Long-range intramolecular signaling in a tRNA synthetase complex revealed by pre-steady-state kinetics

Proceedings of the National Academy of Sciences of the United States of America

Volumn 101, Issue 40, 2004, Pages 14396-14401

  Uter, Nathan T ^a   Perona, John J ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID TRANSFER RNA LIGASE; AMINOACYL TRANSFER RNA; GLUTAMINE; TRANSFER RNA;

AMINOACYLATION; ANTICODON; ARTICLE; BINDING AFFINITY; CATALYSIS; CONCENTRATION RESPONSE; GENE MUTATION; KINETICS; PRIORITY JOURNAL; PROTEIN FOLDING; RNA BINDING; RNA STRUCTURE; RNA SYNTHESIS; SIGNAL TRANSDUCTION; STEADY STATE; X RAY CRYSTALLOGRAPHY;

AMINO ACYL-TRNA SYNTHETASES; ANTICODON; CATALYTIC DOMAIN; ESCHERICHIA COLI; GLUTAMINE; KINETICS; MACROMOLECULAR SUBSTANCES; MODELS, MOLECULAR; MUTAGENESIS, SITE-DIRECTED; RECOMBINANT PROTEINS; RNA, BACTERIAL; RNA, TRANSFER, AMINO ACYL; RNA, TRANSFER, GLN; SIGNAL TRANSDUCTION;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI;

EID: 5144223811     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0404017101     Document Type: Article

References (45)

1. Williamson, J. R. (2000) Nat. Struct. Biol. 7, 834-837.
2. Leulliot, N. & Varani, G. (2001) Biochemistry 40, 7947-7956.
3. Post, C. B. & Ray, W. J., Jr. (1995) Biochemistry 34, 15881-15885.
4. Ibba, M. & Soil, D. (2000) Annu. Rev. Biochem. 69, 617-650.
5. Francklyn, C., Perona, J. J., Puetz, J. & Hou, Y.-M. (2002) RNA 8, 1363-1372.
6. Ibba, M, Becker, H. D., Stathopoulos, C., Tumbula, D. L. & Söll, D. (2000) Trends Biochem. Sci. 25, 311-316.
7. Bhattacharyya, T. & Roy, S. (1993) Biochemistry 32, 9268-9273.
8. Mandai, A. K., Bhattacharyya, A., Bhattacharyya, S., Bhattacharyya, T. & Roy, S. (1998) Protein Sci. 7, 1046-1051.
9. Sherlin, L. D. & Perona, J. J. (2003) Structure (London) 11, 591-603.
10. Rould, M. A., Perona, J. J., Söll, D. & Steitz, T. A. (1989) Science 246, 1135-1141.
11. Rath, V. L., Sylvian, L. F., Beijer, B., Sproat, B. S. & Steitz, T. A. (1998) Structure (London) 6, 439-448.
12. Bullock, T. L., Uter, N. T., Nissan, T. A. & Perona, J. J. (2003) J. Mol. Biol. 328, 395-408.
13. Jahn, M., Rogers, J. M. & Soil, D. (1991) Nature 352, 258-260.
14. Ibba, M., Hong, K., Sherman, J. M., Sever, S. & Söll, D. (1996) Proc. Natl. Acad. Sci. USA 93, 6953-6958.
15. McClain, W. H., Schneider, J., Bhattacharya, S. & Gabriel, K. (1998) Proc. Natl. Acad. Sci. USA 95, 460-465.
16. Rogers, M. J., Adachi, T., Inokuchi, H. & Soil, D. (1994) Proc. Natl. Acad. Sci. USA 91, 291-295.
17. Weygand-Durasevic, I., Rogers, M. J. & Söll, D. (1994) J. Mol. Biol. 240, 111-118.
18. Wolfson, A. D., Pleiss, J. A. & Uhlenbeck, O. C. (2002) Proc. Natl. Acad. Sci. USA 99, 5965-5970.
19. Grodberg, J. & Dunn, J. J. (1988) J. Bacteriol. 170, 1245-1258.
20. Winder, S. J. & Kendrick-Jones, J. (1995) Anal. Biochem. 231, 271-273.
21. Bullock, T. L., Sherlin, L. D. & Perona, J. J. (2000) Nat. Struct. Biol. 7, 497-504.
22. Sherlin, L. D., Bullock, T. L., Nissan, T. A., Perona, J. J., LaRiviere, F. J., Uhlenbeck, O. C. & Scaringe, S. A. (2001) RNA 7, 1671-1678.
23. Nissan, T. A. & Perona, J. J. (2000) RNA 6, 1585-1596.
24. Hong, K.-W., Ibba, M., Weygand-Durasevic, I., Rogers, M. J., Thomann, H.-U. & Soll, D. (1996) EMBO J. 15, 1983-1991.
25. Johnson, K. A. (1991) in The Enzymes, ed. Sigman, D. S. (Academic, San Diego), 3rd Ed., Vol. 20, pp. 1-61.
26. Avis, J. M., Day, G. A., Garcia, G. A. & Fersht, A. R. (1993) Biochemistry 32, 5312-5320.
27. Beebe, J. A. & Fierke, C. A. (1994) Biochemistry 33, 10294-10304.
28. Rould, M. A., Perona, J. J. & Steitz, T. A. (1991) Nature 352, 213-218.
29. Loftfield, R. B. (1972) Prog. Nucleic Acids Res. Mol. Biol. 12, 87-128.
30. Wells, T. C. & Fersht, A. R. (1986) Biochemistry 25, 1881-1886.
31. Fersht, A. R., Knill-Jones, J. W., Bedouelle, H. & Winter, G. (1988) Biochemistry 27, 1581-1587.
32. Pope, A. J., Lapointe, J., Mensah, L., Benson, N., Brown, M. J. B. & Moore, K. J. (1998) J. Biol. Chem. 273, 31680-31690.
33. Merle, M., Trezeguet, V., Graves, P. V., Andrews, D., Muench, K. H. & Labouesse, B. (1986) Biochemistry 25, 1115-1123.
34. Bovee, M. L., Pierce, M. A. & Francklyn, C. S. (2003) Biochemistry 42, 15102-15113.
35. Mulvey, R. S. & Fersht, A. R. (1978) Biochemistry 17, 5591-5597.
36. Lin, S. X., Baltzinger, M. & Remy, P. (1984) Biochemistry 23, 4109-4116.
37. Trezeguet, V., Merle, M., Gandar, J.-C. & Labouesse, B. (1986) Biochemistry 25, 7125-7136.
38. Fersht, A. R. & Jakes, R. (1975) Biochemistry 14, 3350-3356.
39. Fersht, A. R., Gangloff, J. & Dirheimer, G. (1978) Biochemistry 17, 3740-3746.
40. Avis, J. M. & Fersht, A. R. (1993) Biochemistry 32, 5321-5326.
41. Xin, Y., Li, W., Dwyer, D. S. & First, A. R. (2000) J. Mol. Biol. 303, 287-298.
42. Ibba, M., Sever, S., Praetorius-Ibba, M. & Söll, D. (1999) Nucleic Acids Res. 27, 3631-3637.
43. Fersht, A. R. (1999) Structure and Mechanism in Protein Science (Freeman, New York).
44. Wright, D. J., Martinis, S. A., Jahn, M., Soll, D. & Schimmel, P. (1993) Biochimie 75, 1041-1049.
45. Sherman, J. M., Thomann, H.-U. & Soll, D. (1996) J. Mol. Biol. 256, 818-828.