Escherichia coli noncoding RNAs can affect gene expression and physiology of Caenorhabditis elegans

Nature Communications

Volumn 3, Issue , 2012, Pages

  Liu, Huijie ^a   Wang, Xueren ^b   Wang, Horng Dar ^c   Wu, Jinjing ^a,b   Ren, Jing ^a,b   Meng, Lingfeng ^d   Wu, Qingfa ^a   Dong, Hansheng ^a,d   Wu, Jing ^a,d   Kao, Tzu Yu ^c   Ge, Qian ^d   Wu, Zheng Xing ^d   Yuh, Chiou Hwa ^e   Shan, Ge ^a  

^a UNIVERSITY OF SCIENCE AND TECHNOLOGY OF CHINA   (China)

^b HUAZHONG UNIVERSITY OF SCIENCE AND TECHNOLOGY   (China)

^c NATIONAL TSING HUA UNIVERSITY   (Taiwan)

^d HUAZHONG UNIVERSITY OF SCIENCE AND TECHNOLOGY   (China)

^e NATIONAL HEALTH RESEARCH INSTITUTES   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

LIPOPROTEIN LIPASE; UNTRANSLATED RNA;

ARTICLE; BACTERIAL GENE; BACTERIAL PHENOMENA AND FUNCTIONS; CAENORHABDITIS ELEGANS; CONTROLLED STUDY; DOWN REGULATION; ESCHERICHIA COLI; GENE EXPRESSION REGULATION; GENE REPRESSION; LONGEVITY; NONHUMAN; RNA INTERFERENCE;

ANIMALS; CAENORHABDITIS ELEGANS; ESCHERICHIA COLI; RNA, BACTERIAL; RNA, UNTRANSLATED;

ANIMALIA; BACILLUS MYCOIDES; BACTERIA (MICROORGANISMS); CAENORHABDITIS ELEGANS; ESCHERICHIA COLI;

EID: 84867010562     PISSN: None     EISSN: 20411723     Source Type: Journal    
DOI: 10.1038/ncomms2071     Document Type: Article

References (32)

1. Ng, S. F. et al. Chronic high-fat diet in fathers programs b-cell dysfunction in female rat offspring. Nature 467, 963-966 (2010).
2. Prahlad, V., Pilgrim, D. & Goodwin, E. B. Roles for mating and environment in C. elegans sex determination. Science 302, 1046-1049 (2003). (Pubitemid 37386198)
3. Whangbo, J. S. & Hunter, C. P. Environmental RNA interference. Trends Genet. 24, 297-305 (2008).
4. Timmons, L. & Fire, A. Specific interference by ingested dsRNA. Nature 395, 854 (1998).
5. Fischer, S. E. Small RNA mediated gene silencing pathways in C. elegans. Int. J. Biochem. Cell Biol. 42, 1306-1315 (2010).
6. Gottesman, S. The small RNA regulators of Escherichia coli: roles and mechanisms. Annu. Rev. Microbiol. 58, 303-328 (2004). (Pubitemid 39551989)
7. Storz, G., Vogel, J. & Wassarman, K. M. Regulation by small RNAs in bacteria: expanding frontiers. Mol. Cell 43, 880-891 (2011).
8. Altuvia, S., Weinstein-Fischer, D., Zhang, A., Postow, L. & Storz, G. A small, stable RNA induced by oxidative stress: role as a pleiotropic regulator and antimutator. Cell 90, 43-53 (1997). (Pubitemid 28009417)
9. Hills, T., Brockie, P. J. & Maricq, A. V. Dopamine and glutamate control arearestricted search behavior in Caenorhabditis elegans. J. Neurosci. 24, 1217-1225 (2004). (Pubitemid 38177028)
10. Fujiwara, M., Ishihara, T. & Katsura, I. A novel WD40 protein, CHE-2, acts cell-autonomously in the formation of C. elegans sensory cilia. Development 126, 4839-4848 (1999).
11. Majdalani, N., Cunning, C., Sledjeski, D., Elliott, T. & Gottesman, S. DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcription. Proc. Natl Acad. Sci. USA 95, 12462-12467 (1998). (Pubitemid 28483787)
12. Kenyon, C. J. The genetics of ageing. Nature 464, 504-512 (2010).
13. Hekimi, S. & Guarente, L. Genetics and the specificity of the aging process. Science 299, 1351-1354 (2003). (Pubitemid 36254640)
14. Winston, W. M., Molodowitch, C. & Hunter, C. P. Systemic RNAi in C. elegans requires the putative transmembrane protein SID-1. Science 295, 2456-2459 (2002). (Pubitemid 34270260)
15. Winston, W. M., Sutherlin, M., Wright, A. J., Feinberg, E. H. & Hunter, C. P. Caenorhabditis elegans SID-2 is required for environmental RNA interference. Proc. Natl Acad. Sci. USA 104, 10565-10570 (2007). (Pubitemid 47185705)
16. Sundaram, P., Echalier, B., Han, W., Hull, D. & Timmons, L. ATP-binding cassette transporters are required for efficient RNA interference in Caenorhabditis elegans. Mol. Biol. Cell 17, 3678-3688 (2006). (Pubitemid 44156458)
17. Batista, P. J. et al. PRG-1 and 21U-RNAs interact to form the piRNA complex required for fertility in C. elegans. Mol. Cell 31, 67-78 (2008).
18. Kiontke, K. & Sudhaus, W. Ecology of Caenorhabditis species. WormBook 9, 1-14 (2006).
19. Rouget, C. et al. Maternal mRNA deadenylation and decay by the piRNA pathway in the early Drosophila embryo. Nature 467, 1128-1132 (2010).
20. Freyth, K. et al. Reproductive fitness and dietary choice behavior of the genetic model organism Caenorhabditis elegans under semi-natural conditions. Mol. Cell 30, 347-353 (2010).
21. Abada, E. A. et al. C. elegans behavior of preference choice on bacterial food. Mol. Cell 28, 209-213 (2009).
22. Holland, I. B. ABC transporters, mechanisms and biology: an overview. Essays Biochem. 50, 1-17 (2011).
23. Rechavi, O., Minevich, G. & Hobert, O. Transgenerational inheritance of an acquired small RNA-based antiviral response in C. elegans. Cell 147, 1248-1256 (2011).
24. Taft, R. J. et al. Nuclear-localized tiny RNAs are associated with transcription initiation and splice sites in metazoans. Nat. Struct. Mol. Biol 17, 1030-1034 (2010).
25. Shimura, H. et al. A viral satellite RNA induces yellow symptoms on tobacco by targeting a gene involved in chlorophyll biosynthesis using the RNA silencing machinery. PLoS Pathog 7, e1002021 (2011).
26. Smith, N. A., Eamens, A. L. & Wang, M. B. Viral small interfering RNAs target host genes to mediate disease symptoms in plants. PLoS Pathog. 7, e1002022 (2011).
27. Barrière, A. & Félix, M. A. High local genetic diversity and low outcrossing rate in Caenorhabditis elegans natural populations. Curr. Biol 15, 1176-1184 (2005).
28. Byappanahalli, M. N. et al. The population structure of Escherichia coli isolated from subtropical and temperate soils. Sci. Total Envir. 417-418, 273-279 (2012).
29. Zhang, L. et al. Exogenous plant MIR168a specifically targets mammalian LDLRAP1: evidence of cross-kingdom regulation by microRNA. Cell Res 22, 107-126 (2012).
30. Mao, Y. B. et al. Silencing a cotton bollworm P450 monooxygenase gene by plant-mediated RNAi impairs larval tolerance of gossypol. Nat. Biotechnol 25, 1307-1313 (2007).
31. Shan, G. RNA interference as a gene knockdown technique. Int. J. Biochem. Cell Biol. 42, 1243-1251 (2010).
32. Garigan, D. et al. Genetic analysis of tissue aging in Caenorhabditis elegans: a role for heat-shock factor and bacterial proliferation. Genetics 161, 1101-1112 (2002). (Pubitemid 34831435)