메뉴 건너뛰기




Volumn 394, Issue 2, 2006, Pages 399-407

Crystal structures of the editing domain of Escherichia coli leucyl-tRNA synthetase and its complexes with Met and Ile reveal a lock-and-key mechanism for amino acid discrimination

Author keywords

Aminoacyl tRNA synthetase; Aminoacylation; Editing domain; Lock and key mechanism; Recognition

Indexed keywords

AMINO ACIDS; CRYSTAL STRUCTURE; ENZYME KINETICS; PROTEINS; RNA; SYNTHESIS (CHEMICAL);

EID: 33644748247     PISSN: 02646021     EISSN: None     Source Type: Journal    
DOI: 10.1042/BJ20051249     Document Type: Article
Times cited : (29)

References (34)
  • 1
    • 0034053846 scopus 로고    scopus 로고
    • Aminoacyl-tRNA synthetases, the genetic code, and the evolutionary process
    • Woese, C., Olsen, G. J., Ibba, M. and Soll, D. (2000) Aminoacyl-tRNA synthetases, the genetic code, and the evolutionary process. Microbiol. Mol. Biol. Rev. 64, 202-236
    • (2000) Microbiol. Mol. Biol. Rev. , vol.64 , pp. 202-236
    • Woese, C.1    Olsen, G.J.2    Ibba, M.3    Soll, D.4
  • 2
    • 0024278430 scopus 로고
    • Isoleucyl-tRNA synthetase from baker's yeast and from Escherichia coli MRE 600. Discrimination of 20 amino acids in aminoacylation of tRNA(IIe)-C-C-A
    • Freist, W., Sternbach, H. and Cramer, F. (1988) Isoleucyl-tRNA synthetase from baker's yeast and from Escherichia coli MRE 600. Discrimination of 20 amino acids in aminoacylation of tRNA(IIe)-C-C-A. Eur. J. Biochem. 173, 27-34
    • (1988) Eur. J. Biochem. , vol.173 , pp. 27-34
    • Freist, W.1    Sternbach, H.2    Cramer, F.3
  • 3
    • 0027255483 scopus 로고
    • Cognition, mechanism, and evolutionary relationships in aminoacyl-tRNA synthetases
    • Carter, Jr, C. W. (1993) Cognition, mechanism, and evolutionary relationships in aminoacyl-tRNA synthetases. Annu. Rev. Biochem. 62, 715-748
    • (1993) Annu. Rev. Biochem. , vol.62 , pp. 715-748
    • Carter Jr., C.W.1
  • 4
    • 3643114575 scopus 로고    scopus 로고
    • Universal rules and idiosyncratic features in tRNA identity
    • Giege, R., Sissler, M. and Florentz, C. (1998) Universal rules and idiosyncratic features in tRNA identity. Nucleic Acids Res. 26, 5017-5035
    • (1998) Nucleic Acids Res. , vol.26 , pp. 5017-5035
    • Giege, R.1    Sissler, M.2    Florentz, C.3
  • 8
    • 0034657687 scopus 로고    scopus 로고
    • The 2 Å crystal structure of leucyl-tRNA synthetase and its complex with a leucyl-adenylate analogue
    • Cusack, S., Yaremchuk, A. and Tukalo, M. (2000) The 2 Å crystal structure of leucyl-tRNA synthetase and its complex with a leucyl-adenylate analogue. EMBO J. 19, 2351-2361
    • (2000) EMBO J. , vol.19 , pp. 2351-2361
    • Cusack, S.1    Yaremchuk, A.2    Tukalo, M.3
  • 10
    • 0017326738 scopus 로고
    • Editing mechanisms in protein synthesis. Rejection of Val by the isoleucyl-tRNA synthetase
    • Fersht, A. R. (1977) Editing mechanisms in protein synthesis. Rejection of Val by the isoleucyl-tRNA synthetase. Biochemistry 16, 1025-1030
    • (1977) Biochemistry , vol.16 , pp. 1025-1030
    • Fersht, A.R.1
  • 11
    • 0029854940 scopus 로고    scopus 로고
    • Aminoacylation error correction
    • Lin, L., Hale, S. P. and Schimmel, P. (1996) Aminoacylation error correction. Nature (London) 384, 33-34
    • (1996) Nature (London) , vol.384 , pp. 33-34
    • Lin, L.1    Hale, S.P.2    Schimmel, P.3
  • 12
    • 0023046295 scopus 로고
    • The proofreading of hydroxy analogues of leucine and Ile by leucyl-tRNA synthetases from E. coli and yeast
    • Englisch, S., Englisch, U., von der Haar, F. and Cramer, F. (1986) The proofreading of hydroxy analogues of leucine and Ile by leucyl-tRNA synthetases from E. coli and yeast. Nucleic Acids Res. 14, 7529-7539
    • (1986) Nucleic Acids Res. , vol.14 , pp. 7529-7539
    • Englisch, S.1    Englisch, U.2    Von Der Haar, F.3    Cramer, F.4
  • 13
    • 0034612210 scopus 로고    scopus 로고
    • CP1 domain in Escherichia coli leucyl-tRNA synthetase is crucial for its editing function
    • Chen, J. F., Guo, N. N., Li, T., Wang, E. D. and Wang, Y. L. (2000) CP1 domain in Escherichia coli leucyl-tRNA synthetase is crucial for its editing function. Biochemistry 39, 6726-6731
    • (2000) Biochemistry , vol.39 , pp. 6726-6731
    • Chen, J.F.1    Guo, N.N.2    Li, T.3    Wang, E.D.4    Wang, Y.L.5
  • 15
    • 12344309250 scopus 로고    scopus 로고
    • Crystal structure of leucyl-tRNA synthetase from the archaeon Pyrococcus horikoshii reveals a novel editing domain orientation
    • Fukunaga, R. and Yokoyama, S. (2005) Crystal structure of leucyl-tRNA synthetase from the archaeon Pyrococcus horikoshii reveals a novel editing domain orientation. J. Mol. Biol. 346, 57-71
    • (2005) J. Mol. Biol. , vol.346 , pp. 57-71
    • Fukunaga, R.1    Yokoyama, S.2
  • 18
    • 0033213239 scopus 로고    scopus 로고
    • The finer things in X-ray diffraction data collection. Acta Crystallogr
    • Pflugrath, J. W. (1999) The finer things in X-ray diffraction data collection. Acta Crystallogr. Sect. D Biol. Crystallogr. 55, 1718-1725
    • (1999) Sect. D Biol. Crystallogr. , vol.55 , pp. 1718-1725
    • Pflugrath, J.W.1
  • 20
    • 84889120137 scopus 로고
    • Improved methods for building protein models in electron density maps and the location of errors in these models
    • Jones, T. A., Zou, J. Y., Cowan, S. W. and Kjeldgaard, M. (1991) Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr. Sect. A Found. Crystallogr. 47, 110-119
    • (1991) Acta Crystallogr. Sect. A Found. Crystallogr. , vol.47 , pp. 110-119
    • Jones, T.A.1    Zou, J.Y.2    Cowan, S.W.3    Kjeldgaard, M.4
  • 22
    • 0000243829 scopus 로고
    • PROCHECK: A program to check the stereochemical quality of protein structures
    • Laskowski, R. A. M., Moss, D. S. and Thornton, J. M. (1993) PROCHECK: a program to check the stereochemical quality of protein structures. J. Appl. Crystallogr. 26, 283-291
    • (1993) J. Appl. Crystallogr. , vol.26 , pp. 283-291
    • Laskowski, R.A.M.1    Moss, D.S.2    Thornton, J.M.3
  • 23
    • 0346096859 scopus 로고    scopus 로고
    • Molecular dissection of a critical specificity determinant within the amino acid editing domain of leucyl-tRNA synthetase
    • Mursinna, R. S., Lee, K. W., Briggs, J. M. and Martinis, S. A. (2004) Molecular dissection of a critical specificity determinant within the amino acid editing domain of leucyl-tRNA synthetase. Biochemistry 43, 155-165
    • (2004) Biochemistry , vol.43 , pp. 155-165
    • Mursinna, R.S.1    Lee, K.W.2    Briggs, J.M.3    Martinis, S.A.4
  • 24
    • 14344250347 scopus 로고    scopus 로고
    • An aminoacyl-tRNA synthetase with a defunct editing site
    • Lue, S. W. and Kelley, S. O. (2005) An aminoacyl-tRNA synthetase with a defunct editing site. Biochemistry 44, 3010-3016
    • (2005) Biochemistry , vol.44 , pp. 3010-3016
    • Lue, S.W.1    Kelley, S.O.2
  • 25
    • 17844370313 scopus 로고    scopus 로고
    • Leucyl-tRNA synthetase from the ancestral bacterium Aquitex aeolicus contains relics of synthetase evolution
    • Zhao, M. W., Zhu, B., Hao, R., Xu, M. G., Eriani, G. and Wang, E. D. (2005) Leucyl-tRNA synthetase from the ancestral bacterium Aquitex aeolicus contains relics of synthetase evolution. EMBO J. 24, 1430-1439
    • (2005) EMBO J. , vol.24 , pp. 1430-1439
    • Zhao, M.W.1    Zhu, B.2    Hao, R.3    Xu, M.G.4    Eriani, G.5    Wang, E.D.6
  • 26
    • 0037183493 scopus 로고    scopus 로고
    • Leu isoacceptors by the mutants of Escherichia coli leucyl-tRNA synthetase in editing
    • Leu isoacceptors by the mutants of Escherichia coli leucyl-tRNA synthetase in editing. Biochemistry 41, 10623-10628
    • (2002) Biochemistry , vol.41 , pp. 10623-10628
    • Du, X.1    Wang, E.D.2
  • 27
    • 0035814794 scopus 로고    scopus 로고
    • Effect of alanine-293 replacement on the activity, ATP binding, and editing of Escherichia coli leucyl-tRNA synthetase
    • Chen, J. F., Li, T., Wang, E. D. and Wang, Y. L. (2001) Effect of alanine-293 replacement on the activity, ATP binding, and editing of Escherichia coli leucyl-tRNA synthetase. Biochemistry 40, 1144-1149
    • (2001) Biochemistry , vol.40 , pp. 1144-1149
    • Chen, J.F.1    Li, T.2    Wang, E.D.3    Wang, Y.L.4
  • 28
    • 1542349267 scopus 로고    scopus 로고
    • Crystal structures of the CP1 domain from Thermus thermophilus isoleucyl-tRNA synthetase and its complex with L-Val
    • Fukunaga, R., Fukai, S., Ishitani, R., Nureki, O. and Yokoyama, S. (2004) Crystal structures of the CP1 domain from Thermus thermophilus isoleucyl-tRNA synthetase and its complex with L-Val. J. Biol. Chem. 279, 8396-8402
    • (2004) J. Biol. Chem. , vol.279 , pp. 8396-8402
    • Fukunaga, R.1    Fukai, S.2    Ishitani, R.3    Nureki, O.4    Yokoyama, S.5
  • 29
    • 0034682566 scopus 로고    scopus 로고
    • Errors from selective disruption of the editing center in a tRNA synthetase
    • Hendrickson, T. L., Nomanbhoy, T. K. and Schimmel, P. (2000) Errors from selective disruption of the editing center in a tRNA synthetase. Biochemistry 39, 8180-8186
    • (2000) Biochemistry , vol.39 , pp. 8180-8186
    • Hendrickson, T.L.1    Nomanbhoy, T.K.2    Schimmel, P.3
  • 30
    • 0037154266 scopus 로고    scopus 로고
    • Blocking site-to-site translocation of a misactivated amino acid by mutation of a class I tRNA synthetase
    • Bishop, A. C., Nomanbhoy, T. K. and Schimmel, P. (2002) Blocking site-to-site translocation of a misactivated amino acid by mutation of a class I tRNA synthetase. Proc. Natl. Acad. Sci. U.S.A. 99, 585-590
    • (2002) Proc. Natl. Acad. Sci. U.S.A. , vol.99 , pp. 585-590
    • Bishop, A.C.1    Nomanbhoy, T.K.2    Schimmel, P.3
  • 31
    • 1942471991 scopus 로고    scopus 로고
    • Groups on the side chain of T252 in Escherichia coli leucyl-tRNA synthetase are important for discrimination of amino acids and cell viability
    • Xu, M. G., Li, J., Du, X. and Wang, E. D. (2004) Groups on the side chain of T252 in Escherichia coli leucyl-tRNA synthetase are important for discrimination of amino acids and cell viability. Biochem. Biophys. Res. Commun. 318, 11-16
    • (2004) Biochem. Biophys. Res. Commun. , vol.318 , pp. 11-16
    • Xu, M.G.1    Li, J.2    Du, X.3    Wang, E.D.4
  • 32
    • 0037178055 scopus 로고    scopus 로고
    • Rational design to block amino acid editing of a tRNA synthetase
    • Mursinna, R. S. and Martinis, S. A. (2002) Rational design to block amino acid editing of a tRNA synthetase. J. Am. Chem. Soc. 124, 7286-7287
    • (2002) J. Am. Chem. Soc. , vol.124 , pp. 7286-7287
    • Mursinna, R.S.1    Martinis, S.A.2
  • 33
    • 0037183472 scopus 로고    scopus 로고
    • Attenuation of the editing activity of the Escherichia coli leucyl-tRNA synthetase allows incorporation of novel amino acids into proteins in vivo
    • Tang, Y. and Tirrell, D. A. (2002) Attenuation of the editing activity of the Escherichia coli leucyl-tRNA synthetase allows incorporation of novel amino acids into proteins in vivo. Biochemistry 41, 10635-10645
    • (2002) Biochemistry , vol.41 , pp. 10635-10645
    • Tang, Y.1    Tirrell, D.A.2
  • 34
    • 0032961270 scopus 로고    scopus 로고
    • ESPript: Analysis of multiple sequence alignments in PostScript
    • Gouet, P., Courcelle, E., Stuart, D. I. and Metoz, F. (1999) ESPript: analysis of multiple sequence alignments in PostScript. Bioinformatics 15, 305-308
    • (1999) Bioinformatics , vol.15 , pp. 305-308
    • Gouet, P.1    Courcelle, E.2    Stuart, D.I.3    Metoz, F.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.