer, D.2
Zhang, A.3
-
173
-
-
1542694432
-
Inhibition of heat shock protein synthesis by heat-inducible antisense RNA
-
McGarry TJ, Lindquist S. Inhibition of heat shock protein synthesis by heat-inducible antisense RNA. Proc Natl Acad SciUSA 1986;83:399-403.
-
(1986)
Proc Natl Acad SciUSA
, vol.83
, pp. 399-403
-
-
McGarry, T.J.1
Lindquist, S.2
-
174
-
-
72249083324
-
Promoter strength properties of the complete sigma E regulon of Escherichia coli and Salmonella enterica
-
Mutalik VK, Nonaka G, Ades SE, et al. Promoter strength properties of the complete sigma E regulon of Escherichia coli and Salmonella enterica. J Bacteriol 2009;191:7279-87.
-
(2009)
J Bacteriol
, vol.191
, pp. 7279-7287
-
-
Mutalik, V.K.1
Nonaka, G.2
Ades, S.E.3
-
175
-
-
70350771280
-
A trans-acting riboswitch controls expression of the virulence regulator PrfA in Listeria monocytogenes
-
Loh E, Dussurget O, Gripenland J, et al. A trans-acting riboswitch controls expression of the virulence regulator PrfA in Listeria monocytogenes. Cell 2009;139:770-9.
-
(2009)
Cell
, vol.139
, pp. 770-779
-
-
Loh, E.1
Dussurget, O.2
Gripenland, J.3
-
176
-
-
34548758619
-
A cyanobacterial non-coding RNA, Yfr1, is required for growth under multiple stress conditions
-
Nakamura T, Naito K, Yokota N, et al. A cyanobacterial non-coding RNA, Yfr1, is required for growth under multiple stress conditions. Plant Cell Physiol 2007;48:1309-18.
-
(2007)
Plant Cell Physiol
, vol.48
, pp. 1309-1318
-
-
Nakamura, T.1
Naito, K.2
Yokota, N.3
-
177
-
-
79960065233
-
XUTs are a class of Xrn1-sensitive antisense regulatory noncoding RNA in yeast
-
van Dijk EL, Chen CL, d'Aubenton-Carafa Y, et al. XUTs are a class of Xrn1-sensitive antisense regulatory noncoding RNA in yeast. Nature 2011;475:114-7.
-
(2011)
Nature
, vol.475
, pp. 114-117
-
-
van Dijk, E.L.1
Chen, C.L.2
d'Aubenton-Carafa, Y.3
-
178
-
-
81255210932
-
Abundant class of non-coding RNA regulates development in the social amoeba Dictyostelium discoideum
-
Avesson L, Schumacher HT, Fechter P, et al. Abundant class of non-coding RNA regulates development in the social amoeba Dictyostelium discoideum. RNA Biol 2011; 8:1094-104.
-
(2011)
RNA Biol
, vol.8
, pp. 1094-1104
-
-
Avesson, L.1
Schumacher, H.T.2
Fechter, P.3
-
179
-
-
84866388360
-
Transcription of two long noncoding RNAs mediates mating-type control of gametogenesis in budding yeast
-
van Werven FJ, Neuert G, Hendrick N, etal. Transcription of two long noncoding RNAs mediates mating-type control of gametogenesis in budding yeast. Cell 2012;150: 1170-81.
-
(2012)
Cell
, vol.150
, pp. 1170-1181
-
-
van Werven, F.J.1
Neuert, G.2
Hendrick, N.3
-
180
-
-
84866392310
-
Set3 HDAC mediates effects of overlapping noncoding transcription on gene induction kinetics
-
Kim T, Xu Z, Clauder-Munster S, et al. Set3 HDAC mediates effects of overlapping noncoding transcription on gene induction kinetics. Cell 2012;150:1158-69.
-
(2012)
Cell
, vol.150
, pp. 1158-1169
-
-
Kim, T.1
Xu, Z.2
Clauder-Munster, S.3
-
182
-
-
33745442032
-
Characterization of 43 non-protein-coding mRNA genes in Arabidopsis, including the MIR162a-derived transcripts
-
Hirsch J, Lefort V, Vankersschaver M, et al. Characterization of 43 non-protein-coding mRNA genes in Arabidopsis, including the MIR162a-derived transcripts. Plant Physiol 2006;140:1192-204.
-
(2006)
Plant Physiol
, vol.140
, pp. 1192-1204
-
-
Hirsch, J.1
Lefort, V.2
Vankersschaver, M.3
-
183
-
-
29244490062
-
Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis
-
Borsani O, Zhu J, Verslues PE, et al. Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis. Cell 2005;123:1279-91.
-
(2005)
Cell
, vol.123
, pp. 1279-1291
-
-
Borsani, O.1
Zhu, J.2
Verslues, P.E.3
-
184
-
-
4043074968
-
Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis
-
Sunkar R, Zhu JK. Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis. Plant Cell 2004; 16:2001-19.
-
(2004)
Plant Cell
, vol.16
, pp. 2001-2019
-
-
Sunkar, R.1
Zhu, J.K.2
-
185
-
-
84871910383
-
Genome-wide analysis uncovers regulation of long intergenic noncoding RNAs in Arabidopsis
-
Liu J, Jung C, Xu J, et al. Genome-wide analysis uncovers regulation of long intergenic noncoding RNAs in Arabidopsis. Plant Cell 2012;24:4333-45.
-
(2012)
Plant Cell
, vol.24
, pp. 4333-4345
-
-
Liu, J.1
Jung, C.2
Xu, J.3
-
186
-
-
79957799373
-
A novel class of heatresponsive small RNAs derived from the chloroplast genome of Chinese cabbage (Brassica rapa)
-
Wang L, Yu X, Wang H, et al. A novel class of heatresponsive small RNAs derived from the chloroplast genome of Chinese cabbage (Brassica rapa). BMC Genomics 2011;12:289.
-
(2011)
BMC Genomics
, vol.12
, pp. 289
-
-
Wang, L.1
Yu, X.2
Wang, H.3
-
187
-
-
34547497309
-
Target mimicry provides a new mechanism for regulation of microRNA activity
-
Franco-Zorrilla JM, Valli A, Todesco M, etal. Target mimicry provides a new mechanism for regulation of microRNA activity. Nat Genet 2007;39:1033-7.
-
(2007)
Nat Genet
, vol.39
, pp. 1033-1037
-
-
Franco-Zorrilla, J.M.1
Valli, A.2
Todesco, M.3
-
188
-
-
84863115947
-
A long noncoding RNA regulates photoperiod-sensitive male sterility, an essential component of hybrid rice
-
Ding J, Lu Q, Ouyang Y, et al. A long noncoding RNA regulates photoperiod-sensitive male sterility, an essential component of hybrid rice. Proc Natl Acad Sci USA 2012; 109:2654-9.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 2654-2659
-
-
Ding, J.1
Lu, Q.2
Ouyang, Y.3
-
189
-
-
78650966670
-
Vernalization-mediated epigenetic silencing by a long intronic noncoding RNA
-
Heo JB, Sung S. Vernalization-mediated epigenetic silencing by a long intronic noncoding RNA. Science 2011;331: 76-9.
-
(2011)
Science
, vol.331
, pp. 76-79
-
-
Heo, J.B.1
Sung, S.2
-
190
-
-
72049133207
-
Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target
-
Swiezewski S, Liu F, Magusin A, et al. Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target. Nature 2009;462:799-802.
-
(2009)
Nature
, vol.462
, pp. 799-802
-
-
Swiezewski, S.1
Liu, F.2
Magusin, A.3
-
191
-
-
79955705363
-
MicroRNA networks and developmental plasticity in plants
-
Rubio-Somoza I, Weigel D. MicroRNA networks and developmental plasticity in plants. Trends Plant Sci 2011;16: 258-64.
-
(2011)
Trends Plant Sci
, vol.16
, pp. 258-264
-
-
Rubio-Somoza, I.1
Weigel, D.2
-
192
-
-
84859255885
-
Phenotypic plasticity of the Drosophila transcriptome
-
Zhou S, Campbell TG, Stone EA, et al. Phenotypic plasticity of the Drosophila transcriptome. PLoS Genet 2012;8: e1002593.
-
(2012)
PLoS Genet
, vol.8
-
-
Zhou, S.1
Campbell, T.G.2
Stone, E.A.3
-
193
-
-
84867608145
-
Long non-coding RNAs coordinate cellular responses to stress
-
Lakhotia SC. Long non-coding RNAs coordinate cellular responses to stress. Wiley InterdiscipRevRNA 2012;3:779-96.
-
(2012)
Wiley InterdiscipRevRNA
, vol.3
, pp. 779-796
-
-
Lakhotia, S.C.1
-
194
-
-
33646777453
-
Altered expressions of the noncoding hsromega gene enhances poly-Q-induced neurotoxicity in Drosophila
-
Sengupta S, Lakhotia SC. Altered expressions of the noncoding hsromega gene enhances poly-Q-induced neurotoxicity in Drosophila. RNA Biol 2006;3:28-35.
-
(2006)
RNA Biol
, vol.3
, pp. 28-35
-
-
Sengupta, S.1
Lakhotia, S.C.2
-
195
-
-
0033763021
-
Omega speckles - a novel class of nuclear speckles containing hnRNPs associated with noncoding hsr-omega RNA in Drosophila
-
Prasanth KV, Rajendra TK, Lal AK, etal. Omega speckles - a novel class of nuclear speckles containing hnRNPs associated with noncoding hsr-omega RNA in Drosophila. JCell Sci 2000;113 (Pt 19):3485-97.
-
(2000)
JCell Sci
, vol.113
, Issue.PART 19
, pp. 3485-3497
-
-
Prasanth, K.V.1
Rajendra, T.K.2
Lal, A.K.3
-
196
-
-
0025967659
-
Expression of heat-shock locus hsr-omega in nonstressed cells during development in Drosophila melanogaster
-
Bendena WG, Ayme-Southgate A, Garbe JC, et al. Expression of heat-shock locus hsr-omega in nonstressed cells during development in Drosophila melanogaster. Dev Biol 1991;144:65-77.
-
(1991)
Dev Biol
, vol.144
, pp. 65-77
-
-
Bendena, W.G.1
Ayme-Southgate, A.2
Garbe, J.C.3
-
197
-
-
34248176724
-
Heat shock genes - integrating cell survival and death
-
Arya R, Mallik M, Lakhotia SC. Heat shock genes - integrating cell survival and death. J Biosci 2007;32:595-610.
-
(2007)
J Biosci
, vol.32
, pp. 595-610
-
-
Arya, R.1
Mallik, M.2
Lakhotia, S.C.3
-
198
-
-
0035413670
-
Male sterility associated with overexpression of the noncoding hsromega gene in cyst cells of testis of Drosophila melanogaster
-
Rajendra TK, Prasanth KV, Lakhotia SC. Male sterility associated with overexpression of the noncoding hsromega gene in cyst cells of testis of Drosophila melanogaster. J Genet 2001;80:97-110.
-
(2001)
J Genet
, vol.80
, pp. 97-110
-
-
Rajendra, T.K.1
Prasanth, K.V.2
Lakhotia, S.C.3
-
199
-
-
0030817370
-
Specific induction of the hsr omega locus of Drosophila melanogaster by amides
-
Tapadia MG, Lakhotia SC. Specific induction of the hsr omega locus of Drosophila melanogaster by amides. Chromosome Res 1997;5:359-62.
-
(1997)
Chromosome Res
, vol.5
, pp. 359-362
-
-
Tapadia, M.G.1
Lakhotia, S.C.2
-
200
-
-
0027503932
-
HSP90 associates with specific heat shock puffs (hsr omega) in polytene chromosomes of Drosophila and Chironomus
-
Morcillo G, Diez JL, Carbajal ME, et al. HSP90 associates with specific heat shock puffs (hsr omega) in polytene chromosomes of Drosophila and Chironomus. Chromosoma 1993;102:648-59.
-
(1993)
Chromosoma
, vol.102
, pp. 648-659
-
-
Morcillo, G.1
Diez, J.L.2
Carbajal, M.E.3
-
201
-
-
4344579113
-
The SINEencoded mouse B2 RNA represses mRNA transcription in response to heat shock
-
Allen TA, Von Kaenel S, Goodrich JA, et al. The SINEencoded mouse B2 RNA represses mRNA transcription in response to heat shock. Nat StructMol Biol 2004;11:816-21.
-
(2004)
Nat StructMol Biol
, vol.11
, pp. 816-821
-
-
Allen, T.A.1
Von Kaenel, S.2
Goodrich, J.A.3
-
202
-
-
65249158053
-
B2 RNA and Alu RNA repress transcription by disrupting contacts between RNA polymerase II and promoter DNA within assembled complexes
-
Yakovchuk P, Goodrich JA, Kugel JF. B2 RNA and Alu RNA repress transcription by disrupting contacts between RNA polymerase II and promoter DNA within assembled complexes. ProcNatl Acad SciUSA 2009;106:5569-74.
-
(2009)
ProcNatl Acad SciUSA
, vol.106
, pp. 5569-5574
-
-
Yakovchuk, P.1
Goodrich, J.A.2
Kugel, J.F.3
-
203
-
-
0347432388
-
Stress-induced transcription of satellite III repeats
-
Jolly C, Metz A, Govin J, et al. Stress-induced transcription of satellite III repeats. JCell Biol 2004;164:25-33.
-
(2004)
JCell Biol
, vol.164
, pp. 25-33
-
-
Jolly, C.1
Metz, A.2
Govin, J.3
-
204
-
-
0742270643
-
Transcriptional activation of a constitutive heterochromatic domain of the human genome in response to heat shock
-
Rizzi N, Denegri M, Chiodi I, et al. Transcriptional activation of a constitutive heterochromatic domain of the human genome in response to heat shock. Mol Biol Cell 2004;15:543-51.
-
(2004)
Mol Biol Cell
, vol.15
, pp. 543-551
-
-
Rizzi, N.1
Denegri, M.2
Chiodi, I.3
-
205
-
-
19644391725
-
Structural and functional characterization of noncoding repetitive RNAs transcribed in stressed human cells
-
Valgardsdottir R, Chiodi I, Giordano M, et al. Structural and functional characterization of noncoding repetitive RNAs transcribed in stressed human cells. Mol Biol Cell 2005;16:2597-604.
-
(2005)
Mol Biol Cell
, vol.16
, pp. 2597-2604
-
-
Valgardsdottir, R.1
Chiodi, I.2
Giordano, M.3
-
206
-
-
33751018566
-
Human sat III and Drosophila hsr omega transcripts: a common paradigm for regulation of nuclear RNA processing in stressed cells
-
Jolly C, Lakhotia SC. Human sat III and Drosophila hsr omega transcripts: a common paradigm for regulation of nuclear RNA processing in stressed cells. Nucleic Acids Res 2006;34:5508-14.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 5508-5514
-
-
Jolly, C.1
Lakhotia, S.C.2
-
207
-
-
2942529192
-
Nuclear stress bodies: a heterochromatin affair?
-
Biamonti G. Nuclear stress bodies: a heterochromatin affair? Nat RevMol Cell Biol 2004;5:493-8.
-
(2004)
Nat RevMol Cell Biol
, vol.5
, pp. 493-498
-
-
Biamonti, G.1
-
208
-
-
39149127591
-
Transcription of Satellite III non-coding RNAs is a general stress response in human cells
-
Valgardsdottir R, Chiodi I, Giordano M, etal. Transcription of Satellite III non-coding RNAs is a general stress response in human cells. NucleicAcidsRes 2008;36:423-34.
-
(2008)
NucleicAcidsRes
, vol.36
, pp. 423-434
-
-
Valgardsdottir, R.1
Chiodi, I.2
Giordano, M.3
-
209
-
-
5444253157
-
A key role for stressinduced satellite III transcripts in the relocalization of splicing factors into nuclear stress granules
-
Metz A, Soret J, Vourc'h C, et al. A key role for stressinduced satellite III transcripts in the relocalization of splicing factors into nuclear stress granules. JCellSci 2004;117:4551-8.
-
(2004)
JCellSci
, vol.117
, pp. 4551-4558
-
-
Metz, A.1
Soret, J.2
Vourc'h, C.3
-
210
-
-
79551593011
-
Nucleation of nuclear bodies by RNA
-
Shevtsov SP, Dundr M. Nucleation of nuclear bodies by RNA. Nat Cell Biol 2011;13:167-73.
-
(2011)
Nat Cell Biol
, vol.13
, pp. 167-173
-
-
Shevtsov, S.P.1
Dundr, M.2
-
211
-
-
75149129127
-
Evidence for bacterial origin of heat shock RNA-1
-
Kim DS, Lee Y, Hahn Y. Evidence for bacterial origin of heat shock RNA-1. RNA 2010;16:274-9.
-
(2010)
RNA
, vol.16
, pp. 274-279
-
-
Kim, D.S.1
Lee, Y.2
Hahn, Y.3
-
212
-
-
33750689875
-
Gene control by large noncoding RNAs
-
Shamovsky I, Nudler E. Gene control by large noncoding RNAs. Sci STKE 2006;2006:pe40.
-
(2006)
Sci STKE
, vol.2006
-
-
Shamovsky, I.1
Nudler, E.2
-
213
-
-
66149084316
-
qiRNA is a new type of small interfering RNA induced by DNA damage
-
Lee HC, Chang SS, Choudhary S, et al. qiRNA is a new type of small interfering RNA induced by DNA damage. Nature 2009;459:274-7.
-
(2009)
Nature
, vol.459
, pp. 274-277
-
-
Lee, H.C.1
Chang, S.S.2
Choudhary, S.3
-
214
-
-
79958207254
-
MicroRNAs: new players in the DNA damage response
-
Hu H, Gatti RA. MicroRNAs: new players in the DNA damage response. JMol Cell Biol 2011;3:151-8.
-
(2011)
JMol Cell Biol
, vol.3
, pp. 151-158
-
-
Hu, H.1
Gatti, R.A.2
-
215
-
-
84872870536
-
tRNA-derived microRNA modulates proliferation and the DNA damage response and is down-regulated in B cell lymphoma
-
Maute RL, Schneider C, Sumazin P, et al. tRNA-derived microRNA modulates proliferation and the DNA damage response and is down-regulated in B cell lymphoma. Proc Natl Acad SciUSA 2013;110:1404-9.
-
(2013)
Proc Natl Acad SciUSA
, vol.110
, pp. 1404-1409
-
-
Maute, R.L.1
Schneider, C.2
Sumazin, P.3
-
216
-
-
70449724791
-
MicroRNA responses and stress granule formation modulate the DNA damage response
-
Pothof J, Verkaik NS, Hoeijmakers JH, et al. MicroRNA responses and stress granule formation modulate the DNA damage response. Cell Cycle 2009;8:3462-8.
-
(2009)
Cell Cycle
, vol.8
, pp. 3462-3468
-
-
Pothof, J.1
Verkaik, N.S.2
Hoeijmakers, J.H.3
-
217
-
-
84864647205
-
Site-specific DICER and DROSHA RNA products control the DNA-damage response
-
Francia S, Michelini F, Saxena A, etal. Site-specific DICER and DROSHA RNA products control the DNA-damage response. Nature 2012;488:231-5.
-
(2012)
Nature
, vol.488
, pp. 231-235
-
-
Francia, S.1
Michelini, F.2
Saxena, A.3
-
218
-
-
84857923425
-
Mutually exclusive binding of telomerase RNA and DNA by Ku alters telomerase recruitment model
-
Pfingsten JS, Goodrich KJ, Taabazuing C, et al. Mutually exclusive binding of telomerase RNA and DNA by Ku alters telomerase recruitment model. Cell 2012;148: 922-32.
-
(2012)
Cell
, vol.148
, pp. 922-932
-
-
Pfingsten, J.S.1
Goodrich, K.J.2
Taabazuing, C.3
-
219
-
-
84857921549
-
7SK snRNA: a noncoding RNA that plays a major role in regulating eukaryotic transcription
-
Peterlin BM, Brogie JE, Price DH. 7SK snRNA: a noncoding RNA that plays a major role in regulating eukaryotic transcription. Wiley InterdiscipRevRNA 2012;3:92-103.
-
(2012)
Wiley InterdiscipRevRNA
, vol.3
, pp. 92-103
-
-
Peterlin, B.M.1
Brogie, J.E.2
Price, D.H.3
-
220
-
-
0035891271
-
The 7SK small nuclear RNA inhibits the CDK9/cyclin T1 kinase to control transcription
-
Yang Z, Zhu Q, Luo K, etal. The 7SK small nuclear RNA inhibits the CDK9/cyclin T1 kinase to control transcription. Nature 2001;414:317-22.
-
(2001)
Nature
, vol.414
, pp. 317-322
-
-
Yang, Z.1
Zhu, Q.2
Luo, K.3
-
221
-
-
0036851825
-
Activation and function of cyclin T-Cdk9 (positive transcription elongation factorb) in cardiac muscle-cell hypertrophy
-
Sano M, Abdellatif M, Oh H, etal. Activation and function of cyclin T-Cdk9 (positive transcription elongation factorb) in cardiac muscle-cell hypertrophy. Nat Med 2002;8: 1310-17.
-
(2002)
Nat Med
, vol.8
, pp. 1310-1317
-
-
Sano, M.1
Abdellatif, M.2
Oh, H.3
-
222
-
-
0035891288
-
7SK small nuclear RNA binds to and inhibits the activity of CDK9/cyclin T complexes
-
Nguyen VT, Kiss T, Michels AA, et al. 7SK small nuclear RNA binds to and inhibits the activity of CDK9/cyclin T complexes. Nature 2001;414:322-5.
-
(2001)
Nature
, vol.414
, pp. 322-325
-
-
Nguyen, V.T.1
Kiss, T.2
Michels, A.A.3
-
223
-
-
79957491918
-
New insights into the control of HIV-1 transcription: when Tat meets the 7SK snRNP and super elongation complex (SEC)
-
He N, Zhou Q. New insights into the control of HIV-1 transcription: when Tat meets the 7SK snRNP and super elongation complex (SEC). JNeuroimmune Pharmacol 2011; 6:260-8.
-
(2011)
JNeuroimmune Pharmacol
, vol.6
, pp. 260-268
-
-
He, N.1
Zhou, Q.2
-
224
-
-
78049261451
-
Wisely chosen paths-regulation of rRNA synthesis: delivered on 30 June 2010 at the 35th FEBS Congress in Gothenburg, Sweden
-
Grummt I. Wisely chosen paths-regulation of rRNA synthesis: delivered on 30 June 2010 at the 35th FEBS Congress in Gothenburg, Sweden. The FEBS J 2010;277: 4626-39.
-
(2010)
The FEBS J
, vol.277
, pp. 4626-4639
-
-
Grummt, I.1
-
225
-
-
33646147563
-
Intergenic transcripts regulate the epigenetic state of rRNA genes
-
Mayer C, Schmitz KM, Li J, et al. Intergenic transcripts regulate the epigenetic state of rRNA genes. Mol Cell 2006;22:351-61.
-
(2006)
Mol Cell
, vol.22
, pp. 351-361
-
-
Mayer, C.1
Schmitz, K.M.2
Li, J.3
-
226
-
-
84859051225
-
Inheritance of silent rDNA chromatin is mediated by PARP1 via noncoding RNA
-
Guetg C, Scheifele F, Rosenthal F, et al. Inheritance of silent rDNA chromatin is mediated by PARP1 via noncoding RNA. Mol Cell 2012;45:790-800.
-
(2012)
Mol Cell
, vol.45
, pp. 790-800
-
-
Guetg, C.1
Scheifele, F.2
Rosenthal, F.3
-
227
-
-
0344011603
-
Disruption of the nucleolus mediates stabilization of p53 in response to DNA damage and other stresses
-
Rubbi CP, Milner J. Disruption of the nucleolus mediates stabilization of p53 in response to DNA damage and other stresses. EMBOJ 2003;22:6068-77.
-
(2003)
EMBOJ
, vol.22
, pp. 6068-6077
-
-
Rubbi, C.P.1
Milner, J.2
-
228
-
-
17444430871
-
The nucleolus as a stress sensor: JNK2 inactivates the transcription factor TIF-IA and down-regulates rRNA synthesis
-
Mayer C, Bierhoff H, Grummt I. The nucleolus as a stress sensor: JNK2 inactivates the transcription factor TIF-IA and down-regulates rRNA synthesis. Genes Dev 2005;19: 933-41.
-
(2005)
Genes Dev
, vol.19
, pp. 933-941
-
-
Mayer, C.1
Bierhoff, H.2
Grummt, I.3
-
229
-
-
77956898581
-
HSP90 and its R2TP/Prefoldin-like cochaperone are involved in the cytoplasmic assembly of RNA polymerase II
-
Boulon S, Pradet-Balade B, Verheggen C, etal. HSP90 and its R2TP/Prefoldin-like cochaperone are involved in the cytoplasmic assembly of RNA polymerase II. Mol Cell 2010;39:912-24.
-
(2010)
Mol Cell
, vol.39
, pp. 912-924
-
-
Boulon, S.1
Pradet-Balade, B.2
Verheggen, C.3
-
230
-
-
84873423156
-
Environmental perturbations lift the degeneracy of the genetic code to regulate protein levels in bacteria
-
Subramaniam AR, Pan T, Cluzel P. Environmental perturbations lift the degeneracy of the genetic code to regulate protein levels in bacteria. ProcNatlAcad SciUSA 2013; 110:2419-24.
-
(2013)
ProcNatlAcad SciUSA
, vol.110
, pp. 2419-2424
-
-
Subramaniam, A.R.1
Pan, T.2
Cluzel, P.3
-
231
-
-
58849150431
-
The phage abortive infection system, ToxIN, functions as a protein-RNA toxin-antitoxin pair
-
Fineran PC, Blower TR, Foulds IJ, et al. The phage abortive infection system, ToxIN, functions as a protein-RNA toxin-antitoxin pair. Proc Natl Acad Sci USA 2009;106: 894-9.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 894-899
-
-
Fineran, P.C.1
Blower, T.R.2
Foulds, I.J.3
-
232
-
-
80755187812
-
CRISPR-Cas systems in bacteria and archaea: versatile small RNAs for adaptive defense and regulation
-
Bhaya D, Davison M, Barrangou R. CRISPR-Cas systems in bacteria and archaea: versatile small RNAs for adaptive defense and regulation. Annu Rev Genet 2011;45: 273-97.
-
(2011)
Annu Rev Genet
, vol.45
, pp. 273-297
-
-
Bhaya, D.1
Davison, M.2
Barrangou, R.3
-
233
-
-
34248374277
-
A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action
-
Makarova KS, Grishin NV, Shabalina SA, et al. A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action. BiolDirect 2006;1:7.
-
(2006)
BiolDirect
, vol.1
, pp. 7
-
-
Makarova, K.S.1
Grishin, N.V.2
Shabalina, S.A.3
-
234
-
-
34047118522
-
CRISPR provides acquired resistance against viruses in prokaryotes
-
Barrangou R, Fremaux C, Deveau H, et al. CRISPR provides acquired resistance against viruses in prokaryotes. Science 2007;315:1709-12.
-
(2007)
Science
, vol.315
, pp. 1709-1712
-
-
Barrangou, R.1
Fremaux, C.2
Deveau, H.3
-
235
-
-
70449753811
-
RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex
-
Hale CR, Zhao P, Olson S, et al. RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex. Cell 2009;139:945-56.
-
(2009)
Cell
, vol.139
, pp. 945-956
-
-
Hale, C.R.1
Zhao, P.2
Olson, S.3
-
236
-
-
84857097177
-
RNA-guided genetic silencing systems in bacteria and archaea
-
Wiedenheft B, Sternberg SH, Doudna JA. RNA-guided genetic silencing systems in bacteria and archaea. Nature 2012;482:331-8.
-
(2012)
Nature
, vol.482
, pp. 331-338
-
-
Wiedenheft, B.1
Sternberg, S.H.2
Doudna, J.A.3
-
237
-
-
36749037521
-
The Piwi-piRNA pathway provides an adaptive defense in the transposon arms race
-
Aravin AA, Hannon GJ, Brennecke J. The Piwi-piRNA pathway provides an adaptive defense in the transposon arms race. Science 2007;318:761-4.
-
(2007)
Science
, vol.318
, pp. 761-764
-
-
Aravin, A.A.1
Hannon, G.J.2
Brennecke, J.3
-
238
-
-
34547587566
-
Antiviral immunity directed by small RNAs
-
Ding SW, Voinnet O. Antiviral immunity directed by small RNAs. Cell 2007;130:413-26.
-
(2007)
Cell
, vol.130
, pp. 413-426
-
-
Ding, S.W.1
Voinnet, O.2
-
239
-
-
84875256553
-
A Major Epigenetic Programming Mechanism Guided by piRNAs
-
Huang XA, Yin H, Sweeney S, et al. A Major Epigenetic Programming Mechanism Guided by piRNAs. Developmental Cell 2013;24:502-16.
-
(2013)
Developmental Cell
, vol.24
, pp. 502-516
-
-
Huang, X.A.1
Yin, H.2
Sweeney, S.3
-
240
-
-
83255184978
-
Transgenerational inheritance of an acquired small RNA-based antiviral response in C
-
Rechavi O, Minevich G, Hobert O. Transgenerational inheritance of an acquired small RNA-based antiviral response in C. elegans. Cell 2011;147:1248-56.
-
(2011)
elegans. Cell
, vol.147
, pp. 1248-1256
-
-
Rechavi, O.1
Minevich, G.2
Hobert, O.3
-
241
-
-
33644829758
-
Dictyostelium transcriptional host cell response upon infection with Legionella
-
Farbrother P, Wagner C, Na J, et al. Dictyostelium transcriptional host cell response upon infection with Legionella. Cell Microbiol 2006;8:438-56.
-
(2006)
Cell Microbiol
, vol.8
, pp. 438-456
-
-
Farbrother, P.1
Wagner, C.2
Na, J.3
-
242
-
-
36749036028
-
Anopheles gambiae miRNAs as actors of defence reaction against Plasmodium invasion
-
Winter F, Edaye S, Huttenhofer A, et al. Anopheles gambiae miRNAs as actors of defence reaction against Plasmodium invasion. Nucleic Acids Res 2007;35:6953-62.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 6953-6962
-
-
Winter, F.1
Edaye, S.2
Huttenhofer, A.3
-
244
-
-
36849089086
-
A novel class of bacteria-induced small RNAs in Arabidopsis
-
Katiyar-Agarwal S, Gao S, Vivian-Smith A, et al. A novel class of bacteria-induced small RNAs in Arabidopsis. Genes Dev 2007;21:3123-34.
-
(2007)
Genes Dev
, vol.21
, pp. 3123-3134
-
-
Katiyar-Agarwal, S.1
Gao, S.2
Vivian-Smith, A.3
-
245
-
-
34250625175
-
Magnaporthe grisea infection triggers RNA variation and antisense transcript expression in rice
-
Gowda M, Venu RC, Li H, et al. Magnaporthe grisea infection triggers RNA variation and antisense transcript expression in rice. Plant Physiol 2007;144:524-33.
-
(2007)
Plant Physiol
, vol.144
, pp. 524-533
-
-
Gowda, M.1
Venu, R.C.2
Li, H.3
-
246
-
-
74049114522
-
Biotic stress-associated microRNAs: identification, detection, regulation, and functional analysis
-
Jay F, Renou JP, Voinnet O, et al. Biotic stress-associated microRNAs: identification, detection, regulation, and functional analysis. MethodsMol Biol 2010;592:183-202.
-
(2010)
MethodsMol Biol
, vol.592
, pp. 183-202
-
-
Jay, F.1
Renou, J.P.2
Voinnet, O.3
-
247
-
-
34250891308
-
Subtractive hybridization identifies novel differentially expressed ncRNA species in EBV-infected human B cells
-
Mrazek J, Kreutmayer SB, Grasser FA, et al. Subtractive hybridization identifies novel differentially expressed ncRNA species in EBV-infected human B cells. Nucleic Acids Res 2007;35:e73.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Mrazek, J.1
Kreutmayer, S.B.2
Grasser, F.A.3
-
248
-
-
45549103746
-
microRNAs and the immune response
-
Lindsay MA. microRNAs and the immune response. Trends Immunol 2008;29:343-51.
-
(2008)
Trends Immunol
, vol.29
, pp. 343-351
-
-
Lindsay, M.A.1
-
249
-
-
53749084653
-
Comparative genomics of small RNA regulatory pathway components in vector mosquitoes
-
Campbell CL, Black WCt, Hess AM, et al. Comparative genomics of small RNA regulatory pathway components in vector mosquitoes. BMCGenomics 2008;9:425.
-
(2008)
BMCGenomics
, vol.9
, pp. 425
-
-
Campbell, C.L.1
Black, W.C.T.2
Hess, A.M.3
-
250
-
-
35348927529
-
Noncoding transcription controls downstream promoters to regulate T-cell receptor alpha recombination
-
Abarrategui I, Krangel MS. Noncoding transcription controls downstream promoters to regulate T-cell receptor alpha recombination. EMBOJ 2007;26:4380-90.
-
(2007)
EMBOJ
, vol.26
, pp. 4380-4390
-
-
Abarrategui, I.1
Krangel, M.S.2
-
251
-
-
84867644266
-
Noncoding transcription within the Igh distal V(H) region at PAIR elements affects the 3D structure of the Igh locus in pro-B cells
-
Verma-Gaur J, Torkamani A, Schaffer L, et al. Noncoding transcription within the Igh distal V(H) region at PAIR elements affects the 3D structure of the Igh locus in pro-B cells. Proc Natl Acad Sci USA 2012;109: 17004-9.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 17004-17009
-
-
Verma-Gaur, J.1
Torkamani, A.2
Schaffer, L.3
-
252
-
-
30044434769
-
Experimental validation of the regulated expression of large numbers of noncoding RNAs from the mouse genome
-
Ravasi T, Suzuki H, Pang KC, et al. Experimental validation of the regulated expression of large numbers of noncoding RNAs from the mouse genome. GenomeRes 2006; 16:11-9.
-
(2006)
GenomeRes
, vol.16
, pp. 11-19
-
-
Ravasi, T.1
Suzuki, H.2
Pang, K.C.3
-
253
-
-
84866508252
-
Intronic RNAs constitute the major fraction of the non-coding RNA in mammalian cells
-
St Laurent G, Shtokalo D, Tackett MR, et al. Intronic RNAs constitute the major fraction of the non-coding RNA in mammalian cells. BMCGenomics 2012;13:504.
-
(2012)
BMCGenomics
, vol.13
, pp. 504
-
-
St Laurent, G.1
Shtokalo, D.2
Tackett, M.R.3
-
254
-
-
67649160600
-
Genome-wide identification of long noncoding RNAs in CD8p T cells
-
Pang KC, Dinger ME, Mercer TR, et al. Genome-wide identification of long noncoding RNAs in CD8p T cells. J Immunol 2009;182:7738-48.
-
(2009)
J Immunol
, vol.182
, pp. 7738-7748
-
-
Pang, K.C.1
Dinger, M.E.2
Mercer, T.R.3
-
255
-
-
40349116304
-
A cryptic unstable transcript mediates transcriptional trans-silencing of the Ty1 retrotransposon in S
-
Berretta J, Pinskaya M, Morillon A. A cryptic unstable transcript mediates transcriptional trans-silencing of the Ty1 retrotransposon in S. cerevisiae. Genes Dev 2008;22: 615-26.
-
(2008)
cerevisiae. Genes Dev
, vol.22
, pp. 615-626
-
-
Berretta, J.1
Pinskaya, M.2
Morillon, A.3
-
256
-
-
84863191310
-
Tye7 regulates yeast Ty1 retrotransposon sense and antisense transcription in response to adenylic nucleotides stress
-
Servant G, Pinson B, Tchalikian-Cosson A, et al. Tye7 regulates yeast Ty1 retrotransposon sense and antisense transcription in response to adenylic nucleotides stress. Nucleic Acids Res 2012;40:5271-82.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 5271-5282
-
-
Servant, G.1
Pinson, B.2
Tchalikian-Cosson, A.3
-
257
-
-
27744480835
-
Epstein-Barr virus: inhibition of apoptosis as a mechanism of cell transformation
-
Clemens MJ. Epstein-Barr virus: inhibition of apoptosis as a mechanism of cell transformation. Int J Biochem Cell Biol 2006;38:164-9.
-
(2006)
Int J Biochem Cell Biol
, vol.38
, pp. 164-169
-
-
Clemens, M.J.1
-
258
-
-
34347225099
-
The dsRNA protein kinase PKR: virus and cell control
-
Garcia MA, Meurs EF, Esteban M. The dsRNA protein kinase PKR: virus and cell control. Biochimie 2007; 89:799-811.
-
(2007)
Biochimie
, vol.89
, pp. 799-811
-
-
Garcia, M.A.1
Meurs, E.F.2
Esteban, M.3
-
259
-
-
84874202285
-
Viroids: a light in the darkness of the lncRNA-directed regulatory networks in plants
-
Gomez G, Pallas V. Viroids: a light in the darkness of the lncRNA-directed regulatory networks in plants. The New Phytol 2013;198:10-15.
-
(2013)
The New Phytol
, vol.198
, pp. 10-15
-
-
Gomez, G.1
Pallas, V.2
-
260
-
-
45549083208
-
New roles for large and small viral RNAs in evading host defences
-
Sullivan CS. New roles for large and small viral RNAs in evading host defences. Nat Rev Genet 2008;9:503-7.
-
(2008)
Nat Rev Genet
, vol.9
, pp. 503-507
-
-
Sullivan, C.S.1
-
261
-
-
60149111585
-
Viral RNAs: lessons from the enemy
-
Cullen BR. Viral RNAs: lessons from the enemy. Cell 2009;136:592-7.
-
(2009)
Cell
, vol.136
, pp. 592-597
-
-
Cullen, B.R.1
-
262
-
-
77957938117
-
Viruses, microRNAs, and host interactions
-
Skalsky RL, Cullen BR. Viruses, microRNAs, and host interactions. Annu RevMicrobiol 2010;64:123-41.
-
(2010)
Annu RevMicrobiol
, vol.64
, pp. 123-141
-
-
Skalsky, R.L.1
Cullen, B.R.2
-
263
-
-
34547132780
-
Host immune system gene targeting by a viral miRNA
-
Stern-Ginossar N, Elefant N, Zimmermann A, et al. Host immune system gene targeting by a viral miRNA. Science 2007;317:376-81.
-
(2007)
Science
, vol.317
, pp. 376-381
-
-
Stern-Ginossar, N.1
Elefant, N.2
Zimmermann, A.3
-
264
-
-
24644483623
-
Modulation of hepatitis C virus RNA abundance by a liver-specific MicroRNA
-
Jopling CL, Yi M, Lancaster AM, et al. Modulation of hepatitis C virus RNA abundance by a liver-specific MicroRNA. Science 2005;309:1577-81.
-
(2005)
Science
, vol.309
, pp. 1577-1581
-
-
Jopling, C.L.1
Yi, M.2
Lancaster, A.M.3
-
265
-
-
33747360451
-
MicroRNAs: expression, avoidance and subversion by vertebrate viruses
-
Sarnow P, Jopling CL, Norman KL, et al. MicroRNAs: expression, avoidance and subversion by vertebrate viruses. Nat RevMicrobiol 2006;4:651-9.
-
(2006)
Nat RevMicrobiol
, vol.4
, pp. 651-659
-
-
Sarnow, P.1
Jopling, C.L.2
Norman, K.L.3
-
266
-
-
77953798171
-
Down-regulation of a host microRNA by a Herpesvirus saimiri noncoding RNA
-
Cazalla D, Yario T, Steitz JA. Down-regulation of a host microRNA by a Herpesvirus saimiri noncoding RNA. Science 2010;328:1563-6.
-
(2010)
Science
, vol.328
, pp. 1563-1566
-
-
Cazalla, D.1
Yario, T.2
Steitz, J.A.3
-
267
-
-
8644247492
-
Adenovirus VA1 noncoding RNA can inhibit small interfering RNA and MicroRNA biogenesis
-
Lu S, Cullen BR. Adenovirus VA1 noncoding RNA can inhibit small interfering RNA and MicroRNA biogenesis. JVirol 2004;78:12868-76.
-
(2004)
JVirol
, vol.78
, pp. 12868-12876
-
-
Lu, S.1
Cullen, B.R.2
-
268
-
-
33344465450
-
Sequence-specific interference by small RNAs derived from adenovirus VAI RNA
-
Sano M, Kato Y, Taira K. Sequence-specific interference by small RNAs derived from adenovirus VAI RNA. FEBS Lett 2006;580:1553-64.
-
(2006)
FEBS Lett
, vol.580
, pp. 1553-1564
-
-
Sano, M.1
Kato, Y.2
Taira, K.3
-
269
-
-
57049096375
-
A highly structured, nuclease-resistant, noncoding RNA produced by flaviviruses is required for pathogenicity
-
Pijlman GP, Funk A, Kondratieva N, et al. A highly structured, nuclease-resistant, noncoding RNA produced by flaviviruses is required for pathogenicity. Cell HostMicrobe 2008;4:579-91.
-
(2008)
Cell HostMicrobe
, vol.4
, pp. 579-591
-
-
Pijlman, G.P.1
Funk, A.2
Kondratieva, N.3
-
270
-
-
35148862058
-
Antisense transcription in the human cytomegalovirus transcriptome
-
Zhang G, Raghavan B, Kotur M, et al. Antisense transcription in the human cytomegalovirus transcriptome. J Virol 2007;81:11267-81.
-
(2007)
J Virol
, vol.81
, pp. 11267-11281
-
-
Zhang, G.1
Raghavan, B.2
Kotur, M.3
-
271
-
-
34249871137
-
Complex I binding by a virally encoded RNA regulates mitochondriainduced cell death
-
Reeves MB, Davies AA, McSharry BP, et al. Complex I binding by a virally encoded RNA regulates mitochondriainduced cell death. Science 2007;316:1345-8.
-
(2007)
Science
, vol.316
, pp. 1345-1348
-
-
Reeves, M.B.1
Davies, A.A.2
McSharry, B.P.3
-
272
-
-
0029966233
-
Polyadenylylated nuclear RNA encoded by Kaposi sarcoma-associated herpesvirus
-
Sun R, Lin SF, Gradoville L, etal. Polyadenylylated nuclear RNA encoded by Kaposi sarcoma-associated herpesvirus. Proc Natl Acad Sci USA 1996;93:11883-8.
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 11883-11888
-
-
Sun, R.1
Lin, S.F.2
Gradoville, L.3
-
273
-
-
0031015210
-
Characterization of ribonucleoprotein complexes containing an abundant polyadenylated nuclear RNA encoded by Kaposi's sarcoma-associated herpesvirus (human herpesvirus 8)
-
Zhong W, Ganem D. Characterization of ribonucleoprotein complexes containing an abundant polyadenylated nuclear RNA encoded by Kaposi's sarcoma-associated herpesvirus (human herpesvirus 8). JVirol 1997;71:1207-12.
-
(1997)
JVirol
, vol.71
, pp. 1207-1212
-
-
Zhong, W.1
Ganem, D.2
-
274
-
-
47549105524
-
Primary microRNA transcript retention at sites of transcription leads to enhanced microRNA production
-
Pawlicki JM, Steitz JA. Primary microRNA transcript retention at sites of transcription leads to enhanced microRNA production. JCell Biol 2008;182:61-76.
-
(2008)
JCell Biol
, vol.182
, pp. 61-76
-
-
Pawlicki, J.M.1
Steitz, J.A.2
-
275
-
-
80055064878
-
A viral nuclear noncoding RNA binds re-localized poly(A) binding protein and is required for late KSHV gene expression
-
Borah S, Darricarrere N, Darnell A, et al. A viral nuclear noncoding RNA binds re-localized poly(A) binding protein and is required for late KSHV gene expression. PLoS Pathog 2011;7:e1002300.
-
(2011)
PLoS Pathog
, vol.7
-
-
Borah, S.1
Darricarrere, N.2
Darnell, A.3
-
276
-
-
84877336707
-
Regulation of viral and cellular gene expression by Kaposi's sarcoma associated herpesvirus (KSHV) PAN RNA
-
Rossetto CC, Tarrant-Elorza M, Verma S, etal. Regulation of viral and cellular gene expression by Kaposi's sarcoma associated herpesvirus (KSHV) PAN RNA. JVirol 2013;87: 5540-53.
-
(2013)
JVirol
, vol.87
, pp. 5540-5553
-
-
Rossetto, C.C.1
Tarrant-Elorza, M.2
Verma, S.3
-
277
-
-
35148862058
-
Antisense transcription in the human cytomegalovirus transcriptome
-
Zhang G, Raghavan B, Kotur M, et al. Antisense transcription in the human cytomegalovirus transcriptome. J Virol 2007;81:11267-81.
-
(2007)
J Virol
, vol.81
, pp. 11267-11281
-
-
Zhang, G.1
Raghavan, B.2
Kotur, M.3
-
278
-
-
77951996351
-
Array-based transcript profiling and limiting-dilution reverse transcription-PCR analysis identify additional latent genes in Kaposi's sarcoma-associated herpesvirus
-
Chandriani S, Ganem D. Array-based transcript profiling and limiting-dilution reverse transcription-PCR analysis identify additional latent genes in Kaposi's sarcoma-associated herpesvirus. JVirol 2010;84:5565-73.
-
(2010)
JVirol
, vol.84
, pp. 5565-5573
-
-
Chandriani, S.1
Ganem, D.2
-
279
-
-
84863703084
-
KSHV PAN RNA associates with demethylases UTX and JMJD3 to activate lytic replication through a physical interaction with the virus genome
-
Rossetto CC, Pari G. KSHV PAN RNA associates with demethylases UTX and JMJD3 to activate lytic replication through a physical interaction with the virus genome. PLoS Pathog 2012;8:e1002680.
-
(2012)
PLoS Pathog
, vol.8
-
-
Rossetto, C.C.1
Pari, G.2
-
280
-
-
22544463666
-
Suppression of RNA interference by adenovirus virus-associated RNA
-
Andersson MG, Haasnoot PC, Xu N, et al. Suppression of RNA interference by adenovirus virus-associated RNA. JVirol 2005;79:9556-65.
-
(2005)
JVirol
, vol.79
, pp. 9556-9565
-
-
Andersson, M.G.1
Haasnoot, P.C.2
Xu, N.3
-
281
-
-
33646116314
-
Uncoupling of RNA binding and PKR kinase activation by viral inhibitor RNAs
-
McKenna SA, Kim I, Liu CW, et al. Uncoupling of RNA binding and PKR kinase activation by viral inhibitor RNAs. JMol Biol 2006;358:1270-85.
-
(2006)
JMol Biol
, vol.358
, pp. 1270-1285
-
-
McKenna, S.A.1
Kim, I.2
Liu, C.W.3
-
282
-
-
34648830866
-
Adenovirus virus-associated RNAII-derived small RNAs are efficiently incorporated into the rna-induced silencing complex and associate with polyribosomes
-
Xu N, Segerman B, Zhou X, et al. Adenovirus virus-associated RNAII-derived small RNAs are efficiently incorporated into the rna-induced silencing complex and associate with polyribosomes. JVirol 2007;81:10540-9.
-
(2007)
JVirol
, vol.81
, pp. 10540-10549
-
-
Xu, N.1
Segerman, B.2
Zhou, X.3
-
283
-
-
0020425067
-
Adenovirus VAI RNA is required for efficient translation of viral mRNAs at late times after infection
-
Thimmappaya B, Weinberger C, Schneider RJ, et al. Adenovirus VAI RNA is required for efficient translation of viral mRNAs at late times after infection. Cell 1982;31: 543-51.
-
(1982)
Cell
, vol.31
, pp. 543-551
-
-
Thimmappaya, B.1
Weinberger, C.2
Schneider, R.J.3
-
284
-
-
0025971705
-
Binding of Epstein-Barr virus small RNA EBER-1 to the doublestranded RNA-activated protein kinase DAI
-
Clarke PA, Schwemmle M, Schickinger J, et al. Binding of Epstein-Barr virus small RNA EBER-1 to the doublestranded RNA-activated protein kinase DAI. Nucleic Acids Res 1991;19:243-8.
-
(1991)
Nucleic Acids Res
, vol.19
, pp. 243-248
-
-
Clarke, P.A.1
Schwemmle, M.2
Schickinger, J.3
-
285
-
-
0027487288
-
Comparative analysis of the regulation of the interferon-inducible protein kinase PKR by Epstein-Barr virus RNAs EBER- 1 and EBER-2 and adenovirus VAI RNA
-
Sharp TV, Schwemmle M, Jeffrey I, et al. Comparative analysis of the regulation of the interferon-inducible protein kinase PKR by Epstein-Barr virus RNAs EBER- 1 and EBER-2 and adenovirus VAI RNA. NucleicAcidsRes 1993;21:4483-90.
-
(1993)
NucleicAcidsRes
, vol.21
, pp. 4483-4490
-
-
Sharp, T.V.1
Schwemmle, M.2
Jeffrey, I.3
-
286
-
-
25144457575
-
Epstein-Barr virusencoded poly(A)- RNA confers resistance to apoptosis mediated through Fas by blocking the PKR pathway in human epithelial intestine 407 cells
-
Nanbo A, Yoshiyama H, Takada K. Epstein-Barr virusencoded poly(A)- RNA confers resistance to apoptosis mediated through Fas by blocking the PKR pathway in human epithelial intestine 407 cells. JVirol 2005;79:12280-5.
-
(2005)
JVirol
, vol.79
, pp. 12280-12285
-
-
Nanbo, A.1
Yoshiyama, H.2
Takada, K.3
-
287
-
-
0023151632
-
Nucleotide sequence of the most abundantly transcribed early gene of human cytomegalovirus strain AD169
-
Greenaway PJ, Wilkinson GW. Nucleotide sequence of the most abundantly transcribed early gene of human cytomegalovirus strain AD169. Virus Res 1987;7:17-31.
-
(1987)
Virus Res
, vol.7
, pp. 17-31
-
-
Greenaway, P.J.1
Wilkinson, G.W.2
-
288
-
-
77349084163
-
Cytomegalovirus beta2.7 RNA transcript protects endothelial cells against apoptosis during ischemia/reperfusion injury.
-
Zhao J, Sinclair J, Houghton J, et al. Cytomegalovirus beta2.7 RNA transcript protects endothelial cells against apoptosis during ischemia/reperfusion injury. J Heart Lung Transplant 2010;29:342-5.
-
(2010)
J Heart Lung Transplant
, vol.29
, pp. 342-345
-
-
Zhao, J.1
Sinclair, J.2
Houghton, J.3
-
289
-
-
67649268395
-
The Listeria transcriptional landscape from saprophytism to virulence
-
Toledo-Arana A, Dussurget O, Nikitas G, etal. The Listeria transcriptional landscape from saprophytism to virulence. Nature 2009;459:950-6.
-
(2009)
Nature
, vol.459
, pp. 950-956
-
-
Toledo-Arana, A.1
Dussurget, O.2
Nikitas, G.3
-
290
-
-
70349462763
-
Evidence for a major role of antisense RNAs in cyanobacterial gene regulation
-
Georg J, Voss B, Scholz I, etal. Evidence for a major role of antisense RNAs in cyanobacterial gene regulation. MolSyst Biol 2009;5:305.
-
(2009)
MolSyst Biol
, vol.5
, pp. 305
-
-
Georg, J.1
Voss, B.2
Scholz, I.3
-
291
-
-
70849119931
-
Transcriptome complexity in a genome-reduced bacterium
-
GuellM, vanNoortV,Yus E, etal.Transcriptome complexity in a genome-reduced bacterium. Science 2009;326:1268-71.
-
(2009)
Science
, vol.326
, pp. 1268-1271
-
-
Guell, M.1
van Noort, V.2
Yus, E.3
-
292
-
-
70349339300
-
Transposable elements: powerful facilitators of evolution
-
Oliver KR, Greene WK. Transposable elements: powerful facilitators of evolution. Bioessays 2009;31:703-14.
-
(2009)
Bioessays
, vol.31
, pp. 703-714
-
-
Oliver, K.R.1
Greene, W.K.2
-
293
-
-
77949425194
-
The primary transcriptome of the major human pathogen Helicobacter pylori
-
Sharma CM, Hoffmann S, Darfeuille F, et al. The primary transcriptome of the major human pathogen Helicobacter pylori. Nature 2010;464:250-5.
-
(2010)
Nature
, vol.464
, pp. 250-255
-
-
Sharma, C.M.1
Hoffmann, S.2
Darfeuille, F.3
-
294
-
-
84860715141
-
Comparative transcriptomics of pathogenic and non-pathogenic Listeria species
-
Wurtzel O, Sesto N, Mellin JR, et al. Comparative transcriptomics of pathogenic and non-pathogenic Listeria species. Mol Syst Biol 2012;8:583.
-
(2012)
Mol Syst Biol
, vol.8
, pp. 583
-
-
Wurtzel, O.1
Sesto, N.2
Mellin, J.R.3
-
296
-
-
84874028128
-
Transcription of a cis-acting, noncoding, small RNA is required for pilin antigenic variation in Neisseria gonorrhoeae
-
Cahoon LA, Seifert HS. Transcription of a cis-acting, noncoding, small RNA is required for pilin antigenic variation in Neisseria gonorrhoeae. PLoS Pathog 2013;9:e1003074.
-
(2013)
PLoS Pathog
, vol.9
-
-
Cahoon, L.A.1
Seifert, H.S.2
-
297
-
-
33947387973
-
A novel nonprotein- coding infection-specific gene family is clustered throughout the genome of Phytophthora infestans
-
Avrova AO, Whisson SC, Pritchard L, et al. A novel nonprotein- coding infection-specific gene family is clustered throughout the genome of Phytophthora infestans. Microbiology 2007;153:747-59.
-
(2007)
Microbiology
, vol.153
, pp. 747-759
-
-
Avrova, A.O.1
Whisson, S.C.2
Pritchard, L.3
-
298
-
-
77955847209
-
Non-coding RNA in apicomplexan parasites
-
Matrajt M. Non-coding RNA in apicomplexan parasites. Mol Biochem Parasitol 2010;174:1-7.
-
(2010)
Mol Biochem Parasitol
, vol.174
, pp. 1-7
-
-
Matrajt, M.1
-
300
-
-
58149089272
-
Chromatin associated sense and antisense noncoding RNAs are transcribed from the var gene family of virulence genes of the malaria parasite Plasmodium falciparum
-
Epp C, Li F, Howitt CA, et al. Chromatin associated sense and antisense noncoding RNAs are transcribed from the var gene family of virulence genes of the malaria parasite Plasmodium falciparum. RNA 2009;15:116-27.
-
(2009)
RNA
, vol.15
, pp. 116-127
-
-
Epp, C.1
Li, F.2
Howitt, C.A.3
-
301
-
-
79959284685
-
A global transcriptional analysis of Plasmodium falciparum malaria reveals a novel family of telomere-associated lncRNAs
-
Broadbent KM, Park D, Wolf AR, et al. A global transcriptional analysis of Plasmodium falciparum malaria reveals a novel family of telomere-associated lncRNAs. Genome Biol 2011;12:R56.
-
(2011)
Genome Biol
, vol.12
-
-
Broadbent, K.M.1
Park, D.2
Wolf, A.R.3
-
302
-
-
84872189965
-
Disruption of the expression of a non-coding RNA significantly impairs cellular differentiation in Toxoplasma gondii
-
Patil V, Lescault PJ, Lirussi D, et al. Disruption of the expression of a non-coding RNA significantly impairs cellular differentiation in Toxoplasma gondii. IntJMol Sci 2012;14: 611-24.
-
(2012)
IntJMol Sci
, vol.14
, pp. 611-624
-
-
Patil, V.1
Lescault, P.J.2
Lirussi, D.3
-
303
-
-
0028631058
-
Introns: evolution and function
-
Mattick JS. Introns: evolution and function. Curr Opin Genet Dev 1994;4:823-31.
-
(1994)
Curr Opin Genet Dev
, vol.4
, pp. 823-831
-
-
Mattick, J.S.1
-
304
-
-
77957929225
-
Intergenic and repeat transcription in human, chimpanzee and macaque brains measured by RNA-Seq
-
Xu AG, He L, Li Z, et al. Intergenic and repeat transcription in human, chimpanzee and macaque brains measured by RNA-Seq. PLoSComput Biol 2010;6:e1000843.
-
(2010)
PLoSComput Biol
, vol.6
-
-
Xu, A.G.1
He, L.2
Li, Z.3
-
305
-
-
70349320089
-
MicroRNAs and metazoan macroevolution: insights into canalization, complexity, and the Cambrian explosion
-
Peterson KJ, Dietrich MR, McPeek MA. MicroRNAs and metazoan macroevolution: insights into canalization, complexity, and the Cambrian explosion. BioEssays 2009;31: 736-47.
-
(2009)
BioEssays
, vol.31
, pp. 736-747
-
-
Peterson, K.J.1
Dietrich, M.R.2
McPeek, M.A.3
-
306
-
-
70449707787
-
Pervasive transcription of the eukaryotic genome: functional indices and conceptual implications
-
Dinger ME, Amaral PP, Mercer TR, et al. Pervasive transcription of the eukaryotic genome: functional indices and conceptual implications. Brief Funct Genomic Proteomic 2009; 8:407-23.
-
(2009)
Brief Funct Genomic Proteomic
, vol.8
, pp. 407-423
-
-
Dinger, M.E.1
Amaral, P.P.2
Mercer, T.R.3
-
307
-
-
77952905505
-
Most ''dark matter'' transcripts are associated with known genes
-
van Bakel H, Nislow C, Blencowe BJ, et al. Most ''dark matter'' transcripts are associated with known genes. PLoS Biol 2010;8:e1000371.
-
(2010)
PLoS Biol
, vol.8
-
-
van Bakel, H.1
Nislow, C.2
Blencowe, B.J.3
-
308
-
-
64249144494
-
A microRNA imparts robustness against environmental fluctuation during development
-
Li X, Cassidy JJ, Reinke CA, et al. A microRNA imparts robustness against environmental fluctuation during development. Cell 2009;137:273-82.
-
(2009)
Cell
, vol.137
, pp. 273-282
-
-
Li, X.1
Cassidy, J.J.2
Reinke, C.A.3
-
309
-
-
0023279043
-
Neural BC1 RNA: cDNA clones reveal nonrepetitive sequence content
-
DeChiara TM, Brosius J. Neural BC1 RNA: cDNA clones reveal nonrepetitive sequence content. Proc Natl Acad Sci USA 1987;84:2624-8.
-
(1987)
Proc Natl Acad Sci USA
, vol.84
, pp. 2624-2628
-
-
DeChiara, T.M.1
Brosius, J.2
-
310
-
-
78649524251
-
Regulatory BC1 RNA and the fragile X mental retardation protein: convergent functionality in brain
-
Zhong J, Chuang SC, Bianchi R, et al. Regulatory BC1 RNA and the fragile X mental retardation protein: convergent functionality in brain. PLoSONE 2010;5:e15509.
-
(2010)
PLoSONE
, vol.5
-
-
Zhong, J.1
Chuang, S.C.2
Bianchi, R.3
-
311
-
-
84870794989
-
Ancient, giant riboswitches at atomic resolution
-
Breaker RR. Ancient, giant riboswitches at atomic resolution. Nat StructMol Biol 2012;19:1208-9.
-
(2012)
Nat StructMol Biol
, vol.19
, pp. 1208-1209
-
-
Breaker, R.R.1
-
312
-
-
33745744196
-
Molecular basis for temperature sensing by an RNA thermometer
-
Chowdhury S, Maris C, Allain FH, et al. Molecular basis for temperature sensing by an RNA thermometer. EMBO J 2006;25:2487-97.
-
(2006)
EMBO J
, vol.25
, pp. 2487-2497
-
-
Chowdhury, S.1
Maris, C.2
Allain, F.H.3
-
314
-
-
84868009378
-
Genome-wide measurement of RNA folding energies
-
Wan Y, Qu K, Ouyang Z, et al. Genome-wide measurement of RNA folding energies. Mol Cell 2012;48:169-81.
-
(2012)
Mol Cell
, vol.48
, pp. 169-181
-
-
Wan, Y.1
Qu, K.2
Ouyang, Z.3
-
315
-
-
60149091561
-
A stress-responsive RNA switch regulates VEGFA expression
-
Ray PS, Jia J, Yao P, et al. A stress-responsive RNA switch regulates VEGFA expression. Nature 2009;457:915-19.
-
(2009)
Nature
, vol.457
, pp. 915-919
-
-
Ray, P.S.1
Jia, J.2
Yao, P.3
-
316
-
-
39549103642
-
Human Alu RNA is a modular transacting repressor of mRNA transcription during heat shock
-
Mariner PD, Walters RD, Espinoza CA, et al. Human Alu RNA is a modular transacting repressor of mRNA transcription during heat shock. Mol Cell 2008; 29:499-509.
-
(2008)
Mol Cell
, vol.29
, pp. 499-509
-
-
Mariner, P.D.1
Walters, R.D.2
Espinoza, C.A.3
-
317
-
-
84867010562
-
Escherichia coli noncoding RNAs can affect gene expression and physiology of Caenorhabditis elegans
-
Liu H, Wang X, Wang HD, et al. Escherichia coli noncoding RNAs can affect gene expression and physiology of Caenorhabditis elegans. Nat Commun 2012;3:1073.
-
(2012)
Nat Commun
, vol.3
, pp. 1073
-
-
Liu, H.1
Wang, X.2
Wang, H.D.3
-
318
-
-
79953192529
-
Mechanism of downregulation of RNA polymerase III-transcribed non-coding RNA genes in macrophages by Leishmania
-
Rana T, Misra S, Mittal MK, et al. Mechanism of downregulation of RNA polymerase III-transcribed non-coding RNA genes in macrophages by Leishmania. J Biol Chem 2011;286:6614-26.
-
(2011)
J Biol Chem
, vol.286
, pp. 6614-6626
-
-
Rana, T.1
Misra, S.2
Mittal, M.K.3
-
319
-
-
84868372186
-
An evolutionary link between natural transformation and CRISPR adaptive immunity
-
Jorth P, Whiteley M. An evolutionary link between natural transformation and CRISPR adaptive immunity. MBio 2012;3.
-
(2012)
MBio
, vol.3
-
-
Jorth, P.1
Whiteley, M.2
-
320
-
-
84869492915
-
Epigenetic variations in heredity and evolution
-
Jablonka E. Epigenetic variations in heredity and evolution. Clin PharmacolTher 2012;92:683-8.
-
(2012)
Clin PharmacolTher
, vol.92
, pp. 683-688
-
-
Jablonka, E.1
-
321
-
-
84857374518
-
RNA editing underlies temperature adaptation in Kp channels from polar octopuses
-
Garrett S, Rosenthal JJ. RNA editing underlies temperature adaptation in Kp channels from polar octopuses. Science 2012;335:848-51.
-
(2012)
Science
, vol.335
, pp. 848-851
-
-
Garrett, S.1
Rosenthal, J.J.2
-
322
-
-
78649267733
-
Grand challenge commentary: RNA epigenetics?
-
He C. Grand challenge commentary: RNA epigenetics? Nat ChemBiol 2010;6:863-5.
-
(2010)
Nat ChemBiol
, vol.6
, pp. 863-865
-
-
He, C.1
-
323
-
-
66249103703
-
RNA granules: post-transcriptional and epigenetic modulators of gene expression, nature reviews
-
Anderson P, Kedersha N. RNA granules: post-transcriptional and epigenetic modulators of gene expression, nature reviews. Mol Cell Biol 2009;10:430-6.
-
(2009)
Mol Cell Biol
, vol.10
, pp. 430-436
-
-
Anderson, P.1
Kedersha, N.2
-
324
-
-
17744388101
-
Characterization of the genomic Xist locus in rodents reveals conservation of overall gene structure and tandem repeats but rapid evolution of unique sequence
-
Nesterova TB, Slobodyanyuk SY, Elisaphenko EA, et al. Characterization of the genomic Xist locus in rodents reveals conservation of overall gene structure and tandem repeats but rapid evolution of unique sequence. Genome Res 2001;11:833-49.
-
(2001)
Genome Res
, vol.11
, pp. 833-849
-
-
Nesterova, T.B.1
Slobodyanyuk, S.Y.2
Elisaphenko, E.A.3
-
325
-
-
43249131622
-
Small RNA-directed epigenetic natural variation in Arabidopsis thaliana
-
Zhai J, Liu J, Liu B, et al. Small RNA-directed epigenetic natural variation in Arabidopsis thaliana. PLoS Genet 2008; 4:e1000056.
-
(2008)
PLoS Genet
, vol.4
-
-
Zhai, J.1
Liu, J.2
Liu, B.3
-
326
-
-
84862777313
-
Big roles for small RNAs in polyploidy, hybrid vigor, and hybrid incompatibility
-
Ng DW, Lu J, Chen ZJ. Big roles for small RNAs in polyploidy, hybrid vigor, and hybrid incompatibility. CurrentOpin Plant Biol 2012;15:154-61.
-
(2012)
CurrentOpin Plant Biol
, vol.15
, pp. 154-161
-
-
Ng, D.W.1
Lu, J.2
Chen, Z.J.3
-
327
-
-
57149104113
-
An epigenetic role for maternally inherited piRNAs in transposon silencing
-
Brennecke J, Malone CD, Aravin AA, et al. An epigenetic role for maternally inherited piRNAs in transposon silencing. Science 2008;322:1387-92.
-
(2008)
Science
, vol.322
, pp. 1387-1392
-
-
Brennecke, J.1
Malone, C.D.2
Aravin, A.A.3
-
328
-
-
84863628945
-
piRNAmediated transgenerational inheritance of an acquired trait
-
Grentzinger T, Armenise C, Brun C, et al. piRNAmediated transgenerational inheritance of an acquired trait. Genome Res 2012;22:1877-88.
-
(2012)
Genome Res
, vol.22
, pp. 1877-1888
-
-
Grentzinger, T.1
Armenise, C.2
Brun, C.3
-
329
-
-
84863611417
-
piRNAs can trigger a multigenerational epigenetic memory in the germline of C
-
Ashe A, Sapetschnig A, Weick EM, et al. piRNAs can trigger a multigenerational epigenetic memory in the germline of C. elegans. Cell 2012;150:88-99.
-
(2012)
elegans. Cell
, vol.150
, pp. 88-99
-
-
Ashe, A.1
Sapetschnig, A.2
Weick, E.M.3
-
330
-
-
84867053720
-
Reprogramming of DNA methylation in pollen guides epigenetic inheritance via small RNA
-
Calarco JP, Borges F, Donoghue MT, et al. Reprogramming of DNA methylation in pollen guides epigenetic inheritance via small RNA. Cell 2012;151:194-205.
-
(2012)
Cell
, vol.151
, pp. 194-205
-
-
Calarco, J.P.1
Borges, F.2
Donoghue, M.T.3
-
331
-
-
84867193062
-
Transgenerational defense induction and epigenetic inheritance in plants
-
Holeski LM, Jander G, Agrawal AA. Transgenerational defense induction and epigenetic inheritance in plants. Trends Ecol Evol 2012;27:618-26.
-
(2012)
Trends Ecol Evol
, vol.27
, pp. 618-626
-
-
Holeski, L.M.1
Jander, G.2
Agrawal, A.A.3
-
333
-
-
0035020801
-
Transgenerational consequences of plant responses to herbivory: an adaptive maternal effect?
-
Agrawal AA. Transgenerational consequences of plant responses to herbivory: an adaptive maternal effect? AmerNat 2001;157:555-69.
-
(2001)
AmerNat
, vol.157
, pp. 555-569
-
-
Agrawal, A.A.1
-
334
-
-
84859199684
-
Gene expression and stress response mediated by the epigenetic regulation of a transposable element small RNA
-
McCue AD, Nuthikattu S, Reeder SH, et al. Gene expression and stress response mediated by the epigenetic regulation of a transposable element small RNA. PLoS Genet 2012;8:e1002474.
-
(2012)
PLoS Genet
, vol.8
-
-
McCue, A.D.1
Nuthikattu, S.2
Reeder, S.H.3
-
335
-
-
84861909717
-
Epigenetic transgenerational inheritance of altered stress responses
-
Crews D, Gillette R, Scarpino SV, et al. Epigenetic transgenerational inheritance of altered stress responses. ProcNatl Acad SciUSA 2012;109:9143-8.
-
(2012)
ProcNatl Acad SciUSA
, vol.109
, pp. 9143-9148
-
-
Crews, D.1
Gillette, R.2
Scarpino, S.V.3
-
336
-
-
84869881863
-
Transposable elements reveal a stem cellspecific class of long noncoding RNAs
-
Kelley D, Rinn J. Transposable elements reveal a stem cellspecific class of long noncoding RNAs. Genome Biol 2012; 13:R107.
-
(2012)
Genome Biol
, vol.13
-
-
Kelley, D.1
Rinn, J.2
-
337
-
-
84875226981
-
Chromatin signatures and retrotransposon profiling in mouse embryos reveal regulation of LINE-1 by RNA
-
Fadloun A, Le Gras S, Jost B, et al. Chromatin signatures and retrotransposon profiling in mouse embryos reveal regulation of LINE-1 by RNA. Nat StructMol Biol 2013;20: 332-8.
-
(2013)
Nat StructMol Biol
, vol.20
, pp. 332-338
-
-
Fadloun, A.1
Le Gras, S.2
Jost, B.3
-
338
-
-
33947303168
-
Transposable elements and the epigenetic regulation of the genome
-
Slotkin RK, Martienssen R. Transposable elements and the epigenetic regulation of the genome. Nat Rev Genet 2007; 8:272-85.
-
(2007)
Nat Rev Genet
, vol.8
, pp. 272-285
-
-
Slotkin, R.K.1
Martienssen, R.2
-
339
-
-
21844454763
-
Stress-induced variation in evolution: from behavioural plasticity to genetic assimilation
-
Badyaev AV. Stress-induced variation in evolution: from behavioural plasticity to genetic assimilation. Proc Biol Sci/R Soc 2005;272:877-86.
-
(2005)
Proc Biol Sci/R Soc
, vol.272
, pp. 877-886
-
-
Badyaev, A.V.1
-
340
-
-
47649125318
-
Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation
-
Lopez-Maury L, Marguerat S, Bahler J. Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation. Nat Rev Genet 2008;9:583-93.
-
(2008)
Nat Rev Genet
, vol.9
, pp. 583-593
-
-
Lopez-Maury, L.1
Marguerat, S.2
Bahler, J.3
|