Effect of focal ischemia on long noncoding RNAs

Stroke

Volumn 43, Issue 10, 2012, Pages 2800-2802

  Dharap, Ashutosh ^a   Nakka, Venkata Prasuja ^a   Vemuganti, Raghu ^a  

^a UNIVERSITY OF WISCONSIN SCHOOL OF MEDICINE AND PUBLIC HEALTH   (United States)

Author keywords

exon mimicry; noncoding RNA; stroke; transcription factor

Indexed keywords

LONG NONCODING RNA; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG; UNTRANSLATED RNA;

ANIMAL EXPERIMENT; ANIMAL MODEL; ARTICLE; BINDING SITE; BIOINFORMATICS; BRAIN CORTEX; BRAIN ISCHEMIA; DOWN REGULATION; EXON; GENE EXPRESSION; GENE FUNCTION; GENE LOCUS; IN VITRO STUDY; MALE; MICROARRAY ANALYSIS; MIDDLE CEREBRAL ARTERY OCCLUSION; NONHUMAN; OPEN READING FRAME; PRIORITY JOURNAL; PROTEIN SYNTHESIS; PSEUDOGENE; RAT; SEQUENCE HOMOLOGY; UPREGULATION;

ANIMALS; BRAIN ISCHEMIA; CEREBRAL CORTEX; DOWN-REGULATION; GENE EXPRESSION PROFILING; INFARCTION, MIDDLE CEREBRAL ARTERY; MALE; MICROARRAY ANALYSIS; MODELS, ANIMAL; RATS; RATS, INBRED SHR; RNA, LONG UNTRANSLATED; UP-REGULATION;

EID: 84866740972     PISSN: 00392499     EISSN: 15244628     Source Type: Journal    
DOI: 10.1161/STROKEAHA.112.669465     Document Type: Article

References (13)

1. Cheng J, Kapranov P, Drenkow J, Dike S, Brubaker S, Patel S, et al. Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution. Science. 2005;308:1149-1154. (Pubitemid 40696429)
2. Dharap A, Bowen K, Place R, Li LC, Vemuganti R. Transient focal ischemia induces extensive temporal changes in rat cerebral micrornaome. J Cereb Blood Flow Metab. 2009;29:675-687.
3. Dharap A, Nakka VP, Vemuganti R. Altered expression of piwi RNA in the rat brain after transient focal ischemia. Stroke. 2011;42: 1105-1109.
4. Rinn JL, Chang HY. Genome regulation by long noncoding RNAs. Annu Rev Biochem. 2012;81:145-166.
5. Faghihi MA, Modarresi F, Khalil AM, Wood DE, Sahagan BG, Morgan TE, et al. Expression of a noncoding RNA is elevated in Alzheimer's disease and drives rapid feed-forward regulation of beta-secretase. Nat Med. 2008;14:723-730.
6. Calin GA, Liu CG, Ferracin M, Hyslop T, Spizzo R, Sevignani C, et al. Ultraconserved regions encoding ncRNAs are altered in human leukemias and carcinomas. Cancer Cell. 2007;12:215-229. (Pubitemid 47333418)
7. Cartharius K, Frech K, Grote K, Klocke B, Haltmeier M, Klingenhoff A, et al. Matinspector and beyond: promoter analysis based on transcription factor binding sites. Bioinformatics. 2005;21:2933-2942. (Pubitemid 40916416)
8. Lee CM, Robinson LJ, Michel T. Oligomerization of endothelial nitric oxide synthase. Evidence for a dominant negative effect of truncation mutants. J Biol Chem. 1995;270:27403-27406.
9. Stasiv Y, Regulski M, Kuzin B, Tully T, Enikolopov G. The Drosophila nitric-oxide synthase gene (dNOS) encodes a family of proteins that can modulate NOS activity by acting as dominant negative regulators. J Biol Chem. 2001;276:42241-42251.
10. Hirotsune S, Yoshida N, Chen A, Garrett L, Sugiyama F, Takahashi S, et al. An expressed pseudogene regulates the messenger-RNA stability of its homologous coding gene. Nature. 2003;423:91-96. (Pubitemid 36569588)
11. Gupta RA, Shah N, Wang KC, Kim J, Horlings HM, Wong DJ, et al. Long non-coding RNA hotair reprograms chromatin state to promote cancer metastasis. Nature. 2010;464:1071-1076.
12. Huarte M, Guttman M, Feldser D, Garber M, Koziol MJ, Kenzelmann-Broz D, et al. A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response. Cell. 2010;142: 409-419.
13. Khalil AM, Guttman M, Huarte M, Garber M, Raj A, Rivea Morales D, et al. Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression. Proc Natl Acad Sci U S A. 2009;106:11667-11672.