-
1
-
-
0033782994
-
Aminoacyl-tRNA synthesis
-
Ibba, M. and Soll, D. (2000) Aminoacyl-tRNA synthesis Annu. Rev. Biochem. 69, 617-650
-
(2000)
Annu. Rev. Biochem.
, vol.69
, pp. 617-650
-
-
Ibba, M.1
Soll, D.2
-
2
-
-
84855892823
-
Quality control in aminoacyl-tRNA synthesis its role in translational fidelity
-
Yadavalli, S. S. and Ibba, M. (2012) Quality control in aminoacyl-tRNA synthesis its role in translational fidelity Adv. Protein Chem. Struct. Biol. 86, 1-43
-
(2012)
Adv. Protein Chem. Struct. Biol.
, vol.86
, pp. 1-43
-
-
Yadavalli, S.S.1
Ibba, M.2
-
3
-
-
0034053846
-
Aminoacyl-tRNA synthetases, the genetic code, and the evolutionary process
-
Woese, C. R., Olsen, G. J., Ibba, M., and Soll, D. (2000) Aminoacyl-tRNA synthetases, the genetic code, and the evolutionary process Microbiol. Mol. Biol. Rev. 64, 202-236
-
(2000)
Microbiol. Mol. Biol. Rev.
, vol.64
, pp. 202-236
-
-
Woese, C.R.1
Olsen, G.J.2
Ibba, M.3
Soll, D.4
-
4
-
-
0346848759
-
On the evolution of structure in aminoacyl-tRNA synthetases
-
O'Donoghue, P. and Luthey-Schulten, Z. (2003) On the evolution of structure in aminoacyl-tRNA synthetases Microbiol. Mol. Biol. Rev. 67, 550-573
-
(2003)
Microbiol. Mol. Biol. Rev.
, vol.67
, pp. 550-573
-
-
O'Donoghue, P.1
Luthey-Schulten, Z.2
-
5
-
-
20144380970
-
RNA-dependent cysteine biosynthesis in archaea
-
Sauerwald, A., Zhu, W., Major, T. A., Roy, H., Palioura, S., Jahn, D., Whitman, W. B., Yates, J. R., III, Ibba, M., and Soll, D. (2005) RNA-dependent cysteine biosynthesis in archaea Science 307, 1969-1972
-
(2005)
Science
, vol.307
, pp. 1969-1972
-
-
Sauerwald, A.1
Zhu, W.2
Major, T.A.3
Roy, H.4
Palioura, S.5
Jahn, D.6
Whitman, W.B.7
Yates Iii, J.R.8
Ibba, M.9
Soll, D.10
-
6
-
-
0027674975
-
The aminoacyl-tRNA synthetase family: Modules at work
-
Delarue, M. and Moras, D. (1993) The aminoacyl-tRNA synthetase family: Modules at work BioEssays 15, 675-687
-
(1993)
BioEssays
, vol.15
, pp. 675-687
-
-
Delarue, M.1
Moras, D.2
-
7
-
-
0037166006
-
Pyrrolysine encoded by UAG in Archaea: Charging of a UAG-decoding specialized tRNA
-
Srinivasan, G., James, C. M., and Krzycki, J. A. (2002) Pyrrolysine encoded by UAG in Archaea: Charging of a UAG-decoding specialized tRNA Science 296, 1459-1462
-
(2002)
Science
, vol.296
, pp. 1459-1462
-
-
Srinivasan, G.1
James, C.M.2
Krzycki, J.A.3
-
8
-
-
0025158208
-
Partition of tRNA synthetases into two classes based on mutually exclusive sets of sequence motifs
-
Eriani, G., Delarue, M., Poch, O., Gangloff, J., and Moras, D. (1990) Partition of tRNA synthetases into two classes based on mutually exclusive sets of sequence motifs Nature 347, 203-206
-
(1990)
Nature
, vol.347
, pp. 203-206
-
-
Eriani, G.1
Delarue, M.2
Poch, O.3
Gangloff, J.4
Moras, D.5
-
9
-
-
71549152215
-
Processivity of translation in the eukaryote cell: Role of aminoacyl-tRNA synthetases
-
Mirande, M. (2010) Processivity of translation in the eukaryote cell: Role of aminoacyl-tRNA synthetases FEBS Lett. 584, 443-447
-
(2010)
FEBS Lett.
, vol.584
, pp. 443-447
-
-
Mirande, M.1
-
10
-
-
39549104965
-
An important role for the multienzyme aminoacyl-tRNA synthetase complex in mammalian translation and cell growth
-
Kyriacou, S. V. and Deutscher, M. P. (2008) An important role for the multienzyme aminoacyl-tRNA synthetase complex in mammalian translation and cell growth Mol. Cell 29, 419-427
-
(2008)
Mol. Cell
, vol.29
, pp. 419-427
-
-
Kyriacou, S.V.1
Deutscher, M.P.2
-
11
-
-
0025876244
-
Channeling of aminoacyl-tRNA for protein synthesis in vivo
-
Negrutskii, B. S. and Deutscher, M. P. (1991) Channeling of aminoacyl-tRNA for protein synthesis in vivo Proc. Natl. Acad. Sci. U.S.A. 88, 4991-4995
-
(1991)
Proc. Natl. Acad. Sci. U.S.A.
, vol.88
, pp. 4991-4995
-
-
Negrutskii, B.S.1
Deutscher, M.P.2
-
12
-
-
0028273032
-
The multienzyme complex containing nine aminoacyl-tRNA synthetases is ubiquitous from Drosophila to mammals
-
Kerjan, P., Cerini, C., Semeriva, M., and Mirande, M. (1994) The multienzyme complex containing nine aminoacyl-tRNA synthetases is ubiquitous from Drosophila to mammals Biochim. Biophys. Acta 1199, 293-297
-
(1994)
Biochim. Biophys. Acta
, vol.1199
, pp. 293-297
-
-
Kerjan, P.1
Cerini, C.2
Semeriva, M.3
Mirande, M.4
-
13
-
-
77956095201
-
New functions of aminoacyl-tRNA synthetases beyond translation
-
Guo, M., Yang, X. L., and Schimmel, P. (2010) New functions of aminoacyl-tRNA synthetases beyond translation Nat. Rev. Mol. Cell Biol. 11, 668-674
-
(2010)
Nat. Rev. Mol. Cell Biol.
, vol.11
, pp. 668-674
-
-
Guo, M.1
Yang, X.L.2
Schimmel, P.3
-
14
-
-
71549128376
-
Functional expansion of human tRNA synthetases achieved by structural inventions
-
Guo, M., Schimmel, P., and Yang, X. L. (2010) Functional expansion of human tRNA synthetases achieved by structural inventions FEBS Lett. 584, 434-442
-
(2010)
FEBS Lett.
, vol.584
, pp. 434-442
-
-
Guo, M.1
Schimmel, P.2
Yang, X.L.3
-
15
-
-
0035937134
-
Glutamine-dependent antiapoptotic interaction of human glutaminyl-tRNA synthetase with apoptosis signal-regulating kinase 1
-
Ko, Y. G., Kim, E. Y., Kim, T., Park, H., Park, H. S., Choi, E. J., and Kim, S. (2001) Glutamine-dependent antiapoptotic interaction of human glutaminyl-tRNA synthetase with apoptosis signal-regulating kinase 1 J. Biol. Chem. 276, 6030-6036
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 6030-6036
-
-
Ko, Y.G.1
Kim, E.Y.2
Kim, T.3
Park, H.4
Park, H.S.5
Choi, E.J.6
Kim, S.7
-
16
-
-
84862777407
-
Leucyl-tRNA synthetase is an intracellular leucine sensor for the mTORC1-signaling pathway
-
Han, J. M., Jeong, S. J., Park, M. C., Kim, G., Kwon, N. H., Kim, H. K., Ha, S. H., Ryu, S. H., and Kim, S. (2012) Leucyl-tRNA synthetase is an intracellular leucine sensor for the mTORC1-signaling pathway Cell 149, 410-424
-
(2012)
Cell
, vol.149
, pp. 410-424
-
-
Han, J.M.1
Jeong, S.J.2
Park, M.C.3
Kim, G.4
Kwon, N.H.5
Kim, H.K.6
Ha, S.H.7
Ryu, S.H.8
Kim, S.9
-
17
-
-
80053152058
-
Aminoacyl-tRNA synthetases and tumorigenesis: More than housekeeping
-
Kim, S., You, S., and Hwang, D. (2011) Aminoacyl-tRNA synthetases and tumorigenesis: More than housekeeping Nat. Rev. Cancer 11, 708-718
-
(2011)
Nat. Rev. Cancer
, vol.11
, pp. 708-718
-
-
Kim, S.1
You, S.2
Hwang, D.3
-
18
-
-
49649110170
-
Aminoacyl tRNA synthetases and their connections to disease
-
Park, S. G., Schimmel, P., and Kim, S. (2008) Aminoacyl tRNA synthetases and their connections to disease Proc. Natl. Acad. Sci. U.S.A. 105, 11043-11049
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 11043-11049
-
-
Park, S.G.1
Schimmel, P.2
Kim, S.3
-
19
-
-
33847716306
-
Kinetic quality control of anticodon recognition by a eukaryotic aminoacyl-tRNA synthetase
-
Liu, C., Gamper, H., Shtivelband, S., Hauenstein, S., Perona, J. J., and Hou, Y. M. (2007) Kinetic quality control of anticodon recognition by a eukaryotic aminoacyl-tRNA synthetase J. Mol. Biol. 367, 1063-1078
-
(2007)
J. Mol. Biol.
, vol.367
, pp. 1063-1078
-
-
Liu, C.1
Gamper, H.2
Shtivelband, S.3
Hauenstein, S.4
Perona, J.J.5
Hou, Y.M.6
-
20
-
-
0035960596
-
The appended C-domain of human methionyl-tRNA synthetase has a tRNA-sequestering function
-
Kaminska, M., Shalak, V., and Mirande, M. (2001) The appended C-domain of human methionyl-tRNA synthetase has a tRNA-sequestering function Biochemistry 40, 14309-14316
-
(2001)
Biochemistry
, vol.40
, pp. 14309-14316
-
-
Kaminska, M.1
Shalak, V.2
Mirande, M.3
-
21
-
-
77953643054
-
Adding new chemistries to the genetic code
-
Liu, C. C. and Schultz, P. G. (2010) Adding new chemistries to the genetic code Annu. Rev. Biochem. 79, 413-444
-
(2010)
Annu. Rev. Biochem.
, vol.79
, pp. 413-444
-
-
Liu, C.C.1
Schultz, P.G.2
-
22
-
-
0019953944
-
Tyrosyl-tRNA synthetase forms a mononucleotide-binding fold
-
Bhat, T. N., Blow, D. M., Brick, P., and Nyborg, J. (1982) Tyrosyl-tRNA synthetase forms a mononucleotide-binding fold J. Mol. Biol. 158, 699-709
-
(1982)
J. Mol. Biol.
, vol.158
, pp. 699-709
-
-
Bhat, T.N.1
Blow, D.M.2
Brick, P.3
Nyborg, J.4
-
23
-
-
0024406896
-
Structure of tyrosyl-tRNA synthetase refined at 2.3 Å resolution. Interaction of the enzyme with the tyrosyl adenylate intermediate
-
Brick, P., Bhat, T. N., and Blow, D. M. (1989) Structure of tyrosyl-tRNA synthetase refined at 2.3 Å resolution. Interaction of the enzyme with the tyrosyl adenylate intermediate J. Mol. Biol. 208, 83-98
-
(1989)
J. Mol. Biol.
, vol.208
, pp. 83-98
-
-
Brick, P.1
Bhat, T.N.2
Blow, D.M.3
-
24
-
-
0017121672
-
The crystal structure of tyrosyl-transfer RNA synthetase at 2-7 Å resolution
-
Irwin, M. J., Nyborg, J., Reid, B. R., and Blow, D. M. (1976) The crystal structure of tyrosyl-transfer RNA synthetase at 2-7 Å resolution J. Mol. Biol. 105, 577-586
-
(1976)
J. Mol. Biol.
, vol.105
, pp. 577-586
-
-
Irwin, M.J.1
Nyborg, J.2
Reid, B.R.3
Blow, D.M.4
-
25
-
-
0029643793
-
Tryptophanyl-tRNA synthetase crystal structure reveals an unexpected homology to tyrosyl-tRNA synthetase
-
Doublie, S., Bricogne, G., Gilmore, C., and Carter, C. W., Jr. (1995) Tryptophanyl-tRNA synthetase crystal structure reveals an unexpected homology to tyrosyl-tRNA synthetase Structure 3, 17-31
-
(1995)
Structure
, vol.3
, pp. 17-31
-
-
Doublie, S.1
Bricogne, G.2
Gilmore, C.3
Carter Jr., C.W.4
-
26
-
-
0029130510
-
Residues in a class i tRNA synthetase which determine selectivity of amino acid recognition in the context of tRNA
-
Schmidt, E. and Schimmel, P. (1995) Residues in a class I tRNA synthetase which determine selectivity of amino acid recognition in the context of tRNA Biochemistry 34, 11204-11210
-
(1995)
Biochemistry
, vol.34
, pp. 11204-11210
-
-
Schmidt, E.1
Schimmel, P.2
-
27
-
-
0032830481
-
Evolution of aminoacyl-tRNA synthetases: Analysis of unique domain architectures and phylogenetic trees reveals a complex history of horizontal gene transfer events
-
Wolf, Y. I., Aravind, L., Grishin, N. V., and Koonin, E. V. (1999) Evolution of aminoacyl-tRNA synthetases: Analysis of unique domain architectures and phylogenetic trees reveals a complex history of horizontal gene transfer events Genome Res. 9, 689-710
-
(1999)
Genome Res.
, vol.9
, pp. 689-710
-
-
Wolf, Y.I.1
Aravind, L.2
Grishin, N.V.3
Koonin, E.V.4
-
28
-
-
0032528941
-
Modular evolution of the Glx-tRNA synthetase family: Rooting of the evolutionary tree between the bacteria and archaea/eukarya branches
-
Siatecka, M., Rozek, M., Barciszewski, J., and Mirande, M. (1998) Modular evolution of the Glx-tRNA synthetase family: Rooting of the evolutionary tree between the bacteria and archaea/eukarya branches Eur. J. Biochem. 256, 80-87
-
(1998)
Eur. J. Biochem.
, vol.256
, pp. 80-87
-
-
Siatecka, M.1
Rozek, M.2
Barciszewski, J.3
Mirande, M.4
-
29
-
-
0030707877
-
A euryarchaeal lysyl-tRNA synthetase: Resemblance to class i synthetases
-
Ibba, M., Morgan, S., Curnow, A. W., Pridmore, D. R., Vothknecht, U. C., Gardner, W., Lin, W., Woese, C. R., and Soll, D. (1997) A euryarchaeal lysyl-tRNA synthetase: Resemblance to class I synthetases Science 278, 1119-1122
-
(1997)
Science
, vol.278
, pp. 1119-1122
-
-
Ibba, M.1
Morgan, S.2
Curnow, A.W.3
Pridmore, D.R.4
Vothknecht, U.C.5
Gardner, W.6
Lin, W.7
Woese, C.R.8
Soll, D.9
-
30
-
-
34249789024
-
Class i and class II lysyl-tRNA synthetase mutants and the genetic encoding of pyrrolysine in Methanosarcina spp
-
Mahapatra, A., Srinivasan, G., Richter, K. B., Meyer, A., Lienard, T., Zhang, J. K., Zhao, G., Kang, P. T., Chan, M., Gottschalk, G., Metcalf, W. W., and Krzycki, J. A. (2007) Class I and class II lysyl-tRNA synthetase mutants and the genetic encoding of pyrrolysine in Methanosarcina spp Mol. Microbiol. 64, 1306-1318
-
(2007)
Mol. Microbiol.
, vol.64
, pp. 1306-1318
-
-
Mahapatra, A.1
Srinivasan, G.2
Richter, K.B.3
Meyer, A.4
Lienard, T.5
Zhang, J.K.6
Zhao, G.7
Kang, P.T.8
Chan, M.9
Gottschalk, G.10
Metcalf, W.W.11
Krzycki, J.A.12
-
31
-
-
0024392753
-
Structure of E. coli glutaminyl-tRNA synthetase complexed with tRNA(Gln) and ATP at 2.8 Å resolution
-
Rould, M. A., Perona, J. J., Soll, D., and Steitz, T. A. (1989) Structure of E. coli glutaminyl-tRNA synthetase complexed with tRNA(Gln) and ATP at 2.8 Å resolution Science 246, 1135-1142
-
(1989)
Science
, vol.246
, pp. 1135-1142
-
-
Rould, M.A.1
Perona, J.J.2
Soll, D.3
Steitz, T.A.4
-
32
-
-
0034332436
-
TRNA aminoacylation by arginyl-tRNA synthetase: Induced conformations during substrates binding
-
Delagoutte, B., Moras, D., and Cavarelli, J. (2000) tRNA aminoacylation by arginyl-tRNA synthetase: Induced conformations during substrates binding EMBO J. 19, 5599-5610
-
(2000)
EMBO J.
, vol.19
, pp. 5599-5610
-
-
Delagoutte, B.1
Moras, D.2
Cavarelli, J.3
-
33
-
-
0037415750
-
ATP binding by glutamyl-tRNA synthetase is switched to the productive mode by tRNA binding
-
Sekine, S., Nureki, O., Dubois, D. Y., Bernier, S., Chenevert, R., Lapointe, J., Vassylyev, D. G., and Yokoyama, S. (2003) ATP binding by glutamyl-tRNA synthetase is switched to the productive mode by tRNA binding EMBO J. 22, 676-688
-
(2003)
EMBO J.
, vol.22
, pp. 676-688
-
-
Sekine, S.1
Nureki, O.2
Dubois, D.Y.3
Bernier, S.4
Chenevert, R.5
Lapointe, J.6
Vassylyev, D.G.7
Yokoyama, S.8
-
34
-
-
84863723708
-
Structural dynamics of the aminoacylation and proofreading functional cycle of bacterial leucyl-tRNA synthetase
-
Palencia, A., Crepin, T., Vu, M. T., Lincecum, T. L., Jr., Martinis, S. A., and Cusack, S. (2012) Structural dynamics of the aminoacylation and proofreading functional cycle of bacterial leucyl-tRNA synthetase Nat. Struct. Mol. Biol. 19, 677-684
-
(2012)
Nat. Struct. Mol. Biol.
, vol.19
, pp. 677-684
-
-
Palencia, A.1
Crepin, T.2
Vu, M.T.3
Lincecum Jr., T.L.4
Martinis, S.A.5
Cusack, S.6
-
35
-
-
0033551859
-
Insights into editing from an ile-tRNA synthetase structure with tRNAile and mupirocin
-
Silvian, L. F., Wang, J., and Steitz, T. A. (1999) Insights into editing from an ile-tRNA synthetase structure with tRNAile and mupirocin Science 285, 1074-1077
-
(1999)
Science
, vol.285
, pp. 1074-1077
-
-
Silvian, L.F.1
Wang, J.2
Steitz, T.A.3
-
36
-
-
34250799619
-
An antifungal agent inhibits an aminoacyl-tRNA synthetase by trapping tRNA in the editing site
-
Rock, F. L., Mao, W., Yaremchuk, A., Tukalo, M., Crepin, T., Zhou, H., Zhang, Y. K., Hernandez, V., Akama, T., Baker, S. J., Plattner, J. J., Shapiro, L., Martinis, S. A., Benkovic, S. J., Cusack, S., and Alley, M. R. (2007) An antifungal agent inhibits an aminoacyl-tRNA synthetase by trapping tRNA in the editing site Science 316, 1759-1761
-
(2007)
Science
, vol.316
, pp. 1759-1761
-
-
Rock, F.L.1
Mao, W.2
Yaremchuk, A.3
Tukalo, M.4
Crepin, T.5
Zhou, H.6
Zhang, Y.K.7
Hernandez, V.8
Akama, T.9
Baker, S.J.10
Plattner, J.J.11
Shapiro, L.12
Martinis, S.A.13
Benkovic, S.J.14
Cusack, S.15
Alley, M.R.16
-
37
-
-
0034703763
-
Structural basis for double-sieve discrimination of l -valine from l -isoleucine and l -threonine by the complex of tRNA(Val) and valyl-tRNA synthetase
-
Fukai, S., Nureki, O., Sekine, S., Shimada, A., Tao, J., Vassylyev, D. G., and Yokoyama, S. (2000) Structural basis for double-sieve discrimination of l -valine from l -isoleucine and l -threonine by the complex of tRNA(Val) and valyl-tRNA synthetase Cell 103, 793-803
-
(2000)
Cell
, vol.103
, pp. 793-803
-
-
Fukai, S.1
Nureki, O.2
Sekine, S.3
Shimada, A.4
Tao, J.5
Vassylyev, D.G.6
Yokoyama, S.7
-
38
-
-
0037099498
-
Class i tyrosyl-tRNA synthetase has a class II mode of cognate tRNA recognition
-
Yaremchuk, A., Kriklivyi, I., Tukalo, M., and Cusack, S. (2002) Class I tyrosyl-tRNA synthetase has a class II mode of cognate tRNA recognition EMBO J. 21, 3829-3840
-
(2002)
EMBO J.
, vol.21
, pp. 3829-3840
-
-
Yaremchuk, A.1
Kriklivyi, I.2
Tukalo, M.3
Cusack, S.4
-
39
-
-
0141594580
-
A noncognate aminoacyl-tRNA synthetase that may resolve a missing link in protein evolution
-
Skouloubris, S., Ribas de Pouplana, L., De Reuse, H., and Hendrickson, T. L. (2003) A noncognate aminoacyl-tRNA synthetase that may resolve a missing link in protein evolution Proc. Natl. Acad. Sci. U.S.A. 100, 11297-11302
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.100
, pp. 11297-11302
-
-
Skouloubris, S.1
Ribas De Pouplana, L.2
De Reuse, H.3
Hendrickson, T.L.4
-
40
-
-
0344270891
-
Coevolution of an aminoacyl-tRNA synthetase with its tRNA substrates
-
Salazar, J. C., Ahel, I., Orellana, O., Tumbula-Hansen, D., Krieger, R., Daniels, L., and Soll, D. (2003) Coevolution of an aminoacyl-tRNA synthetase with its tRNA substrates Proc. Natl. Acad. Sci. U.S.A. 100, 13863-13868
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.100
, pp. 13863-13868
-
-
Salazar, J.C.1
Ahel, I.2
Orellana, O.3
Tumbula-Hansen, D.4
Krieger, R.5
Daniels, L.6
Soll, D.7
-
41
-
-
0014324873
-
Transfer RNA as a cofactor coupling amino acid synthesis with that of protein
-
Wilcox, M. and Nirenberg, M. (1968) Transfer RNA as a cofactor coupling amino acid synthesis with that of protein Proc. Natl. Acad. Sci. U.S.A. 61, 229-236
-
(1968)
Proc. Natl. Acad. Sci. U.S.A.
, vol.61
, pp. 229-236
-
-
Wilcox, M.1
Nirenberg, M.2
-
42
-
-
77957334080
-
Two enzymes bound to one transfer RNA assume alternative conformations for consecutive reactions
-
Ito, T. and Yokoyama, S. (2010) Two enzymes bound to one transfer RNA assume alternative conformations for consecutive reactions Nature 467, 612-616
-
(2010)
Nature
, vol.467
, pp. 612-616
-
-
Ito, T.1
Yokoyama, S.2
-
43
-
-
0030613553
-
Glu-tRNAGln amidotransferase: A novel heterotrimeric enzyme required for correct decoding of glutamine codons during translation
-
Curnow, A. W., Hong, K., Yuan, R., Kim, S., Martins, O., Winkler, W., Henkin, T. M., and Soll, D. (1997) Glu-tRNAGln amidotransferase: A novel heterotrimeric enzyme required for correct decoding of glutamine codons during translation Proc. Natl. Acad. Sci. U.S.A. 94, 11819-11826
-
(1997)
Proc. Natl. Acad. Sci. U.S.A.
, vol.94
, pp. 11819-11826
-
-
Curnow, A.W.1
Hong, K.2
Yuan, R.3
Kim, S.4
Martins, O.5
Winkler, W.6
Henkin, T.M.7
Soll, D.8
-
44
-
-
40649101442
-
On the evolution of the tRNA-dependent amidotransferases, GatCAB and GatDE
-
Sheppard, K. and Soll, D. (2008) On the evolution of the tRNA-dependent amidotransferases, GatCAB and GatDE J. Mol. Biol. 377, 831-844
-
(2008)
J. Mol. Biol.
, vol.377
, pp. 831-844
-
-
Sheppard, K.1
Soll, D.2
-
45
-
-
0015243237
-
Modification of methionyl-tRNA synthetase by proteolytic cleavage and properties of the trypsin-modified enzyme
-
Cassio, D. and Waller, J. P. (1971) Modification of methionyl-tRNA synthetase by proteolytic cleavage and properties of the trypsin-modified enzyme Eur. J. Biochem. 20, 283-300
-
(1971)
Eur. J. Biochem.
, vol.20
, pp. 283-300
-
-
Cassio, D.1
Waller, J.P.2
-
46
-
-
0037195239
-
Structure and function of the C-terminal domain of methionyl-tRNA synthetase
-
Crepin, T., Schmitt, E., Blanquet, S., and Mechulam, Y. (2002) Structure and function of the C-terminal domain of methionyl-tRNA synthetase Biochemistry 41, 13003-13011
-
(2002)
Biochemistry
, vol.41
, pp. 13003-13011
-
-
Crepin, T.1
Schmitt, E.2
Blanquet, S.3
Mechulam, Y.4
-
47
-
-
0017098606
-
Antico-operative binding of bacterial and mammalian initiator tRNAMet to methionyl-tRNA synthetase from Escherichia coli
-
Blanquet, S. and Dessen, P. (1976) Antico-operative binding of bacterial and mammalian initiator tRNAMet to methionyl-tRNA synthetase from Escherichia coli J. Mol. Biol. 103, 765-784
-
(1976)
J. Mol. Biol.
, vol.103
, pp. 765-784
-
-
Blanquet, S.1
Dessen, P.2
-
48
-
-
0031404731
-
Cysteinyl-tRNA synthetase from Saccharomyces cerevisiae. Purification, characterization and assignment to the genomic sequence YNL247w
-
Motorin, Y., Le Caer, J. P., and Waller, J. P. (1997) Cysteinyl-tRNA synthetase from Saccharomyces cerevisiae. Purification, characterization and assignment to the genomic sequence YNL247w Biochimie 79, 731-740
-
(1997)
Biochimie
, vol.79
, pp. 731-740
-
-
Motorin, Y.1
Le Caer, J.P.2
Waller, J.P.3
-
49
-
-
0034255114
-
An elongation factor-associating domain is inserted into human cysteinyl-tRNA synthetase by alternative splicing
-
Kim, J. E., Kim, K. H., Lee, S. W., Seol, W., Shiba, K., and Kim, S. (2000) An elongation factor-associating domain is inserted into human cysteinyl-tRNA synthetase by alternative splicing Nucleic Acids Res. 28, 2866-2872
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 2866-2872
-
-
Kim, J.E.1
Kim, K.H.2
Lee, S.W.3
Seol, W.4
Shiba, K.5
Kim, S.6
-
50
-
-
7544240563
-
Shape-selective RNA recognition by cysteinyl-tRNA synthetase
-
Hauenstein, S., Zhang, C. M., Hou, Y. M., and Perona, J. J. (2004) Shape-selective RNA recognition by cysteinyl-tRNA synthetase Nat. Struct. Mol. Biol. 11, 1134-1141
-
(2004)
Nat. Struct. Mol. Biol.
, vol.11
, pp. 1134-1141
-
-
Hauenstein, S.1
Zhang, C.M.2
Hou, Y.M.3
Perona, J.J.4
-
51
-
-
27144545879
-
Structural basis for anticodon recognition by methionyl-tRNA synthetase
-
Nakanishi, K., Ogiso, Y., Nakama, T., Fukai, S., and Nureki, O. (2005) Structural basis for anticodon recognition by methionyl-tRNA synthetase Nat. Struct. Mol. Biol. 12, 931-932
-
(2005)
Nat. Struct. Mol. Biol.
, vol.12
, pp. 931-932
-
-
Nakanishi, K.1
Ogiso, Y.2
Nakama, T.3
Fukai, S.4
Nureki, O.5
-
52
-
-
0026429275
-
Class II aminoacyl transfer RNA synthetases: Crystal structure of yeast aspartyl-tRNA synthetase complexed with tRNA(Asp)
-
Ruff, M., Krishnaswamy, S., Boeglin, M., Poterszman, A., Mitschler, A., Podjarny, A., Rees, B., Thierry, J. C., and Moras, D. (1991) Class II aminoacyl transfer RNA synthetases: Crystal structure of yeast aspartyl-tRNA synthetase complexed with tRNA(Asp) Science 252, 1682-1689
-
(1991)
Science
, vol.252
, pp. 1682-1689
-
-
Ruff, M.1
Krishnaswamy, S.2
Boeglin, M.3
Poterszman, A.4
Mitschler, A.5
Podjarny, A.6
Rees, B.7
Thierry, J.C.8
Moras, D.9
-
53
-
-
0025043116
-
A second class of synthetase structure revealed by X-ray analysis of Escherichia coli seryl-tRNA synthetase at 2.5 Å
-
Cusack, S., Berthet-Colominas, C., Hartlein, M., Nassar, N., and Leberman, R. (1990) A second class of synthetase structure revealed by X-ray analysis of Escherichia coli seryl-tRNA synthetase at 2.5 Å Nature 347, 249-255
-
(1990)
Nature
, vol.347
, pp. 249-255
-
-
Cusack, S.1
Berthet-Colominas, C.2
Hartlein, M.3
Nassar, N.4
Leberman, R.5
-
54
-
-
33748250388
-
Catalysis of the tRNA aminoacylation reaction
-
(Ibba, M. Francklyn, C. and Cusack, S. Eds.) pp, Landes Bioscience/Eurekah.com
-
First, E. A. (2005) Catalysis of the tRNA aminoacylation reaction. In The Aminoacyl-tRNA Synthetases (Ibba, M., Francklyn, C., and Cusack, S., Eds.) pp 328-352, Landes Bioscience/Eurekah.com.
-
(2005)
The Aminoacyl-tRNA Synthetases
, pp. 328-352
-
-
First, E.A.1
-
55
-
-
0030962189
-
Structural and functional considerations of the aminoacylation reaction
-
Arnez, J. G. and Moras, D. (1997) Structural and functional considerations of the aminoacylation reaction Trends Biochem. Sci. 22, 211-216
-
(1997)
Trends Biochem. Sci.
, vol.22
, pp. 211-216
-
-
Arnez, J.G.1
Moras, D.2
-
56
-
-
0029099218
-
Eleven down and nine to go
-
Cusack, S. (1995) Eleven down and nine to go Nat. Struct. Biol. 2, 824-831
-
(1995)
Nat. Struct. Biol.
, vol.2
, pp. 824-831
-
-
Cusack, S.1
-
57
-
-
0031456444
-
Aminoacyl-tRNA synthetases
-
Cusack, S. (1997) Aminoacyl-tRNA synthetases Curr. Opin. Struct. Biol. 7, 881-889
-
(1997)
Curr. Opin. Struct. Biol.
, vol.7
, pp. 881-889
-
-
Cusack, S.1
-
58
-
-
84857030795
-
Structural analyses clarify the complex control of mistranslation by tRNA synthetases
-
Guo, M. and Schimmel, P. (2012) Structural analyses clarify the complex control of mistranslation by tRNA synthetases Curr. Opin. Struct. Biol. 22, 119-126
-
(2012)
Curr. Opin. Struct. Biol.
, vol.22
, pp. 119-126
-
-
Guo, M.1
Schimmel, P.2
-
59
-
-
14244262599
-
Evolution of different oligomeric glycyl-tRNA synthetases
-
Tang, S. N. and Huang, J. F. (2005) Evolution of different oligomeric glycyl-tRNA synthetases FEBS Lett. 579, 1441-1445
-
(2005)
FEBS Lett.
, vol.579
, pp. 1441-1445
-
-
Tang, S.N.1
Huang, J.F.2
-
60
-
-
80755122888
-
Allosteric interaction of nucleotides and tRNA(Ala) with E. coli alanyl-tRNA synthetase
-
Dignam, J. D., Guo, J., Griffith, W. P., Garbett, N. C., Holloway, A., and Mueser, T. (2011) Allosteric interaction of nucleotides and tRNA(Ala) with E. coli alanyl-tRNA synthetase Biochemistry 50, 9886-9900
-
(2011)
Biochemistry
, vol.50
, pp. 9886-9900
-
-
Dignam, J.D.1
Guo, J.2
Griffith, W.P.3
Garbett, N.C.4
Holloway, A.5
Mueser, T.6
-
61
-
-
0027851759
-
Sequence, structure and evolutionary relationships between class 2 aminoacyl-tRNA synthetases: An update
-
Cusack, S. (1993) Sequence, structure and evolutionary relationships between class 2 aminoacyl-tRNA synthetases: An update Biochimie 75, 1077-1081
-
(1993)
Biochimie
, vol.75
, pp. 1077-1081
-
-
Cusack, S.1
-
62
-
-
0027411514
-
Yeast tRNA(Asp) recognition by its cognate class II aminoacyl-tRNA synthetase
-
Cavarelli, J., Rees, B., Ruff, M., Thierry, J. C., and Moras, D. (1993) Yeast tRNA(Asp) recognition by its cognate class II aminoacyl-tRNA synthetase Nature 362, 181-184
-
(1993)
Nature
, vol.362
, pp. 181-184
-
-
Cavarelli, J.1
Rees, B.2
Ruff, M.3
Thierry, J.C.4
Moras, D.5
-
63
-
-
0029643954
-
The crystal structure of the lysyl-tRNA synthetase (LysU) from Escherichia coli
-
Onesti, S., Miller, A. D., and Brick, P. (1995) The crystal structure of the lysyl-tRNA synthetase (LysU) from Escherichia coli Structure 3, 163-176
-
(1995)
Structure
, vol.3
, pp. 163-176
-
-
Onesti, S.1
Miller, A.D.2
Brick, P.3
-
64
-
-
0032525301
-
The crystal structure of asparaginyl-tRNA synthetase from Thermus thermophilus and its complexes with ATP and asparaginyl-adenylate: The mechanism of discrimination between asparagine and aspartic acid
-
Berthet-Colominas, C., Seignovert, L., Hartlein, M., Grotli, M., Cusack, S., and Leberman, R. (1998) The crystal structure of asparaginyl-tRNA synthetase from Thermus thermophilus and its complexes with ATP and asparaginyl-adenylate: The mechanism of discrimination between asparagine and aspartic acid EMBO J. 17, 2947-2960
-
(1998)
EMBO J.
, vol.17
, pp. 2947-2960
-
-
Berthet-Colominas, C.1
Seignovert, L.2
Hartlein, M.3
Grotli, M.4
Cusack, S.5
Leberman, R.6
-
65
-
-
0029781454
-
TRNA-dependent asparagine formation
-
Curnow, A. W., Ibba, M., and Soll, D. (1996) tRNA-dependent asparagine formation Nature 382, 589-590
-
(1996)
Nature
, vol.382
, pp. 589-590
-
-
Curnow, A.W.1
Ibba, M.2
Soll, D.3
-
66
-
-
0030811296
-
Existence of two distinct aspartyl-tRNA synthetases in Thermus thermophilus. Structural and biochemical properties of the two enzymes
-
Becker, H. D., Reinbolt, J., Kreutzer, R., Giege, R., and Kern, D. (1997) Existence of two distinct aspartyl-tRNA synthetases in Thermus thermophilus. Structural and biochemical properties of the two enzymes Biochemistry 36, 8785-8797
-
(1997)
Biochemistry
, vol.36
, pp. 8785-8797
-
-
Becker, H.D.1
Reinbolt, J.2
Kreutzer, R.3
Giege, R.4
Kern, D.5
-
67
-
-
41849117355
-
From one amino acid to another: TRNA-dependent amino acid biosynthesis
-
Sheppard, K., Yuan, J., Hohn, M. J., Jester, B., Devine, K. M., and Soll, D. (2008) From one amino acid to another: tRNA-dependent amino acid biosynthesis Nucleic Acids Res. 36, 1813-1825
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 1813-1825
-
-
Sheppard, K.1
Yuan, J.2
Hohn, M.J.3
Jester, B.4
Devine, K.M.5
Soll, D.6
-
68
-
-
0029127816
-
Crystal structure of histidyl-tRNA synthetase from Escherichia coli complexed with histidyl-adenylate
-
Arnez, J. G., Harris, D. C., Mitschler, A., Rees, B., Francklyn, C. S., and Moras, D. (1995) Crystal structure of histidyl-tRNA synthetase from Escherichia coli complexed with histidyl-adenylate EMBO J. 14, 4143-4155
-
(1995)
EMBO J.
, vol.14
, pp. 4143-4155
-
-
Arnez, J.G.1
Harris, D.C.2
Mitschler, A.3
Rees, B.4
Francklyn, C.S.5
Moras, D.6
-
69
-
-
0029091055
-
Crystal structure of glycyl-tRNA synthetase from Thermus thermophilus
-
Logan, D. T., Mazauric, M. H., Kern, D., and Moras, D. (1995) Crystal structure of glycyl-tRNA synthetase from Thermus thermophilus EMBO J. 14, 4156-4167
-
(1995)
EMBO J.
, vol.14
, pp. 4156-4167
-
-
Logan, D.T.1
Mazauric, M.H.2
Kern, D.3
Moras, D.4
-
70
-
-
0026625691
-
Eight base changes are sufficient to convert a leucine-inserting tRNA into a serine-inserting tRNA
-
Normanly, J., Ollick, T., and Abelson, J. (1992) Eight base changes are sufficient to convert a leucine-inserting tRNA into a serine-inserting tRNA Proc. Natl. Acad. Sci. U.S.A. 89, 5680-5684
-
(1992)
Proc. Natl. Acad. Sci. U.S.A.
, vol.89
, pp. 5680-5684
-
-
Normanly, J.1
Ollick, T.2
Abelson, J.3
-
71
-
-
0033617335
-
The structure of threonyl-tRNA synthetase-tRNA(Thr) complex enlightens its repressor activity and reveals an essential zinc ion in the active site
-
Sankaranarayanan, R., Dock-Bregeon, A. C., Romby, P., Caillet, J., Springer, M., Rees, B., Ehresmann, C., Ehresmann, B., and Moras, D. (1999) The structure of threonyl-tRNA synthetase-tRNA(Thr) complex enlightens its repressor activity and reveals an essential zinc ion in the active site Cell 97, 371-381
-
(1999)
Cell
, vol.97
, pp. 371-381
-
-
Sankaranarayanan, R.1
Dock-Bregeon, A.C.2
Romby, P.3
Caillet, J.4
Springer, M.5
Rees, B.6
Ehresmann, C.7
Ehresmann, B.8
Moras, D.9
-
72
-
-
0034282792
-
Crystal structure of a eukaryote/archaeon-like protyl-tRNA synthetase and its complex with tRNAPro(CGG)
-
Yaremchuk, A., Cusack, S., and Tukalo, M. (2000) Crystal structure of a eukaryote/archaeon-like protyl-tRNA synthetase and its complex with tRNAPro(CGG) EMBO J. 19, 4745-4758
-
(2000)
EMBO J.
, vol.19
, pp. 4745-4758
-
-
Yaremchuk, A.1
Cusack, S.2
Tukalo, M.3
-
73
-
-
0032431904
-
Sequence divergence of seryl-tRNA synthetases in archaea
-
Kim, H. S., Vothknecht, U. C., Hedderich, R., Celic, I., and Soll, D. (1998) Sequence divergence of seryl-tRNA synthetases in archaea J. Bacteriol. 180, 6446-6449
-
(1998)
J. Bacteriol.
, vol.180
, pp. 6446-6449
-
-
Kim, H.S.1
Vothknecht, U.C.2
Hedderich, R.3
Celic, I.4
Soll, D.5
-
74
-
-
33745763402
-
Structure of the unusual seryl-tRNA synthetase reveals a distinct zinc-dependent mode of substrate recognition
-
Bilokapic, S., Maier, T., Ahel, D., Gruic-Sovulj, I., Soll, D., Weygand-Durasevic, I., and Ban, N. (2006) Structure of the unusual seryl-tRNA synthetase reveals a distinct zinc-dependent mode of substrate recognition EMBO J. 25, 2498-2509
-
(2006)
EMBO J.
, vol.25
, pp. 2498-2509
-
-
Bilokapic, S.1
Maier, T.2
Ahel, D.3
Gruic-Sovulj, I.4
Soll, D.5
Weygand-Durasevic, I.6
Ban, N.7
-
75
-
-
0033637662
-
Transfer RNA-mediated editing in threonyl-tRNA synthetase. The class II solution to the double discrimination problem
-
Dock-Bregeon, A., Sankaranarayanan, R., Romby, P., Caillet, J., Springer, M., Rees, B., Francklyn, C. S., Ehresmann, C., and Moras, D. (2000) Transfer RNA-mediated editing in threonyl-tRNA synthetase. The class II solution to the double discrimination problem Cell 103, 877-884
-
(2000)
Cell
, vol.103
, pp. 877-884
-
-
Dock-Bregeon, A.1
Sankaranarayanan, R.2
Romby, P.3
Caillet, J.4
Springer, M.5
Rees, B.6
Francklyn, C.S.7
Ehresmann, C.8
Moras, D.9
-
76
-
-
0032518606
-
TRNA(Pro) anticodon recognition by Thermus thermophilus prolyl-tRNA synthetase
-
Cusack, S., Yaremchuk, A., Krikliviy, I., and Tukalo, M. (1998) tRNA(Pro) anticodon recognition by Thermus thermophilus prolyl-tRNA synthetase Structure 6, 101-108
-
(1998)
Structure
, vol.6
, pp. 101-108
-
-
Cusack, S.1
Yaremchuk, A.2
Krikliviy, I.3
Tukalo, M.4
-
77
-
-
0037018949
-
Functional role of the prokaryotic proline-tRNA synthetase insertion domain in amino acid editing
-
Wong, F. C., Beuning, P. J., Nagan, M., Shiba, K., and Musier-Forsyth, K. (2002) Functional role of the prokaryotic proline-tRNA synthetase insertion domain in amino acid editing Biochemistry 41, 7108-7115
-
(2002)
Biochemistry
, vol.41
, pp. 7108-7115
-
-
Wong, F.C.1
Beuning, P.J.2
Nagan, M.3
Shiba, K.4
Musier-Forsyth, K.5
-
78
-
-
35348920149
-
Hydrolysis of non-cognate aminoacyl-adenylates by a class II aminoacyl-tRNA synthetase lacking an editing domain
-
Gruic-Sovulj, I., Rokov-Plavec, J., and Weygand-Durasevic, I. (2007) Hydrolysis of non-cognate aminoacyl-adenylates by a class II aminoacyl-tRNA synthetase lacking an editing domain FEBS Lett. 581, 5110-5114
-
(2007)
FEBS Lett.
, vol.581
, pp. 5110-5114
-
-
Gruic-Sovulj, I.1
Rokov-Plavec, J.2
Weygand-Durasevic, I.3
-
79
-
-
0030885191
-
Aminoacyl thioester chemistry of class II aminoacyl-tRNA synthetases
-
Jakubowski, H. (1997) Aminoacyl thioester chemistry of class II aminoacyl-tRNA synthetases Biochemistry 36, 11077-11085
-
(1997)
Biochemistry
, vol.36
, pp. 11077-11085
-
-
Jakubowski, H.1
-
80
-
-
0018780587
-
An editing mechanism for the methionyl-tRNA synthetase in the selection of amino acids in protein synthesis
-
Fersht, A. R. and Dingwall, C. (1979) An editing mechanism for the methionyl-tRNA synthetase in the selection of amino acids in protein synthesis Biochemistry 18, 1250-1256
-
(1979)
Biochemistry
, vol.18
, pp. 1250-1256
-
-
Fersht, A.R.1
Dingwall, C.2
-
82
-
-
33847257897
-
Toward understanding phosphoseryl-tRNACys formation: The crystal structure of Methanococcus maripaludis phosphoseryl-tRNA synthetase
-
Kamtekar, S., Hohn, M. J., Park, H. S., Schnitzbauer, M., Sauerwald, A., Soll, D., and Steitz, T. A. (2007) Toward understanding phosphoseryl-tRNACys formation: The crystal structure of Methanococcus maripaludis phosphoseryl-tRNA synthetase Proc. Natl. Acad. Sci. U.S.A. 104, 2620-2625
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 2620-2625
-
-
Kamtekar, S.1
Hohn, M.J.2
Park, H.S.3
Schnitzbauer, M.4
Sauerwald, A.5
Soll, D.6
Steitz, T.A.7
-
83
-
-
34247234997
-
Structural insights into the first step of RNA-dependent cysteine biosynthesis in archaea
-
Fukunaga, R. and Yokoyama, S. (2007) Structural insights into the first step of RNA-dependent cysteine biosynthesis in archaea Nat. Struct. Mol. Biol. 14, 272-279
-
(2007)
Nat. Struct. Mol. Biol.
, vol.14
, pp. 272-279
-
-
Fukunaga, R.1
Yokoyama, S.2
-
84
-
-
0029165043
-
Structure of phenylalanyl-tRNA synthetase from Thermus thermophilus
-
Mosyak, L., Reshetnikova, L., Goldgur, Y., Delarue, M., and Safro, M. G. (1995) Structure of phenylalanyl-tRNA synthetase from Thermus thermophilus Nat. Struct. Biol. 2, 537-547
-
(1995)
Nat. Struct. Biol.
, vol.2
, pp. 537-547
-
-
Mosyak, L.1
Reshetnikova, L.2
Goldgur, Y.3
Delarue, M.4
Safro, M.G.5
-
85
-
-
0031568337
-
The crystal structure of phenylalanyl-tRNA synthetase from Thermus thermophilus complexed with cognate tRNAPhe
-
Goldgur, Y., Mosyak, L., Reshetnikova, L., Ankilova, V., Lavrik, O., Khodyreva, S., and Safro, M. (1997) The crystal structure of phenylalanyl-tRNA synthetase from Thermus thermophilus complexed with cognate tRNAPhe Structure 5, 59-68
-
(1997)
Structure
, vol.5
, pp. 59-68
-
-
Goldgur, Y.1
Mosyak, L.2
Reshetnikova, L.3
Ankilova, V.4
Lavrik, O.5
Khodyreva, S.6
Safro, M.7
-
86
-
-
0037165964
-
A new UAG-encoded residue in the structure of a methanogen methyltransferase
-
Hao, B., Gong, W., Ferguson, T. K., James, C. M., Krzycki, J. A., and Chan, M. K. (2002) A new UAG-encoded residue in the structure of a methanogen methyltransferase Science 296, 1462-1466
-
(2002)
Science
, vol.296
, pp. 1462-1466
-
-
Hao, B.1
Gong, W.2
Ferguson, T.K.3
James, C.M.4
Krzycki, J.A.5
Chan, M.K.6
-
87
-
-
4344643959
-
An aminoacyl-tRNA synthetase that specifically activates pyrrolysine
-
Polycarpo, C., Ambrogelly, A., Berube, A., Winbush, S. M., McCloskey, J. A., Crain, P. F., Wood, J. L., and Soll, D. (2004) An aminoacyl-tRNA synthetase that specifically activates pyrrolysine Proc. Natl. Acad. Sci. U.S.A. 101, 12450-12454
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 12450-12454
-
-
Polycarpo, C.1
Ambrogelly, A.2
Berube, A.3
Winbush, S.M.4
McCloskey, J.A.5
Crain, P.F.6
Wood, J.L.7
Soll, D.8
-
88
-
-
4644312237
-
Direct charging of tRNA(CUA) with pyrrolysine in vitro and in vivo
-
Blight, S. K., Larue, R. C., Mahapatra, A., Longstaff, D. G., Chang, E., Zhao, G., Kang, P. T., Green-Church, K. B., Chan, M. K., and Krzycki, J. A. (2004) Direct charging of tRNA(CUA) with pyrrolysine in vitro and in vivo Nature 431, 333-335
-
(2004)
Nature
, vol.431
, pp. 333-335
-
-
Blight, S.K.1
Larue, R.C.2
Mahapatra, A.3
Longstaff, D.G.4
Chang, E.5
Zhao, G.6
Kang, P.T.7
Green-Church, K.B.8
Chan, M.K.9
Krzycki, J.A.10
-
89
-
-
79959314842
-
Functional context, biosynthesis, and genetic encoding of pyrrolysine
-
Gaston, M. A., Jiang, R., and Krzycki, J. A. (2011) Functional context, biosynthesis, and genetic encoding of pyrrolysine Curr. Opin. Microbiol. 14, 342-349
-
(2011)
Curr. Opin. Microbiol.
, vol.14
, pp. 342-349
-
-
Gaston, M.A.1
Jiang, R.2
Krzycki, J.A.3
-
90
-
-
80052165817
-
Expanding the genetic code of Escherichia coli with phosphoserine
-
Park, H. S., Hohn, M. J., Umehara, T., Guo, L. T., Osborne, E. M., Benner, J., Noren, C. J., Rinehart, J., and Soll, D. (2011) Expanding the genetic code of Escherichia coli with phosphoserine Science 333, 1151-1154
-
(2011)
Science
, vol.333
, pp. 1151-1154
-
-
Park, H.S.1
Hohn, M.J.2
Umehara, T.3
Guo, L.T.4
Osborne, E.M.5
Benner, J.6
Noren, C.J.7
Rinehart, J.8
Soll, D.9
-
91
-
-
68449088258
-
The C-Ala domain brings together editing and aminoacylation functions on one tRNA
-
Guo, M., Chong, Y. E., Beebe, K., Shapiro, R., Yang, X. L., and Schimmel, P. (2009) The C-Ala domain brings together editing and aminoacylation functions on one tRNA Science 325, 744-747
-
(2009)
Science
, vol.325
, pp. 744-747
-
-
Guo, M.1
Chong, Y.E.2
Beebe, K.3
Shapiro, R.4
Yang, X.L.5
Schimmel, P.6
-
92
-
-
61349139930
-
Pyrrolysyl-tRNA synthetase-tRNA(Pyl) structure reveals the molecular basis of orthogonality
-
Nozawa, K., O'Donoghue, P., Gundllapalli, S., Araiso, Y., Ishitani, R., Umehara, T., Soll, D., and Nureki, O. (2009) Pyrrolysyl-tRNA synthetase-tRNA(Pyl) structure reveals the molecular basis of orthogonality Nature 457, 1163-1167
-
(2009)
Nature
, vol.457
, pp. 1163-1167
-
-
Nozawa, K.1
O'Donoghue, P.2
Gundllapalli, S.3
Araiso, Y.4
Ishitani, R.5
Umehara, T.6
Soll, D.7
Nureki, O.8
-
93
-
-
0028105601
-
The 2.9 Å crystal structure of T. thermophilus seryl-tRNA synthetase complexed with tRNA(Ser)
-
Biou, V., Yaremchuk, A., Tukalo, M., and Cusack, S. (1994) The 2.9 Å crystal structure of T. thermophilus seryl-tRNA synthetase complexed with tRNA(Ser) Science 263, 1404-1410
-
(1994)
Science
, vol.263
, pp. 1404-1410
-
-
Biou, V.1
Yaremchuk, A.2
Tukalo, M.3
Cusack, S.4
-
94
-
-
0028072789
-
Seryl-tRNA synthetase from Escherichia coli: Implication of its N-terminal domain in aminoacylation activity and specificity
-
Borel, F., Vincent, C., Leberman, R., and Hartlein, M. (1994) Seryl-tRNA synthetase from Escherichia coli: Implication of its N-terminal domain in aminoacylation activity and specificity Nucleic Acids Res. 22, 2963-2969
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 2963-2969
-
-
Borel, F.1
Vincent, C.2
Leberman, R.3
Hartlein, M.4
-
95
-
-
0027482856
-
Role of dimerization in yeast aspartyl-tRNA synthetase and importance of the class II invariant proline
-
Eriani, G., Cavarelli, J., Martin, F., Dirheimer, G., Moras, D., and Gangloff, J. (1993) Role of dimerization in yeast aspartyl-tRNA synthetase and importance of the class II invariant proline Proc. Natl. Acad. Sci. U.S.A. 90, 10816-10820
-
(1993)
Proc. Natl. Acad. Sci. U.S.A.
, vol.90
, pp. 10816-10820
-
-
Eriani, G.1
Cavarelli, J.2
Martin, F.3
Dirheimer, G.4
Moras, D.5
Gangloff, J.6
-
96
-
-
0035903548
-
The structure of an AspRS-tRNA(Asp) complex reveals a tRNA-dependent control mechanism
-
Moulinier, L., Eiler, S., Eriani, G., Gangloff, J., Thierry, J. C., Gabriel, K., McClain, W. H., and Moras, D. (2001) The structure of an AspRS-tRNA(Asp) complex reveals a tRNA-dependent control mechanism EMBO J. 20, 5290-5301
-
(2001)
EMBO J.
, vol.20
, pp. 5290-5301
-
-
Moulinier, L.1
Eiler, S.2
Eriani, G.3
Gangloff, J.4
Thierry, J.C.5
Gabriel, K.6
McClain, W.H.7
Moras, D.8
-
97
-
-
33745529250
-
Two conformations of a crystalline human tRNA synthetase-tRNA complex: Implications for protein synthesis
-
Yang, X. L., Otero, F. J., Ewalt, K. L., Liu, J., Swairjo, M. A., Kohrer, C., RajBhandary, U. L., Skene, R. J., McRee, D. E., and Schimmel, P. (2006) Two conformations of a crystalline human tRNA synthetase-tRNA complex: Implications for protein synthesis EMBO J. 25, 2919-2929
-
(2006)
EMBO J.
, vol.25
, pp. 2919-2929
-
-
Yang, X.L.1
Otero, F.J.2
Ewalt, K.L.3
Liu, J.4
Swairjo, M.A.5
Kohrer, C.6
Rajbhandary, U.L.7
Skene, R.J.8
McRee, D.E.9
Schimmel, P.10
-
98
-
-
52049101383
-
The homotetrameric phosphoseryl-tRNA synthetase from Methanosarcina mazei exhibits half-of-the-sites activity
-
Hauenstein, S. I., Hou, Y. M., and Perona, J. J. (2008) The homotetrameric phosphoseryl-tRNA synthetase from Methanosarcina mazei exhibits half-of-the-sites activity J. Biol. Chem. 283, 21997-22006
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 21997-22006
-
-
Hauenstein, S.I.1
Hou, Y.M.2
Perona, J.J.3
-
99
-
-
27544465234
-
Asymmetric behavior of archaeal prolyl-tRNA synthetase
-
Ambrogelly, A., Kamtekar, S., Stathopoulos, C., Kennedy, D., and Soll, D. (2005) Asymmetric behavior of archaeal prolyl-tRNA synthetase FEBS Lett. 579, 6017-6022
-
(2005)
FEBS Lett.
, vol.579
, pp. 6017-6022
-
-
Ambrogelly, A.1
Kamtekar, S.2
Stathopoulos, C.3
Kennedy, D.4
Soll, D.5
-
100
-
-
0021765656
-
Crystals of Bacillus stearothermophilus tryptophanyl-tRNA synthetase containing enzymatically formed acyl transfer product tryptophanyl-ATP, an active site maker for the 3′ CCA terminus of tryptophanyl-tRNATrp
-
Coleman, D. E. and Carter, C. W., Jr. (1984) Crystals of Bacillus stearothermophilus tryptophanyl-tRNA synthetase containing enzymatically formed acyl transfer product tryptophanyl-ATP, an active site maker for the 3′ CCA terminus of tryptophanyl-tRNATrp Biochemistry 23, 381-385
-
(1984)
Biochemistry
, vol.23
, pp. 381-385
-
-
Coleman, D.E.1
Carter Jr., C.W.2
-
101
-
-
0023677817
-
Tyrosyl-tRNA synthetase acts as an asymmetric dimer in charging tRNA. A rationale for half-of-the-sites activity
-
Ward, W. H. and Fersht, A. R. (1988) Tyrosyl-tRNA synthetase acts as an asymmetric dimer in charging tRNA. A rationale for half-of-the-sites activity Biochemistry 27, 5525-5530
-
(1988)
Biochemistry
, vol.27
, pp. 5525-5530
-
-
Ward, W.H.1
Fersht, A.R.2
-
102
-
-
77958168848
-
Pyrrolysyl-tRNA synthetase-tRNA(Pyl) structure reveals the molecular basis of orthogonality
-
Nozawa, K., Ishitani, R., and Nureki, O. (2010) [Pyrrolysyl-tRNA synthetase-tRNA(Pyl) structure reveals the molecular basis of orthogonality] Seikagaku 82, 617-623
-
(2010)
Seikagaku
, vol.82
, pp. 617-623
-
-
Nozawa, K.1
Ishitani, R.2
Nureki, O.3
-
103
-
-
84855835638
-
Crystal structure of human mitochondrial PheRS complexed with tRNA(Phe) in the active "open" state
-
Klipcan, L., Moor, N., Finarov, I., Kessler, N., Sukhanova, M., and Safro, M. G. (2012) Crystal structure of human mitochondrial PheRS complexed with tRNA(Phe) in the active "open" state J. Mol. Biol. 415, 527-537
-
(2012)
J. Mol. Biol.
, vol.415
, pp. 527-537
-
-
Klipcan, L.1
Moor, N.2
Finarov, I.3
Kessler, N.4
Sukhanova, M.5
Safro, M.G.6
-
104
-
-
46049109509
-
The tRNA-induced conformational activation of human mitochondrial phenylalanyl-tRNA synthetase
-
Klipcan, L., Levin, I., Kessler, N., Moor, N., Finarov, I., and Safro, M. (2008) The tRNA-induced conformational activation of human mitochondrial phenylalanyl-tRNA synthetase Structure 16, 1095-1104
-
(2008)
Structure
, vol.16
, pp. 1095-1104
-
-
Klipcan, L.1
Levin, I.2
Kessler, N.3
Moor, N.4
Finarov, I.5
Safro, M.6
-
105
-
-
0017230165
-
Mechanism of aminoacylation of tRNA. Proof of the aminoacyl adenylate pathway for the isoleucyl- and tyrosyl-tRNA synthetases from Escherichia coli K12
-
Fersht, A. R. and Kaethner, M. M. (1976) Mechanism of aminoacylation of tRNA. Proof of the aminoacyl adenylate pathway for the isoleucyl- and tyrosyl-tRNA synthetases from Escherichia coli K12 Biochemistry 15, 818-823
-
(1976)
Biochemistry
, vol.15
, pp. 818-823
-
-
Fersht, A.R.1
Kaethner, M.M.2
-
106
-
-
80051664164
-
Two-step aminoacylation of tRNA without channeling in Archaea
-
Bhaskaran, H. and Perona, J. J. (2011) Two-step aminoacylation of tRNA without channeling in Archaea J. Mol. Biol. 411, 854-869
-
(2011)
J. Mol. Biol.
, vol.411
, pp. 854-869
-
-
Bhaskaran, H.1
Perona, J.J.2
-
107
-
-
33746189733
-
Distinct kinetic mechanisms of the two classes of aminoacyl-tRNA synthetases
-
Zhang, C. M., Perona, J. J., Ryu, K., Francklyn, C., and Hou, Y. M. (2006) Distinct kinetic mechanisms of the two classes of aminoacyl-tRNA synthetases J. Mol. Biol. 361, 300-311
-
(2006)
J. Mol. Biol.
, vol.361
, pp. 300-311
-
-
Zhang, C.M.1
Perona, J.J.2
Ryu, K.3
Francklyn, C.4
Hou, Y.M.5
-
108
-
-
77954908008
-
Partitioning of tRNA-dependent editing between pre- and post-transfer pathways in class i aminoacyl-tRNA synthetases
-
Dulic, M., Cvetesic, N., Perona, J. J., and Gruic-Sovulj, I. (2010) Partitioning of tRNA-dependent editing between pre- and post-transfer pathways in class I aminoacyl-tRNA synthetases J. Biol. Chem. 285, 23799-23809
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 23799-23809
-
-
Dulic, M.1
Cvetesic, N.2
Perona, J.J.3
Gruic-Sovulj, I.4
-
109
-
-
0033582265
-
Substrate recognition by class i lysyl-tRNA synthetases: A molecular basis for gene displacement
-
Ibba, M., Losey, H. C., Kawarabayasi, Y., Kikuchi, H., Bunjun, S., and Soll, D. (1999) Substrate recognition by class I lysyl-tRNA synthetases: A molecular basis for gene displacement Proc. Natl. Acad. Sci. U.S.A. 96, 418-423
-
(1999)
Proc. Natl. Acad. Sci. U.S.A.
, vol.96
, pp. 418-423
-
-
Ibba, M.1
Losey, H.C.2
Kawarabayasi, Y.3
Kikuchi, H.4
Bunjun, S.5
Soll, D.6
-
110
-
-
0018575151
-
Glutamyl transfer ribonucleic acid synthetase of Escherichia coli. Study of the interactions with its substrates
-
Kern, D. and Lapointe, J. (1979) Glutamyl transfer ribonucleic acid synthetase of Escherichia coli. Study of the interactions with its substrates Biochemistry 18, 5809-5818
-
(1979)
Biochemistry
, vol.18
, pp. 5809-5818
-
-
Kern, D.1
Lapointe, J.2
-
111
-
-
0014199544
-
The activation of arginyl transfer ribonucleic acid synthetase by transfer ribonucleic acid
-
Mehler, A. H. and Mitra, S. K. (1967) The activation of arginyl transfer ribonucleic acid synthetase by transfer ribonucleic acid J. Biol. Chem. 242, 5495-5499
-
(1967)
J. Biol. Chem.
, vol.242
, pp. 5495-5499
-
-
Mehler, A.H.1
Mitra, S.K.2
-
112
-
-
0000380498
-
Glutamyl and Glutaminyl Ribonucleic Acid Synthetases of Escherichia coli W. Separation, Properties, and Stimulation of Adenosine Triphosphate- Pyrophosphate Exchange by Acceptor Ribonucleic Acid
-
Ravel, J. M., Wang, S. F., Heinemeyer, C., and Shive, W. (1965) Glutamyl and Glutaminyl Ribonucleic Acid Synthetases of Escherichia coli W. Separation, Properties, and Stimulation of Adenosine Triphosphate-Pyrophosphate Exchange by Acceptor Ribonucleic Acid J. Biol. Chem. 240, 432-438
-
(1965)
J. Biol. Chem.
, vol.240
, pp. 432-438
-
-
Ravel, J.M.1
Wang, S.F.2
Heinemeyer, C.3
Shive, W.4
-
113
-
-
0038662765
-
TRNA-dependent active site assembly in a class i aminoacyl-tRNA synthetase
-
Sherlin, L. D. and Perona, J. J. (2003) tRNA-dependent active site assembly in a class I aminoacyl-tRNA synthetase Structure 11, 591-603
-
(2003)
Structure
, vol.11
, pp. 591-603
-
-
Sherlin, L.D.1
Perona, J.J.2
-
114
-
-
0035119935
-
Structural basis for anticodon recognition by discriminating glutamyl-tRNA synthetase
-
Sekine, S., Nureki, O., Shimada, A., Vassylyev, D. G., and Yokoyama, S. (2001) Structural basis for anticodon recognition by discriminating glutamyl-tRNA synthetase Nat. Struct. Biol. 8, 203-206
-
(2001)
Nat. Struct. Biol.
, vol.8
, pp. 203-206
-
-
Sekine, S.1
Nureki, O.2
Shimada, A.3
Vassylyev, D.G.4
Yokoyama, S.5
-
115
-
-
79952090207
-
Role for a conserved structural motif in assembly of a class i aminoacyl-tRNA synthetase active site
-
Casina, V. C., Lobashevsky, A. A., McKinney, W. E., Brown, C. L., and Alexander, R. W. (2011) Role for a conserved structural motif in assembly of a class I aminoacyl-tRNA synthetase active site Biochemistry 50, 763-769
-
(2011)
Biochemistry
, vol.50
, pp. 763-769
-
-
Casina, V.C.1
Lobashevsky, A.A.2
McKinney, W.E.3
Brown, C.L.4
Alexander, R.W.5
-
116
-
-
0018677826
-
The stereochemical course of amino acid activation by methionyl- and tyrosyl-tRNA synthetases
-
Langdon, S. P. and Lowe, G. (1979) The stereochemical course of amino acid activation by methionyl- and tyrosyl-tRNA synthetases Nature 281, 320-321
-
(1979)
Nature
, vol.281
, pp. 320-321
-
-
Langdon, S.P.1
Lowe, G.2
-
117
-
-
0023868490
-
Reconstruction by site-directed mutagenesis of the transition state for the activation of tyrosine by the tyrosyl-tRNA synthetase: A mobile loop envelopes the transition state in an induced-fit mechanism
-
Fersht, A. R., Knill-Jones, J. W., Bedouelle, H., and Winter, G. (1988) Reconstruction by site-directed mutagenesis of the transition state for the activation of tyrosine by the tyrosyl-tRNA synthetase: A mobile loop envelopes the transition state in an induced-fit mechanism Biochemistry 27, 1581-1587
-
(1988)
Biochemistry
, vol.27
, pp. 1581-1587
-
-
Fersht, A.R.1
Knill-Jones, J.W.2
Bedouelle, H.3
Winter, G.4
-
118
-
-
0035875882
-
A succession of substrate induced conformational changes ensures the amino acid specificity of Thermus thermophilus prolyl-tRNA synthetase: Comparison with histidyl-tRNA synthetase
-
Yaremchuk, A., Tukalo, M., Grotli, M., and Cusack, S. (2001) A succession of substrate induced conformational changes ensures the amino acid specificity of Thermus thermophilus prolyl-tRNA synthetase: Comparison with histidyl-tRNA synthetase J. Mol. Biol. 309, 989-1002
-
(2001)
J. Mol. Biol.
, vol.309
, pp. 989-1002
-
-
Yaremchuk, A.1
Tukalo, M.2
Grotli, M.3
Cusack, S.4
-
119
-
-
0032169440
-
Crystal structure of aspartyl-tRNA synthetase from Pyrococcus kodakaraensis KOD: Archaeon specificity and catalytic mechanism of adenylate formation
-
Schmitt, E., Moulinier, L., Fujiwara, S., Imanaka, T., Thierry, J. C., and Moras, D. (1998) Crystal structure of aspartyl-tRNA synthetase from Pyrococcus kodakaraensis KOD: Archaeon specificity and catalytic mechanism of adenylate formation EMBO J. 17, 5227-5237
-
(1998)
EMBO J.
, vol.17
, pp. 5227-5237
-
-
Schmitt, E.1
Moulinier, L.2
Fujiwara, S.3
Imanaka, T.4
Thierry, J.C.5
Moras, D.6
-
120
-
-
0027165755
-
Structural basis for transfer RNA aminoacylation by Escherichia coli glutaminyl-tRNA synthetase
-
Perona, J. J., Rould, M. A., and Steitz, T. A. (1993) Structural basis for transfer RNA aminoacylation by Escherichia coli glutaminyl-tRNA synthetase Biochemistry 32, 8758-8771
-
(1993)
Biochemistry
, vol.32
, pp. 8758-8771
-
-
Perona, J.J.1
Rould, M.A.2
Steitz, T.A.3
-
121
-
-
14844357908
-
A substrate-assisted concerted mechanism for aminoacylation by a class II aminoacyl-tRNA synthetase
-
Guth, E., Connolly, S. H., Bovee, M., and Francklyn, C. S. (2005) A substrate-assisted concerted mechanism for aminoacylation by a class II aminoacyl-tRNA synthetase Biochemistry 44, 3785-3794
-
(2005)
Biochemistry
, vol.44
, pp. 3785-3794
-
-
Guth, E.1
Connolly, S.H.2
Bovee, M.3
Francklyn, C.S.4
-
122
-
-
58149142798
-
Substrate-assisted catalysis in the aminoacyl transfer mechanism of histidyl-tRNA synthetase: A density functional theory study
-
Liu, H. and Gauld, J. W. (2008) Substrate-assisted catalysis in the aminoacyl transfer mechanism of histidyl-tRNA synthetase: A density functional theory study J. Phys. Chem. B 112, 16874-16882
-
(2008)
J. Phys. Chem. B
, vol.112
, pp. 16874-16882
-
-
Liu, H.1
Gauld, J.W.2
-
123
-
-
56649088287
-
RNA-assisted catalysis in a protein enzyme: The 2′-hydroxyl of tRNA(Thr) A76 promotes aminoacylation by threonyl-tRNA synthetase
-
Minajigi, A. and Francklyn, C. S. (2008) RNA-assisted catalysis in a protein enzyme: The 2′-hydroxyl of tRNA(Thr) A76 promotes aminoacylation by threonyl-tRNA synthetase Proc. Natl. Acad. Sci. U.S.A. 105, 17748-17753
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 17748-17753
-
-
Minajigi, A.1
Francklyn, C.S.2
-
124
-
-
0017326738
-
Editing mechanisms in protein synthesis. Rejection of valine by the isoleucyl-tRNA synthetase
-
Fersht, A. R. (1977) Editing mechanisms in protein synthesis. Rejection of valine by the isoleucyl-tRNA synthetase Biochemistry 16, 1025-1030
-
(1977)
Biochemistry
, vol.16
, pp. 1025-1030
-
-
Fersht, A.R.1
-
125
-
-
0019844454
-
Probing the principles of amino acid selection using the alanyl-tRNA synthetase from Escherichia coli
-
Tsui, W. C. and Fersht, A. R. (1981) Probing the principles of amino acid selection using the alanyl-tRNA synthetase from Escherichia coli Nucleic Acids Res. 9, 4627-4637
-
(1981)
Nucleic Acids Res.
, vol.9
, pp. 4627-4637
-
-
Tsui, W.C.1
Fersht, A.R.2
-
126
-
-
10644277147
-
Post-transfer editing in vitro and in vivo by the β subunit of phenylalanyl-tRNA synthetase
-
Roy, H., Ling, J., Irnov, M., and Ibba, M. (2004) Post-transfer editing in vitro and in vivo by the β subunit of phenylalanyl-tRNA synthetase EMBO J. 23, 4639-4648
-
(2004)
EMBO J.
, vol.23
, pp. 4639-4648
-
-
Roy, H.1
Ling, J.2
Irnov, M.3
Ibba, M.4
-
127
-
-
28844461982
-
Structural basis for discrimination of l -phenylalanine from l -tyrosine by phenylalanyl-tRNA synthetase
-
Kotik-Kogan, O., Moor, N., Tworowski, D., and Safro, M. (2005) Structural basis for discrimination of l -phenylalanine from l -tyrosine by phenylalanyl-tRNA synthetase Structure 13, 1799-1807
-
(2005)
Structure
, vol.13
, pp. 1799-1807
-
-
Kotik-Kogan, O.1
Moor, N.2
Tworowski, D.3
Safro, M.4
-
128
-
-
72049087000
-
Paradox of mistranslation of serine for alanine caused by AlaRS recognition dilemma
-
Guo, M., Chong, Y. E., Shapiro, R., Beebe, K., Yang, X. L., and Schimmel, P. (2009) Paradox of mistranslation of serine for alanine caused by AlaRS recognition dilemma Nature 462, 808-812
-
(2009)
Nature
, vol.462
, pp. 808-812
-
-
Guo, M.1
Chong, Y.E.2
Shapiro, R.3
Beebe, K.4
Yang, X.L.5
Schimmel, P.6
-
129
-
-
79952160988
-
Substrate specificity and catalysis by the editing active site of alanyl-tRNA synthetase from Escherichia coli
-
Pasman, Z., Robey-Bond, S., Mirando, A. C., Smith, G. J., Lague, A., and Francklyn, C. S. (2011) Substrate specificity and catalysis by the editing active site of alanyl-tRNA synthetase from Escherichia coli Biochemistry 50, 1474-1482
-
(2011)
Biochemistry
, vol.50
, pp. 1474-1482
-
-
Pasman, Z.1
Robey-Bond, S.2
Mirando, A.C.3
Smith, G.J.4
Lague, A.5
Francklyn, C.S.6
-
130
-
-
67650477051
-
The structure of alanyl-tRNA synthetase with editing domain
-
Sokabe, M., Ose, T., Nakamura, A., Tokunaga, K., Nureki, O., Yao, M., and Tanaka, I. (2009) The structure of alanyl-tRNA synthetase with editing domain Proc. Natl. Acad. Sci. U.S.A. 106, 11028-11033
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 11028-11033
-
-
Sokabe, M.1
Ose, T.2
Nakamura, A.3
Tokunaga, K.4
Nureki, O.5
Yao, M.6
Tanaka, I.7
-
131
-
-
33947302386
-
Structure of the AlaX-M trans-editing enzyme from Pyrococcus horikoshii
-
Fukunaga, R. and Yokoyama, S. (2007) Structure of the AlaX-M trans-editing enzyme from Pyrococcus horikoshii Acta Crystallogr. D63, 390-400
-
(2007)
Acta Crystallogr.
, vol.63
, pp. 390-400
-
-
Fukunaga, R.1
Yokoyama, S.2
-
132
-
-
21244439199
-
TRNA-dependent aminoacyl-adenylate hydrolysis by a nonediting class i aminoacyl-tRNA synthetase
-
Gruic-Sovulj, I., Uter, N., Bullock, T., and Perona, J. J. (2005) tRNA-dependent aminoacyl-adenylate hydrolysis by a nonediting class I aminoacyl-tRNA synthetase J. Biol. Chem. 280, 23978-23986
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 23978-23986
-
-
Gruic-Sovulj, I.1
Uter, N.2
Bullock, T.3
Perona, J.J.4
-
133
-
-
84868581009
-
Rational design and directed evolution of a bacterial-type glutaminyl-tRNA synthetase precursor
-
Guo, L. T., Helgadottir, S., Soll, D., and Ling, J. (2012) Rational design and directed evolution of a bacterial-type glutaminyl-tRNA synthetase precursor Nucleic Acids Res. 40, 7967-7974
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 7967-7974
-
-
Guo, L.T.1
Helgadottir, S.2
Soll, D.3
Ling, J.4
-
134
-
-
0033548581
-
Glycyl-tRNA synthetase uses a negatively charged pit for specific recognition and activation of glycine
-
Arnez, J. G., Dock-Bregeon, A. C., and Moras, D. (1999) Glycyl-tRNA synthetase uses a negatively charged pit for specific recognition and activation of glycine J. Mol. Biol. 286, 1449-1459
-
(1999)
J. Mol. Biol.
, vol.286
, pp. 1449-1459
-
-
Arnez, J.G.1
Dock-Bregeon, A.C.2
Moras, D.3
-
135
-
-
0032522422
-
How glutaminyl-tRNA synthetase selects glutamine
-
Rath, V. L., Silvian, L. F., Beijer, B., Sproat, B. S., and Steitz, T. A. (1998) How glutaminyl-tRNA synthetase selects glutamine Structure 6, 439-449
-
(1998)
Structure
, vol.6
, pp. 439-449
-
-
Rath, V.L.1
Silvian, L.F.2
Beijer, B.3
Sproat, B.S.4
Steitz, T.A.5
-
136
-
-
0037466332
-
Amino acid discrimination by a class i aminoacyl-tRNA synthetase specified by negative determinants
-
Bullock, T. L., Uter, N., Nissan, T. A., and Perona, J. J. (2003) Amino acid discrimination by a class I aminoacyl-tRNA synthetase specified by negative determinants J. Mol. Biol. 328, 395-408
-
(2003)
J. Mol. Biol.
, vol.328
, pp. 395-408
-
-
Bullock, T.L.1
Uter, N.2
Nissan, T.A.3
Perona, J.J.4
-
137
-
-
60749103884
-
Architectural underpinnings of the genetic code for glutamine
-
Corigliano, E. M. and Perona, J. J. (2009) Architectural underpinnings of the genetic code for glutamine Biochemistry 48, 676-687
-
(2009)
Biochemistry
, vol.48
, pp. 676-687
-
-
Corigliano, E.M.1
Perona, J.J.2
-
138
-
-
79952458765
-
Heat maps for intramolecular communication in an RNP enzyme encoding glutamine
-
Rodriguez-Hernandez, A. and Perona, J. J. (2011) Heat maps for intramolecular communication in an RNP enzyme encoding glutamine Structure 19, 386-396
-
(2011)
Structure
, vol.19
, pp. 386-396
-
-
Rodriguez-Hernandez, A.1
Perona, J.J.2
-
139
-
-
34548690780
-
Indirect readout of tRNA for aminoacylation
-
Perona, J. J. and Hou, Y. M. (2007) Indirect readout of tRNA for aminoacylation Biochemistry 46, 10419-10432
-
(2007)
Biochemistry
, vol.46
, pp. 10419-10432
-
-
Perona, J.J.1
Hou, Y.M.2
-
140
-
-
27144477810
-
The crystal structure of leucyl-tRNA synthetase complexed with tRNALeu in the post-transfer-editing conformation
-
Tukalo, M., Yaremchuk, A., Fukunaga, R., Yokoyama, S., and Cusack, S. (2005) The crystal structure of leucyl-tRNA synthetase complexed with tRNALeu in the post-transfer-editing conformation Nat. Struct. Mol. Biol. 12, 923-930
-
(2005)
Nat. Struct. Mol. Biol.
, vol.12
, pp. 923-930
-
-
Tukalo, M.1
Yaremchuk, A.2
Fukunaga, R.3
Yokoyama, S.4
Cusack, S.5
-
141
-
-
0027208742
-
Identity determinants of human tRNA(Ser): Sequence elements necessary for serylation and maturation of a tRNA with a long extra arm
-
Achsel, T. and Gross, H. J. (1993) Identity determinants of human tRNA(Ser): Sequence elements necessary for serylation and maturation of a tRNA with a long extra arm EMBO J. 12, 3333-3338
-
(1993)
EMBO J.
, vol.12
, pp. 3333-3338
-
-
Achsel, T.1
Gross, H.J.2
-
142
-
-
3643114575
-
Universal rules and idiosyncratic features in tRNA identity
-
Giege, R., Sissler, M., and Florentz, C. (1998) Universal rules and idiosyncratic features in tRNA identity Nucleic Acids Res. 26, 5017-5035
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 5017-5035
-
-
Giege, R.1
Sissler, M.2
Florentz, C.3
-
143
-
-
0003695480
-
Transfer RNA recognition by aminoacyl-tRNA synthetases
-
Beuning, P. J. and Musier-Forsyth, K. (1999) Transfer RNA recognition by aminoacyl-tRNA synthetases Biopolymers 52, 1-28
-
(1999)
Biopolymers
, vol.52
, pp. 1-28
-
-
Beuning, P.J.1
Musier-Forsyth, K.2
-
144
-
-
0027273985
-
A 2-thiouridine derivative in tRNAGlu is a positive determinant for aminoacylation by Escherichia coli glutamyl-tRNA synthetase
-
Sylvers, L. A., Rogers, K. C., Shimizu, M., Ohtsuka, E., and Soll, D. (1993) A 2-thiouridine derivative in tRNAGlu is a positive determinant for aminoacylation by Escherichia coli glutamyl-tRNA synthetase Biochemistry 32, 3836-3841
-
(1993)
Biochemistry
, vol.32
, pp. 3836-3841
-
-
Sylvers, L.A.1
Rogers, K.C.2
Shimizu, M.3
Ohtsuka, E.4
Soll, D.5
-
145
-
-
0023734317
-
Codon and amino-acid specificities of a transfer RNA are both converted by a single post-transcriptional modification
-
Muramatsu, T., Nishikawa, K., Nemoto, F., Kuchino, Y., Nishimura, S., Miyazawa, T., and Yokoyama, S. (1988) Codon and amino-acid specificities of a transfer RNA are both converted by a single post-transcriptional modification Nature 336, 179-181
-
(1988)
Nature
, vol.336
, pp. 179-181
-
-
Muramatsu, T.1
Nishikawa, K.2
Nemoto, F.3
Kuchino, Y.4
Nishimura, S.5
Miyazawa, T.6
Yokoyama, S.7
-
146
-
-
0028508568
-
A single methyl group prevents the mischarging of a tRNA
-
Putz, J., Florentz, C., Benseler, F., and Giege, R. (1994) A single methyl group prevents the mischarging of a tRNA Nat. Struct. Biol. 1, 580-582
-
(1994)
Nat. Struct. Biol.
, vol.1
, pp. 580-582
-
-
Putz, J.1
Florentz, C.2
Benseler, F.3
Giege, R.4
-
147
-
-
0024284965
-
A simple structural feature is a major determinant of the identity of a transfer RNA
-
Hou, Y. M. and Schimmel, P. (1988) A simple structural feature is a major determinant of the identity of a transfer RNA Nature 333, 140-145
-
(1988)
Nature
, vol.333
, pp. 140-145
-
-
Hou, Y.M.1
Schimmel, P.2
-
148
-
-
0024412109
-
Molecular dissection of a transfer RNA and the basis for its identity
-
Hou, Y. M., Francklyn, C., and Schimmel, P. (1989) Molecular dissection of a transfer RNA and the basis for its identity Trends Biochem. Sci. 14, 233-237
-
(1989)
Trends Biochem. Sci.
, vol.14
, pp. 233-237
-
-
Hou, Y.M.1
Francklyn, C.2
Schimmel, P.3
-
149
-
-
0027764213
-
Discrimination among tRNAs intermediate in glutamate and glutamine acceptor identity
-
Rogers, K. C. and Soll, D. (1993) Discrimination among tRNAs intermediate in glutamate and glutamine acceptor identity Biochemistry 32, 14210-14219
-
(1993)
Biochemistry
, vol.32
, pp. 14210-14219
-
-
Rogers, K.C.1
Soll, D.2
-
150
-
-
0028129393
-
Identity switches between tRNAs aminoacylated by class i glutaminyl- and class II aspartyl-tRNA synthetases
-
Frugier, M., Soll, D., Giege, R., and Florentz, C. (1994) Identity switches between tRNAs aminoacylated by class I glutaminyl- and class II aspartyl-tRNA synthetases Biochemistry 33, 9912-9921
-
(1994)
Biochemistry
, vol.33
, pp. 9912-9921
-
-
Frugier, M.1
Soll, D.2
Giege, R.3
Florentz, C.4
-
151
-
-
84855503868
-
Rational design of an evolutionary precursor of glutaminyl-tRNA synthetase
-
O'Donoghue, P., Sheppard, K., Nureki, O., and Soll, D. (2011) Rational design of an evolutionary precursor of glutaminyl-tRNA synthetase Proc. Natl. Acad. Sci. U.S.A. 108, 20485-20490
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 20485-20490
-
-
O'Donoghue, P.1
Sheppard, K.2
Nureki, O.3
Soll, D.4
-
152
-
-
0034687763
-
Evolutionary coadaptation of the motif 2-acceptor stem interaction in the class II prolyl-tRNA synthetase system
-
Burke, B., Yang, F., Chen, F., Stehlin, C., Chan, B., and Musier-Forsyth, K. (2000) Evolutionary coadaptation of the motif 2-acceptor stem interaction in the class II prolyl-tRNA synthetase system Biochemistry 39, 15540-15547
-
(2000)
Biochemistry
, vol.39
, pp. 15540-15547
-
-
Burke, B.1
Yang, F.2
Chen, F.3
Stehlin, C.4
Chan, B.5
Musier-Forsyth, K.6
-
153
-
-
0036315368
-
Recognition of tRNA backbone for aminoacylation with cysteine: Evolution from Escherichia coli to human
-
Ming, X., Smith, K., Suga, H., and Hou, Y. M. (2002) Recognition of tRNA backbone for aminoacylation with cysteine: Evolution from Escherichia coli to human J. Mol. Biol. 318, 1207-1220
-
(2002)
J. Mol. Biol.
, vol.318
, pp. 1207-1220
-
-
Ming, X.1
Smith, K.2
Suga, H.3
Hou, Y.M.4
-
154
-
-
79953706300
-
Change of tRNA identity leads to a divergent orthogonal histidyl-tRNA synthetase/tRNAHis pair
-
Yuan, J., Gogakos, T., Babina, A. M., Soll, D., and Randau, L. (2011) Change of tRNA identity leads to a divergent orthogonal histidyl-tRNA synthetase/tRNAHis pair Nucleic Acids Res. 39, 2286-2293
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 2286-2293
-
-
Yuan, J.1
Gogakos, T.2
Babina, A.M.3
Soll, D.4
Randau, L.5
-
155
-
-
3943088436
-
Incorporation of nonnatural amino acids into proteins
-
Hendrickson, T. L., de Crecy-Lagard, V., and Schimmel, P. (2004) Incorporation of nonnatural amino acids into proteins Annu. Rev. Biochem. 73, 147-176
-
(2004)
Annu. Rev. Biochem.
, vol.73
, pp. 147-176
-
-
Hendrickson, T.L.1
De Crecy-Lagard, V.2
Schimmel, P.3
-
156
-
-
0032557640
-
Efficient introduction of alkene functionality into proteins in vivo
-
van Hest, J. C. and Tirrell, D. A. (1998) Efficient introduction of alkene functionality into proteins in vivo FEBS Lett. 428, 68-70
-
(1998)
FEBS Lett.
, vol.428
, pp. 68-70
-
-
Van Hest, J.C.1
Tirrell, D.A.2
-
157
-
-
0025262173
-
Selenomethionyl proteins produced for analysis by multiwavelength anomalous diffraction (MAD): A vehicle for direct determination of three-dimensional structure
-
Hendrickson, W. A., Horton, J. R., and LeMaster, D. M. (1990) Selenomethionyl proteins produced for analysis by multiwavelength anomalous diffraction (MAD): A vehicle for direct determination of three-dimensional structure EMBO J. 9, 1665-1672
-
(1990)
EMBO J.
, vol.9
, pp. 1665-1672
-
-
Hendrickson, W.A.1
Horton, J.R.2
Lemaster, D.M.3
-
158
-
-
0036523420
-
Biosynthesis of proteins incorporating a versatile set of phenylalanine analogues
-
Kirshenbaum, K., Carrico, I. S., and Tirrell, D. A. (2002) Biosynthesis of proteins incorporating a versatile set of phenylalanine analogues ChemBioChem 3, 235-237
-
(2002)
ChemBioChem
, vol.3
, pp. 235-237
-
-
Kirshenbaum, K.1
Carrico, I.S.2
Tirrell, D.A.3
-
159
-
-
0035917804
-
Enlarging the amino acid set of Escherichia coli by infiltration of the valine coding pathway
-
Doring, V., Mootz, H. D., Nangle, L. A., Hendrickson, T. L., de Crecy-Lagard, V., Schimmel, P., and Marliere, P. (2001) Enlarging the amino acid set of Escherichia coli by infiltration of the valine coding pathway Science 292, 501-504
-
(2001)
Science
, vol.292
, pp. 501-504
-
-
Doring, V.1
Mootz, H.D.2
Nangle, L.A.3
Hendrickson, T.L.4
De Crecy-Lagard, V.5
Schimmel, P.6
Marliere, P.7
-
160
-
-
79851491498
-
Fidelity escape by the unnatural amino acid β-hydroxynorvaline: An efficient substrate for Escherichia coli threonyl-tRNA synthetase with toxic effects on growth
-
Minajigi, A., Deng, B., and Francklyn, C. S. (2011) Fidelity escape by the unnatural amino acid β-hydroxynorvaline: An efficient substrate for Escherichia coli threonyl-tRNA synthetase with toxic effects on growth Biochemistry 50, 1101-1109
-
(2011)
Biochemistry
, vol.50
, pp. 1101-1109
-
-
Minajigi, A.1
Deng, B.2
Francklyn, C.S.3
-
161
-
-
0035917812
-
Expanding the genetic code of Escherichia coli
-
Wang, L., Brock, A., Herberich, B., and Schultz, P. G. (2001) Expanding the genetic code of Escherichia coli Science 292, 498-500
-
(2001)
Science
, vol.292
, pp. 498-500
-
-
Wang, L.1
Brock, A.2
Herberich, B.3
Schultz, P.G.4
-
162
-
-
0034833416
-
A general approach for the generation of orthogonal tRNAs
-
Wang, L. and Schultz, P. G. (2001) A general approach for the generation of orthogonal tRNAs Chem. Biol. 8, 883-890
-
(2001)
Chem. Biol.
, vol.8
, pp. 883-890
-
-
Wang, L.1
Schultz, P.G.2
-
163
-
-
84863633972
-
Rewiring translation: Genetic code expansion and its applications
-
Neumann, H. (2012) Rewiring translation: Genetic code expansion and its applications FEBS Lett. 586, 2057-2064
-
(2012)
FEBS Lett.
, vol.586
, pp. 2057-2064
-
-
Neumann, H.1
-
164
-
-
0041520960
-
An expanded eukaryotic genetic code
-
Chin, J. W., Cropp, T. A., Anderson, J. C., Mukherji, M., Zhang, Z., and Schultz, P. G. (2003) An expanded eukaryotic genetic code Science 301, 964-967
-
(2003)
Science
, vol.301
, pp. 964-967
-
-
Chin, J.W.1
Cropp, T.A.2
Anderson, J.C.3
Mukherji, M.4
Zhang, Z.5
Schultz, P.G.6
-
165
-
-
70849107146
-
Retraction
-
Zhang, Z., Gildersleeve, J., Yang, Y. Y., Xu, R., Loo, J. A., Uryu, S., Wong, C. H., and Schultz, P. G. (2009) Retraction Science 326, 1187
-
(2009)
Science
, vol.326
, pp. 1187
-
-
Zhang, Z.1
Gildersleeve, J.2
Yang, Y.Y.3
Xu, R.4
Loo, J.A.5
Uryu, S.6
Wong, C.H.7
Schultz, P.G.8
-
166
-
-
44149083513
-
Adding l -lysine derivatives to the genetic code of mammalian cells with engineered pyrrolysyl-tRNA synthetases
-
Mukai, T., Kobayashi, T., Hino, N., Yanagisawa, T., Sakamoto, K., and Yokoyama, S. (2008) Adding l -lysine derivatives to the genetic code of mammalian cells with engineered pyrrolysyl-tRNA synthetases Biochem. Biophys. Res. Commun. 371, 818-822
-
(2008)
Biochem. Biophys. Res. Commun.
, vol.371
, pp. 818-822
-
-
Mukai, T.1
Kobayashi, T.2
Hino, N.3
Yanagisawa, T.4
Sakamoto, K.5
Yokoyama, S.6
-
167
-
-
7744222751
-
A genetically encoded photocaged amino acid
-
Wu, N., Deiters, A., Cropp, T. A., King, D., and Schultz, P. G. (2004) A genetically encoded photocaged amino acid J. Am. Chem. Soc. 126, 14306-14307
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 14306-14307
-
-
Wu, N.1
Deiters, A.2
Cropp, T.A.3
King, D.4
Schultz, P.G.5
-
168
-
-
2442659130
-
An expanded genetic code with a functional quadruplet codon
-
Anderson, J. C., Wu, N., Santoro, S. W., Lakshman, V., King, D. S., and Schultz, P. G. (2004) An expanded genetic code with a functional quadruplet codon Proc. Natl. Acad. Sci. U.S.A. 101, 7566-7571
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 7566-7571
-
-
Anderson, J.C.1
Wu, N.2
Santoro, S.W.3
Lakshman, V.4
King, D.S.5
Schultz, P.G.6
-
169
-
-
79952778732
-
An evolved aminoacyl-tRNA synthetase with atypical polysubstrate specificity
-
Young, D. D., Young, T. S., Jahnz, M., Ahmad, I., Spraggon, G., and Schultz, P. G. (2011) An evolved aminoacyl-tRNA synthetase with atypical polysubstrate specificity Biochemistry 50, 1894-1900
-
(2011)
Biochemistry
, vol.50
, pp. 1894-1900
-
-
Young, D.D.1
Young, T.S.2
Jahnz, M.3
Ahmad, I.4
Spraggon, G.5
Schultz, P.G.6
-
170
-
-
17744373680
-
Crystal structures of apo wild-type M. jannaschii tyrosyl-tRNA synthetase (TyrRS) and an engineered TyrRS specific for O-methyl- l -tyrosine
-
Zhang, Y., Wang, L., Schultz, P. G., and Wilson, I. A. (2005) Crystal structures of apo wild-type M. jannaschii tyrosyl-tRNA synthetase (TyrRS) and an engineered TyrRS specific for O-methyl- l -tyrosine Protein Sci. 14, 1340-1349
-
(2005)
Protein Sci.
, vol.14
, pp. 1340-1349
-
-
Zhang, Y.1
Wang, L.2
Schultz, P.G.3
Wilson, I.A.4
-
171
-
-
33646256352
-
Structural plasticity of an aminoacyl-tRNA synthetase active site
-
Turner, J. M., Graziano, J., Spraggon, G., and Schultz, P. G. (2006) Structural plasticity of an aminoacyl-tRNA synthetase active site Proc. Natl. Acad. Sci. U.S.A. 103, 6483-6488
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 6483-6488
-
-
Turner, J.M.1
Graziano, J.2
Spraggon, G.3
Schultz, P.G.4
-
172
-
-
37349066767
-
A genetically encoded bidentate metal-binding amino acid
-
Xie, J., Liu, W, and Schultz, P. G. (2007) A genetically encoded bidentate metal-binding amino acid Angew. Chem., Int. Ed. 46, 9239-9242
-
(2007)
Angew. Chem., Int. Ed.
, vol.46
, pp. 9239-9242
-
-
Xie, J.1
Liu, W.2
Schultz, P.G.3
-
173
-
-
84859498501
-
Performance analysis of orthogonal pairs designed for an expanded eukaryotic genetic code
-
Nehring, S., Budisa, N., and Wiltschi, B. (2012) Performance analysis of orthogonal pairs designed for an expanded eukaryotic genetic code PLoS One 7, e31992
-
(2012)
PLoS One
, vol.7
, pp. 31992
-
-
Nehring, S.1
Budisa, N.2
Wiltschi, B.3
-
174
-
-
77749277693
-
Generating permissive site-specific unnatural aminoacyl-tRNA synthetases
-
Miyake-Stoner, S. J., Refakis, C. A., Hammill, J. T., Lusic, H., Hazen,
-
(2010)
Biochemistry
, vol.49
, pp. 1667-1677
-
-
Miyake-Stoner, S.J.1
Refakis, C.A.2
Hammill, J.T.3
Lusic, H.4
Hazen, J.L.5
Deiters, A.6
Mehl, R.A.7
-
175
-
-
0037197259
-
Modulation of tRNAAla identity by inorganic pyrophosphatase
-
Wolfson, A. D. and Uhlenbeck, O. C. (2002) Modulation of tRNAAla identity by inorganic pyrophosphatase Proc. Natl. Acad. Sci. U.S.A. 99, 5965-5970
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 5965-5970
-
-
Wolfson, A.D.1
Uhlenbeck, O.C.2
-
176
-
-
38649136232
-
Methods for kinetic and thermodynamic analysis of aminoacyl-tRNA synthetases
-
Francklyn, C. S., First, E. A., Perona, J. J., and Hou, Y. M. (2008) Methods for kinetic and thermodynamic analysis of aminoacyl-tRNA synthetases Methods 44, 100-118
-
(2008)
Methods
, vol.44
, pp. 100-118
-
-
Francklyn, C.S.1
First, E.A.2
Perona, J.J.3
Hou, Y.M.4
-
177
-
-
5144223811
-
Long-range intramolecular signaling in a tRNA synthetase complex revealed by pre-steady-state kinetics
-
Uter, N. T. and Perona, J. J. (2004) Long-range intramolecular signaling in a tRNA synthetase complex revealed by pre-steady-state kinetics Proc. Natl. Acad. Sci. U.S.A. 101, 14396-14401
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 14396-14401
-
-
Uter, N.T.1
Perona, J.J.2
-
178
-
-
84864088342
-
Kinetic partitioning between synthetic and editing pathways in class i aminoacyl-tRNA synthetases occurs at both pre-transfer and post-transfer hydrolytic steps
-
Cvetesic, N., Perona, J. J., and Gruic-Sovulj, I. (2012) Kinetic partitioning between synthetic and editing pathways in class I aminoacyl-tRNA synthetases occurs at both pre-transfer and post-transfer hydrolytic steps J. Biol. Chem. 287, 25381
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 25381
-
-
Cvetesic, N.1
Perona, J.J.2
Gruic-Sovulj, I.3
-
179
-
-
21244444325
-
Amino acid-dependent transfer RNA affinity in a class i aminoacyl-tRNA synthetase
-
Uter, N. T., Gruic-Sovulj, I., and Perona, J. J. (2005) Amino acid-dependent transfer RNA affinity in a class I aminoacyl-tRNA synthetase J. Biol. Chem. 280, 23966-23977
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 23966-23977
-
-
Uter, N.T.1
Gruic-Sovulj, I.2
Perona, J.J.3
-
180
-
-
0015885054
-
Factors determining the specificity of the tRNA aminoacylation reaction. Non-absolute specificity of tRNA-aminoacyl-tRNA synthetase recognition and particular importance of the maximal velocity
-
Ebel, J. P., Giege, R., Bonnet, J., Kern, D., Befort, N., Bollack, C., Fasiolo, F., Gangloff, J., and Dirheimer, G. (1973) Factors determining the specificity of the tRNA aminoacylation reaction. Non-absolute specificity of tRNA-aminoacyl-tRNA synthetase recognition and particular importance of the maximal velocity Biochimie 55, 547-557
-
(1973)
Biochimie
, vol.55
, pp. 547-557
-
-
Ebel, J.P.1
Giege, R.2
Bonnet, J.3
Kern, D.4
Befort, N.5
Bollack, C.6
Fasiolo, F.7
Gangloff, J.8
Dirheimer, G.9
-
181
-
-
0033784534
-
Induced fit in RNA-protein recognition
-
Williamson, J. R. (2000) Induced fit in RNA-protein recognition Nat. Struct. Biol. 7, 834-837
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 834-837
-
-
Williamson, J.R.1
-
182
-
-
0028839740
-
Reexamination of induced fit as a determinant of substrate specificity in enzymatic reactions
-
Post, C. B. and Ray, W. J., Jr. (1995) Reexamination of induced fit as a determinant of substrate specificity in enzymatic reactions Biochemistry 34, 15881-15885
-
(1995)
Biochemistry
, vol.34
, pp. 15881-15885
-
-
Post, C.B.1
Ray Jr., W.J.2
-
183
-
-
0026672693
-
Recognition of bases in Escherichia coli tRNA(Gln) by glutaminyl-tRNA synthetase: A complete identity set
-
Hayase, Y., Jahn, M., Rogers, M. J., Sylvers, L. A., Koizumi, M., Inoue, H., Ohtsuka, E., and Soll, D. (1992) Recognition of bases in Escherichia coli tRNA(Gln) by glutaminyl-tRNA synthetase: A complete identity set EMBO J. 11, 4159-4165
-
(1992)
EMBO J.
, vol.11
, pp. 4159-4165
-
-
Hayase, Y.1
Jahn, M.2
Rogers, M.J.3
Sylvers, L.A.4
Koizumi, M.5
Inoue, H.6
Ohtsuka, E.7
Soll, D.8
-
184
-
-
84862936132
-
Adaptation to tRNA acceptor stem structure by flexible adjustment in the catalytic domain of class i tRNA synthetases
-
Liu, C., Sanders, J. M., Pascal, J. M., and Hou, Y. M. (2012) Adaptation to tRNA acceptor stem structure by flexible adjustment in the catalytic domain of class I tRNA synthetases RNA 18, 213-221
-
(2012)
RNA
, vol.18
, pp. 213-221
-
-
Liu, C.1
Sanders, J.M.2
Pascal, J.M.3
Hou, Y.M.4
-
185
-
-
43249105572
-
Aminoacylation of tRNA with phosphoserine for synthesis of cysteinyl-tRNA(Cys)
-
Zhang, C. M., Liu, C., Slater, S., and Hou, Y. M. (2008) Aminoacylation of tRNA with phosphoserine for synthesis of cysteinyl-tRNA(Cys) Nat. Struct. Mol. Biol. 15, 507-514
-
(2008)
Nat. Struct. Mol. Biol.
, vol.15
, pp. 507-514
-
-
Zhang, C.M.1
Liu, C.2
Slater, S.3
Hou, Y.M.4
-
186
-
-
33847023388
-
Kinetic discrimination of tRNA identity by the conserved motif 2 loop of a class II aminoacyl-tRNA synthetase
-
Guth, E. C. and Francklyn, C. S. (2007) Kinetic discrimination of tRNA identity by the conserved motif 2 loop of a class II aminoacyl-tRNA synthetase Mol. Cell 25, 531-542
-
(2007)
Mol. Cell
, vol.25
, pp. 531-542
-
-
Guth, E.C.1
Francklyn, C.S.2
-
187
-
-
66149086947
-
Dynamical networks in tRNA:protein complexes
-
Sethi, A., Eargle, J., Black, A. A., and Luthey-Schulten, Z. (2009) Dynamical networks in tRNA:protein complexes Proc. Natl. Acad. Sci. U.S.A. 106, 6620-6625
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 6620-6625
-
-
Sethi, A.1
Eargle, J.2
Black, A.A.3
Luthey-Schulten, Z.4
-
188
-
-
77949907106
-
Allostery and conformational free energy changes in human tryptophanyl-tRNA synthetase from essential dynamics and structure networks
-
Bhattacharyya, M., Ghosh, A., Hansia, P., and Vishveshwara, S. (2010) Allostery and conformational free energy changes in human tryptophanyl-tRNA synthetase from essential dynamics and structure networks Proteins 78, 506-517
-
(2010)
Proteins
, vol.78
, pp. 506-517
-
-
Bhattacharyya, M.1
Ghosh, A.2
Hansia, P.3
Vishveshwara, S.4
-
189
-
-
84862909573
-
2+-assisted catalysis to domain motion in B. stearothermophilus tryptophanyl-tRNA synthetase
-
2+-assisted catalysis to domain motion in B. stearothermophilus tryptophanyl-tRNA synthetase Structure 20, 128-138
-
(2012)
Structure
, vol.20
, pp. 128-138
-
-
Weinreb, V.1
Li, L.2
Carter Jr., C.W.3
-
190
-
-
35148862718
-
A conformational transition state accompanies tryptophan activation by B. stearothermophilus tryptophanyl-tRNA synthetase
-
Kapustina, M., Weinreb, V., Li, L., Kuhlman, B., and Carter, C. W., Jr. (2007) A conformational transition state accompanies tryptophan activation by B. stearothermophilus tryptophanyl-tRNA synthetase Structure 15, 1272-1284
-
(2007)
Structure
, vol.15
, pp. 1272-1284
-
-
Kapustina, M.1
Weinreb, V.2
Li, L.3
Kuhlman, B.4
Carter Jr., C.W.5
-
192
-
-
0034692907
-
Correlating amino acid conservation with function in tyrosyl-tRNA synthetase
-
Xin, Y., Li, W., Dwyer, D. S., and First, E. A. (2000) Correlating amino acid conservation with function in tyrosyl-tRNA synthetase J. Mol. Biol. 303, 287-298
-
(2000)
J. Mol. Biol.
, vol.303
, pp. 287-298
-
-
Xin, Y.1
Li, W.2
Dwyer, D.S.3
First, E.A.4
-
193
-
-
0021504608
-
The use of double mutants to detect structural changes in the active site of the tyrosyl-tRNA synthetase (Bacillus stearothermophilus)
-
Carter, P. J., Winter, G., Wilkinson, A. J., and Fersht, A. R. (1984) The use of double mutants to detect structural changes in the active site of the tyrosyl-tRNA synthetase (Bacillus stearothermophilus) Cell 38, 835-840
-
(1984)
Cell
, vol.38
, pp. 835-840
-
-
Carter, P.J.1
Winter, G.2
Wilkinson, A.J.3
Fersht, A.R.4
-
194
-
-
0028902065
-
Analysis of the role of the KMSKS loop in the catalytic mechanism of the tyrosyl-tRNA synthetase using multimutant cycles
-
First, E. A. and Fersht, A. R. (1995) Analysis of the role of the KMSKS loop in the catalytic mechanism of the tyrosyl-tRNA synthetase using multimutant cycles Biochemistry 34, 5030-5043
-
(1995)
Biochemistry
, vol.34
, pp. 5030-5043
-
-
First, E.A.1
Fersht, A.R.2
-
195
-
-
80054804699
-
Allosteric communication in cysteinyl tRNA synthetase: A network of direct and indirect readout
-
Ghosh, A., Sakaguchi, R., Liu, C., Vishveshwara, S., and Hou, Y. M. (2011) Allosteric communication in cysteinyl tRNA synthetase: A network of direct and indirect readout J. Biol. Chem. 286, 37721-37731
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 37721-37731
-
-
Ghosh, A.1
Sakaguchi, R.2
Liu, C.3
Vishveshwara, S.4
Hou, Y.M.5
-
196
-
-
0028275218
-
Connecting anticodon recognition with the active site of Escherichia coli glutaminyl-tRNA synthetase
-
Weygand-Durasevic, I., Rogers, M. J., and Soll, D. (1994) Connecting anticodon recognition with the active site of Escherichia coli glutaminyl-tRNA synthetase J. Mol. Biol. 240, 111-118
-
(1994)
J. Mol. Biol.
, vol.240
, pp. 111-118
-
-
Weygand-Durasevic, I.1
Rogers, M.J.2
Soll, D.3
-
197
-
-
0028058089
-
Functional communication in the recognition of tRNA by Escherichia coli glutaminyl-tRNA synthetase
-
Rogers, M. J., Adachi, T., Inokuchi, H., and Soll, D. (1994) Functional communication in the recognition of tRNA by Escherichia coli glutaminyl-tRNA synthetase Proc. Natl. Acad. Sci. U.S.A. 91, 291-295
-
(1994)
Proc. Natl. Acad. Sci. U.S.A.
, vol.91
, pp. 291-295
-
-
Rogers, M.J.1
Adachi, T.2
Inokuchi, H.3
Soll, D.4
-
198
-
-
0024284958
-
Transfer RNAs: The second genetic code
-
de Duve, C. (1988) Transfer RNAs: The second genetic code Nature 333, 117-118
-
(1988)
Nature
, vol.333
, pp. 117-118
-
-
De Duve, C.1
-
199
-
-
0024276561
-
TRNA identity: A hair of the dogma that bit us
-
Yarus, M. (1988) tRNA identity: A hair of the dogma that bit us Cell 55, 739-741
-
(1988)
Cell
, vol.55
, pp. 739-741
-
-
Yarus, M.1
-
200
-
-
0032508381
-
Switching the amino acid specificity of an aminoacyl-tRNA synthetase
-
Agou, F., Quevillon, S., Kerjan, P., and Mirande, M. (1998) Switching the amino acid specificity of an aminoacyl-tRNA synthetase Biochemistry 37, 11309-11314
-
(1998)
Biochemistry
, vol.37
, pp. 11309-11314
-
-
Agou, F.1
Quevillon, S.2
Kerjan, P.3
Mirande, M.4
-
201
-
-
44949222529
-
A rationally engineered misacylating aminoacyl-tRNA synthetase
-
Bullock, T. L., Rodriguez-Hernandez, A., Corigliano, E. M., and Perona, J. J. (2008) A rationally engineered misacylating aminoacyl-tRNA synthetase Proc. Natl. Acad. Sci. U.S.A. 105, 7428-7433
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 7428-7433
-
-
Bullock, T.L.1
Rodriguez-Hernandez, A.2
Corigliano, E.M.3
Perona, J.J.4
-
202
-
-
0027992228
-
Evolution of the Glx-tRNA synthetase family: The glutaminyl enzyme as a case of horizontal gene transfer
-
Lamour, V., Quevillon, S., Diriong, S., N'Guyen, V. C., Lipinski, M., and Mirande, M. (1994) Evolution of the Glx-tRNA synthetase family: The glutaminyl enzyme as a case of horizontal gene transfer Proc. Natl. Acad. Sci. U.S.A. 91, 8670-8674
-
(1994)
Proc. Natl. Acad. Sci. U.S.A.
, vol.91
, pp. 8670-8674
-
-
Lamour, V.1
Quevillon, S.2
Diriong, S.3
N'Guyen, V.C.4
Lipinski, M.5
Mirande, M.6
-
203
-
-
77955235194
-
Synthesis of Glu-tRNA(Gln) by engineered and natural aminoacyl-tRNA synthetases
-
Rodriguez-Hernandez, A., Bhaskaran, H., Hadd, A., and Perona, J. J. (2010) Synthesis of Glu-tRNA(Gln) by engineered and natural aminoacyl-tRNA synthetases Biochemistry 49, 6727-6736
-
(2010)
Biochemistry
, vol.49
, pp. 6727-6736
-
-
Rodriguez-Hernandez, A.1
Bhaskaran, H.2
Hadd, A.3
Perona, J.J.4
-
204
-
-
0029902187
-
Interactions between tRNA identity nucleotides and their recognition sites in glutaminyl-tRNA synthetase determine the cognate amino acid affinity of the enzyme
-
Ibba, M., Hong, K. W., Sherman, J. M., Sever, S., and Soll, D. (1996) Interactions between tRNA identity nucleotides and their recognition sites in glutaminyl-tRNA synthetase determine the cognate amino acid affinity of the enzyme Proc. Natl. Acad. Sci. U.S.A. 93, 6953-6958
-
(1996)
Proc. Natl. Acad. Sci. U.S.A.
, vol.93
, pp. 6953-6958
-
-
Ibba, M.1
Hong, K.W.2
Sherman, J.M.3
Sever, S.4
Soll, D.5
-
205
-
-
84861904641
-
A Functional Loop Spanning Distant Domains of Glutaminyl-tRNA Synthetase Also Stabilizes a Molten Globule State
-
Saha, R., Dasgupta, S., Banerjee, R., Mitra-Bhattacharyya, A., Soll, D., Basu, G., and Roy, S. (2012) A Functional Loop Spanning Distant Domains of Glutaminyl-tRNA Synthetase Also Stabilizes a Molten Globule State Biochemistry 51, 4429-4437
-
(2012)
Biochemistry
, vol.51
, pp. 4429-4437
-
-
Saha, R.1
Dasgupta, S.2
Banerjee, R.3
Mitra-Bhattacharyya, A.4
Soll, D.5
Basu, G.6
Roy, S.7
-
206
-
-
52949141857
-
Molecular signatures of ribosomal evolution
-
Roberts, E., Sethi, A., Montoya, J., Woese, C. R., and Luthey-Schulten, Z. (2008) Molecular signatures of ribosomal evolution Proc. Natl. Acad. Sci. U.S.A. 105, 13953-13958
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 13953-13958
-
-
Roberts, E.1
Sethi, A.2
Montoya, J.3
Woese, C.R.4
Luthey-Schulten, Z.5
-
207
-
-
0031000512
-
Discrete determinants in transfer RNA for editing and aminoacylation
-
Hale, S. P., Auld, D. S., Schmidt, E., and Schimmel, P. (1997) Discrete determinants in transfer RNA for editing and aminoacylation Science 276, 1250-1252
-
(1997)
Science
, vol.276
, pp. 1250-1252
-
-
Hale, S.P.1
Auld, D.S.2
Schmidt, E.3
Schimmel, P.4
-
208
-
-
79953187583
-
Histidyl-tRNA synthetase urzymes: Class i and II aminoacyl tRNA synthetase urzymes have comparable catalytic activities for cognate amino acid activation
-
Li, L., Weinreb, V., Francklyn, C., and Carter, C. W., Jr. (2011) Histidyl-tRNA synthetase urzymes: Class I and II aminoacyl tRNA synthetase urzymes have comparable catalytic activities for cognate amino acid activation J. Biol. Chem. 286, 10387-10395
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 10387-10395
-
-
Li, L.1
Weinreb, V.2
Francklyn, C.3
Carter Jr., C.W.4
-
209
-
-
78649653834
-
Tryptophanyl-tRNA synthetase Urzyme: A model to recapitulate molecular evolution and investigate intramolecular complementation
-
Pham, Y., Kuhlman, B., Butterfoss, G. L., Hu, H., Weinreb, V., and Carter, C. W., Jr. (2010) Tryptophanyl-tRNA synthetase Urzyme: A model to recapitulate molecular evolution and investigate intramolecular complementation J. Biol. Chem. 285, 38590-38601
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 38590-38601
-
-
Pham, Y.1
Kuhlman, B.2
Butterfoss, G.L.3
Hu, H.4
Weinreb, V.5
Carter Jr., C.W.6
-
210
-
-
0042733155
-
Anticodon recognition in evolution: Switching tRNA specificity of an aminoacyl-tRNA synthetase by site-directed peptide transplantation
-
Brevet, A., Chen, J., Commans, S., Lazennec, C., Blanquet, S., and Plateau, P. (2003) Anticodon recognition in evolution: Switching tRNA specificity of an aminoacyl-tRNA synthetase by site-directed peptide transplantation J. Biol. Chem. 278, 30927-30935
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 30927-30935
-
-
Brevet, A.1
Chen, J.2
Commans, S.3
Lazennec, C.4
Blanquet, S.5
Plateau, P.6
-
211
-
-
0033579427
-
Crystal structure of Escherichia coli methionyl-tRNA synthetase highlights species-specific features
-
Mechulam, Y., Schmitt, E., Maveyraud, L., Zelwer, C., Nureki, O., Yokoyama, S., Konno, M., and Blanquet, S. (1999) Crystal structure of Escherichia coli methionyl-tRNA synthetase highlights species-specific features J. Mol. Biol. 294, 1287-1297
-
(1999)
J. Mol. Biol.
, vol.294
, pp. 1287-1297
-
-
Mechulam, Y.1
Schmitt, E.2
Maveyraud, L.3
Zelwer, C.4
Nureki, O.5
Yokoyama, S.6
Konno, M.7
Blanquet, S.8
-
212
-
-
0043237736
-
Use of analogues of methionine and methionyl adenylate to sample conformational changes during catalysis in Escherichia coli methionyl-tRNA synthetase
-
Crepin, T., Schmitt, E., Mechulam, Y., Sampson, P. B., Vaughan, M. D., Honek, J. F., and Blanquet, S. (2003) Use of analogues of methionine and methionyl adenylate to sample conformational changes during catalysis in Escherichia coli methionyl-tRNA synthetase J. Mol. Biol. 332, 59-72
-
(2003)
J. Mol. Biol.
, vol.332
, pp. 59-72
-
-
Crepin, T.1
Schmitt, E.2
Mechulam, Y.3
Sampson, P.B.4
Vaughan, M.D.5
Honek, J.F.6
Blanquet, S.7
-
213
-
-
79951511871
-
Structure of Leishmania major methionyl-tRNA synthetase in complex with intermediate products methionyladenylate and pyrophosphate
-
Larson, E. T., Kim, J. E., Zucker, F. H., Kelley, A., Mueller, N., Napuli, A. J., Verlinde, C. L., Fan, E., Buckner, F. S., Van Voorhis, W. C., Merritt, E. A., and Hol, W. G. (2011) Structure of Leishmania major methionyl-tRNA synthetase in complex with intermediate products methionyladenylate and pyrophosphate Biochimie 93, 570-582
-
(2011)
Biochimie
, vol.93
, pp. 570-582
-
-
Larson, E.T.1
Kim, J.E.2
Zucker, F.H.3
Kelley, A.4
Mueller, N.5
Napuli, A.J.6
Verlinde, C.L.7
Fan, E.8
Buckner, F.S.9
Van Voorhis, W.C.10
Merritt, E.A.11
Hol, W.G.12
-
214
-
-
0035793701
-
How methionyl-tRNA synthetase creates its amino acid recognition pocket upon l -methionine binding
-
Serre, L., Verdon, G., Choinowski, T., Hervouet, N., Risler, J. L., and Zelwer, C. (2001) How methionyl-tRNA synthetase creates its amino acid recognition pocket upon l -methionine binding J. Mol. Biol. 306, 863-876
-
(2001)
J. Mol. Biol.
, vol.306
, pp. 863-876
-
-
Serre, L.1
Verdon, G.2
Choinowski, T.3
Hervouet, N.4
Risler, J.L.5
Zelwer, C.6
-
215
-
-
70450223121
-
Switching from an induced-fit to a lock-and-key mechanism in an aminoacyl-tRNA synthetase with modified specificity
-
Schmitt, E., Tanrikulu, I. C., Yoo, T. H., Panvert, M., Tirrell, D. A., and Mechulam, Y. (2009) Switching from an induced-fit to a lock-and-key mechanism in an aminoacyl-tRNA synthetase with modified specificity J. Mol. Biol. 394, 843-851
-
(2009)
J. Mol. Biol.
, vol.394
, pp. 843-851
-
-
Schmitt, E.1
Tanrikulu, I.C.2
Yoo, T.H.3
Panvert, M.4
Tirrell, D.A.5
Mechulam, Y.6
-
216
-
-
77956637817
-
Flexibility and communication within the structure of the Mycobacterium smegmatis methionyl-tRNA synthetase
-
Ingvarsson, H. and Unge, T. (2010) Flexibility and communication within the structure of the Mycobacterium smegmatis methionyl-tRNA synthetase FEBS J. 277, 3947-3962
-
(2010)
FEBS J.
, vol.277
, pp. 3947-3962
-
-
Ingvarsson, H.1
Unge, T.2
-
217
-
-
0019426324
-
Methionyl-tRNA synthetase shows the nucleotide binding fold observed in dehydrogenases
-
Risler, J. L., Zelwer, C., and Brunie, S. (1981) Methionyl-tRNA synthetase shows the nucleotide binding fold observed in dehydrogenases Nature 292, 384-386
-
(1981)
Nature
, vol.292
, pp. 384-386
-
-
Risler, J.L.1
Zelwer, C.2
Brunie, S.3
-
218
-
-
67349127495
-
Crystal structures of the human and fungal cytosolic leucyl-tRNA synthetase editing domains: A structural basis for the rational design of antifungal benzoxaboroles
-
Seiradake, E., Mao, W., Hernandez, V., Baker, S. J., Plattner, J. J., Alley, M. R., and Cusack, S. (2009) Crystal structures of the human and fungal cytosolic leucyl-tRNA synthetase editing domains: A structural basis for the rational design of antifungal benzoxaboroles J. Mol. Biol. 390, 196-207
-
(2009)
J. Mol. Biol.
, vol.390
, pp. 196-207
-
-
Seiradake, E.1
Mao, W.2
Hernandez, V.3
Baker, S.J.4
Plattner, J.J.5
Alley, M.R.6
Cusack, S.7
-
219
-
-
0037961667
-
Structural and mechanistic basis of pre- and posttransfer editing by leucyl-tRNA synthetase
-
Lincecum, T. L., Jr., Tukalo, M., Yaremchuk, A., Mursinna, R. S., Williams, A. M., Sproat, B. S., Van Den Eynde, W., Link, A., Van Calenbergh, S., Grotli, M., Martinis, S. A., and Cusack, S. (2003) Structural and mechanistic basis of pre- and posttransfer editing by leucyl-tRNA synthetase Mol. Cell 11, 951-963
-
(2003)
Mol. Cell
, vol.11
, pp. 951-963
-
-
Lincecum Jr., T.L.1
Tukalo, M.2
Yaremchuk, A.3
Mursinna, R.S.4
Williams, A.M.5
Sproat, B.S.6
Van Den Eynde, W.7
Link, A.8
Van Calenbergh, S.9
Grotli, M.10
Martinis, S.A.11
Cusack, S.12
-
220
-
-
0034657687
-
The 2 Å crystal structure of leucyl-tRNA synthetase and its complex with a leucyl-adenylate analogue
-
Cusack, S., Yaremchuk, A., and Tukalo, M. (2000) The 2 Å crystal structure of leucyl-tRNA synthetase and its complex with a leucyl-adenylate analogue EMBO J. 19, 2351-2361
-
(2000)
EMBO J.
, vol.19
, pp. 2351-2361
-
-
Cusack, S.1
Yaremchuk, A.2
Tukalo, M.3
-
221
-
-
27144520077
-
Aminoacylation complex structures of leucyl-tRNA synthetase and tRNALeu reveal two modes of discriminator-base recognition
-
Fukunaga, R. and Yokoyama, S. (2005) Aminoacylation complex structures of leucyl-tRNA synthetase and tRNALeu reveal two modes of discriminator-base recognition Nat. Struct. Mol. Biol. 12, 915-922
-
(2005)
Nat. Struct. Mol. Biol.
, vol.12
, pp. 915-922
-
-
Fukunaga, R.1
Yokoyama, S.2
-
222
-
-
12344309250
-
Crystal structure of leucyl-tRNA synthetase from the archaeon Pyrococcus horikoshii reveals a novel editing domain orientation
-
Fukunaga, R. and Yokoyama, S. (2005) Crystal structure of leucyl-tRNA synthetase from the archaeon Pyrococcus horikoshii reveals a novel editing domain orientation J. Mol. Biol. 346, 57-71
-
(2005)
J. Mol. Biol.
, vol.346
, pp. 57-71
-
-
Fukunaga, R.1
Yokoyama, S.2
-
223
-
-
33644748247
-
Crystal structures of the editing domain of Escherichia coli leucyl-tRNA synthetase and its complexes with Met and Ile reveal a lock-and-key mechanism for amino acid discrimination
-
Liu, Y., Liao, J., Zhu, B., Wang, E. D., and Ding, J. (2006) Crystal structures of the editing domain of Escherichia coli leucyl-tRNA synthetase and its complexes with Met and Ile reveal a lock-and-key mechanism for amino acid discrimination Biochem. J. 394, 399-407
-
(2006)
Biochem. J.
, vol.394
, pp. 399-407
-
-
Liu, Y.1
Liao, J.2
Zhu, B.3
Wang, E.D.4
Ding, J.5
-
224
-
-
81155154367
-
Peripheral insertion modulates the editing activity of the isolated CP1 domain of leucyl-tRNA synthetase
-
Liu, R. J., Tan, M., Du, D. H., Xu, B. S., Eriani, G., and Wang, E. D. (2011) Peripheral insertion modulates the editing activity of the isolated CP1 domain of leucyl-tRNA synthetase Biochem. J. 440, 217-227
-
(2011)
Biochem. J.
, vol.440
, pp. 217-227
-
-
Liu, R.J.1
Tan, M.2
Du, D.H.3
Xu, B.S.4
Eriani, G.5
Wang, E.D.6
-
225
-
-
0035861676
-
Structural basis for the recognition of isoleucyl-adenylate and an antibiotic, mupirocin, by isoleucyl-tRNA synthetase
-
Nakama, T., Nureki, O., and Yokoyama, S. (2001) Structural basis for the recognition of isoleucyl-adenylate and an antibiotic, mupirocin, by isoleucyl-tRNA synthetase J. Biol. Chem. 276, 47387-47393
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 47387-47393
-
-
Nakama, T.1
Nureki, O.2
Yokoyama, S.3
-
226
-
-
1542349267
-
Crystal structures of the CP1 domain from Thermus thermophilus isoleucyl-tRNA synthetase and its complex with l -valine
-
Fukunaga, R., Fukai, S., Ishitani, R., Nureki, O., and Yokoyama, S. (2004) Crystal structures of the CP1 domain from Thermus thermophilus isoleucyl-tRNA synthetase and its complex with l -valine J. Biol. Chem. 279, 8396-8402
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 8396-8402
-
-
Fukunaga, R.1
Fukai, S.2
Ishitani, R.3
Nureki, O.4
Yokoyama, S.5
-
227
-
-
33744899308
-
Structural basis for substrate recognition by the editing domain of isoleucyl-tRNA synthetase
-
Fukunaga, R. and Yokoyama, S. (2006) Structural basis for substrate recognition by the editing domain of isoleucyl-tRNA synthetase J. Mol. Biol. 359, 901-912
-
(2006)
J. Mol. Biol.
, vol.359
, pp. 901-912
-
-
Fukunaga, R.1
Yokoyama, S.2
-
228
-
-
0037273353
-
Mechanism of molecular interactions for tRNA(Val) recognition by valyl-tRNA synthetase
-
Fukai, S., Nureki, O., Sekine, S., Shimada, A., Vassylyev, D. G., and Yokoyama, S. (2003) Mechanism of molecular interactions for tRNA(Val) recognition by valyl-tRNA synthetase RNA 9, 100-111
-
(2003)
RNA
, vol.9
, pp. 100-111
-
-
Fukai, S.1
Nureki, O.2
Sekine, S.3
Shimada, A.4
Vassylyev, D.G.5
Yokoyama, S.6
-
229
-
-
23844558038
-
Structural basis for non-cognate amino acid discrimination by the valyl-tRNA synthetase editing domain
-
Fukunaga, R. and Yokoyama, S. (2005) Structural basis for non-cognate amino acid discrimination by the valyl-tRNA synthetase editing domain J. Biol. Chem. 280, 29937-29945
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 29937-29945
-
-
Fukunaga, R.1
Yokoyama, S.2
-
230
-
-
0037013921
-
Structural origins of amino acid selection without editing by cysteinyl-tRNA synthetase
-
Newberry, K. J., Hou, Y. M., and Perona, J. J. (2002) Structural origins of amino acid selection without editing by cysteinyl-tRNA synthetase EMBO J. 21, 2778-2787
-
(2002)
EMBO J.
, vol.21
, pp. 2778-2787
-
-
Newberry, K.J.1
Hou, Y.M.2
Perona, J.J.3
-
231
-
-
34247136211
-
Deinococcus glutaminyl-tRNA synthetase is a chimer between proteins from an ancient and the modern pathways of aminoacyl-tRNA formation
-
Deniziak, M., Sauter, C., Becker, H. D., Paulus, C. A., Giege, R., and Kern, D. (2007) Deinococcus glutaminyl-tRNA synthetase is a chimer between proteins from an ancient and the modern pathways of aminoacyl-tRNA formation Nucleic Acids Res. 35, 1421-1431
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 1421-1431
-
-
Deniziak, M.1
Sauter, C.2
Becker, H.D.3
Paulus, C.A.4
Giege, R.5
Kern, D.6
-
232
-
-
84860364709
-
Structural conservation of an ancient tRNA sensor in eukaryotic glutaminyl-tRNA synthetase
-
Grant, T. D., Snell, E. H., Luft, J. R., Quartley, E., Corretore, S., Wolfley, J. R., Snell, M. E., Hadd, A., Perona, J. J., Phizicky, E. M., and Grayhack, E. J. (2012) Structural conservation of an ancient tRNA sensor in eukaryotic glutaminyl-tRNA synthetase Nucleic Acids Res. 40, 3723-3731
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 3723-3731
-
-
Grant, T.D.1
Snell, E.H.2
Luft, J.R.3
Quartley, E.4
Corretore, S.5
Wolfley, J.R.6
Snell, M.E.7
Hadd, A.8
Perona, J.J.9
Phizicky, E.M.10
Grayhack, E.J.11
-
233
-
-
0034098420
-
Tertiary core rearrangements in a tight binding transfer RNA aptamer
-
Bullock, T. L., Sherlin, L. D., and Perona, J. J. (2000) Tertiary core rearrangements in a tight binding transfer RNA aptamer Nat. Struct. Biol. 7, 497-504
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 497-504
-
-
Bullock, T.L.1
Sherlin, L.D.2
Perona, J.J.3
-
234
-
-
0034595508
-
Influence of transfer RNA tertiary structure on aminoacylation efficiency by glutaminyl and cysteinyl-tRNA synthetases
-
Sherlin, L. D., Bullock, T. L., Newberry, K. J., Lipman, R. S., Hou, Y. M., Beijer, B., Sproat, B. S., and Perona, J. J. (2000) Influence of transfer RNA tertiary structure on aminoacylation efficiency by glutaminyl and cysteinyl-tRNA synthetases J. Mol. Biol. 299, 431-446
-
(2000)
J. Mol. Biol.
, vol.299
, pp. 431-446
-
-
Sherlin, L.D.1
Bullock, T.L.2
Newberry, K.J.3
Lipman, R.S.4
Hou, Y.M.5
Beijer, B.6
Sproat, B.S.7
Perona, J.J.8
-
235
-
-
0025744320
-
Structural basis of anticodon loop recognition by glutaminyl-tRNA synthetase
-
Rould, M. A., Perona, J. J., and Steitz, T. A. (1991) Structural basis of anticodon loop recognition by glutaminyl-tRNA synthetase Nature 352, 213-218
-
(1991)
Nature
, vol.352
, pp. 213-218
-
-
Rould, M.A.1
Perona, J.J.2
Steitz, T.A.3
-
236
-
-
33845324526
-
Structural bases of transfer RNA-dependent amino acid recognition and activation by glutamyl-tRNA synthetase
-
Sekine, S., Shichiri, M., Bernier, S., Chenevert, R., Lapointe, J., and Yokoyama, S. (2006) Structural bases of transfer RNA-dependent amino acid recognition and activation by glutamyl-tRNA synthetase Structure 14, 1791-1799
-
(2006)
Structure
, vol.14
, pp. 1791-1799
-
-
Sekine, S.1
Shichiri, M.2
Bernier, S.3
Chenevert, R.4
Lapointe, J.5
Yokoyama, S.6
-
237
-
-
0028922228
-
Architectures of class-defining and specific domains of glutamyl-tRNA synthetase
-
Nureki, O., Vassylyev, D. G., Katayanagi, K., Shimizu, T., Sekine, S., Kigawa, T., Miyazawa, T., Yokoyama, S., and Morikawa, K. (1995) Architectures of class-defining and specific domains of glutamyl-tRNA synthetase Science 267, 1958-1965
-
(1995)
Science
, vol.267
, pp. 1958-1965
-
-
Nureki, O.1
Vassylyev, D.G.2
Katayanagi, K.3
Shimizu, T.4
Sekine, S.5
Kigawa, T.6
Miyazawa, T.7
Yokoyama, S.8
Morikawa, K.9
-
238
-
-
77955243439
-
Structure of an archaeal non-discriminating glutamyl-tRNA synthetase: A missing link in the evolution of Gln-tRNAGln formation
-
Nureki, O., O'Donoghue, P., Watanabe, N., Ohmori, A., Oshikane, H., Araiso, Y., Sheppard, K., Soll, D., and Ishitani, R. (2010) Structure of an archaeal non-discriminating glutamyl-tRNA synthetase: A missing link in the evolution of Gln-tRNAGln formation Nucleic Acids Res. 38, 7286-7297
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 7286-7297
-
-
Nureki, O.1
O'Donoghue, P.2
Watanabe, N.3
Ohmori, A.4
Oshikane, H.5
Araiso, Y.6
Sheppard, K.7
Soll, D.8
Ishitani, R.9
-
239
-
-
77954443679
-
Structure of nondiscriminating glutamyl-tRNA synthetase from Thermotoga maritima
-
Ito, T., Kiyasu, N., Matsunaga, R., Takahashi, S., and Yokoyama, S. (2010) Structure of nondiscriminating glutamyl-tRNA synthetase from Thermotoga maritima Acta Crystallogr. D66, 813-820
-
(2010)
Acta Crystallogr.
, vol.66
, pp. 813-820
-
-
Ito, T.1
Kiyasu, N.2
Matsunaga, R.3
Takahashi, S.4
Yokoyama, S.5
-
240
-
-
33746864929
-
Crystal structure of a non-discriminating glutamyl-tRNA synthetase
-
Schulze, J. O., Masoumi, A., Nickel, D., Jahn, M., Jahn, D., Schubert, W. D., and Heinz, D. W. (2006) Crystal structure of a non-discriminating glutamyl-tRNA synthetase J. Mol. Biol. 361, 888-897
-
(2006)
J. Mol. Biol.
, vol.361
, pp. 888-897
-
-
Schulze, J.O.1
Masoumi, A.2
Nickel, D.3
Jahn, M.4
Jahn, D.5
Schubert, W.D.6
Heinz, D.W.7
-
241
-
-
82555196544
-
Malaria parasite tyrosyl-tRNA synthetase secretion triggers pro-inflammatory responses
-
Bhatt, T. K., Khan, S., Dwivedi, V. P., Banday, M. M., Sharma, A., Chandele, A., Camacho, N., de Pouplana, L. R., Wu, Y., Craig, A. G., Mikkonen, A. T., Maier, A. G., and Yogavel, M. (2011) Malaria parasite tyrosyl-tRNA synthetase secretion triggers pro-inflammatory responses Nat. Commun. 2, 530
-
(2011)
Nat. Commun.
, vol.2
, pp. 530
-
-
Bhatt, T.K.1
Khan, S.2
Dwivedi, V.P.3
Banday, M.M.4
Sharma, A.5
Chandele, A.6
Camacho, N.7
De Pouplana, L.R.8
Wu, Y.9
Craig, A.G.10
Mikkonen, A.T.11
Maier, A.G.12
Yogavel, M.13
-
242
-
-
79955906146
-
The double-length tyrosyl-tRNA synthetase from the eukaryote Leishmania major forms an intrinsically asymmetric pseudo-dimer
-
Larson, E. T., Kim, J. E., Castaneda, L. J., Napuli, A. J., Zhang, Z., Fan, E., Zucker, F. H., Verlinde, C. L., Buckner, F. S., Van Voorhis, W. C., Hol, W. G., and Merritt, E. A. (2011) The double-length tyrosyl-tRNA synthetase from the eukaryote Leishmania major forms an intrinsically asymmetric pseudo-dimer J. Mol. Biol. 409, 159-176
-
(2011)
J. Mol. Biol.
, vol.409
, pp. 159-176
-
-
Larson, E.T.1
Kim, J.E.2
Castaneda, L.J.3
Napuli, A.J.4
Zhang, Z.5
Fan, E.6
Zucker, F.H.7
Verlinde, C.L.8
Buckner, F.S.9
Van Voorhis, W.C.10
Hol, W.G.11
Merritt, E.A.12
-
243
-
-
12344283963
-
Structural snapshots of the KMSKS loop rearrangement for amino acid activation by bacterial tyrosyl-tRNA synthetase
-
Kobayashi, T., Takimura, T., Sekine, R., Kelly, V. P., Kamata, K., Sakamoto, K., Nishimura, S., and Yokoyama, S. (2005) Structural snapshots of the KMSKS loop rearrangement for amino acid activation by bacterial tyrosyl-tRNA synthetase J. Mol. Biol. 346, 105-117
-
(2005)
J. Mol. Biol.
, vol.346
, pp. 105-117
-
-
Kobayashi, T.1
Takimura, T.2
Sekine, R.3
Kelly, V.P.4
Kamata, K.5
Sakamoto, K.6
Nishimura, S.7
Yokoyama, S.8
-
244
-
-
35948993003
-
Crystal structure of human mitochondrial tyrosyl-tRNA synthetase reveals common and idiosyncratic features
-
Bonnefond, L., Frugier, M., Touze, E., Lorber, B., Florentz, C., Giege, R., Sauter, C., and Rudinger-Thirion, J. (2007) Crystal structure of human mitochondrial tyrosyl-tRNA synthetase reveals common and idiosyncratic features Structure 15, 1505-1516
-
(2007)
Structure
, vol.15
, pp. 1505-1516
-
-
Bonnefond, L.1
Frugier, M.2
Touze, E.3
Lorber, B.4
Florentz, C.5
Giege, R.6
Sauter, C.7
Rudinger-Thirion, J.8
-
245
-
-
35949003882
-
Virus-encoded aminoacyl-tRNA synthetases: Structural and functional characterization of mimivirus TyrRS and MetRS
-
Abergel, C., Rudinger-Thirion, J., Giege, R., and Claverie, J. M. (2007) Virus-encoded aminoacyl-tRNA synthetases: Structural and functional characterization of mimivirus TyrRS and MetRS J. Virol. 81, 12406-12417
-
(2007)
J. Virol.
, vol.81
, pp. 12406-12417
-
-
Abergel, C.1
Rudinger-Thirion, J.2
Giege, R.3
Claverie, J.M.4
-
246
-
-
77954380484
-
Functional replacement of the endogenous tyrosyl-tRNA synthetase-tRNATyr pair by the archaeal tyrosine pair in Escherichia coli for genetic code expansion
-
Iraha, F., Oki, K., Kobayashi, T., Ohno, S., Yokogawa, T., Nishikawa, K., Yokoyama, S., and Sakamoto, K. (2010) Functional replacement of the endogenous tyrosyl-tRNA synthetase-tRNATyr pair by the archaeal tyrosine pair in Escherichia coli for genetic code expansion Nucleic Acids Res. 38, 3682-3691
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 3682-3691
-
-
Iraha, F.1
Oki, K.2
Kobayashi, T.3
Ohno, S.4
Yokogawa, T.5
Nishikawa, K.6
Yokoyama, S.7
Sakamoto, K.8
-
247
-
-
13444265892
-
Structural basis of nonnatural amino acid recognition by an engineered aminoacyl-tRNA synthetase for genetic code expansion
-
Kobayashi, T., Sakamoto, K., Takimura, T., Sekine, R., Kelly, V. P., Kamata, K., Nishimura, S., and Yokoyama, S. (2005) Structural basis of nonnatural amino acid recognition by an engineered aminoacyl-tRNA synthetase for genetic code expansion Proc. Natl. Acad. Sci. U.S.A. 102, 1366-1371
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 1366-1371
-
-
Kobayashi, T.1
Sakamoto, K.2
Takimura, T.3
Sekine, R.4
Kelly, V.P.5
Kamata, K.6
Nishimura, S.7
Yokoyama, S.8
-
248
-
-
28944440615
-
Crystal structures of tyrosyl-tRNA synthetases from Archaea
-
Kuratani, M., Sakai, H., Takahashi, M., Yanagisawa, T., Kobayashi, T., Murayama, K., Chen, L., Liu, Z. J., Wang, B. C., Kuroishi, C., Kuramitsu, S., Terada, T., Bessho, Y., Shirouzu, M., Sekine, S., and Yokoyama, S. (2006) Crystal structures of tyrosyl-tRNA synthetases from Archaea J. Mol. Biol. 355, 395-408
-
(2006)
J. Mol. Biol.
, vol.355
, pp. 395-408
-
-
Kuratani, M.1
Sakai, H.2
Takahashi, M.3
Yanagisawa, T.4
Kobayashi, T.5
Murayama, K.6
Chen, L.7
Liu, Z.J.8
Wang, B.C.9
Kuroishi, C.10
Kuramitsu, S.11
Terada, T.12
Bessho, Y.13
Shirouzu, M.14
Sekine, S.15
Yokoyama, S.16
-
249
-
-
0037512360
-
Structural basis for orthogonal tRNA specificities of tyrosyl-tRNA synthetases for genetic code expansion
-
Kobayashi, T., Nureki, O., Ishitani, R., Yaremchuk, A., Tukalo, M., Cusack, S., Sakamoto, K., and Yokoyama, S. (2003) Structural basis for orthogonal tRNA specificities of tyrosyl-tRNA synthetases for genetic code expansion Nat. Struct. Biol. 10, 425-432
-
(2003)
Nat. Struct. Biol.
, vol.10
, pp. 425-432
-
-
Kobayashi, T.1
Nureki, O.2
Ishitani, R.3
Yaremchuk, A.4
Tukalo, M.5
Cusack, S.6
Sakamoto, K.7
Yokoyama, S.8
-
250
-
-
0346103681
-
Crystal structures that suggest late development of genetic code components for differentiating aromatic side chains
-
Yang, X. L., Otero, F. J., Skene, R. J., McRee, D. E., Schimmel, P., and Ribas de Pouplana, L. (2003) Crystal structures that suggest late development of genetic code components for differentiating aromatic side chains Proc. Natl. Acad. Sci. U.S.A. 100, 15376-15380
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.100
, pp. 15376-15380
-
-
Yang, X.L.1
Otero, F.J.2
Skene, R.J.3
McRee, D.E.4
Schimmel, P.5
Ribas De Pouplana, L.6
-
251
-
-
0037180444
-
Crystal structure of a human aminoacyl-tRNA synthetase cytokine
-
Yang, X. L., Skene, R. J., McRee, D. E., and Schimmel, P. (2002) Crystal structure of a human aminoacyl-tRNA synthetase cytokine Proc. Natl. Acad. Sci. U.S.A. 99, 15369-15374
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 15369-15374
-
-
Yang, X.L.1
Skene, R.J.2
McRee, D.E.3
Schimmel, P.4
-
252
-
-
0034815817
-
Crystal structure of Staphylococcus aureus tyrosyl-tRNA synthetase in complex with a class of potent and specific inhibitors
-
Qiu, X., Janson, C. A., Smith, W. W., Green, S. M., McDevitt, P., Johanson, K., Carter, P., Hibbs, M., Lewis, C., Chalker, A., Fosberry, A., Lalonde, J., Berge, J., Brown, P., Houge-Frydrych, C. S., and Jarvest, R. L. (2001) Crystal structure of Staphylococcus aureus tyrosyl-tRNA synthetase in complex with a class of potent and specific inhibitors Protein Sci. 10, 2008-2016
-
(2001)
Protein Sci.
, vol.10
, pp. 2008-2016
-
-
Qiu, X.1
Janson, C.A.2
Smith, W.W.3
Green, S.M.4
McDevitt, P.5
Johanson, K.6
Carter, P.7
Hibbs, M.8
Lewis, C.9
Chalker, A.10
Fosberry, A.11
Lalonde, J.12
Berge, J.13
Brown, P.14
Houge-Frydrych, C.S.15
Jarvest, R.L.16
-
253
-
-
77958463297
-
A biosynthetic route to photoclick chemistry on proteins
-
Wang, J., Zhang, W., Song, W., Wang, Y., Yu, Z., Li, J., Wu, M., Wang, L., Zang, J., and Lin, Q. (2010) A biosynthetic route to photoclick chemistry on proteins J. Am. Chem. Soc. 132, 14812-14818
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 14812-14818
-
-
Wang, J.1
Zhang, W.2
Song, W.3
Wang, Y.4
Yu, Z.5
Li, J.6
Wu, M.7
Wang, L.8
Zang, J.9
Lin, Q.10
-
254
-
-
60549098792
-
Independent saturation of three TrpRS subsites generates a partially assembled state similar to those observed in molecular simulations
-
Laowanapiban, P., Kapustina, M., Vonrhein, C., Delarue, M., Koehl, P., and Carter, C. W., Jr. (2009) Independent saturation of three TrpRS subsites generates a partially assembled state similar to those observed in molecular simulations Proc. Natl. Acad. Sci. U.S.A. 106, 1790-1795
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 1790-1795
-
-
Laowanapiban, P.1
Kapustina, M.2
Vonrhein, C.3
Delarue, M.4
Koehl, P.5
Carter Jr., C.W.6
-
255
-
-
77953713828
-
The structure of tryptophanyl-tRNA synthetase from Giardia lamblia reveals divergence from eukaryotic homologs
-
Arakaki, T. L., Carter, M., Napuli, A. J., Verlinde, C. L., Fan, E., Zucker, F., Buckner, F. S., Van Voorhis, W. C., Hol, W. G., and Merritt, E. A. (2010) The structure of tryptophanyl-tRNA synthetase from Giardia lamblia reveals divergence from eukaryotic homologs J. Struct. Biol. 171, 238-243
-
(2010)
J. Struct. Biol.
, vol.171
, pp. 238-243
-
-
Arakaki, T.L.1
Carter, M.2
Napuli, A.J.3
Verlinde, C.L.4
Fan, E.5
Zucker, F.6
Buckner, F.S.7
Van Voorhis, W.C.8
Hol, W.G.9
Merritt, E.A.10
-
256
-
-
0033622155
-
2.9 Å crystal structure of ligand-free tryptophanyl-tRNA synthetase: Domain movements fragment the adenine nucleotide binding site
-
Ilyin, V. A., Temple, B., Hu, M., Li, G., Yin, Y., Vachette, P., and Carter, C. W., Jr. (2000) 2.9 Å crystal structure of ligand-free tryptophanyl-tRNA synthetase: Domain movements fragment the adenine nucleotide binding site Protein Sci. 9, 218-231
-
(2000)
Protein Sci.
, vol.9
, pp. 218-231
-
-
Ilyin, V.A.1
Temple, B.2
Hu, M.3
Li, G.4
Yin, Y.5
Vachette, P.6
Carter Jr., C.W.7
-
257
-
-
0037255536
-
Interconversion of ATP binding and conformational free energies by tryptophanyl-tRNA synthetase: Structures of ATP bound to open and closed, pre-transition-state conformations
-
Retailleau, P., Huang, X., Yin, Y., Hu, M., Weinreb, V., Vachette, P., Vonrhein, C., Bricogne, G., Roversi, P., Ilyin, V., and Carter, C. W., Jr. (2003) Interconversion of ATP binding and conformational free energies by tryptophanyl-tRNA synthetase: Structures of ATP bound to open and closed, pre-transition-state conformations J. Mol. Biol. 325, 39-63
-
(2003)
J. Mol. Biol.
, vol.325
, pp. 39-63
-
-
Retailleau, P.1
Huang, X.2
Yin, Y.3
Hu, M.4
Weinreb, V.5
Vachette, P.6
Vonrhein, C.7
Bricogne, G.8
Roversi, P.9
Ilyin, V.10
Carter Jr., C.W.11
-
258
-
-
77950365401
-
Crystal structure of Pyrococcus horikoshii tryptophanyl-tRNA synthetase and structure-based phylogenetic analysis suggest an archaeal origin of tryptophanyl-tRNA synthetase
-
Dong, X., Zhou, M., Zhong, C., Yang, B., Shen, N., and Ding, J. (2010) Crystal structure of Pyrococcus horikoshii tryptophanyl-tRNA synthetase and structure-based phylogenetic analysis suggest an archaeal origin of tryptophanyl-tRNA synthetase Nucleic Acids Res. 38, 1401-1412
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 1401-1412
-
-
Dong, X.1
Zhou, M.2
Zhong, C.3
Yang, B.4
Shen, N.5
Ding, J.6
-
259
-
-
77953723081
-
Crystal structures of Saccharomyces cerevisiae tryptophanyl-tRNA synthetase: New insights into the mechanism of tryptophan activation and implications for anti-fungal drug design
-
Zhou, M., Dong, X., Shen, N., Zhong, C., and Ding, J. (2010) Crystal structures of Saccharomyces cerevisiae tryptophanyl-tRNA synthetase: New insights into the mechanism of tryptophan activation and implications for anti-fungal drug design Nucleic Acids Res. 38, 3399-3413
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 3399-3413
-
-
Zhou, M.1
Dong, X.2
Shen, N.3
Zhong, C.4
Ding, J.5
-
260
-
-
40349107248
-
Catalytic mechanism of the tryptophan activation reaction revealed by crystal structures of human tryptophanyl-tRNA synthetase in different enzymatic states
-
Shen, N., Zhou, M., Yang, B., Yu, Y., Dong, X., and Ding, J. (2008) Catalytic mechanism of the tryptophan activation reaction revealed by crystal structures of human tryptophanyl-tRNA synthetase in different enzymatic states Nucleic Acids Res. 36, 1288-1299
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 1288-1299
-
-
Shen, N.1
Zhou, M.2
Yang, B.3
Yu, Y.4
Dong, X.5
Ding, J.6
-
261
-
-
33745794737
-
Structure of human tryptophanyl-tRNA synthetase in complex with tRNATrp reveals the molecular basis of tRNA recognition and specificity
-
Shen, N., Guo, L., Yang, B., Jin, Y., and Ding, J. (2006) Structure of human tryptophanyl-tRNA synthetase in complex with tRNATrp reveals the molecular basis of tRNA recognition and specificity Nucleic Acids Res. 34, 3246-3258
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 3246-3258
-
-
Shen, N.1
Guo, L.2
Yang, B.3
Jin, Y.4
Ding, J.5
-
262
-
-
1542349274
-
Crystal structure of human tryptophanyl-tRNA synthetase catalytic fragment: Insights into substrate recognition, tRNA binding, and angiogenesis activity
-
Yu, Y., Liu, Y., Shen, N., Xu, X., Xu, F., Jia, J., Jin, Y., Arnold, E., and Ding, J. (2004) Crystal structure of human tryptophanyl-tRNA synthetase catalytic fragment: Insights into substrate recognition, tRNA binding, and angiogenesis activity J. Biol. Chem. 279, 8378-8388
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 8378-8388
-
-
Yu, Y.1
Liu, Y.2
Shen, N.3
Xu, X.4
Xu, F.5
Jia, J.6
Jin, Y.7
Arnold, E.8
Ding, J.9
-
263
-
-
0742270603
-
A short peptide insertion crucial for angiostatic activity of human tryptophanyl-tRNA synthetase
-
Kise, Y., Lee, S. W., Park, S. G., Fukai, S., Sengoku, T., Ishii, R., Yokoyama, S., Kim, S., and Nureki, O. (2004) A short peptide insertion crucial for angiostatic activity of human tryptophanyl-tRNA synthetase Nat. Struct. Mol. Biol. 11, 149-156
-
(2004)
Nat. Struct. Mol. Biol.
, vol.11
, pp. 149-156
-
-
Kise, Y.1
Lee, S.W.2
Park, S.G.3
Fukai, S.4
Sengoku, T.5
Ishii, R.6
Yokoyama, S.7
Kim, S.8
Nureki, O.9
-
264
-
-
34447307157
-
Functional and crystal structure analysis of active site adaptations of a potent anti-angiogenic human tRNA synthetase
-
Yang, X. L., Guo, M., Kapoor, M., Ewalt, K. L., Otero, F. J., Skene, R. J., McRee, D. E., and Schimmel, P. (2007) Functional and crystal structure analysis of active site adaptations of a potent anti-angiogenic human tRNA synthetase Structure 15, 793-805
-
(2007)
Structure
, vol.15
, pp. 793-805
-
-
Yang, X.L.1
Guo, M.2
Kapoor, M.3
Ewalt, K.L.4
Otero, F.J.5
Skene, R.J.6
McRee, D.E.7
Schimmel, P.8
-
265
-
-
79952452100
-
Crystal structures of three protozoan homologs of tryptophanyl-tRNA synthetase
-
Merritt, E. A., Arakaki, T. L., Gillespie, R., Napuli, A. J., Kim, J. E., Buckner, F. S., Van Voorhis, W. C., Verlinde, C. L., Fan, E., Zucker, F., and Hol, W. G. (2011) Crystal structures of three protozoan homologs of tryptophanyl-tRNA synthetase Mol. Biochem. Parasitol. 177, 20-28
-
(2011)
Mol. Biochem. Parasitol.
, vol.177
, pp. 20-28
-
-
Merritt, E.A.1
Arakaki, T.L.2
Gillespie, R.3
Napuli, A.J.4
Kim, J.E.5
Buckner, F.S.6
Van Voorhis, W.C.7
Verlinde, C.L.8
Fan, E.9
Zucker, F.10
Hol, W.G.11
-
266
-
-
17844383744
-
Structure and activity of an aminoacyl-tRNA synthetase that charges tRNA with nitro-tryptophan
-
Buddha, M. R. and Crane, B. R. (2005) Structure and activity of an aminoacyl-tRNA synthetase that charges tRNA with nitro-tryptophan Nat. Struct. Mol. Biol. 12, 274-275
-
(2005)
Nat. Struct. Mol. Biol.
, vol.12
, pp. 274-275
-
-
Buddha, M.R.1
Crane, B.R.2
-
267
-
-
24744471836
-
Structures of tryptophanyl-tRNA synthetase II from Deinococcus radiodurans bound to ATP and tryptophan. Insight into subunit cooperativity and domain motions linked to catalysis
-
Buddha, M. R. and Crane, B. R. (2005) Structures of tryptophanyl-tRNA synthetase II from Deinococcus radiodurans bound to ATP and tryptophan. Insight into subunit cooperativity and domain motions linked to catalysis J. Biol. Chem. 280, 31965-31973
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 31965-31973
-
-
Buddha, M.R.1
Crane, B.R.2
-
268
-
-
34249856231
-
Blocking S-adenosylmethionine synthesis in yeast allows selenomethionine incorporation and multiwavelength anomalous dispersion phasing
-
Malkowski, M. G., Quartley, E., Friedman, A. E., Babulski, J., Kon, Y., Wolfley, J., Said, M., Luft, J. R., Phizicky, E. M., DeTitta, G. T., and Grayhack, E. J. (2007) Blocking S-adenosylmethionine synthesis in yeast allows selenomethionine incorporation and multiwavelength anomalous dispersion phasing Proc. Natl. Acad. Sci. U.S.A. 104, 6678-6683
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 6678-6683
-
-
Malkowski, M.G.1
Quartley, E.2
Friedman, A.E.3
Babulski, J.4
Kon, Y.5
Wolfley, J.6
Said, M.7
Luft, J.R.8
Phizicky, E.M.9
Detitta, G.T.10
Grayhack, E.J.11
-
269
-
-
34247471258
-
Crystal structure of tryptophanyl-tRNA synthetase complexed with adenosine-5′ tetraphosphate: Evidence for distributed use of catalytic binding energy in amino acid activation by class i aminoacyl-tRNA synthetases
-
Retailleau, P., Weinreb, V., Hu, M., and Carter, C. W., Jr. (2007) Crystal structure of tryptophanyl-tRNA synthetase complexed with adenosine-5′ tetraphosphate: Evidence for distributed use of catalytic binding energy in amino acid activation by class I aminoacyl-tRNA synthetases J. Mol. Biol. 369, 108-128
-
(2007)
J. Mol. Biol.
, vol.369
, pp. 108-128
-
-
Retailleau, P.1
Weinreb, V.2
Hu, M.3
Carter Jr., C.W.4
-
270
-
-
14344267196
-
High-resolution experimental phases for tryptophanyl-tRNA synthetase (TrpRS) complexed with tryptophanyl-5′AMP
-
Retailleau, P., Yin, Y., Hu, M., Roach, J., Bricogne, G., Vonrhein, C., Roversi, P., Blanc, E., Sweet, R. M., and Carter, C. W., Jr. (2001) High-resolution experimental phases for tryptophanyl-tRNA synthetase (TrpRS) complexed with tryptophanyl-5′AMP Acta Crystallogr. D57, 1595-1608
-
(2001)
Acta Crystallogr.
, vol.57
, pp. 1595-1608
-
-
Retailleau, P.1
Yin, Y.2
Hu, M.3
Roach, J.4
Bricogne, G.5
Vonrhein, C.6
Roversi, P.7
Blanc, E.8
Sweet, R.M.9
Carter Jr., C.W.10
-
271
-
-
77958068442
-
Structure of a tryptophanyl-tRNA synthetase containing an iron-sulfur cluster
-
Han, G. W., Yang, X. L., McMullan, D., Chong, Y. E., Krishna, S. S., Rife, C. L., Weekes, D., Brittain, S. M., Abdubek, P., Ambing, E., Astakhova, T., Axelrod, H. L., Carlton, D., Caruthers, J., Chiu, H. J., Clayton, T., Duan, L., Feuerhelm, J., Grant, J. C., Grzechnik, S. K., Jaroszewski, L., Jin, K. K., Klock, H. E., Knuth, M. W., Kumar, A., Marciano, D., Miller, M. D., Morse, A. T., Nigoghossian, E., Okach, L., Paulsen, J., Reyes, R., van den Bedem, H., White, A., Wolf, G., Xu, Q., Hodgson, K. O., Wooley, J., Deacon, A. M., Godzik, A., Lesley, S. A., Elsliger, M. A., Schimmel, P., and Wilson, I. A. (2010) Structure of a tryptophanyl-tRNA synthetase containing an iron-sulfur cluster Acta Crystallogr. F66, 1326-1334
-
(2010)
Acta Crystallogr.
, vol.66
, pp. 1326-1334
-
-
Han, G.W.1
Yang, X.L.2
McMullan, D.3
Chong, Y.E.4
Krishna, S.S.5
Rife, C.L.6
Weekes, D.7
Brittain, S.M.8
Abdubek, P.9
Ambing, E.10
Astakhova, T.11
Axelrod, H.L.12
Carlton, D.13
Caruthers, J.14
Chiu, H.J.15
Clayton, T.16
Duan, L.17
Feuerhelm, J.18
Grant, J.C.19
Grzechnik, S.K.20
Jaroszewski, L.21
Jin, K.K.22
Klock, H.E.23
Knuth, M.W.24
Kumar, A.25
Marciano, D.26
Miller, M.D.27
Morse, A.T.28
Nigoghossian, E.29
Okach, L.30
Paulsen, J.31
Reyes, R.32
Van Den Bedem, H.33
White, A.34
Wolf, G.35
Xu, Q.36
Hodgson, K.O.37
Wooley, J.38
Deacon, A.M.39
Godzik, A.40
Lesley, S.A.41
Elsliger, M.A.42
Schimmel, P.43
Wilson, I.A.44
more..
-
272
-
-
68849098459
-
Modeling of tRNA-assisted mechanism of Arg activation based on a structure of Arg-tRNA synthetase, tRNA, and an ATP analog (ANP)
-
Konno, M., Sumida, T., Uchikawa, E., Mori, Y., Yanagisawa, T., Sekine, S., and Yokoyama, S. (2009) Modeling of tRNA-assisted mechanism of Arg activation based on a structure of Arg-tRNA synthetase, tRNA, and an ATP analog (ANP) FEBS J. 276, 4763-4779
-
(2009)
FEBS J.
, vol.276
, pp. 4763-4779
-
-
Konno, M.1
Sumida, T.2
Uchikawa, E.3
Mori, Y.4
Yanagisawa, T.5
Sekine, S.6
Yokoyama, S.7
-
273
-
-
0032530309
-
L -Arginine recognition by yeast arginyl-tRNA synthetase
-
Cavarelli, J., Delagoutte, B., Eriani, G., Gangloff, J., and Moras, D. (1998) l -Arginine recognition by yeast arginyl-tRNA synthetase EMBO J. 17, 5438-5448
-
(1998)
EMBO J.
, vol.17
, pp. 5438-5448
-
-
Cavarelli, J.1
Delagoutte, B.2
Eriani, G.3
Gangloff, J.4
Moras, D.5
-
274
-
-
0035923659
-
Structural and mutational studies of the recognition of the arginine tRNA-specific major identity element, A20, by arginyl-tRNA synthetase
-
Shimada, A., Nureki, O., Goto, M., Takahashi, S., and Yokoyama, S. (2001) Structural and mutational studies of the recognition of the arginine tRNA-specific major identity element, A20, by arginyl-tRNA synthetase Proc. Natl. Acad. Sci. U.S.A. 98, 13537-13542
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, pp. 13537-13542
-
-
Shimada, A.1
Nureki, O.2
Goto, M.3
Takahashi, S.4
Yokoyama, S.5
-
275
-
-
0036213692
-
Functional convergence of two lysyl-tRNA synthetases with unrelated topologies
-
Terada, T., Nureki, O., Ishitani, R., Ambrogelly, A., Ibba, M., Soll, D., and Yokoyama, S. (2002) Functional convergence of two lysyl-tRNA synthetases with unrelated topologies Nat. Struct. Biol. 9, 257-262
-
(2002)
Nat. Struct. Biol.
, vol.9
, pp. 257-262
-
-
Terada, T.1
Nureki, O.2
Ishitani, R.3
Ambrogelly, A.4
Ibba, M.5
Soll, D.6
Yokoyama, S.7
-
276
-
-
0027491528
-
Refined crystal structure of the seryl-tRNA synthetase from Thermus thermophilus at 2.5 Å resolution
-
Fujinaga, M., Berthet-Colominas, C., Yaremchuk, A. D., Tukalo, M. A., and Cusack, S. (1993) Refined crystal structure of the seryl-tRNA synthetase from Thermus thermophilus at 2.5 Å resolution J. Mol. Biol. 234, 222-233
-
(1993)
J. Mol. Biol.
, vol.234
, pp. 222-233
-
-
Fujinaga, M.1
Berthet-Colominas, C.2
Yaremchuk, A.D.3
Tukalo, M.A.4
Cusack, S.5
-
277
-
-
62449208889
-
Crystallographic and mutational studies of seryl-tRNA synthetase from the archaeon Pyrococcus horikoshii
-
Itoh, Y., Sekine, S., Kuroishi, C., Terada, T., Shirouzu, M., Kuramitsu, S., and Yokoyama, S. (2008) Crystallographic and mutational studies of seryl-tRNA synthetase from the archaeon Pyrococcus horikoshii RNA Biol. 5, 169-177
-
(2008)
RNA Biol.
, vol.5
, pp. 169-177
-
-
Itoh, Y.1
Sekine, S.2
Kuroishi, C.3
Terada, T.4
Shirouzu, M.5
Kuramitsu, S.6
Yokoyama, S.7
-
278
-
-
84863230283
-
Unique domain appended to vertebrate tRNA synthetase is essential for vascular development
-
Xu, X., Shi, Y., Zhang, H. M., Swindell, E. C., Marshall, A. G., Guo, M., Kishi, S., and Yang, X. L. (2012) Unique domain appended to vertebrate tRNA synthetase is essential for vascular development Nat. Commun. 3, 681
-
(2012)
Nat. Commun.
, vol.3
, pp. 681
-
-
Xu, X.1
Shi, Y.2
Zhang, H.M.3
Swindell, E.C.4
Marshall, A.G.5
Guo, M.6
Kishi, S.7
Yang, X.L.8
-
279
-
-
80052182956
-
Unveiling the structural basis for translational ambiguity tolerance in a human fungal pathogen
-
Rocha, R., Pereira, P. J., Santos, M. A., and Macedo-Ribeiro, S. (2011) Unveiling the structural basis for translational ambiguity tolerance in a human fungal pathogen Proc. Natl. Acad. Sci. U.S.A. 108, 14091-14096
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 14091-14096
-
-
Rocha, R.1
Pereira, P.J.2
Santos, M.A.3
MacEdo-Ribeiro, S.4
-
280
-
-
27144454126
-
Dual-mode recognition of noncanonical tRNAs(Ser) by seryl-tRNA synthetase in mammalian mitochondria
-
Chimnaronk, S., Gravers Jeppesen, M., Suzuki, T., Nyborg, J., and Watanabe, K. (2005) Dual-mode recognition of noncanonical tRNAs(Ser) by seryl-tRNA synthetase in mammalian mitochondria EMBO J. 24, 3369-3379
-
(2005)
EMBO J.
, vol.24
, pp. 3369-3379
-
-
Chimnaronk, S.1
Gravers Jeppesen, M.2
Suzuki, T.3
Nyborg, J.4
Watanabe, K.5
-
281
-
-
0030011019
-
The crystal structure of the ternary complex of T. thermophilus seryl-tRNA synthetase with tRNA(Ser) and a seryl-adenylate analogue reveals a conformational switch in the active site
-
Cusack, S., Yaremchuk, A., and Tukalo, M. (1996) The crystal structure of the ternary complex of T. thermophilus seryl-tRNA synthetase with tRNA(Ser) and a seryl-adenylate analogue reveals a conformational switch in the active site EMBO J. 15, 2834-2842
-
(1996)
EMBO J.
, vol.15
, pp. 2834-2842
-
-
Cusack, S.1
Yaremchuk, A.2
Tukalo, M.3
-
282
-
-
0029644481
-
The structural basis for seryl-adenylate and Ap4A synthesis by seryl-tRNA synthetase
-
Belrhali, H., Yaremchuk, A., Tukalo, M., Berthet-Colominas, C., Rasmussen, B., Bosecke, P., Diat, O., and Cusack, S. (1995) The structural basis for seryl-adenylate and Ap4A synthesis by seryl-tRNA synthetase Structure 3, 341-352
-
(1995)
Structure
, vol.3
, pp. 341-352
-
-
Belrhali, H.1
Yaremchuk, A.2
Tukalo, M.3
Berthet-Colominas, C.4
Rasmussen, B.5
Bosecke, P.6
Diat, O.7
Cusack, S.8
-
283
-
-
33749503497
-
Structures of two bacterial prolyl-tRNA synthetases with and without a cis-editing domain
-
Crepin, T., Yaremchuk, A., Tukalo, M., and Cusack, S. (2006) Structures of two bacterial prolyl-tRNA synthetases with and without a cis-editing domain Structure 14, 1511-1525
-
(2006)
Structure
, vol.14
, pp. 1511-1525
-
-
Crepin, T.1
Yaremchuk, A.2
Tukalo, M.3
Cusack, S.4
-
284
-
-
33646470984
-
Structure of a putative trans-editing enzyme for prolyl-tRNA synthetase from Aeropyrum pernix K1 at 1.7 Å resolution
-
Murayama, K., Kato-Murayama, M., Katsura, K., Uchikubo-Kamo, T., Yamaguchi-Hirafuji, M., Kawazoe, M., Akasaka, R., Hanawa-Suetsugu, K., Hori-Takemoto, C., Terada, T., Shirouzu, M., and Yokoyama, S. (2005) Structure of a putative trans-editing enzyme for prolyl-tRNA synthetase from Aeropyrum pernix K1 at 1.7 Å resolution Acta Crystallogr. F61, 26-29
-
(2005)
Acta Crystallogr.
, vol.61
, pp. 26-29
-
-
Murayama, K.1
Kato-Murayama, M.2
Katsura, K.3
Uchikubo-Kamo, T.4
Yamaguchi-Hirafuji, M.5
Kawazoe, M.6
Akasaka, R.7
Hanawa-Suetsugu, K.8
Hori-Takemoto, C.9
Terada, T.10
Shirouzu, M.11
Yokoyama, S.12
-
285
-
-
0037452726
-
The structural basis of cysteine aminoacylation of tRNAPro by prolyl-tRNA synthetases
-
Kamtekar, S., Kennedy, W. D., Wang, J., Stathopoulos, C., Soll, D., and Steitz, T. A. (2003) The structural basis of cysteine aminoacylation of tRNAPro by prolyl-tRNA synthetases Proc. Natl. Acad. Sci. U.S.A. 100, 1673-1678
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.100
, pp. 1673-1678
-
-
Kamtekar, S.1
Kennedy, W.D.2
Wang, J.3
Stathopoulos, C.4
Soll, D.5
Steitz, T.A.6
-
286
-
-
0038161128
-
Conformational movements and cooperativity upon amino acid, ATP and tRNA binding in threonyl-tRNA synthetase
-
Torres-Larios, A., Sankaranarayanan, R., Rees, B., Dock-Bregeon, A. C., and Moras, D. (2003) Conformational movements and cooperativity upon amino acid, ATP and tRNA binding in threonyl-tRNA synthetase J. Mol. Biol. 331, 201-211
-
(2003)
J. Mol. Biol.
, vol.331
, pp. 201-211
-
-
Torres-Larios, A.1
Sankaranarayanan, R.2
Rees, B.3
Dock-Bregeon, A.C.4
Moras, D.5
-
287
-
-
84857697493
-
Yeast mitochondrial threonyl-tRNA synthetase recognizes tRNA isoacceptors by distinct mechanisms and promotes CUN codon reassignment
-
Ling, J., Peterson, K. M., Simonovic, I., Cho, C., Soll, D., and Simonovic, M. (2012) Yeast mitochondrial threonyl-tRNA synthetase recognizes tRNA isoacceptors by distinct mechanisms and promotes CUN codon reassignment Proc. Natl. Acad. Sci. U.S.A. 109, 3281-3286
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 3281-3286
-
-
Ling, J.1
Peterson, K.M.2
Simonovic, I.3
Cho, C.4
Soll, D.5
Simonovic, M.6
-
288
-
-
0034124849
-
Zinc ion mediated amino acid discrimination by threonyl-tRNA synthetase
-
Sankaranarayanan, R., Dock-Bregeon, A. C., Rees, B., Bovee, M., Caillet, J., Romby, P., Francklyn, C. S., and Moras, D. (2000) Zinc ion mediated amino acid discrimination by threonyl-tRNA synthetase Nat. Struct. Biol. 7, 461-465
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 461-465
-
-
Sankaranarayanan, R.1
Dock-Bregeon, A.C.2
Rees, B.3
Bovee, M.4
Caillet, J.5
Romby, P.6
Francklyn, C.S.7
Moras, D.8
-
289
-
-
0036240949
-
Structural basis of translational control by Escherichia coli threonyl tRNA synthetase
-
Torres-Larios, A., Dock-Bregeon, A. C., Romby, P., Rees, B., Sankaranarayanan, R., Caillet, J., Springer, M., Ehresmann, C., Ehresmann, B., and Moras, D. (2002) Structural basis of translational control by Escherichia coli threonyl tRNA synthetase Nat. Struct. Biol. 9, 343-347
-
(2002)
Nat. Struct. Biol.
, vol.9
, pp. 343-347
-
-
Torres-Larios, A.1
Dock-Bregeon, A.C.2
Romby, P.3
Rees, B.4
Sankaranarayanan, R.5
Caillet, J.6
Springer, M.7
Ehresmann, C.8
Ehresmann, B.9
Moras, D.10
-
290
-
-
8644231651
-
Achieving error-free translation; The mechanism of proofreading of threonyl-tRNA synthetase at atomic resolution
-
Dock-Bregeon, A. C., Rees, B., Torres-Larios, A., Bey, G., Caillet, J., and Moras, D. (2004) Achieving error-free translation; the mechanism of proofreading of threonyl-tRNA synthetase at atomic resolution Mol. Cell 16, 375-386
-
(2004)
Mol. Cell
, vol.16
, pp. 375-386
-
-
Dock-Bregeon, A.C.1
Rees, B.2
Torres-Larios, A.3
Bey, G.4
Caillet, J.5
Moras, D.6
-
291
-
-
70350532229
-
Two complementary enzymes for threonylation of tRNA in crenarchaeota: Crystal structure of Aeropyrum pernix threonyl-tRNA synthetase lacking a cis-editing domain
-
Shimizu, S., Juan, E. C., Sato, Y., Miyashita, Y., Hoque, M. M., Suzuki, K., Sagara, T., Tsunoda, M., Sekiguchi, T., Dock-Bregeon, A. C., Moras, D., and Takenaka, A. (2009) Two complementary enzymes for threonylation of tRNA in crenarchaeota: Crystal structure of Aeropyrum pernix threonyl-tRNA synthetase lacking a cis-editing domain J. Mol. Biol. 394, 286-296
-
(2009)
J. Mol. Biol.
, vol.394
, pp. 286-296
-
-
Shimizu, S.1
Juan, E.C.2
Sato, Y.3
Miyashita, Y.4
Hoque, M.M.5
Suzuki, K.6
Sagara, T.7
Tsunoda, M.8
Sekiguchi, T.9
Dock-Bregeon, A.C.10
Moras, D.11
Takenaka, A.12
-
292
-
-
22444441513
-
A d -amino acid editing module coupled to the translational apparatus in archaea
-
Dwivedi, S., Kruparani, S. P., and Sankaranarayanan, R. (2005) A d -amino acid editing module coupled to the translational apparatus in archaea Nat. Struct. Mol. Biol. 12, 556-557
-
(2005)
Nat. Struct. Mol. Biol.
, vol.12
, pp. 556-557
-
-
Dwivedi, S.1
Kruparani, S.P.2
Sankaranarayanan, R.3
-
293
-
-
33748347516
-
Post-transfer editing mechanism of a d -aminoacyl-tRNA deacylase-like domain in threonyl-tRNA synthetase from archaea
-
Hussain, T., Kruparani, S. P., Pal, B., Dock-Bregeon, A. C., Dwivedi, S., Shekar, M. R., Sureshbabu, K., and Sankaranarayanan, R. (2006) Post-transfer editing mechanism of a d -aminoacyl-tRNA deacylase-like domain in threonyl-tRNA synthetase from archaea EMBO J. 25, 4152-4162
-
(2006)
EMBO J.
, vol.25
, pp. 4152-4162
-
-
Hussain, T.1
Kruparani, S.P.2
Pal, B.3
Dock-Bregeon, A.C.4
Dwivedi, S.5
Shekar, M.R.6
Sureshbabu, K.7
Sankaranarayanan, R.8
-
294
-
-
78650659620
-
Mechanistic insights into cognate substrate discrimination during proofreading in translation
-
Hussain, T., Kamarthapu, V., Kruparani, S. P., Deshmukh, M. V., and Sankaranarayanan, R. (2010) Mechanistic insights into cognate substrate discrimination during proofreading in translation Proc. Natl. Acad. Sci. U.S.A. 107, 22117-22121
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 22117-22121
-
-
Hussain, T.1
Kamarthapu, V.2
Kruparani, S.P.3
Deshmukh, M.V.4
Sankaranarayanan, R.5
-
295
-
-
70350357219
-
Crystal structures and biochemical analyses suggest a unique mechanism and role for human glycyl-tRNA synthetase in Ap4A homeostasis
-
Guo, R. T., Chong, Y. E., Guo, M., and Yang, X. L. (2009) Crystal structures and biochemical analyses suggest a unique mechanism and role for human glycyl-tRNA synthetase in Ap4A homeostasis J. Biol. Chem. 284, 28968-28976
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 28968-28976
-
-
Guo, R.T.1
Chong, Y.E.2
Guo, M.3
Yang, X.L.4
-
296
-
-
34547224267
-
Long-range structural effects of a Charcot-Marie-Tooth disease-causing mutation in human glycyl-tRNA synthetase
-
Xie, W., Nangle, L. A., Zhang, W., Schimmel, P., and Yang, X. L. (2007) Long-range structural effects of a Charcot-Marie-Tooth disease-causing mutation in human glycyl-tRNA synthetase Proc. Natl. Acad. Sci. U.S.A. 104, 9976-9981
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 9976-9981
-
-
Xie, W.1
Nangle, L.A.2
Zhang, W.3
Schimmel, P.4
Yang, X.L.5
-
297
-
-
34250340882
-
Crystal structure of human wildtype and S581L-mutant glycyl-tRNA synthetase, an enzyme underlying distal spinal muscular atrophy
-
Cader, M. Z., Ren, J., James, P. A., Bird, L. E., Talbot, K., and Stammers, D. K. (2007) Crystal structure of human wildtype and S581L-mutant glycyl-tRNA synthetase, an enzyme underlying distal spinal muscular atrophy FEBS Lett. 581, 2959-2964
-
(2007)
FEBS Lett.
, vol.581
, pp. 2959-2964
-
-
Cader, M.Z.1
Ren, J.2
James, P.A.3
Bird, L.E.4
Talbot, K.5
Stammers, D.K.6
-
298
-
-
0030934790
-
Crystal structure analysis of the activation of histidine by Thermus thermophilus histidyl-tRNA synthetase
-
Aberg, A., Yaremchuk, A., Tukalo, M., Rasmussen, B., and Cusack, S. (1997) Crystal structure analysis of the activation of histidine by Thermus thermophilus histidyl-tRNA synthetase Biochemistry 36, 3084-3094
-
(1997)
Biochemistry
, vol.36
, pp. 3084-3094
-
-
Aberg, A.1
Yaremchuk, A.2
Tukalo, M.3
Rasmussen, B.4
Cusack, S.5
-
299
-
-
0030788568
-
The first step of aminoacylation at the atomic level in histidyl-tRNA synthetase
-
Arnez, J. G., Augustine, J. G., Moras, D., and Francklyn, C. S. (1997) The first step of aminoacylation at the atomic level in histidyl-tRNA synthetase Proc. Natl. Acad. Sci. U.S.A. 94, 7144-7149
-
(1997)
Proc. Natl. Acad. Sci. U.S.A.
, vol.94
, pp. 7144-7149
-
-
Arnez, J.G.1
Augustine, J.G.2
Moras, D.3
Francklyn, C.S.4
-
300
-
-
77349101493
-
Crystal structures of trypanosomal histidyl-tRNA synthetase illuminate differences between eukaryotic and prokaryotic homologs
-
Merritt, E. A., Arakaki, T. L., Gillespie, J. R., Larson, E. T., Kelley, A., Mueller, N., Napuli, A. J., Kim, J., Zhang, L., Verlinde, C. L., Fan, E., Zucker, F., Buckner, F. S., van Voorhis, W. C., and Hol, W. G. (2010) Crystal structures of trypanosomal histidyl-tRNA synthetase illuminate differences between eukaryotic and prokaryotic homologs J. Mol. Biol. 397, 481-494
-
(2010)
J. Mol. Biol.
, vol.397
, pp. 481-494
-
-
Merritt, E.A.1
Arakaki, T.L.2
Gillespie, J.R.3
Larson, E.T.4
Kelley, A.5
Mueller, N.6
Napuli, A.J.7
Kim, J.8
Zhang, L.9
Verlinde, C.L.10
Fan, E.11
Zucker, F.12
Buckner, F.S.13
Van Voorhis, W.C.14
Hol, W.G.15
-
301
-
-
0033592311
-
Cooperative structural dynamics and a novel fidelity mechanism in histidyl-tRNA synthetase
-
Qiu X, J. C., Blackburn, M. N., Chhohan, I. K., Hibbs, M., and Abdel-Meguid, S. S. (1999) Cooperative structural dynamics and a novel fidelity mechanism in histidyl-tRNA synthetase Biochemistry 38, 12296-12304
-
(1999)
Biochemistry
, vol.38
, pp. 12296-12304
-
-
Qiu, X.J.C.1
Blackburn, M.N.2
Chhohan, I.K.3
Hibbs, M.4
Abdel-Meguid, S.S.5
-
302
-
-
0033571581
-
Synthesis of aspartyl-tRNA(Asp) in Escherichia coli: A snapshot of the second step
-
Eiler, S., Dock-Bregeon, A., Moulinier, L., Thierry, J. C., and Moras, D. (1999) Synthesis of aspartyl-tRNA(Asp) in Escherichia coli: A snapshot of the second step EMBO J. 18, 6532-6541
-
(1999)
EMBO J.
, vol.18
, pp. 6532-6541
-
-
Eiler, S.1
Dock-Bregeon, A.2
Moulinier, L.3
Thierry, J.C.4
Moras, D.5
-
303
-
-
0028263809
-
Crystal structure of a prokaryotic aspartyl tRNA-synthetase
-
Delarue, M., Poterszman, A., Nikonov, S., Garber, M., Moras, D., and Thierry, J. C. (1994) Crystal structure of a prokaryotic aspartyl tRNA-synthetase EMBO J. 13, 3219-3229
-
(1994)
EMBO J.
, vol.13
, pp. 3219-3229
-
-
Delarue, M.1
Poterszman, A.2
Nikonov, S.3
Garber, M.4
Moras, D.5
Thierry, J.C.6
-
304
-
-
0028104763
-
Synthesis and recognition of aspartyl-adenylate by Thermus thermophilus aspartyl-tRNA synthetase
-
Poterszman, A., Delarue, M., Thierry, J. C., and Moras, D. (1994) Synthesis and recognition of aspartyl-adenylate by Thermus thermophilus aspartyl-tRNA synthetase J. Mol. Biol. 244, 158-167
-
(1994)
J. Mol. Biol.
, vol.244
, pp. 158-167
-
-
Poterszman, A.1
Delarue, M.2
Thierry, J.C.3
Moras, D.4
-
305
-
-
0028084909
-
The active site of yeast aspartyl-tRNA synthetase: Structural and functional aspects of the aminoacylation reaction
-
Cavarelli, J., Eriani, G., Rees, B., Ruff, M., Boeglin, M., Mitschler, A., Martin, F., Gangloff, J., Thierry, J. C., and Moras, D. (1994) The active site of yeast aspartyl-tRNA synthetase: Structural and functional aspects of the aminoacylation reaction EMBO J. 13, 327-337
-
(1994)
EMBO J.
, vol.13
, pp. 327-337
-
-
Cavarelli, J.1
Eriani, G.2
Rees, B.3
Ruff, M.4
Boeglin, M.5
Mitschler, A.6
Martin, F.7
Gangloff, J.8
Thierry, J.C.9
Moras, D.10
-
306
-
-
0034705342
-
The free yeast aspartyl-tRNA synthetase differs from the tRNA(Asp)-complexed enzyme by structural changes in the catalytic site, hinge region, and anticodon-binding domain
-
Sauter, C., Lorber, B., Cavarelli, J., Moras, D., and Giege, R. (2000) The free yeast aspartyl-tRNA synthetase differs from the tRNA(Asp)-complexed enzyme by structural changes in the catalytic site, hinge region, and anticodon-binding domain J. Mol. Biol. 299, 1313-1324
-
(2000)
J. Mol. Biol.
, vol.299
, pp. 1313-1324
-
-
Sauter, C.1
Lorber, B.2
Cavarelli, J.3
Moras, D.4
Giege, R.5
-
307
-
-
0034705343
-
Aspartyl tRNA-synthetase from Escherichia coli: Flexibility and adaptability to the substrates
-
Rees, B., Webster, G., Delarue, M., Boeglin, M., and Moras, D. (2000) Aspartyl tRNA-synthetase from Escherichia coli: Flexibility and adaptability to the substrates J. Mol. Biol. 299, 1157-1164
-
(2000)
J. Mol. Biol.
, vol.299
, pp. 1157-1164
-
-
Rees, B.1
Webster, G.2
Delarue, M.3
Boeglin, M.4
Moras, D.5
-
308
-
-
0034674161
-
An intermediate step in the recognition of tRNA(Asp) by aspartyl-tRNA synthetase
-
Briand, C., Poterszman, A., Eiler, S., Webster, G., Thierry, J., and Moras, D. (2000) An intermediate step in the recognition of tRNA(Asp) by aspartyl-tRNA synthetase J. Mol. Biol. 299, 1051-1060
-
(2000)
J. Mol. Biol.
, vol.299
, pp. 1051-1060
-
-
Briand, C.1
Poterszman, A.2
Eiler, S.3
Webster, G.4
Thierry, J.5
Moras, D.6
-
309
-
-
0036005618
-
Comparative analysis of space-grown and earth-grown crystals of an aminoacyl-tRNA synthetase: Space-grown crystals are more useful for structural determination
-
Ng, J. D., Sauter, C., Lorber, B., Kirkland, N., Arnez, J., and Giege, R. (2002) Comparative analysis of space-grown and earth-grown crystals of an aminoacyl-tRNA synthetase: Space-grown crystals are more useful for structural determination Acta Crystallogr. D58, 645-652
-
(2002)
Acta Crystallogr.
, vol.58
, pp. 645-652
-
-
Ng, J.D.1
Sauter, C.2
Lorber, B.3
Kirkland, N.4
Arnez, J.5
Giege, R.6
-
310
-
-
0037390217
-
Non-discriminating and discriminating aspartyl-tRNA synthetases differ in the anticodon-binding domain
-
Charron, C., Roy, H., Blaise, M., Giege, R., and Kern, D. (2003) Non-discriminating and discriminating aspartyl-tRNA synthetases differ in the anticodon-binding domain EMBO J. 22, 1632-1643
-
(2003)
EMBO J.
, vol.22
, pp. 1632-1643
-
-
Charron, C.1
Roy, H.2
Blaise, M.3
Giege, R.4
Kern, D.5
-
311
-
-
77956871565
-
Crystal structure of a transfer-ribonucleoprotein particle that promotes asparagine formation
-
Blaise, M., Bailly, M., Frechin, M., Behrens, M. A., Fischer, F., Oliveira, C. L., Becker, H. D., Pedersen, J. S., Thirup, S., and Kern, D. (2010) Crystal structure of a transfer-ribonucleoprotein particle that promotes asparagine formation EMBO J. 29, 3118-3129
-
(2010)
EMBO J.
, vol.29
, pp. 3118-3129
-
-
Blaise, M.1
Bailly, M.2
Frechin, M.3
Behrens, M.A.4
Fischer, F.5
Oliveira, C.L.6
Becker, H.D.7
Pedersen, J.S.8
Thirup, S.9
Kern, D.10
-
312
-
-
71949100653
-
Crystal structure of the aspartyl-tRNA synthetase from Entamoeba histolytica
-
Merritt, E. A., Arakaki, T. L., Larson, E. T., Kelley, A., Mueller, N., Napuli, A. J., Zhang, L., Deditta, G., Luft, J., Verlinde, C. L., Fan, E., Zucker, F., Buckner, F. S., Van Voorhis, W. C., and Hol, W. G. (2010) Crystal structure of the aspartyl-tRNA synthetase from Entamoeba histolytica Mol. Biochem. Parasitol. 169, 95-100
-
(2010)
Mol. Biochem. Parasitol.
, vol.169
, pp. 95-100
-
-
Merritt, E.A.1
Arakaki, T.L.2
Larson, E.T.3
Kelley, A.4
Mueller, N.5
Napuli, A.J.6
Zhang, L.7
Deditta, G.8
Luft, J.9
Verlinde, C.L.10
Fan, E.11
Zucker, F.12
Buckner, F.S.13
Van Voorhis, W.C.14
Hol, W.G.15
-
313
-
-
34748877705
-
Structure of the nondiscriminating aspartyl-tRNA synthetase from the crenarchaeon Sulfolobus tokodaii strain 7 reveals the recognition mechanism for two different tRNA anticodons
-
Sato, Y., Maeda, Y., Shimizu, S., Hossain, M. T., Ubukata, S., Suzuki, K., Sekiguchi, T., and Takenaka, A. (2007) Structure of the nondiscriminating aspartyl-tRNA synthetase from the crenarchaeon Sulfolobus tokodaii strain 7 reveals the recognition mechanism for two different tRNA anticodons Acta Crystallogr. D63, 1042-1047
-
(2007)
Acta Crystallogr.
, vol.63
, pp. 1042-1047
-
-
Sato, Y.1
Maeda, Y.2
Shimizu, S.3
Hossain, M.T.4
Ubukata, S.5
Suzuki, K.6
Sekiguchi, T.7
Takenaka, A.8
-
314
-
-
33746752845
-
Structural basis of the water-assisted asparagine recognition by asparaginyl-tRNA synthetase
-
Iwasaki, W., Sekine, S., Kuroishi, C., Kuramitsu, S., Shirouzu, M., and Yokoyama, S. (2006) Structural basis of the water-assisted asparagine recognition by asparaginyl-tRNA synthetase J. Mol. Biol. 360, 329-342
-
(2006)
J. Mol. Biol.
, vol.360
, pp. 329-342
-
-
Iwasaki, W.1
Sekine, S.2
Kuroishi, C.3
Kuramitsu, S.4
Shirouzu, M.5
Yokoyama, S.6
-
315
-
-
0034710994
-
Structural studies of lysyl-tRNA synthetase: Conformational changes induced by substrate binding
-
Onesti, S., Desogus, G., Brevet, A., Chen, J., Plateau, P., Blanquet, S., and Brick, P. (2000) Structural studies of lysyl-tRNA synthetase: Conformational changes induced by substrate binding Biochemistry 39, 12853-12861
-
(2000)
Biochemistry
, vol.39
, pp. 12853-12861
-
-
Onesti, S.1
Desogus, G.2
Brevet, A.3
Chen, J.4
Plateau, P.5
Blanquet, S.6
Brick, P.7
-
316
-
-
0034713835
-
Active site of lysyl-tRNA synthetase: Structural studies of the adenylation reaction
-
Desogus, G., Todone, F., Brick, P., and Onesti, S. (2000) Active site of lysyl-tRNA synthetase: Structural studies of the adenylation reaction Biochemistry 39, 8418-8425
-
(2000)
Biochemistry
, vol.39
, pp. 8418-8425
-
-
Desogus, G.1
Todone, F.2
Brick, P.3
Onesti, S.4
-
317
-
-
40649090424
-
Crystal structure of tetrameric form of human lysyl-tRNA synthetase: Implications for multisynthetase complex formation
-
Guo, M., Ignatov, M., Musier-Forsyth, K., Schimmel, P., and Yang, X. L. (2008) Crystal structure of tetrameric form of human lysyl-tRNA synthetase: Implications for multisynthetase complex formation Proc. Natl. Acad. Sci. U.S.A. 105, 2331-2336
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 2331-2336
-
-
Guo, M.1
Ignatov, M.2
Musier-Forsyth, K.3
Schimmel, P.4
Yang, X.L.5
-
318
-
-
66749189601
-
Two crystal structures of lysyl-tRNA synthetase from Bacillus stearothermophilus in complex with lysyladenylate-like compounds: Insights into the irreversible formation of the enzyme-bound adenylate of l -lysine hydroxamate
-
Sakurama, H., Takita, T., Mikami, B., Itoh, T., Yasukawa, K., and Inouye, K. (2009) Two crystal structures of lysyl-tRNA synthetase from Bacillus stearothermophilus in complex with lysyladenylate-like compounds: Insights into the irreversible formation of the enzyme-bound adenylate of l -lysine hydroxamate J. Biochem. 145, 555-563
-
(2009)
J. Biochem.
, vol.145
, pp. 555-563
-
-
Sakurama, H.1
Takita, T.2
Mikami, B.3
Itoh, T.4
Yasukawa, K.5
Inouye, K.6
-
319
-
-
33748277245
-
The crystal structure of the ternary complex of phenylalanyl-tRNA synthetase with tRNAPhe and a phenylalanyl-adenylate analogue reveals a conformational switch of the CCA end
-
Moor, N., Kotik-Kogan, O., Tworowski, D., Sukhanova, M., and Safro, M. (2006) The crystal structure of the ternary complex of phenylalanyl-tRNA synthetase with tRNAPhe and a phenylalanyl-adenylate analogue reveals a conformational switch of the CCA end Biochemistry 45, 10572-10583
-
(2006)
Biochemistry
, vol.45
, pp. 10572-10583
-
-
Moor, N.1
Kotik-Kogan, O.2
Tworowski, D.3
Sukhanova, M.4
Safro, M.5
-
320
-
-
0034764075
-
Structure at 2.6 Å resolution of phenylalanyl-tRNA synthetase complexed with phenylalanyl-adenylate in the presence of manganese
-
Fishman, R., Ankilova, V., Moor, N., and Safro, M. (2001) Structure at 2.6 Å resolution of phenylalanyl-tRNA synthetase complexed with phenylalanyl-adenylate in the presence of manganese Acta Crystallogr. D57, 1534-1544
-
(2001)
Acta Crystallogr.
, vol.57
, pp. 1534-1544
-
-
Fishman, R.1
Ankilova, V.2
Moor, N.3
Safro, M.4
-
321
-
-
67650488958
-
Eukaryotic cytosolic and mitochondrial phenylalanyl-tRNA synthetases catalyze the charging of tRNA with the meta-tyrosine
-
Klipcan, L., Moor, N., Kessler, N., and Safro, M. G. (2009) Eukaryotic cytosolic and mitochondrial phenylalanyl-tRNA synthetases catalyze the charging of tRNA with the meta-tyrosine Proc. Natl. Acad. Sci. U.S.A. 106, 11045-11048
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 11045-11048
-
-
Klipcan, L.1
Moor, N.2
Kessler, N.3
Safro, M.G.4
-
322
-
-
59749095983
-
Crystallization and X-ray analysis of human cytoplasmic phenylalanyl-tRNA synthetase
-
Finarov, I., Moor, N., Kessler, N., and Safro, M. (2009) Crystallization and X-ray analysis of human cytoplasmic phenylalanyl-tRNA synthetase Acta Crystallogr. F65, 93-97
-
(2009)
Acta Crystallogr.
, vol.65
, pp. 93-97
-
-
Finarov, I.1
Moor, N.2
Kessler, N.3
Safro, M.4
-
323
-
-
77649106739
-
Structure of human cytosolic phenylalanyl-tRNA synthetase: Evidence for kingdom-specific design of the active sites and tRNA binding patterns
-
Finarov, I., Moor, N., Kessler, N., Klipcan, L., and Safro, M. G. (2010) Structure of human cytosolic phenylalanyl-tRNA synthetase: Evidence for kingdom-specific design of the active sites and tRNA binding patterns Structure 18, 343-353
-
(2010)
Structure
, vol.18
, pp. 343-353
-
-
Finarov, I.1
Moor, N.2
Kessler, N.3
Klipcan, L.4
Safro, M.G.5
-
324
-
-
80055075622
-
Bacterial and eukaryotic phenylalanyl-tRNA synthetases catalyze misaminoacylation of tRNA(Phe) with 3,4-dihydroxy- l -phenylalanine
-
Moor, N., Klipcan, L., and Safro, M. G. (2011) Bacterial and eukaryotic phenylalanyl-tRNA synthetases catalyze misaminoacylation of tRNA(Phe) with 3,4-dihydroxy- l -phenylalanine Chem. Biol. 18, 1221-1229
-
(2011)
Chem. Biol.
, vol.18
, pp. 1221-1229
-
-
Moor, N.1
Klipcan, L.2
Safro, M.G.3
-
325
-
-
78650771934
-
Idiosyncrasy and identity in the prokaryotic Phe-system: Crystal structure of E. coli phenylalanyl-tRNA synthetase complexed with phenylalanine and AMP
-
Mermershtain, I., Finarov, I., Klipcan, L., Kessler, N., Rozenberg, H., and Safro, M. G. (2011) Idiosyncrasy and identity in the prokaryotic Phe-system: Crystal structure of E. coli phenylalanyl-tRNA synthetase complexed with phenylalanine and AMP Protein Sci. 20, 160-167
-
(2011)
Protein Sci.
, vol.20
, pp. 160-167
-
-
Mermershtain, I.1
Finarov, I.2
Klipcan, L.3
Kessler, N.4
Rozenberg, H.5
Safro, M.G.6
-
326
-
-
33749518710
-
Structural and mutational studies of the amino acid-editing domain from archaeal/eukaryal phenylalanyl-tRNA synthetase
-
Sasaki, H. M., Sekine, S., Sengoku, T., Fukunaga, R., Hattori, M., Utsunomiya, Y., Kuroishi, C., Kuramitsu, S., Shirouzu, M., and Yokoyama, S. (2006) Structural and mutational studies of the amino acid-editing domain from archaeal/eukaryal phenylalanyl-tRNA synthetase Proc. Natl. Acad. Sci. U.S.A. 103, 14744-14749
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 14744-14749
-
-
Sasaki, H.M.1
Sekine, S.2
Sengoku, T.3
Fukunaga, R.4
Hattori, M.5
Utsunomiya, Y.6
Kuroishi, C.7
Kuramitsu, S.8
Shirouzu, M.9
Yokoyama, S.10
-
327
-
-
0033515439
-
Crystal structures of phenylalanyl-tRNA synthetase complexed with phenylalanine and a phenylalanyl-adenylate analogue
-
Reshetnikova, L., Moor, N., Lavrik, O., and Vassylyev, D. G. (1999) Crystal structures of phenylalanyl-tRNA synthetase complexed with phenylalanine and a phenylalanyl-adenylate analogue J. Mol. Biol. 287, 555-568
-
(1999)
J. Mol. Biol.
, vol.287
, pp. 555-568
-
-
Reshetnikova, L.1
Moor, N.2
Lavrik, O.3
Vassylyev, D.G.4
-
328
-
-
38849085321
-
A genetically encoded diazirine photocrosslinker in Escherichia coli
-
Tippmann, E. M., Liu, W., Summerer, D., Mack, A. V., and Schultz, P. G. (2007) A genetically encoded diazirine photocrosslinker in Escherichia coli ChemBioChem 8, 2210-2214
-
(2007)
ChemBioChem
, vol.8
, pp. 2210-2214
-
-
Tippmann, E.M.1
Liu, W.2
Summerer, D.3
MacK, A.V.4
Schultz, P.G.5
-
329
-
-
41649091678
-
Rational protein engineering in action: The first crystal structure of a phenylalanine tRNA synthetase from Staphylococcus haemolyticus
-
Evdokimov, A. G., Mekel, M., Hutchings, K., Narasimhan, L., Holler, T., McGrath, T., Beattie, B., Fauman, E., Yan, C., Heaslet, H., Walter, R., Finzel, B., Ohren, J., McConnell, P., Braden, T., Sun, F., Spessard, C., Banotai, C., Al-Kassim, L., Ma, W., Wengender, P., Kole, D., Garceau, N., Toogood, P., and Liu, J. (2008) Rational protein engineering in action: The first crystal structure of a phenylalanine tRNA synthetase from Staphylococcus haemolyticus J. Struct. Biol. 162, 152-169
-
(2008)
J. Struct. Biol.
, vol.162
, pp. 152-169
-
-
Evdokimov, A.G.1
Mekel, M.2
Hutchings, K.3
Narasimhan, L.4
Holler, T.5
McGrath, T.6
Beattie, B.7
Fauman, E.8
Yan, C.9
Heaslet, H.10
Walter, R.11
Finzel, B.12
Ohren, J.13
McConnell, P.14
Braden, T.15
Sun, F.16
Spessard, C.17
Banotai, C.18
Al-Kassim, L.19
Ma, W.20
Wengender, P.21
Kole, D.22
Garceau, N.23
Toogood, P.24
Liu, J.25
more..
-
330
-
-
37349119604
-
Structural Basis for the Recognition of para-Benzoyl- l -phenylalanine by Evolved Aminoacyl-tRNA Synthetases
-
Liu, W., Alfonta, L., Mack, A. V., and Schultz, P. G. (2007) Structural Basis for the Recognition of para-Benzoyl- l -phenylalanine by Evolved Aminoacyl-tRNA Synthetases Angew. Chem. 119, 6185-6187
-
(2007)
Angew. Chem.
, vol.119
, pp. 6185-6187
-
-
Liu, W.1
Alfonta, L.2
MacK, A.V.3
Schultz, P.G.4
-
331
-
-
12844282196
-
Breaking sieve for steric exclusion of a noncognate amino acid from active site of a tRNA synthetase
-
Swairjo, M. A. and Schimmel, P. R. (2005) Breaking sieve for steric exclusion of a noncognate amino acid from active site of a tRNA synthetase Proc. Natl. Acad. Sci. U.S.A. 102, 988-993
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 988-993
-
-
Swairjo, M.A.1
Schimmel, P.R.2
-
332
-
-
1842526081
-
Alanyl-tRNA synthetase crystal structure and design for acceptor-stem recognition
-
Swairjo, M. A., Otero, F. J., Yang, X. L., Lovato, M. A., Skene, R. J., McRee, D. E., Ribas de Pouplana, L., and Schimmel, P. (2004) Alanyl-tRNA synthetase crystal structure and design for acceptor-stem recognition Mol. Cell 13, 829-841
-
(2004)
Mol. Cell
, vol.13
, pp. 829-841
-
-
Swairjo, M.A.1
Otero, F.J.2
Yang, X.L.3
Lovato, M.A.4
Skene, R.J.5
McRee, D.E.6
Ribas De Pouplana, L.7
Schimmel, P.8
-
333
-
-
66649089722
-
Unique protein architecture of alanyl-tRNA synthetase for aminoacylation, editing, and dimerization
-
Naganuma, M., Sekine, S., Fukunaga, R., and Yokoyama, S. (2009) Unique protein architecture of alanyl-tRNA synthetase for aminoacylation, editing, and dimerization Proc. Natl. Acad. Sci. U.S.A. 106, 8489-8494
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 8489-8494
-
-
Naganuma, M.1
Sekine, S.2
Fukunaga, R.3
Yokoyama, S.4
-
334
-
-
23844487072
-
Molecular basis of alanine discrimination in editing site
-
Sokabe, M., Okada, A., Yao, M., Nakashima, T., and Tanaka, I. (2005) Molecular basis of alanine discrimination in editing site Proc. Natl. Acad. Sci. U.S.A. 102, 11669-11674
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 11669-11674
-
-
Sokabe, M.1
Okada, A.2
Yao, M.3
Nakashima, T.4
Tanaka, I.5
-
335
-
-
48849085808
-
Structure of Desulfitobacterium hafniense PylSc, a pyrrolysyl-tRNA synthetase
-
Lee, M. M., Jiang, R., Jain, R., Larue, R. C., Krzycki, J., and Chan, M. K. (2008) Structure of Desulfitobacterium hafniense PylSc, a pyrrolysyl-tRNA synthetase Biochem. Biophys. Res. Commun. 374, 470-474
-
(2008)
Biochem. Biophys. Res. Commun.
, vol.374
, pp. 470-474
-
-
Lee, M.M.1
Jiang, R.2
Jain, R.3
Larue, R.C.4
Krzycki, J.5
Chan, M.K.6
-
336
-
-
34547470915
-
Structure of pyrrolysyl-tRNA synthetase, an archaeal enzyme for genetic code innovation
-
Kavran, J. M., Gundllapalli, S., O'Donoghue, P., Englert, M., Soll, D., and Steitz, T. A. (2007) Structure of pyrrolysyl-tRNA synthetase, an archaeal enzyme for genetic code innovation Proc. Natl. Acad. Sci. U.S.A. 104, 11268-11273
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 11268-11273
-
-
Kavran, J.M.1
Gundllapalli, S.2
O'Donoghue, P.3
Englert, M.4
Soll, D.5
Steitz, T.A.6
-
337
-
-
42249114824
-
Crystallographic studies on multiple conformational states of active-site loops in pyrrolysyl-tRNA synthetase
-
Yanagisawa, T., Ishii, R., Fukunaga, R., Kobayashi, T., Sakamoto, K., and Yokoyama, S. (2008) Crystallographic studies on multiple conformational states of active-site loops in pyrrolysyl-tRNA synthetase J. Mol. Biol. 378, 634-652
-
(2008)
J. Mol. Biol.
, vol.378
, pp. 634-652
-
-
Yanagisawa, T.1
Ishii, R.2
Fukunaga, R.3
Kobayashi, T.4
Sakamoto, K.5
Yokoyama, S.6
-
339
-
-
0019852252
-
Purification and properties of alanine tRNA synthetase from Escherichia coli. A tetramer of identical subunits
-
Putney, S. D., Sauer, R. T., and Schimmel, P. R. (1981) Purification and properties of alanine tRNA synthetase from Escherichia coli. A tetramer of identical subunits J. Biol. Chem. 256, 198-204
-
(1981)
J. Biol. Chem.
, vol.256
, pp. 198-204
-
-
Putney, S.D.1
Sauer, R.T.2
Schimmel, P.R.3
-
340
-
-
33748785965
-
Pre-transfer editing by class II prolyl-tRNA synthetase: Role of aminoacylation active site in "selective release" of noncognate amino acids
-
Hati, S., Ziervogel, B., Sternjohn, J., Wong, F. C., Nagan, M. C., Rosen, A. E., Siliciano, P. G., Chihade, J. W., and Musier-Forsyth, K. (2006) Pre-transfer editing by class II prolyl-tRNA synthetase: Role of aminoacylation active site in "selective release" of noncognate amino acids J. Biol. Chem. 281, 27862-27872
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 27862-27872
-
-
Hati, S.1
Ziervogel, B.2
Sternjohn, J.3
Wong, F.C.4
Nagan, M.C.5
Rosen, A.E.6
Siliciano, P.G.7
Chihade, J.W.8
Musier-Forsyth, K.9
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