-
1
-
-
0142104045
-
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs
-
Okazaki Y, Furuno M, Kasukawa T, et al. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature 2002;420:563-73.
-
(2002)
Nature
, vol.420
, pp. 563-573
-
-
Okazaki, Y.1
Furuno, M.2
Kasukawa, T.3
-
2
-
-
24644519490
-
The transcriptional landscape of the mammalian genome
-
Carninci P, Kasukawa T, Katayama S, et al. The transcriptional landscape of the mammalian genome. Science 2005; 309:1559-63.
-
(2005)
Science
, vol.309
, pp. 1559-1563
-
-
Carninci, P.1
Kasukawa, T.2
Katayama, S.3
-
3
-
-
21044431735
-
Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution
-
Cheng J, Kapranov P, Drenkow J, et al. Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution. Science 2005;308:1149-54.
-
(2005)
Science
, vol.308
, pp. 1149-1154
-
-
Cheng, J.1
Kapranov, P.2
Drenkow, J.3
-
4
-
-
34250160256
-
RNA maps reveal new RNA classes and a possible function for pervasive transcription
-
Kapranov P, Cheng J, Dike S, et al. RNA maps reveal new RNA classes and a possible function for pervasive transcription. Science 2007;316:1484-8.
-
(2007)
Science
, vol.316
, pp. 1484-1488
-
-
Kapranov, P.1
Cheng, J.2
Dike, S.3
-
5
-
-
22244442468
-
Examples of the complex architecture of the human transcriptome revealed by RACE and high-density tiling arrays
-
Kapranov P, Drenkow J, Cheng J, et al. Examples of the complex architecture of the human transcriptome revealed by RACE and high-density tiling arrays. Genome Res 2005; 15:987-97.
-
(2005)
Genome Res
, vol.15
, pp. 987-997
-
-
Kapranov, P.1
Drenkow, J.2
Cheng, J.3
-
6
-
-
24644472515
-
Antisense transcription in the mammalian transcriptome
-
Katayama S, Tomaru Y, Kasukawa T, et al. Antisense transcription in the mammalian transcriptome. Science 2005;309: 1564-6.
-
(2005)
Science
, vol.309
, pp. 1564-1566
-
-
Katayama, S.1
Tomaru, Y.2
Kasukawa, T.3
-
7
-
-
34250369629
-
Prominent use of distal 50 transcription start sites and discovery of a large number of additional exons in ENCODE regions
-
Denoeud F, Kapranov P, Ucla C, et al. Prominent use of distal 50 transcription start sites and discovery of a large number of additional exons in ENCODE regions. Genome Res 2007;17:746-59.
-
(2007)
Genome Res
, vol.17
, pp. 746-759
-
-
Denoeud, F.1
Kapranov, P.2
Ucla, C.3
-
8
-
-
24644481406
-
A strategy for probing the function of noncoding RNAs finds a repressor of NFAT
-
Willingham AT, Orth AP, Batalov S, et al. A strategy for probing the function of noncoding RNAs finds a repressor of NFAT. Science 2005;309:1570-3.
-
(2005)
Science
, vol.309
, pp. 1570-1573
-
-
Willingham, A.T.1
Orth, A.P.2
Batalov, S.3
-
9
-
-
33749153857
-
Biological function of unannotated transcription during the early development of Drosophila melanogaster
-
Manak JR, Dike S, Sementchenko V, et al. Biological function of unannotated transcription during the early development of Drosophila melanogaster. Nat Genet 2006;38:1151-8.
-
(2006)
Nat Genet
, vol.38
, pp. 1151-1158
-
-
Manak, J.R.1
Dike, S.2
Sementchenko, V.3
-
10
-
-
51149114001
-
A neoplastic gene fusion mimics trans-splicing of RNAs in normal human cells
-
Li H, Wang J, Mor G, et al. A neoplastic gene fusion mimics trans-splicing of RNAs in normal human cells. Science 2008; 321:1357-61.
-
(2008)
Science
, vol.321
, pp. 1357-1361
-
-
Li, H.1
Wang, J.2
Mor, G.3
-
11
-
-
59849091728
-
Short homologous sequences are strongly associated with the generation of chimeric RNAs in eukaryotes
-
Li X, Zhao L, Jiang H, et al. Short homologous sequences are strongly associated with the generation of chimeric RNAs in eukaryotes. J Mol Evol 2009;68:56-65.
-
(2009)
J Mol Evol
, vol.68
, pp. 56-65
-
-
Li, X.1
Zhao, L.2
Jiang, H.3
-
12
-
-
30044431810
-
Transcription-mediated gene fusion in the human genome
-
Akiva P, Toporik A, Edelheit S, et al. Transcription-mediated gene fusion in the human genome. Genome Res 2006;16:30-6.
-
(2006)
Genome Res
, vol.16
, pp. 30-36
-
-
Akiva, P.1
Toporik, A.2
Edelheit, S.3
-
13
-
-
52449116694
-
Tentative mapping of transcription-induced interchromosomal interaction using chimeric EST and mRNA data
-
Unneberg P, Claverie JM. Tentative mapping of transcription-induced interchromosomal interaction using chimeric EST and mRNA data. PLoS ONE 2007;2:e254.
-
(2007)
PLoS ONE
, vol.2
-
-
Unneberg, P.1
Claverie, J.M.2
-
14
-
-
68149176840
-
Chimeric transcript discovery by paired-end transcriptome sequencing
-
Maher CA, Palanisamy N, Brenner JC, et al. Chimeric transcript discovery by paired-end transcriptome sequencing. Proc Natl Acad Sci USA 2009;106:12353-8.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 12353-12358
-
-
Maher, C.A.1
Palanisamy, N.2
Brenner, J.C.3
-
15
-
-
60549115605
-
Post-transcriptional processing generates a diversity of 50-modified long and short RNAs
-
Fejes-Toth K, Sotirova V, Sachidanandam R, et al. Post-transcriptional processing generates a diversity of 50-modified long and short RNAs. Nature 2009;457: 1028-32.
-
(2009)
Nature
, vol.457
, pp. 1028-1032
-
-
Fejes-Toth, K.1
Sotirova, V.2
Sachidanandam, R.3
-
16
-
-
6344281172
-
Identification of mammalian microRNA host genes and transcription units
-
Rodriguez A, Griffiths-Jones S, Ashurst JL, et al. Identification of mammalian microRNA host genes and transcription units. Genome Res 2004;14:1902-10.
-
(2004)
Genome Res
, vol.14
, pp. 1902-1910
-
-
Rodriguez, A.1
Griffiths-Jones, S.2
Ashurst, J.L.3
-
17
-
-
33749377869
-
Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis
-
Berezikov E, van Tetering G, Verheul M, et al. Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis. Genome Res 2006;16:1289-98.
-
(2006)
Genome Res
, vol.16
, pp. 1289-1298
-
-
Berezikov, E.1
van Tetering, G.2
Verheul, M.3
-
18
-
-
33748431061
-
SnoRNP biogenesis meets Pre-mRNA splicing
-
Kiss T. SnoRNP biogenesis meets Pre-mRNA splicing. Mol Cell 2006;23:775-6.
-
(2006)
Mol Cell
, vol.23
, pp. 775-776
-
-
Kiss, T.1
-
19
-
-
34447107760
-
The mirtron pathway generates microRNA-class regulatory RNAs in Drosophila
-
Okamura K, Hagen JW, Duan H, et al. The mirtron pathway generates microRNA-class regulatory RNAs in Drosophila. Cell 2007;130:89-100.
-
(2007)
Cell
, vol.130
, pp. 89-100
-
-
Okamura, K.1
Hagen, J.W.2
Duan, H.3
-
20
-
-
67349157682
-
Tiny RNAs associated with transcription start sites in animals
-
Taft RJ, Glazov EA, Cloonan N, et al. Tiny RNAs associated with transcription start sites in animals. Nat Genet 2009;41:572-8.
-
(2009)
Nat Genet
, vol.41
, pp. 572-578
-
-
Taft, R.J.1
Glazov, E.A.2
Cloonan, N.3
-
21
-
-
67649386471
-
Small RNAs derived from snoRNAs
-
Taft RJ, Glazov EA, Lassmann T, et al. Small RNAs derived from snoRNAs. Rna 2009;15:1233-40.
-
(2009)
Rna
, vol.15
, pp. 1233-1240
-
-
Taft, R.J.1
Glazov, E.A.2
Lassmann, T.3
-
22
-
-
34447097693
-
Intronic microRNA precursors that bypass Drosha processing
-
Ruby JG, Jan CH, Bartel DP. Intronic microRNA precursors that bypass Drosha processing. Nature 2007;448:83-6.
-
(2007)
Nature
, vol.448
, pp. 83-86
-
-
Ruby, J.G.1
Jan, C.H.2
Bartel, D.P.3
-
23
-
-
17644382616
-
Waste not, want not-transcript excess in multicellular eukaryotes
-
Brosius J. Waste not, want not-transcript excess in multicellular eukaryotes. Trends Genet 2005;21:287-8.
-
(2005)
Trends Genet
, vol.21
, pp. 287-288
-
-
Brosius, J.1
-
24
-
-
33846984935
-
Transcriptional noise and the fidelity of initiation by RNA polymerase II
-
Struhl K. Transcriptional noise and the fidelity of initiation by RNA polymerase II. Nat Struct Mol Biol 2007;14:103-5.
-
(2007)
Nat Struct Mol Biol
, vol.14
, pp. 103-105
-
-
Struhl, K.1
-
25
-
-
23944446057
-
Replication and transcription: shaping the landscape of the genome
-
Chakalova L, Debrand E, Mitchell JA, et al. Replication and transcription: shaping the landscape of the genome. Nat Rev Genet 2005;6:669-77.
-
(2005)
Nat Rev Genet
, vol.6
, pp. 669-677
-
-
Chakalova, L.1
Debrand, E.2
Mitchell, J.A.3
-
26
-
-
25444452651
-
A systematic search for new mammalian noncoding RNAs indicates little conserved intergenic transcription
-
Babak T, Blencowe BJ, Hughes TR. A systematic search for new mammalian noncoding RNAs indicates little conserved intergenic transcription. BMC Genomics 2005;6:104.
-
(2005)
BMC Genomics
, vol.6
, pp. 104
-
-
Babak, T.1
Blencowe, B.J.2
Hughes, T.R.3
-
27
-
-
34249740942
-
A new paradigm for developmental biology
-
Mattick JS. A new paradigm for developmental biology. J Exp Biol 2007;210:1526-47.
-
(2007)
J Exp Biol
, vol.210
, pp. 1526-1547
-
-
Mattick, J.S.1
-
29
-
-
50649118350
-
Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation
-
Dinger ME, Amaral PP, Mercer TR, et al. Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation. Genome Res 2008;18:1433-45.
-
(2008)
Genome Res
, vol.18
, pp. 1433-1445
-
-
Dinger, M.E.1
Amaral, P.P.2
Mercer, T.R.3
-
30
-
-
38649114329
-
Specific expression of long noncoding RNAs in the mouse brain
-
Mercer TR, Dinger ME, Sunkin SM, et al. Specific expression of long noncoding RNAs in the mouse brain. Proc Natl Acad Sci USA 2008;105:716-21.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 716-721
-
-
Mercer, T.R.1
Dinger, M.E.2
Sunkin, S.M.3
-
31
-
-
67649160600
-
Genome-wide identification of long noncoding RNAs in CD8+ T cells
-
Pang KC, Dinger ME, Mercer TR, et al. Genome-wide identification of long noncoding RNAs in CD8+ T cells. J Immunol 2009;182:7738-48.
-
(2009)
J Immunol
, vol.182
, pp. 7738-7748
-
-
Pang, K.C.1
Dinger, M.E.2
Mercer, T.R.3
-
32
-
-
65649092633
-
The genetic signatures of noncoding RNAs
-
Mattick JS. The genetic signatures of noncoding RNAs. PLoS Genet 2009;5:e1000459.
-
(2009)
PLoS Genet
, vol.5
-
-
Mattick, J.S.1
-
33
-
-
36549073601
-
The expanding RNA polymerase III transcriptome
-
Dieci G, Fiorino G, Castelnuovo M, et al. The expanding RNA polymerase III transcriptome. Trends Genet 2007;23: 614-22.
-
(2007)
Trends Genet
, vol.23
, pp. 614-622
-
-
Dieci, G.1
Fiorino, G.2
Castelnuovo, M.3
-
34
-
-
18844446950
-
Genomic and proteomic comparisons between bacterial and archaeal genomes and related comparisons with the yeast and fly genomes
-
Karlin S, Brocchieri L, Campbell A, et al. Genomic and proteomic comparisons between bacterial and archaeal genomes and related comparisons with the yeast and fly genomes. Proc Natl Acad Sci USA 2005;102:7309-14.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 7309-7314
-
-
Karlin, S.1
Brocchieri, L.2
Campbell, A.3
-
36
-
-
62249133709
-
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
-
Guttman M, Amit I, Garber M, et al. Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals. Nature 2009;458:223-7.
-
(2009)
Nature
, vol.458
, pp. 223-227
-
-
Guttman, M.1
Amit, I.2
Garber, M.3
-
37
-
-
34547212309
-
The MicroRNA miR-124 promotes neuronal differentiation by triggering brain-specific alternative pre-mRNA splicing
-
Makeyev EV, Zhang J, Carrasco MA, et al. The MicroRNA miR-124 promotes neuronal differentiation by triggering brain-specific alternative pre-mRNA splicing. Mol Cell 2007;27:435-48.
-
(2007)
Mol Cell
, vol.27
, pp. 435-448
-
-
Makeyev, E.V.1
Zhang, J.2
Carrasco, M.A.3
-
38
-
-
34250189924
-
Genome mapping and expression analyses of human intronic noncoding RNAs reveal tissue-specific patterns and enrichment in genes related to regulation of transcription
-
Nakaya HI, Amaral PP, Louro R, et al. Genome mapping and expression analyses of human intronic noncoding RNAs reveal tissue-specific patterns and enrichment in genes related to regulation of transcription. Genome Biol 2007;8:R43.
-
(2007)
Genome Biol
, vol.8
-
-
Nakaya, H.I.1
Amaral, P.P.2
Louro, R.3
-
39
-
-
48749122623
-
Small increases in the level of Sox2 trigger the differentiation of mouse embryonic stem cells
-
Kopp JL, Ormsbee BD, Desler M, et al. Small increases in the level of Sox2 trigger the differentiation of mouse embryonic stem cells. Stem Cells 2008;26:903-11.
-
(2008)
Stem Cells
, vol.26
, pp. 903-911
-
-
Kopp, J.L.1
Ormsbee, B.D.2
Desler, M.3
-
40
-
-
0347357618
-
A microRNA controlling left/right neuronal asymmetry in Caenorhabditis elegans
-
Johnston RJ, Hobert O. A microRNA controlling left/right neuronal asymmetry in Caenorhabditis elegans. Nature 2003; 426:845-9.
-
(2003)
Nature
, vol.426
, pp. 845-849
-
-
Johnston, R.J.1
Hobert, O.2
-
41
-
-
33745336617
-
A germline-specific class of small RNAs binds mammalian Piwi proteins
-
Girard A, Sachidanandam R, Hannon GJ, et al. A germline-specific class of small RNAs binds mammalian Piwi proteins. Nature 2006;442:199-202.
-
(2006)
Nature
, vol.442
, pp. 199-202
-
-
Girard, A.1
Sachidanandam, R.2
Hannon, G.J.3
-
43
-
-
60549106018
-
Genome-wide suppression of aberrant mRNA-like noncoding RNAs by NMD in Arabidopsis
-
Kurihara Y, Matsui A, Hanada K, et al. Genome-wide suppression of aberrant mRNA-like noncoding RNAs by NMD in Arabidopsis. Proc Natl Acad Sci USA 2009;106: 2453-8.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 2453-2458
-
-
Kurihara, Y.1
Matsui, A.2
Hanada, K.3
-
44
-
-
37349038984
-
Genome-wide high-resolution mapping of exosome substrates reveals hidden features in the Arabidopsis transcriptome
-
Chekanova JA, Gregory BD, Reverdatto SV, et al. Genome-wide high-resolution mapping of exosome substrates reveals hidden features in the Arabidopsis transcriptome. Cell 2007;131:1340-53.
-
(2007)
Cell
, vol.131
, pp. 1340-1353
-
-
Chekanova, J.A.1
Gregory, B.D.2
Reverdatto, S.V.3
-
45
-
-
57849123049
-
RNA exosome depletion reveals transcription upstream of active human promoters
-
Preker P, Nielsen J, Kammler S, et al. RNA exosome depletion reveals transcription upstream of active human promoters. Science 2008;322:1851-4.
-
(2008)
Science
, vol.322
, pp. 1851-1854
-
-
Preker, P.1
Nielsen, J.2
Kammler, S.3
-
46
-
-
22444435897
-
Process or perish: quality control in mRNA biogenesis
-
Fasken MB, Corbett AH. Process or perish: quality control in mRNA biogenesis. Nat Struct Mol Biol 2005;12: 482-8.
-
(2005)
Nat Struct Mol Biol
, vol.12
, pp. 482-488
-
-
Fasken, M.B.1
Corbett, A.H.2
-
48
-
-
49949105213
-
The multiple lives of NMD factors: balancing roles in gene and genome regulation
-
Isken O, Maquat LE. The multiple lives of NMD factors: balancing roles in gene and genome regulation. Nat Rev Genet 2008;9:699-712.
-
(2008)
Nat Rev Genet
, vol.9
, pp. 699-712
-
-
Isken, O.1
Maquat, L.E.2
-
49
-
-
20444368036
-
Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase
-
Wyers F, Rougemaille M, Badis G, et al. Cryptic pol II transcripts are degraded by a nuclear quality control path-way involving a new poly(A) polymerase. Cell 2005;121: 725-37.
-
(2005)
Cell
, vol.121
, pp. 725-737
-
-
Wyers, F.1
Rougemaille, M.2
Badis, G.3
-
50
-
-
33644784770
-
Accumulation of unstable promoter-associated transcripts upon loss of the nuclear exosome subunit Rrp6p in Saccharomyces cerevisiae
-
Davis CA, Ares M, Jr. Accumulation of unstable promoter-associated transcripts upon loss of the nuclear exosome subunit Rrp6p in Saccharomyces cerevisiae. Proc Natl Acad Sci USA 2006;103:3262-7.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 3262-3267
-
-
Davis, C.A.1
Ares M., Jr.2
-
51
-
-
12344291073
-
Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments
-
Johnson JM, Edwards S, Shoemaker D, et al. Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments. Trends Genet 2005;21: 93-102.
-
(2005)
Trends Genet
, vol.21
, pp. 93-102
-
-
Johnson, J.M.1
Edwards, S.2
Shoemaker, D.3
-
52
-
-
34249942265
-
A role for noncoding transcription in activation of the yeast PHO5 gene
-
Uhler JP, Hertel C, Svejstrup JQ. A role for noncoding transcription in activation of the yeast PHO5 gene. Proc Natl Acad Sci USA 2007;104:8011-6.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 8011-8016
-
-
Uhler, J.P.1
Hertel, C.2
Svejstrup, J.Q.3
-
53
-
-
36048951040
-
Antisense RNA stabilization induces transcriptional gene silencing via histone deacetylation in S. cerevisiae
-
Camblong J, Iglesias N, Fickentscher C, et al. Antisense RNA stabilization induces transcriptional gene silencing via histone deacetylation in S. cerevisiae. Cell 2007;131: 706-17.
-
(2007)
Cell
, vol.131
, pp. 706-717
-
-
Camblong, J.1
Iglesias, N.2
Fickentscher, C.3
-
54
-
-
67649666831
-
Trans-acting antisense RNAs mediate transcriptional gene cosuppression in S. cerevisiae
-
Camblong J, Beyrouthy N, Guffanti E, et al. Trans-acting antisense RNAs mediate transcriptional gene cosuppression in S. cerevisiae. Genes Dev 2009;23:1534-45.
-
(2009)
Genes Dev
, vol.23
, pp. 1534-1545
-
-
Camblong, J.1
Beyrouthy, N.2
Guffanti, E.3
-
55
-
-
40349116304
-
A cryptic unstable transcript mediates transcriptional trans-silencing of the Ty1 retrotransposon in S. cerevisiae
-
Berretta J, Pinskaya M, Morillon A. A cryptic unstable transcript mediates transcriptional trans-silencing of the Ty1 retrotransposon in S. cerevisiae. Genes Dev 2008;22: 615-26.
-
(2008)
Genes Dev
, vol.22
, pp. 615-626
-
-
Berretta, J.1
Pinskaya, M.2
Morillon, A.3
-
56
-
-
56049126683
-
NMD: multitasking between mRNA surveillance and modulation of gene expression
-
Neu-Yilik G, Kulozik AE. NMD: multitasking between mRNA surveillance and modulation of gene expression. Adv Genet 2008;62:185-243.
-
(2008)
Adv Genet
, vol.62
, pp. 185-243
-
-
Neu-Yilik, G.1
Kulozik, A.E.2
-
57
-
-
33745712580
-
Nuclear mRNA degradation pathway(s) are implicated in Xist regulation and X chromosome inactivation
-
Ciaudo C, Bourdet A, Cohen-Tannoudji M, et al. Nuclear mRNA degradation pathway(s) are implicated in Xist regulation and X chromosome inactivation. PLoS Genet 2006;2:e94.
-
(2006)
PLoS Genet
, vol.2
-
-
Ciaudo, C.1
Bourdet, A.2
Cohen-Tannoudji, M.3
-
58
-
-
46649093597
-
Induced ncRNAs allosterically modify RNA-binding proteins in cis to inhibit transcription
-
Wang X, Arai S, Song X, et al. Induced ncRNAs allosterically modify RNA-binding proteins in cis to inhibit transcription. Nature 2008;454:126-30.
-
(2008)
Nature
, vol.454
, pp. 126-130
-
-
Wang, X.1
Arai, S.2
Song, X.3
-
59
-
-
38049155825
-
Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA
-
Yu W, Gius D, Onyango P, et al. Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA. Nature 2008;451:202-6.
-
(2008)
Nature
, vol.451
, pp. 202-206
-
-
Yu, W.1
Gius, D.2
Onyango, P.3
-
60
-
-
33646923128
-
Tethering RITS to a nascent transcript initiates RNAi- and heterochromatin- dependent gene silencing
-
Buhler M, Verdel A, Moazed D. Tethering RITS to a nascent transcript initiates RNAi-and heterochromatin-dependent gene silencing. Cell 2006;125:873-886.
-
(2006)
Cell
, vol.125
, pp. 873-886
-
-
Buhler, M.1
Verdel, A.2
Moazed, D.3
-
61
-
-
10944248935
-
Two RNAi complexes, RITS and RDRC, physically interact and localize to noncoding centromeric RNAs
-
Motamedi MR, Verdel A, Colmenares SU, et al. Two RNAi complexes, RITS and RDRC, physically interact and localize to noncoding centromeric RNAs. Cell 2004; 119:789-802.
-
(2004)
Cell
, vol.119
, pp. 789-802
-
-
Motamedi, M.R.1
Verdel, A.2
Colmenares, S.U.3
-
62
-
-
34547626629
-
Promoter-associated RNA is required for RNA-directed transcriptional gene silencing in human cells
-
Han J, Kim D, Morris KV. Promoter-associated RNA is required for RNA-directed transcriptional gene silencing in human cells. Proc Natl Acad Sci USA 2007;104: 12422-7.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 12422-12427
-
-
Han, J.1
Kim, D.2
Morris, K.V.3
-
63
-
-
55549098872
-
Stepwise chromatin remodelling by a cascade of transcription initiation of non-coding RNAs
-
Hirota K, Miyoshi T, Kugou K, et al. Stepwise chromatin remodelling by a cascade of transcription initiation of non-coding RNAs. Nature 2008;456:130-4.
-
(2008)
Nature
, vol.456
, pp. 130-134
-
-
Hirota, K.1
Miyoshi, T.2
Kugou, K.3
-
65
-
-
2942560254
-
Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene
-
Martens JA, Laprade L, Winston F. Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene. Nature 2004;429:571-4.
-
(2004)
Nature
, vol.429
, pp. 571-574
-
-
Martens, J.A.1
Laprade, L.2
Winston, F.3
-
66
-
-
34548555700
-
Transcriptional interference: an unexpected layer of complexity in gene regulation
-
Mazo A, Hodgson JW, Petruk S, et al. Transcriptional interference: an unexpected layer of complexity in gene regulation. J Cell Sci 2007;120:2755-61.
-
(2007)
J Cell Sci
, vol.120
, pp. 2755-2761
-
-
Mazo, A.1
Hodgson, J.W.2
Petruk, S.3
-
67
-
-
34248162440
-
Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs
-
Ponjavic J, Ponting CP, Lunter G. Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs. Genome Res 2007;17:556-65.
-
(2007)
Genome Res
, vol.17
, pp. 556-565
-
-
Ponjavic, J.1
Ponting, C.P.2
Lunter, G.3
-
68
-
-
34249026300
-
High-resolution profiling of histone methylations in the human genome
-
Barski A, Cuddapah S, Cui K, et al. High-resolution profiling of histone methylations in the human genome. Cell 2007;129:823-37.
-
(2007)
Cell
, vol.129
, pp. 823-837
-
-
Barski, A.1
Cuddapah, S.2
Cui, K.3
-
69
-
-
33847076849
-
Chromatin modifications and their function
-
Kouzarides T. Chromatin modifications and their function. Cell 2007;128:693-705.
-
(2007)
Cell
, vol.128
, pp. 693-705
-
-
Kouzarides, T.1
-
70
-
-
0030826364
-
Intergenic transcription and transinduction of the human beta-globin locus
-
Ashe HL, Monks J, Wijgerde M, et al. Intergenic transcription and transinduction of the human beta-globin locus. Genes Dev 1997;11:2494-509.
-
(1997)
Genes Dev
, vol.11
, pp. 2494-2509
-
-
Ashe, H.L.1
Monks, J.2
Wijgerde, M.3
-
71
-
-
58149506281
-
Transcription is required for establishment of germline methylation marks at imprinted genes
-
Chotalia M, Smallwood SA, Ruf N, et al. Transcription is required for establishment of germline methylation marks at imprinted genes. Genes Dev 2009;23:105-17.
-
(2009)
Genes Dev
, vol.23
, pp. 105-117
-
-
Chotalia, M.1
Smallwood, S.A.2
Ruf, N.3
-
72
-
-
34249099120
-
Silencing by imprinted noncoding RNAs: is transcription the answer?
-
Pauler FM, Koerner MV, Barlow DP. Silencing by imprinted noncoding RNAs: is transcription the answer? Trends Genet 2007;23:284-92.
-
(2007)
Trends Genet
, vol.23
, pp. 284-292
-
-
Pauler, F.M.1
Koerner, M.V.2
Barlow, D.P.3
-
73
-
-
56549111129
-
The air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin
-
Nagano T, Mitchell JA, Sanz LA, et al. The air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin. Science 2008;322:1717-20.
-
(2008)
Science
, vol.322
, pp. 1717-1720
-
-
Nagano, T.1
Mitchell, J.A.2
Sanz, L.A.3
-
74
-
-
33846930357
-
Repression of the human dihydrofolate reductase gene by a non-coding interfering transcript
-
Martianov I, Ramadass A, Serra Barros A, et al. Repression of the human dihydrofolate reductase gene by a non-coding interfering transcript. Nature 2007;445:666-70.
-
(2007)
Nature
, vol.445
, pp. 666-670
-
-
Martianov, I.1
Ramadass, A.2
Serra Barros, A.3
-
76
-
-
33745590704
-
Thousands of corresponding human and mouse genomic regions unalignable in primary sequence contain common RNA structure
-
Torarinsson E, Sawera M, Havgaard JH, et al. Thousands of corresponding human and mouse genomic regions unalignable in primary sequence contain common RNA structure. Genome Res 2006;16:885-9.
-
(2006)
Genome Res
, vol.16
, pp. 885-889
-
-
Torarinsson, E.1
Sawera, M.2
Havgaard, J.H.3
-
77
-
-
39049142999
-
Comparative genomics beyond sequence-based alignments: RNA structures in the ENCODE regions
-
Torarinsson E, Yao Z, Wiklund ED, et al. Comparative genomics beyond sequence-based alignments: RNA structures in the ENCODE regions. Genome Res 2008;18: 242-51.
-
(2008)
Genome Res
, vol.18
, pp. 242-251
-
-
Torarinsson, E.1
Yao, Z.2
Wiklund, E.D.3
-
78
-
-
27944464131
-
Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome
-
Washietl S, Hofacker IL, Lukasser M, et al. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. Nat Biotechnol 2005;23:1383-90.
-
(2005)
Nat Biotechnol
, vol.23
, pp. 1383-1390
-
-
Washietl, S.1
Hofacker, I.L.2
Lukasser, M.3
-
79
-
-
67650921949
-
Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression
-
Khalil AM, Guttman M, Huarte M, et al. Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression. Proc Natl Acad Sci USA 2009;106:11667-72.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 11667-11672
-
-
Khalil, A.M.1
Guttman, M.2
Huarte, M.3
-
80
-
-
2542542256
-
Ultraconserved elements in the human genome
-
Bejerano G, Pheasant M, Makunin I, et al. Ultraconserved elements in the human genome. Science 2004;304:1321-5.
-
(2004)
Science
, vol.304
, pp. 1321-1325
-
-
Bejerano, G.1
Pheasant, M.2
Makunin, I.3
-
81
-
-
38949097100
-
Large-scale appearance of ultraconserved elements in tetrapod genomes and slowdown of the molecular clock
-
Stephen S, Pheasant M, Makunin IV, et al. Large-scale appearance of ultraconserved elements in tetrapod genomes and slowdown of the molecular clock. Mol Biol Evol 2008; 25:402-8.
-
(2008)
Mol Biol Evol
, vol.25
, pp. 402-408
-
-
Stephen, S.1
Pheasant, M.2
Makunin, I.V.3
-
82
-
-
34548230885
-
Ultraconserved regions encoding ncRNAs are altered in human leukemias and carcinomas
-
Calin GA, Liu CG, Ferracin M, et al. Ultraconserved regions encoding ncRNAs are altered in human leukemias and carcinomas. Cancer Cell 2007;12:215-29.
-
(2007)
Cancer Cell
, vol.12
, pp. 215-229
-
-
Calin, G.A.1
Liu, C.G.2
Ferracin, M.3
-
83
-
-
29444457713
-
Rapid evolution of non-coding RNAs: lack of conservation does not mean lack of function
-
Pang KC, Frith MC, Mattick JS. Rapid evolution of non-coding RNAs: lack of conservation does not mean lack of function. Trends Genet 2006;22:1-5.
-
(2006)
Trends Genet
, vol.22
, pp. 1-5
-
-
Pang, K.C.1
Frith, M.C.2
Mattick, J.S.3
-
84
-
-
67650022866
-
Conserved introns reveal novel transcripts in Drosophila melanogaster
-
Hiller M, Findeiss S, Lein S, et al. Conserved introns reveal novel transcripts in Drosophila melanogaster. Genome Res 2009;19:1289-300.
-
(2009)
Genome Res
, vol.19
, pp. 1289-1300
-
-
Hiller, M.1
Findeiss, S.2
Lein, S.3
-
85
-
-
34547135988
-
Comparative analysis of structured RNAs in S. cerevisiae indicates a multitude of different functions
-
Steigele S, Huber W, Stocsits C, et al. Comparative analysis of structured RNAs in S. cerevisiae indicates a multitude of different functions. BMC Biol 2007;5:25.
-
(2007)
BMC Biol
, vol.5
, pp. 25
-
-
Steigele, S.1
Huber, W.2
Stocsits, C.3
-
86
-
-
46149104377
-
Evo-devo and an expanding evolutionary synthesis: a genetic theory of morphological evolution
-
Carroll SB. Evo-devo and an expanding evolutionary synthesis: a genetic theory of morphological evolution. Cell 2008;134:25-36.
-
(2008)
Cell
, vol.134
, pp. 25-36
-
-
Carroll, S.B.1
-
87
-
-
34548432104
-
Raising the estimate of functional human sequences
-
Pheasant M, Mattick JS. Raising the estimate of functional human sequences. Genome Res 2007;17:1245-53.
-
(2007)
Genome Res
, vol.17
, pp. 1245-1253
-
-
Pheasant, M.1
Mattick, J.S.2
-
88
-
-
33645833857
-
Conservation of RET regulatory function from human to zebrafish without sequence similarity
-
Fisher S, Grice EA, Vinton RM, et al. Conservation of RET regulatory function from human to zebrafish without sequence similarity. Science 2006;312:276-9.
-
(2006)
Science
, vol.312
, pp. 276-279
-
-
Fisher, S.1
Grice, E.A.2
Vinton, R.M.3
-
89
-
-
33744824906
-
Evolutionary turnover of mammalian transcription start sites
-
Frith MC, Ponjavic J, Fredman D, et al. Evolutionary turnover of mammalian transcription start sites. Genome Res 2006;16:713-22.
-
(2006)
Genome Res
, vol.16
, pp. 713-722
-
-
Frith, M.C.1
Ponjavic, J.2
Fredman, D.3
-
90
-
-
4744370251
-
Evidence for turnover of functional noncoding DNA in mammalian genome evolution
-
Smith NG, Brandstrom M, Ellegren H. Evidence for turnover of functional noncoding DNA in mammalian genome evolution. Genomics 2004;84:806-13.
-
(2004)
Genomics
, vol.84
, pp. 806-813
-
-
Smith, N.G.1
Brandstrom, M.2
Ellegren, H.3
-
91
-
-
33646489947
-
Heterotachy in mammalian promoter evolution
-
Taylor MS, Kai C, Kawai J, et al. Heterotachy in mammalian promoter evolution. PLoS Genet 2006;2:e30.
-
(2006)
PLoS Genet
, vol.2
-
-
Taylor, M.S.1
Kai, C.2
Kawai, J.3
-
92
-
-
33750428182
-
Forces shaping the fastest evolving regions in the human genome
-
Pollard KS, Salama SR, King B, et al. Forces shaping the fastest evolving regions in the human genome. PLoS Genet 2006;2:e168.
-
(2006)
PLoS Genet
, vol.2
-
-
Pollard, K.S.1
Salama, S.R.2
King, B.3
-
93
-
-
33748675254
-
An RNA gene expressed during cortical development evolved rapidly in humans
-
Pollard KS, Salama SR, Lambert N, et al. An RNA gene expressed during cortical development evolved rapidly in humans. Nature 2006;443:167-72.
-
(2006)
Nature
, vol.443
, pp. 167-172
-
-
Pollard, K.S.1
Salama, S.R.2
Lambert, N.3
-
95
-
-
0037075032
-
The non-coding Air RNA is required for silencing autosomal imprinted genes
-
Sleutels F, Zwart R, Barlow DP. The non-coding Air RNA is required for silencing autosomal imprinted genes. Nature 2002;415:810-3.
-
(2002)
Nature
, vol.415
, pp. 810-813
-
-
Sleutels, F.1
Zwart, R.2
Barlow, D.P.3
-
96
-
-
66049147797
-
Comparative analysis of Alu repeats in primate genomes
-
Liu GE, Alkan C, Jiang L, et al. Comparative analysis of Alu repeats in primate genomes. Genome Res 2009;19:876-85.
-
(2009)
Genome Res
, vol.19
, pp. 876-885
-
-
Liu, G.E.1
Alkan, C.2
Jiang, L.3
-
97
-
-
33845645988
-
A novel class of developmentally regulated noncoding RNAs in Leishmania
-
Dumas C, Chow C, Muller M, et al. A novel class of developmentally regulated noncoding RNAs in Leishmania. Eukaryot Cell 2006;5:2033-46.
-
(2006)
Eukaryot Cell
, vol.5
, pp. 2033-2046
-
-
Dumas, C.1
Chow, C.2
Muller, M.3
-
98
-
-
4344560867
-
Novel non-coding RNAs in Dictyostelium discoideum and their expression during development
-
Aspegren A, Hinas A, Larsson P, et al. Novel non-coding RNAs in Dictyostelium discoideum and their expression during development. Nucleic Acids Res 2004;32:4646-56.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 4646-4656
-
-
Aspegren, A.1
Hinas, A.2
Larsson, P.3
-
99
-
-
33847371621
-
Identification of new noncoding RNAs in Listeria monocytogenes and prediction of mRNA targets
-
Mandin P, Repoila F, Vergassola M, et al. Identification of new noncoding RNAs in Listeria monocytogenes and prediction of mRNA targets. Nucleic Acids Res 2007;35: 962-74.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 962-974
-
-
Mandin, P.1
Repoila, F.2
Vergassola, M.3
-
100
-
-
34250735582
-
RNAi-dependent H3K27 methylation is required for heterochromatin formation and DNA elimination in Tetrahymena
-
Liu Y, Taverna SD, Muratore TL, et al. RNAi-dependent H3K27 methylation is required for heterochromatin formation and DNA elimination in Tetrahymena. Genes Dev 2007;21:1530-45.
-
(2007)
Genes Dev
, vol.21
, pp. 1530-1545
-
-
Liu, Y.1
Taverna, S.D.2
Muratore, T.L.3
-
101
-
-
38049186458
-
RNA-mediated epigenetic programming of a genome-rearrangement pathway
-
Nowacki M, Vijayan V, Zhou Y, et al. RNA-mediated epigenetic programming of a genome-rearrangement pathway. Nature 2008;451:153-8.
-
(2008)
Nature
, vol.451
, pp. 153-158
-
-
Nowacki, M.1
Vijayan, V.2
Zhou, Y.3
-
102
-
-
70349323106
-
Transposable elements and an epigenetic basis for punctuated equilibria
-
Zeh DW, Zeh JA, Ishida Y. Transposable elements and an epigenetic basis for punctuated equilibria. Bioessays 2009;31: 715-26.
-
(2009)
Bioessays
, vol.31
, pp. 715-726
-
-
Zeh, D.W.1
Zeh, J.A.2
Ishida, Y.3
-
103
-
-
70349339300
-
Transposable elements: powerful facilitators of evolution
-
Oliver KR, Greene WK. Transposable elements: powerful facilitators of evolution. Bioessays 2009;31:703-14.
-
(2009)
Bioessays
, vol.31
, pp. 703-714
-
-
Oliver, K.R.1
Greene, W.K.2
-
104
-
-
69449085281
-
Analysis of the platypus genome suggests a transposon origin for mammalian imprinting
-
Pask AJ, Papenfuss AT, Ager EI, et al. Analysis of the platypus genome suggests a transposon origin for mammalian imprinting. Genome Biol 2009;10:R1.
-
(2009)
Genome Biol
, vol.10
-
-
Pask, A.J.1
Papenfuss, A.T.2
Ager, E.I.3
-
105
-
-
67149086996
-
Extensive demethylation of repetitive elements during seed development underlies gene imprinting
-
Gehring M, Bubb KL, Henikoff S. Extensive demethylation of repetitive elements during seed development underlies gene imprinting. Science 2009;324:1447-51.
-
(2009)
Science
, vol.324
, pp. 1447-1451
-
-
Gehring, M.1
Bubb, K.L.2
Henikoff, S.3
-
106
-
-
0141615769
-
Conserved fragments of transposable elements in intergenic regions: evidence for widespread recruitment of MIR- and L2-derived sequences within the mouse and human genomes
-
Silva JC, Shabalina SA, Harris DG, et al. Conserved fragments of transposable elements in intergenic regions: evidence for widespread recruitment of MIR- and L2-derived sequences within the mouse and human genomes. Genet Res 2003;82:1-18.
-
(2003)
Genet Res
, vol.82
, pp. 1-18
-
-
Silva, J.C.1
Shabalina, S.A.2
Harris, D.G.3
-
107
-
-
0028804572
-
MIRs are classic, tRNA-derived SINEs that amplified before the mammalian radiation
-
Smit AF, Riggs AD. MIRs are classic, tRNA-derived SINEs that amplified before the mammalian radiation. Nucleic Acids Res 1995;23:98-102.
-
(1995)
Nucleic Acids Res
, vol.23
, pp. 98-102
-
-
Smit, A.F.1
Riggs, A.D.2
-
108
-
-
0019223585
-
Ubiquitous, interspersed repeated sequences in mammalian genomes
-
Jelinek WR, Toomey TP, Leinwand L, et al. Ubiquitous, interspersed repeated sequences in mammalian genomes. Proc Natl Acad Sci USA 1980;77:1398-402.
-
(1980)
Proc Natl Acad Sci USA
, vol.77
, pp. 1398-1402
-
-
Jelinek, W.R.1
Toomey, T.P.2
Leinwand, L.3
-
109
-
-
7244245762
-
Finishing the euchromatic sequence of the human genome
-
Consortium IHGS
-
Consortium IHGS. Finishing the euchromatic sequence of the human genome. Nature 2004;431:931-45.
-
(2004)
Nature
, vol.431
, pp. 931-945
-
-
-
110
-
-
38549146025
-
Conserved eukaryotic transposable elements and the evolution of gene regulation
-
Jurka J. Conserved eukaryotic transposable elements and the evolution of gene regulation. Cell Mol Life Sci 2008;65: 201-4.
-
(2008)
Cell Mol Life Sci
, vol.65
, pp. 201-204
-
-
Jurka, J.1
-
111
-
-
67349173665
-
The regulated retrotransposon transcriptome of mammalian cells
-
Faulkner GJ, Kimura Y, Daub CO, et al. The regulated retrotransposon transcriptome of mammalian cells. Nat Genet 2009;41:563-71.
-
(2009)
Nat Genet
, vol.41
, pp. 563-571
-
-
Faulkner, G.J.1
Kimura, Y.2
Daub, C.O.3
-
112
-
-
39549103642
-
Human Alu RNA is a modular transacting repressor of mRNA transcription during heat shock
-
Mariner PD, Walters RD, Espinoza CA, et al. Human Alu RNA is a modular transacting repressor of mRNA transcription during heat shock. Mol Cell 2008;29:499-509.
-
(2008)
Mol Cell
, vol.29
, pp. 499-509
-
-
Mariner, P.D.1
Walters, R.D.2
Espinoza, C.A.3
-
113
-
-
34447647842
-
Useful 'junk': Alu RNAs in the human transcriptome
-
Hasler J, Samuelsson T, Strub K. Useful 'junk': Alu RNAs in the human transcriptome. Cell Mol Life Sci 2007;64: 1793-800.
-
(2007)
Cell Mol Life Sci
, vol.64
, pp. 1793-1800
-
-
Hasler, J.1
Samuelsson, T.2
Strub, K.3
-
114
-
-
35848962284
-
Transcription and RNAi in hetero-chromatic gene silencing
-
Buhler M, Moazed D. Transcription and RNAi in hetero-chromatic gene silencing. Nat Struct Mol Biol 2007;14: 1041-8.
-
(2007)
Nat Struct Mol Biol
, vol.14
, pp. 1041-1048
-
-
Buhler, M.1
Moazed, D.2
-
115
-
-
59249100073
-
LINE retrotransposon RNA is an essential structural and functional epigenetic component of a core neocentromeric chromatin
-
Chueh AC, Northrop EL, Brettingham-Moore KH, et al. LINE retrotransposon RNA is an essential structural and functional epigenetic component of a core neocentromeric chromatin. PLoS Genet 2009;5:e1000354.
-
(2009)
PLoS Genet
, vol.5
-
-
Chueh, A.C.1
Northrop, E.L.2
Brettingham-Moore, K.H.3
-
116
-
-
33745593721
-
Generation of neuronal variability and complexity
-
Muotri AR, Gage FH. Generation of neuronal variability and complexity. Nature 2006;441:1087-93.
-
(2006)
Nature
, vol.441
, pp. 1087-1093
-
-
Muotri, A.R.1
Gage, F.H.2
-
117
-
-
34447515727
-
Developmentally regulated activation of a SINE B2 repeat as a domain boundary in organogenesis
-
Lunyak VV, Prefontaine GG, Nunez E, et al. Developmentally regulated activation of a SINE B2 repeat as a domain boundary in organogenesis. Science 2007;317: 248-51.
-
(2007)
Science
, vol.317
, pp. 248-251
-
-
Lunyak, V.V.1
Prefontaine, G.G.2
Nunez, E.3
-
118
-
-
56949091456
-
Noncoding RNA in development
-
Amaral PP, Mattick JS. Noncoding RNA in development. Mamm Genome 2008;19:454-92.
-
(2008)
Mamm Genome
, vol.19
, pp. 454-492
-
-
Amaral, P.P.1
Mattick, J.S.2
-
119
-
-
5044251591
-
Retrotransposons regulate host genes in mouse oocytes and preimplantation embryos
-
Peaston AE, Evsikov AV, Graber JH, et al. Retrotransposons regulate host genes in mouse oocytes and preimplantation embryos. Dev Cell 2004;7:597-606.
-
(2004)
Dev Cell
, vol.7
, pp. 597-606
-
-
Peaston, A.E.1
Evsikov, A.V.2
Graber, J.H.3
-
120
-
-
0034596989
-
Transcriptional silencing and promoter methylation triggered by double-stranded RNA
-
Mette MF, Aufsatz W, van der Winden J, et al. Transcriptional silencing and promoter methylation triggered by double-stranded RNA. Embo J 2000;19:5194-201.
-
(2000)
Embo J
, vol.19
, pp. 5194-5201
-
-
Mette, M.F.1
Aufsatz, W.2
van der Winden, J.3
-
121
-
-
0036184188
-
RNAi related mechanisms affect both transcriptional and posttranscriptional transgene silencing in Drosophila
-
Pal-Bhadra M, Bhadra U, Birchler JA. RNAi related mechanisms affect both transcriptional and posttranscriptional transgene silencing in Drosophila. Mol Cell 2002;9: 315-27.
-
(2002)
Mol Cell
, vol.9
, pp. 315-327
-
-
Pal-Bhadra, M.1
Bhadra, U.2
Birchler, J.A.3
-
122
-
-
33645528966
-
Post-transcriptional small RNA pathways in plants: mechanisms and regulations
-
Vaucheret H. Post-transcriptional small RNA pathways in plants: mechanisms and regulations. Genes Dev 2006;20: 759-71.
-
(2006)
Genes Dev
, vol.20
, pp. 759-771
-
-
Vaucheret, H.1
-
124
-
-
0942279615
-
Heterochromatic silencing and HP1 localization in Drosophila are dependent on the RNAi machinery
-
Pal-Bhadra M, Leibovitch BA, Gandhi SG, et al. Heterochromatic silencing and HP1 localization in Drosophila are dependent on the RNAi machinery. Science 2004;303:669-72.
-
(2004)
Science
, vol.303
, pp. 669-672
-
-
Pal-Bhadra, M.1
Leibovitch, B.A.2
Gandhi, S.G.3
-
125
-
-
55449132231
-
A position effect on the heritability of epigenetic silencing
-
Singh J, Freeling M, Lisch D. A position effect on the heritability of epigenetic silencing. PLoS Genet 2008;4: e1000216.
-
(2008)
PLoS Genet
, vol.4
-
-
Singh, J.1
Freeling, M.2
Lisch, D.3
-
126
-
-
57149104113
-
An epigenetic role for maternally inherited piRNAs in transposon silencing
-
Brennecke J, Malone CD, Aravin AA, et al. An epigenetic role for maternally inherited piRNAs in transposon silencing. Science 2008;322:1387-92.
-
(2008)
Science
, vol.322
, pp. 1387-1392
-
-
Brennecke, J.1
Malone, C.D.2
Aravin, A.A.3
-
127
-
-
33847032545
-
Noncoding RNAs and intranuclear positioning in monoallelic gene expression
-
Yang PK, Kuroda MI. Noncoding RNAs and intranuclear positioning in monoallelic gene expression. Cell 2007;128: 777-86.
-
(2007)
Cell
, vol.128
, pp. 777-786
-
-
Yang, P.K.1
Kuroda, M.I.2
-
128
-
-
38349100549
-
Epigenetic events in mammalian germ-cell development: reprogramming and beyond
-
Sasaki H, Matsui Y. Epigenetic events in mammalian germ-cell development: reprogramming and beyond. Nat Rev Genet 2008;9:129-40.
-
(2008)
Nat Rev Genet
, vol.9
, pp. 129-140
-
-
Sasaki, H.1
Matsui, Y.2
-
129
-
-
33847031363
-
Paramutation: from maize to mice
-
Chandler VL. Paramutation: from maize to mice. Cell 2007; 128:641-5.
-
(2007)
Cell
, vol.128
, pp. 641-645
-
-
Chandler, V.L.1
-
130
-
-
42549122872
-
Induction by microRNAs of hereditary epigenetic modifications (paramutation) in the mouse
-
France: Colmar
-
Cuzin F. Induction by microRNAs of hereditary epigenetic modifications (paramutation) in the mouse. Proceedings of the 5th Colmar Symposium: The New RNA Frontiers. France: Colmar, 2007.
-
(2007)
Proceedings of the 5th Colmar Symposium: The New RNA Frontiers
-
-
Cuzin, F.1
-
132
-
-
33751277900
-
Identification of a novel non-coding RNA, MIAT, that confers risk of myocardial infarction
-
Ishii N, Ozaki K, Sato H, et al. Identification of a novel non-coding RNA, MIAT, that confers risk of myocardial infarction. J Hum Genet 2006;51:1087-99.
-
(2006)
J Hum Genet
, vol.51
, pp. 1087-1099
-
-
Ishii, N.1
Ozaki, K.2
Sato, H.3
-
133
-
-
34248547495
-
Characterization of a germ-line deletion, including the entire INK4/ARF locus, in a melanoma-neural system tumor family: identification of ANRIL, an antisense noncoding RNA whose expression coclusters with ARF
-
Pasmant E, Laurendeau I, Heron D, et al. Characterization of a germ-line deletion, including the entire INK4/ARF locus, in a melanoma-neural system tumor family: identification of ANRIL, an antisense noncoding RNA whose expression coclusters with ARF. Cancer Res 2007;67:3963-9.
-
(2007)
Cancer Res
, vol.67
, pp. 3963-3969
-
-
Pasmant, E.1
Laurendeau, I.2
Heron, D.3
-
134
-
-
5444230036
-
SNPs in the promoter of a B cell-specific antisense transcript, SAS-ZFAT, determine susceptibility to autoimmune thyroid disease
-
Shirasawa S, Harada H, Furugaki K, et al. SNPs in the promoter of a B cell-specific antisense transcript, SAS-ZFAT, determine susceptibility to autoimmune thyroid disease. Hum Mol Genet 2004;13:2221-31.
-
(2004)
Hum Mol Genet
, vol.13
, pp. 2221-2231
-
-
Shirasawa, S.1
Harada, H.2
Furugaki, K.3
-
135
-
-
68149182666
-
Balanced gene regulation by an embryonic brain ncRNA is critical for adult hippocampal GABA circuitry
-
Bond AM, Vangompel MJ, Sametsky EA, et al. Balanced gene regulation by an embryonic brain ncRNA is critical for adult hippocampal GABA circuitry. Nat Neurosci 2009;12: 1020-7.
-
(2009)
Nat Neurosci
, vol.12
, pp. 1020-1027
-
-
Bond, A.M.1
Vangompel, M.J.2
Sametsky, E.A.3
-
136
-
-
40649111338
-
Non-coding RNAs, epigenetics and complexity
-
Costa FF. Non-coding RNAs, epigenetics and complexity. Gene 2008;410:9-17.
-
(2008)
Gene
, vol.410
, pp. 9-17
-
-
Costa, F.F.1
-
137
-
-
67650690613
-
Genome-wide allele- and strand-specific expression profiling
-
Gagneur J, Sinha H, Perocchi F, et al. Genome-wide allele- and strand-specific expression profiling. Mol Syst Biol 2009;5: 274.
-
(2009)
Mol Syst Biol
, vol.5
, pp. 274
-
-
Gagneur, J.1
Sinha, H.2
Perocchi, F.3
-
138
-
-
41349116135
-
The eukaryotic genome as an RNA machine
-
Amaral PP, Dinger ME, Mercer TR, et al. The eukaryotic genome as an RNA machine. Science 2008;319:1787-9.
-
(2008)
Science
, vol.319
, pp. 1787-1789
-
-
Amaral, P.P.1
Dinger, M.E.2
Mercer, T.R.3
-
139
-
-
61849133411
-
Long intronic noncoding RNA transcription: expression noise or expression choice?
-
Louro R, Smirnova AS, Verjovski-Almeida S. Long intronic noncoding RNA transcription: expression noise or expression choice? Genomics 2009;93:291-8.
-
(2009)
Genomics
, vol.93
, pp. 291-298
-
-
Louro, R.1
Smirnova, A.S.2
Verjovski-Almeida, S.3
-
140
-
-
0347135948
-
An abundance of bidirectional promoters in the human genome
-
Trinklein ND, Aldred SF, Hartman SJ, et al. An abundance of bidirectional promoters in the human genome. Genome Res 2004;14:62-6.
-
(2004)
Genome Res
, vol.14
, pp. 62-66
-
-
Trinklein, N.D.1
Aldred, S.F.2
Hartman, S.J.3
-
141
-
-
17244364714
-
Identification of putative noncoding polyadenylated transcripts in Drosophila melanogaster
-
Tupy JL, Bailey AM, Dailey G, et al. Identification of putative noncoding polyadenylated transcripts in Drosophila melanogaster. Proc Natl Acad Sci USA 2005;102:5495-500.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 5495-5500
-
-
Tupy, J.L.1
Bailey, A.M.2
Dailey, G.3
-
142
-
-
34250729138
-
Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs
-
Rinn JL, Kertesz M, Wang JK, et al. Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs. Cell 2007;129:1311-23.
-
(2007)
Cell
, vol.129
, pp. 1311-1323
-
-
Rinn, J.L.1
Kertesz, M.2
Wang, J.K.3
-
143
-
-
33646551818
-
Analysis of a new homozygous deletion in the tumor suppressor region at 3p12.3 reveals two novel intronic noncoding RNA genes
-
Angeloni D, ter Elst A, Wei MH, et al. Analysis of a new homozygous deletion in the tumor suppressor region at 3p12.3 reveals two novel intronic noncoding RNA genes. Genes Chromosomes Cancer 2006;45:676-91.
-
(2006)
Genes Chromosomes Cancer
, vol.45
, pp. 676-691
-
-
Angeloni, D.1
ter Elst, A.2
Wei, M.H.3
-
144
-
-
40349085705
-
Noncoding human Y RNAs are overexpressed in tumours and required for cell proliferation
-
Christov CP, Trivier E, Krude T. Noncoding human Y RNAs are overexpressed in tumours and required for cell proliferation. BrJ Cancer 2008;98:981-8.
-
(2008)
BrJ Cancer
, vol.98
, pp. 981-988
-
-
Christov, C.P.1
Trivier, E.2
Krude, T.3
-
145
-
-
0344429906
-
MALAT-1, a novel noncoding RNA, and thymosin beta4 predict metastasis and survival in early-stage non-small cell lung cancer
-
Ji P, Diederichs S, Wang W, et al. MALAT-1, a novel noncoding RNA, and thymosin beta4 predict metastasis and survival in early-stage non-small cell lung cancer. Oncogene 2003;22:8031-41.
-
(2003)
Oncogene
, vol.22
, pp. 8031-8041
-
-
Ji, P.1
Diederichs, S.2
Wang, W.3
-
146
-
-
1542380523
-
The spino-cerebellar ataxia 8 noncoding RNA causes neurodegeneration and associates with staufen in Drosophila
-
Mutsuddi M, Marshall CM, Benzow KA, et al. The spino-cerebellar ataxia 8 noncoding RNA causes neurodegeneration and associates with staufen in Drosophila. Curr Biol 2004;14:302-8.
-
(2004)
Curr Biol
, vol.14
, pp. 302-308
-
-
Mutsuddi, M.1
Marshall, C.M.2
Benzow, K.A.3
-
147
-
-
39749096054
-
Long, abundantly expressed non-coding transcripts are altered in cancer
-
Perez DS, Hoage TR, Pritchett JR, et al. Long, abundantly expressed non-coding transcripts are altered in cancer. Hum Mol Genet 2008;17:642-55.
-
(2008)
Hum Mol Genet
, vol.17
, pp. 642-655
-
-
Perez, D.S.1
Hoage, T.R.2
Pritchett, J.R.3
-
148
-
-
4444364003
-
Antisense intronic non-coding RNA levels correlate to the degree of tumor differentiation in prostate cancer
-
Reis EM, Nakaya HI, Louro R, et al. Antisense intronic non-coding RNA levels correlate to the degree of tumor differentiation in prostate cancer. Oncogene 2004;23: 6684-92.
-
(2004)
Oncogene
, vol.23
, pp. 6684-6692
-
-
Reis, E.M.1
Nakaya, H.I.2
Louro, R.3
-
149
-
-
20144387232
-
Large-scale transcriptome analyses reveal new genetic marker candidates of head, neck, and thyroid cancer
-
Reis EM, Ojopi EP, Alberto FL, et al. Large-scale transcriptome analyses reveal new genetic marker candidates of head, neck, and thyroid cancer. Cancer Res 2005;65:1693-9.
-
(2005)
Cancer Res
, vol.65
, pp. 1693-1699
-
-
Reis, E.M.1
Ojopi, E.P.2
Alberto, F.L.3
-
150
-
-
21244447111
-
Identification and characterization of a novel, psoriasis susceptibility-related noncoding RNA gene, PRINS
-
Sonkoly E, Bata-Csorgo Z, Pivarcsi A, et al. Identification and characterization of a novel, psoriasis susceptibility-related noncoding RNA gene, PRINS. J Biol Chem 2005; 280:24159-67.
-
(2005)
J Biol Chem
, vol.280
, pp. 24159-24167
-
-
Sonkoly, E.1
Bata-Csorgo, Z.2
Pivarcsi, A.3
-
151
-
-
0033585496
-
aHIF: a natural antisense transcript overexpressed in human renal cancer and during hypoxia
-
Thrash-Bingham CA, Tartof KD. aHIF: a natural antisense transcript overexpressed in human renal cancer and during hypoxia. J Natl Cancer Inst 1999;91:143-51.
-
(1999)
J Natl Cancer Inst
, vol.91
, pp. 143-151
-
-
Thrash-Bingham, C.A.1
Tartof, K.D.2
-
152
-
-
63849156246
-
A myelopoiesis-associated regulatory intergenic noncoding RNA transcript within the human HOXA cluster
-
Zhang X, Lian Z, Padden C, et al. A myelopoiesis-associated regulatory intergenic noncoding RNA transcript within the human HOXA cluster. Blood 2009;113:2526-34.
-
(2009)
Blood
, vol.113
, pp. 2526-2534
-
-
Zhang, X.1
Lian, Z.2
Padden, C.3
-
153
-
-
10744226888
-
Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs
-
Cawley S, Bekiranov S, Ng HH, et al. Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs. Cell 2004;116:499-509.
-
(2004)
Cell
, vol.116
, pp. 499-509
-
-
Cawley, S.1
Bekiranov, S.2
Ng, H.H.3
-
154
-
-
0035912773
-
Endogenous Msx1 antisense transcript: in vivo and in vitro evidences, structure, and potential involvement in skeleton development in mammals
-
Blin-Wakkach C, Lezot F, Ghoul-Mazgar S, et al. Endogenous Msx1 antisense transcript: in vivo and in vitro evidences, structure, and potential involvement in skeleton development in mammals. Proc Natl Acad Sci USA 2001;98:7336-41.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 7336-7341
-
-
Blin-Wakkach, C.1
Lezot, F.2
Ghoul-Mazgar, S.3
-
155
-
-
33646708738
-
Expression of trunk Hox genes in the centipede Strigamia maritima: sense and anti-sense transcripts
-
Brena C, Chipman AD, Minelli A, et al. Expression of trunk Hox genes in the centipede Strigamia maritima: sense and anti-sense transcripts. Evol Dev 2006;8:252-65.
-
(2006)
Evol Dev
, vol.8
, pp. 252-265
-
-
Brena, C.1
Chipman, A.D.2
Minelli, A.3
-
156
-
-
29244485152
-
Identification and expression analysis of putative mRNA-like non-coding RNA in Drosophila
-
Inagaki S, Numata K, Kondo T, et al. Identification and expression analysis of putative mRNA-like non-coding RNA in Drosophila. Genes Cells 2005;10:1163-73.
-
(2005)
Genes Cells
, vol.10
, pp. 1163-1173
-
-
Inagaki, S.1
Numata, K.2
Kondo, T.3
-
157
-
-
2942617210
-
Developmental regulation of EVF-1, a novel non-coding RNA transcribed upstream of the mouse Dlx6 gene
-
Kohtz JD, Fishell G. Developmental regulation of EVF-1, a novel non-coding RNA transcribed upstream of the mouse Dlx6 gene. Gene Expr Patterns 2004;4:407-12.
-
(2004)
Gene Expr Patterns
, vol.4
, pp. 407-412
-
-
Kohtz, J.D.1
Fishell, G.2
-
158
-
-
60149092541
-
The long non-coding RNA Kcnq1ot1 organises a lineage-specific nuclear domain for epigenetic gene silencing
-
Redrup L, Branco MR, Perdeaux ER, et al. The long non-coding RNA Kcnq1ot1 organises a lineage-specific nuclear domain for epigenetic gene silencing. Development 2009;136: 525-30.
-
(2009)
Development
, vol.136
, pp. 525-530
-
-
Redrup, L.1
Branco, M.R.2
Perdeaux, E.R.3
-
159
-
-
34548291568
-
The mRNA-like non-coding RNA Gomafu constitutes a novel nuclear domain in a subset of neurons
-
Sone M, Hayashi T, Tarui H, et al. The mRNA-like non-coding RNA Gomafu constitutes a novel nuclear domain in a subset of neurons. J Cell Sci 2007;120:2498-506.
-
(2007)
J Cell Sci
, vol.120
, pp. 2498-2506
-
-
Sone, M.1
Hayashi, T.2
Tarui, H.3
-
160
-
-
61849113891
-
MEN varepsilon/beta nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspeckles
-
Sunwoo H, Dinger ME, Wilusz JE, et al. MEN varepsilon/beta nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspeckles. Genome Res 2009;19:347-59.
-
(2009)
Genome Res
, vol.19
, pp. 347-359
-
-
Sunwoo, H.1
Dinger, M.E.2
Wilusz, J.E.3
-
161
-
-
15744387853
-
The noncoding RNA taurine upregulated gene 1 is required for differentiation of the murine retina
-
Young TL, Matsuda T, Cepko CL. The noncoding RNA taurine upregulated gene 1 is required for differentiation of the murine retina. Curr Biol 2005;15:501-12.
-
(2005)
Curr Biol
, vol.15
, pp. 501-512
-
-
Young, T.L.1
Matsuda, T.2
Cepko, C.L.3
-
162
-
-
30044434769
-
Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome
-
Ravasi T, Suzuki H, Pang KC, et al. Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome. Genome Res 2006;16:11-9.
-
(2006)
Genome Res
, vol.16
, pp. 11-19
-
-
Ravasi, T.1
Suzuki, H.2
Pang, K.C.3
-
163
-
-
34247881766
-
Identification and characterization of human non-coding RNAs with tissue-specific expression
-
Sasaki YT, Sano M, Ideue T, et al. Identification and characterization of human non-coding RNAs with tissue-specific expression. Biochem Biophys Res Commun 2007;357: 991-6.
-
(2007)
Biochem Biophys Res Commun
, vol.357
, pp. 991-996
-
-
Sasaki, Y.T.1
Sano, M.2
Ideue, T.3
-
164
-
-
20444460289
-
MicroRNA expression profiles classify human cancers
-
Lu J, Getz G, Miska EA, et al. MicroRNA expression profiles classify human cancers. Nature 2005;435:834-8.
-
(2005)
Nature
, vol.435
, pp. 834-838
-
-
Lu, J.1
Getz, G.2
Miska, E.A.3
-
165
-
-
33646474262
-
Clusters of internally primed transcripts reveal novel long noncoding RNAs
-
Furuno M, Pang KC, Ninomiya N, et al. Clusters of internally primed transcripts reveal novel long noncoding RNAs. PLoS Genet 2006;2:e37.
-
(2006)
PLoS Genet
, vol.2
-
-
Furuno, M.1
Pang, K.C.2
Ninomiya, N.3
-
166
-
-
56549114545
-
RNA-dependent recruitment of the origin recognition complex
-
Norseen J, Thomae A, Sridharan V, et al. RNA-dependent recruitment of the origin recognition complex. Embo J 2008; 27:3024-35.
-
(2008)
Embo J
, vol.27
, pp. 3024-3035
-
-
Norseen, J.1
Thomae, A.2
Sridharan, V.3
-
167
-
-
35348927529
-
Noncoding transcription controls downstream promoters to regulate T-cell receptor alpha recombination
-
Abarrategui I, Krangel MS. Noncoding transcription controls downstream promoters to regulate T-cell receptor alpha recombination. Embo J 2007;26:4380-90.
-
(2007)
Embo J
, vol.26
, pp. 4380-4390
-
-
Abarrategui, I.1
Krangel, M.S.2
-
169
-
-
0036796374
-
Having it both ways: transcription factors that bind DNA and RNA
-
Cassiday LA, Maher LJ, 3rd. Having it both ways: transcription factors that bind DNA and RNA. Nucleic Acids Res 2002;30:4118-26.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 4118-4126
-
-
Cassiday, L.A.1
Maher L.J., Jr.2
-
170
-
-
0030310896
-
Identification of a mouse orthologue of the human ras-GAP-SH3-domain binding protein and structural confirmation that these proteins contain an RNA recognition motif
-
Kennedy D, Wood SA, Ramsdale T, et al. Identification of a mouse orthologue of the human ras-GAP-SH3-domain binding protein and structural confirmation that these proteins contain an RNA recognition motif. Biomed Pept Proteins Nucleic Acids 1996;2:93-9.
-
(1996)
Biomed Pept Proteins Nucleic Acids
, vol.2
, pp. 93-99
-
-
Kennedy, D.1
Wood, S.A.2
Ramsdale, T.3
-
171
-
-
0033588309
-
Epigenetic spreading of the Drosophila dosage compensation complex from roX RNA genes into flanking chromatin
-
Kelley RL, Meller VH, Gordadze PR, et al. Epigenetic spreading of the Drosophila dosage compensation complex from roX RNA genes into flanking chromatin. Cell 1999; 98:513-22.
-
(1999)
Cell
, vol.98
, pp. 513-522
-
-
Kelley, R.L.1
Meller, V.H.2
Gordadze, P.R.3
-
172
-
-
43149109529
-
RNA is an integral component of chromatin that contributes to its structural organization
-
Rodriguez-Campos A, Azorin F. RNA is an integral component of chromatin that contributes to its structural organization. PLoS ONE 2007;2:e1182.
-
(2007)
PLoS ONE
, vol.2
-
-
Rodriguez-Campos, A.1
Azorin, F.2
-
173
-
-
33644514069
-
Noncoding RNAs of trithorax response elements recruit Drosophila Ash1 to Ultrabithorax
-
Sanchez-Elsner T, Gou D, Kremmer E, et al. Noncoding RNAs of trithorax response elements recruit Drosophila Ash1 to Ultrabithorax. Science 2006;311:1118-23.
-
(2006)
Science
, vol.311
, pp. 1118-1123
-
-
Sanchez-Elsner, T.1
Gou, D.2
Kremmer, E.3
-
174
-
-
0036403836
-
Unraveling the organization of the internal nuclear matrix: RNA-dependent anchoring of NuMA to a lamin scaffold
-
Barboro P, D'Arrigo C, Diaspro A, et al. Unraveling the organization of the internal nuclear matrix: RNA-dependent anchoring of NuMA to a lamin scaffold. Exp Cell Res 2002;279:202-18.
-
(2002)
Exp Cell Res
, vol.279
, pp. 202-218
-
-
Barboro, P.1
D'Arrigo, C.2
Diaspro, A.3
-
175
-
-
62549117314
-
An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles
-
Clemson CM, Hutchinson JN, Sara SA, et al. An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles. Mol Cell 2009;33: 717-26.
-
(2009)
Mol Cell
, vol.33
, pp. 717-726
-
-
Clemson, C.M.1
Hutchinson, J.N.2
Sara, S.A.3
-
176
-
-
62449319486
-
MENepsilon/beta noncoding RNAs are essential for structural integrity of nuclear paraspeckles
-
Sasaki YT, Ideue T, Sano M, et al. MENepsilon/beta noncoding RNAs are essential for structural integrity of nuclear paraspeckles. Proc Natl Acad Sci USA 2009;106: 2525-30.
-
(2009)
, vol.106
, pp. 2525-2530
-
-
Sasaki, Y.T.1
Ideue, T.2
Sano, M.3
-
178
-
-
60149089144
-
Regulatory RNAs in bacteria
-
Waters LS, Storz G. Regulatory RNAs in bacteria. Cell 2009;136:615-28.
-
(2009)
Cell
, vol.136
, pp. 615-628
-
-
Waters, L.S.1
Storz, G.2
-
179
-
-
66149130975
-
Metatranscriptomics reveals unique microbial small RNAs in the ocean's water column
-
Shi Y, Tyson GW, DeLong EF. Metatranscriptomics reveals unique microbial small RNAs in the ocean's water column. Nature 2009;459:266-9.
-
(2009)
Nature
, vol.459
, pp. 266-269
-
-
Shi, Y.1
Tyson, G.W.2
DeLong, E.F.3
-
180
-
-
33846074755
-
RNAdb 2.0-an expanded database of mammalian non-coding RNAs
-
Pang KC, Stephen S, Dinger ME, et al. RNAdb 2.0-an expanded database of mammalian non-coding RNAs. Nucleic Acids Res 2007;35:D178-82.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Pang, K.C.1
Stephen, S.2
Dinger, M.E.3
-
181
-
-
57149107578
-
Differentiating protein-coding and noncoding RNA: challenges and ambiguities
-
Dinger ME, Pang KC, Mercer TR, et al. Differentiating protein-coding and noncoding RNA: challenges and ambiguities. PLoS Comput Biol 2008;4:e1000176.
-
(2008)
PLoS Comput Biol
, vol.4
-
-
Dinger, M.E.1
Pang, K.C.2
Mercer, T.R.3
-
182
-
-
0025012640
-
The product of the H19 gene may function as an RNA
-
Brannan CI, Dees EC, Ingram RS, et al. The product of the H19 gene may function as an RNA. Mol Cell Biol 1990;10: 28-36.
-
(1990)
Mol Cell Biol
, vol.10
, pp. 28-36
-
-
Brannan, C.I.1
Dees, E.C.2
Ingram, R.S.3
-
183
-
-
33645454706
-
The H19 gene: regulation and function of a non-coding RNA
-
Gabory A, Ripoche MA, Yoshimizu T, et al. The H19 gene: regulation and function of a non-coding RNA. Cytogenet Genome Res 2006;113:188-93.
-
(2006)
Cytogenet Genome Res
, vol.113
, pp. 188-193
-
-
Gabory, A.1
Ripoche, M.A.2
Yoshimizu, T.3
-
184
-
-
34250330777
-
What is a gene, post-ENCODE? History and updated definition
-
Gerstein MB, Bruce C, Rozowsky JS, et al. What is a gene, post-ENCODE? History and updated definition. Genome Res 2007;17:669-81.
-
(2007)
Genome Res
, vol.17
, pp. 669-681
-
-
Gerstein, M.B.1
Bruce, C.2
Rozowsky, J.S.3
-
185
-
-
34250305146
-
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
-
Birney E, Stamatoyannopoulos JA, Dutta A, et al. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 2007;447:799-816.
-
(2007)
Nature
, vol.447
, pp. 799-816
-
-
Birney, E.1
Stamatoyannopoulos, J.A.2
Dutta, A.3
-
186
-
-
44349130233
-
Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes
-
Watanabe T, Totoki Y, Toyoda A, et al. Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes. Nature 2008;453:539-43.
-
(2008)
Nature
, vol.453
, pp. 539-543
-
-
Watanabe, T.1
Totoki, Y.2
Toyoda, A.3
-
187
-
-
0141867857
-
Challenging the dogma: the hidden layer of non-protein-coding RNAs in complex organisms
-
Mattick JS. Challenging the dogma: the hidden layer of non-protein-coding RNAs in complex organisms. Bioessays 2003;25:930-9.
-
(2003)
Bioessays
, vol.25
, pp. 930-939
-
-
Mattick, J.S.1
-
188
-
-
33744805985
-
Genome-wide analysis of mammalian promoter architecture and evolution
-
Carninci P, Sandelin A, Lenhard B, et al. Genome-wide analysis of mammalian promoter architecture and evolution. Nat Genet 2006;38:626-35.
-
(2006)
Nat Genet
, vol.38
, pp. 626-635
-
-
Carninci, P.1
Sandelin, A.2
Lenhard, B.3
-
189
-
-
34250308428
-
Origin of phenotypes: genes and transcripts
-
Gingeras TR. Origin of phenotypes: genes and transcripts. Genome Res 2007;17:682-90.
-
(2007)
Genome Res
, vol.17
, pp. 682-690
-
-
Gingeras, T.R.1
-
190
-
-
44449176159
-
What is a gene? An updated operational definition
-
Pesole G. What is a gene? An updated operational definition. Gene 2008;417:1-4.
-
(2008)
Gene
, vol.417
, pp. 1-4
-
-
Pesole, G.1
-
191
-
-
34250334695
-
Fusion transcripts and transcribed retrotransposed loci discovered through comprehensive transcriptome analysis using Paired-End diTags (PETs)
-
Ruan Y, Ooi HS, Choo SW, et al. Fusion transcripts and transcribed retrotransposed loci discovered through comprehensive transcriptome analysis using Paired-End diTags (PETs). Genome Res 2007;17:828-38.
-
(2007)
Genome Res
, vol.17
, pp. 828-838
-
-
Ruan, Y.1
Ooi, H.S.2
Choo, S.W.3
-
192
-
-
0042810677
-
EST analyses predict the existence of a population of chimeric microRNA precursor-mRNA transcripts expressed in normal human and mouse tissues
-
Smalheiser NR. EST analyses predict the existence of a population of chimeric microRNA precursor-mRNA transcripts expressed in normal human and mouse tissues. Genome Biol 2003;4:403.
-
(2003)
Genome Biol
, vol.4
, pp. 403
-
-
Smalheiser, N.R.1
-
193
-
-
17644392110
-
High frequency trans-splicing in a cell line producing spliced and polyadenylated RNA polymerase I transcripts from an rDNA-myc chimeric gene
-
Chen C, Fossar N, Weil D, et al. High frequency trans-splicing in a cell line producing spliced and poly-adenylated RNA polymerase I transcripts from an rDNA-myc chimeric gene. Nucleic Acids Res 2005;33: 2332-42.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 2332-2342
-
-
Chen, C.1
Fossar, N.2
Weil, D.3
-
194
-
-
0035195942
-
Non-coding RNAs: the architects of eukaryotic complexity
-
Mattick JS. Non-coding RNAs: the architects of eukaryotic complexity. EMBO Rep 2001;2:986-91.
-
(2001)
EMBO Rep
, vol.2
, pp. 986-991
-
-
Mattick, J.S.1
-
195
-
-
33847698971
-
The relationship between non-protein-coding DNA and eukaryotic complexity
-
Taft RJ, Pheasant M, Mattick JS. The relationship between non-protein-coding DNA and eukaryotic complexity. Bioessays 2007;29:288-99.
-
(2007)
Bioessays
, vol.29
, pp. 288-299
-
-
Taft, R.J.1
Pheasant, M.2
Mattick, J.S.3
-
196
-
-
34249724360
-
Noncoding RNAs and RNA editing in brain development, functional diversification, and neurological disease
-
Mehler MF, Mattick JS. Noncoding RNAs and RNA editing in brain development, functional diversification, and neurological disease. Physiol Rev 2007;87: 799-823.
-
(2007)
Physiol Rev
, vol.87
, pp. 799-823
-
-
Mehler, M.F.1
Mattick, J.S.2
-
197
-
-
67349260751
-
Non-coding RNAs and new opportunities for the private sector
-
Costa FF. Non-coding RNAs and new opportunities for the private sector. Drug Discov Today 2009;14:446-52.
-
(2009)
Drug Discov Today
, vol.14
, pp. 446-452
-
-
Costa, F.F.1
|