Crystal structures that suggest late development of genetic code components for differentiating aromatic side chains

Proceedings of the National Academy of Sciences of the United States of America

Volumn 100, Issue 26, 2003, Pages 15376-15380

  Yang, Xiang Lei ^a   Otero, Francella J ^a   Skene, Robert J ^b   McRee, Duncan E ^b   Schimmel, Paul ^a   De Pouplana, Lluís Ribas ^a,c  

^a SCRIPPS RESEARCH INSTITUTE   (United States)

^b Takeda San Diego Inc   (United States)

^c INSTITUCIÓ CATALANA DE RECERCA I ESTUDIS AVANÇATS ICREA   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID TRANSFER RNA LIGASE; AROMATIC COMPOUND; PHENYLALANINE; TRYPTOPHAN; TRYPTOPHAN DERIVATIVE; TRYPTOPHAN TRANSFER RNA LIGASE; TYROSINE; TYROSINE TRANSFER RNA LIGASE;

AMINO ACID ANALYSIS; ARTICLE; CRYSTAL STRUCTURE; ENZYME ACTIVE SITE; GENETIC CODE; PHYLOGENY; PRIORITY JOURNAL;

ADENOSINE MONOPHOSPHATE; AMINO ACID SEQUENCE; BACILLUS STEAROTHERMOPHILUS; BINDING SITES; CONSERVED SEQUENCE; CRYSTALLOGRAPHY, X-RAY; GENETIC CODE; HUMANS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PHYLOGENY; PROTEIN CONFORMATION; SENSITIVITY AND SPECIFICITY; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID; TRYPTOPHAN; TRYPTOPHAN-TRNA LIGASE;

EID: 0346103681     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.2136794100     Document Type: Article

References (27)

1. Ibba, M., Morgan, S., Curnow, A. W., Pridmore, D. R., Vothknecht, U. C., Gardner, W., Lin, W., Woese, C. R. & Söll, D. (1997) Science 278, 1119-1122.
2. Carter, C. W., Jr. (1993) Annu. Rev. Biochem. 62, 715-748.
3. Cavarelli, J. & Moras, D. (1993) FASEB J. 7, 79-86.
4. Cusack, S. (1997) Curr. Opin. Struct. Biol. 7, 881-889.
5. Ribas de Pouplana, L. & Schimmel, P. (2001) Cell 104, 191-193.
6. Doring, V., Mootz, H. D., Nangle, L. A., Hendrickson, T. L., de Crecy-Lagard, V., Schimmel, P. & Marliere, P. (2001) Science 292, 501-504.
7. Nagel, G. M. & Doolittle, R. F. (1991) Proc. Natl. Acad. Sci. USA 88, 8121-8125.
8. Nagel, G. M. & Doolittle, R. F. (1995) J. Mol. Evol. 40, 487-498.
9. Brick, P., Bhat, T. N. & Blow, D. M. (1988) J. Mol. Biol. 208, 83-98.
10. Doublie, S., Bricogne, G., Gilmore, C. & Carter, C. W., Jr. (1995) Structure 3, 17-31.
11. Qiu, X., Janson, C. A., Smith, W. W., Green, S. M., McDevitt, P., Johanson, K., Carter, P., Hibbs, M., Lewis, C., Chalker, A., et al. (2001) Protein Sci. 10, 2008-2016.
12. Yaremchuk, A., Kriklivyi, I., Tukalo, M. & Cusack, S. (2002) EMBO J. 21, 3829-3840.
13. Kobayashi, T., Nureki, O., Ishitani, R., Yaremchuk, A., Tukalo, M., Cusack, S., Sakamoto, K. & Yokoyama, S. (2003) Nat. Struct. Biol. 10, 425-432.
14. Yang, X.-L., Skene, R. J., McRee, D. E. & Schimmel, P. (2002) Proc. Natl. Acad. Sci. USA 99, 15369-15374.
15. Wakasugi, K., Slike, B. M., Hood, J., Otani, A., Ewalt, K. L., Friedlander, M., Cheresh, D. A. & Schimmel, P. (2002) Proc. Natl. Acad. Sci. USA 99, 173-177.
16. Hendrickson, W. A., Horton, J. R. & LeMaster, D. M. (1990) EMBO J. 9, 1665-1672.
17. Otwinowski, Z. & Minor, W. (1997) in Methods in Enzymology, eds. Carter, C. W., Jr., & Sweet, R. W. (Academic, San Diego), Vol. 276, pp. 307-326.
18. Terwilliger, T. C. & Berendzen, J. (1999) Acta Crystallogr. D 55, 849-861.
19. Terwilliger, T. C. (2000) Acta Crystallogr. D 56, 965-972.
20. Perrakis, A., Morris, R. M. & Lamzin, V. S. (1999) Nat. Struct. Biol. 6, 458-463.
21. Jones, T. A., Zou, J. Y., Cowan, S. W. & Kjeldgaard, M. (1991) Acta Crystallogr. A 47, 110-119.
22. Adams, P. D., Rice, L. M. & Brunger, A. T. (1998) Curr. Opin. Struct. Biol. 8, 606-611.
23. Szymanski, M. & Barciszewski, J. (2000) Nucleic Acids Res. 28, 326-328.
24. Ribas de Pouplana, L., Brown, J. R. & Schimmel, P. (2001) J. Mol. Evol. 53, 261-268.
25. Felsenstein, J. (1988) Annu. Rev. Genet. 22, 521-565.
26. Brown, J. R., Robb, F. T., Weiss, R. & Doolittle, W. F. (1997) J. Mol. Evol. 45, 9-16.
27. Ribas de Pouplana, L., Frugier, M., Quinn, C. L. & Schimmel, P. (1996) Proc. Natl. Acad. Sci. USA 93, 166-170.