-
1
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
Brunger, A.T., Adams, P.D., Clore, G.M., DeLano, W.L., Gros, P., Grosse-Kunstleve, R.W., Jiang, J.S., Kuszewski, J., Nilges, M., Pannu, N.S., et al. 1998. Crystallography & NMR system: A new software suite for macromolecular structure determination. Acta Crystallogr. 54: 905-921.
-
(1998)
Acta Crystallogr.
, vol.54
, pp. 905-921
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
-
2
-
-
0032530309
-
L-arginine recognition by yeast arginyl-tRNA synthetase
-
Cavarelli, J., Delagoutte, B., Eriani, G., Gangloff, J., and Moras, D. 1998. L-arginine recognition by yeast arginyl-tRNA synthetase. EMBO J. 17: 5438-5448.
-
(1998)
EMBO J.
, vol.17
, pp. 5438-5448
-
-
Cavarelli, J.1
Delagoutte, B.2
Eriani, G.3
Gangloff, J.4
Moras, D.5
-
3
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
Collaborative Computational Project No. 4. 1994. The CCP4 suite: Programs for protein crystallography. Acta Crystallogr. D50: 760-763.
-
(1994)
Acta Crystallogr.
, vol.D50
, pp. 760-763
-
-
-
4
-
-
0034612210
-
CP1 domain in Escherichia coli leucyl-tRNA synthetase is crucial for its editing function
-
Chen, J.F., Guo, N.N., Li, T., Wang, E.D., and Wang, Y.L. 2000. CP1 domain in Escherichia coli leucyl-tRNA synthetase is crucial for its editing function. Biochemistry 39: 6726-6731.
-
(2000)
Biochemistry
, vol.39
, pp. 6726-6731
-
-
Chen, J.F.1
Guo, N.N.2
Li, T.3
Wang, E.D.4
Wang, Y.L.5
-
5
-
-
0025804403
-
Recognition of Escherichia coli valine transfer RNA by its cognate synthetase: A fluorine-19 NMR study
-
Chu, W.C. and Horowitz, J. 1991. Recognition of Escherichia coli valine transfer RNA by its cognate synthetase: A fluorine-19 NMR study. Biochemistry 30: 1655-1663.
-
(1991)
Biochemistry
, vol.30
, pp. 1655-1663
-
-
Chu, W.C.1
Horowitz, J.2
-
6
-
-
0026468016
-
Fluorine-19 nuclear magnetic resonance as a probe of the solution structure of mutants of 5-fluorouracil-substituted Escherichia coli valine tRNA
-
Chu, W.C., Feiz, V., Derrick, W.B., and Horowitz, J. 1992. Fluorine-19 nuclear magnetic resonance as a probe of the solution structure of mutants of 5-fluorouracil-substituted Escherichia coli valine tRNA. J. Mol. Biol. 227: 1164-1172.
-
(1992)
J. Mol. Biol.
, vol.227
, pp. 1164-1172
-
-
Chu, W.C.1
Feiz, V.2
Derrick, W.B.3
Horowitz, J.4
-
7
-
-
0029099218
-
Eleven down and nine to go
-
Cusack, S. 1995. Eleven down and nine to go. Nat. Struct. Biol. 2: 824-831.
-
(1995)
Nat. Struct. Biol.
, vol.2
, pp. 824-831
-
-
Cusack, S.1
-
8
-
-
0034657687
-
The 2 Å crystal structure of leucyl-tRNA synthetase and its complex with a leucyladenylate analogue
-
Cusack, S., Yaremchuk, A., and Tukalo, M. 2000. The 2 Å crystal structure of leucyl-tRNA synthetase and its complex with a leucyladenylate analogue. EMBO J. 19: 2351-2361.
-
(2000)
EMBO J.
, vol.19
, pp. 2351-2361
-
-
Cusack, S.1
Yaremchuk, A.2
Tukalo, M.3
-
9
-
-
0034332436
-
tRNA aminoacylation by arginyl-tRNA synthetase: Induced conformations during substrates binding
-
Delagoutte, B., Moras, D., and Cavarelli, J. 2000. tRNA aminoacylation by arginyl-tRNA synthetase: Induced conformations during substrates binding. EMBO J. 19: 5599-5610.
-
(2000)
EMBO J.
, vol.19
, pp. 5599-5610
-
-
Delagoutte, B.1
Moras, D.2
Cavarelli, J.3
-
10
-
-
0027674975
-
The aminoacyl-tRNA synthetase family: Modules at work
-
Delarue, M. and Moras, D. 1993. The aminoacyl-tRNA synthetase family: Modules at work. Bioessays 15: 675-687.
-
(1993)
Bioessays
, vol.15
, pp. 675-687
-
-
Delarue, M.1
Moras, D.2
-
11
-
-
0027370662
-
Probing structural differences between native and in vitro transcribed Escherichia coli valine transfer RNA: Evidence for stable base modification-dependent conformers
-
Derrick, W. B. and Horrowitz, J. 1993. Probing structural differences between native and in vitro transcribed Escherichia coli valine transfer RNA: Evidence for stable base modification-dependent conformers. Nucleic Acids Res. BO21: 948-53.
-
(1993)
Nucleic Acids Res.
, vol.BO21
, pp. 948-953
-
-
Derrick, W.B.1
Horrowitz, J.2
-
12
-
-
0025158208
-
Partition of tRNA synthetases into two classes based on mutually exclusive sets of sequence motifs
-
Eriani, G., Delarue, M., Poch, O., Gangloff, J., Moras, D. 1990. Partition of tRNA synthetases into two classes based on mutually exclusive sets of sequence motifs. Nature 347: 203-206.
-
(1990)
Nature
, vol.347
, pp. 203-206
-
-
Eriani, G.1
Delarue, M.2
Poch, O.3
Gangloff, J.4
Moras, D.5
-
13
-
-
0017230165
-
Mechanism of aminoacylation of tRNA. Proof of the aminoacyl adenylate pathway for the isoleucyl- and tyrosyl-tRNA synthetases from Escherichia coli K12
-
Fersht, A.R. and Kaethner, M.M. 1976. Mechanism of aminoacylation of tRNA. Proof of the aminoacyl adenylate pathway for the isoleucyl- and tyrosyl-tRNA synthetases from Escherichia coli K12. Biochemistry 15: 818-823.
-
(1976)
Biochemistry
, vol.15
, pp. 818-823
-
-
Fersht, A.R.1
Kaethner, M.M.2
-
15
-
-
3643114575
-
Universal rules and idiosyncratic features in tRNA identity
-
Giegè, R., Sissler, M., and Florentz, C. 1998. Universal rules and idiosyncratic features in tRNA identity. Nucleic Acids Res. 26: 5017-5035.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 5017-5035
-
-
Giegè, R.1
Sissler, M.2
Florentz, C.3
-
16
-
-
0033564663
-
Synthetase recognition determinants of E. coli valine transfer RNA
-
Horowitz, J., Chu, W.C., Derrick, W.B., Liu, J.C., Liu, M., and Yue, D. 1999. Synthetase recognition determinants of E. coli valine transfer RNA. Biochemistry 38: 7737-7746.
-
(1999)
Biochemistry
, vol.38
, pp. 7737-7746
-
-
Horowitz, J.1
Chu, W.C.2
Derrick, W.B.3
Liu, J.C.4
Liu, M.5
Yue, D.6
-
17
-
-
84889120137
-
Improved methods for binding protein models in electron density maps and the location of errors in these models
-
Jones, T.A., Zou, J.Y., Cowan, S.W., and Kjeldgaard, M. 1991. Improved methods for binding protein models in electron density maps and the location of errors in these models. Acta Crystallogr. A47: 110-119.
-
(1991)
Acta Crystallogr.
, vol.A47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
18
-
-
0035210865
-
Shifted positioning of the anticodon nucleotide residues of amber suppressor tRNA species by Escherichia coli arginyl-tRNA synthetase
-
Kiga, D., Sakamoto, K., Sato, S., Hirao, I., and Yokoyama, S. 2001. Shifted positioning of the anticodon nucleotide residues of amber suppressor tRNA species by Escherichia coli arginyl-tRNA synthetase. Eur. J. Biochem. 268: 6207-6213.
-
(2001)
Eur. J. Biochem.
, vol.268
, pp. 6207-6213
-
-
Kiga, D.1
Sakamoto, K.2
Sato, S.3
Hirao, I.4
Yokoyama, S.5
-
19
-
-
0029365773
-
Cell-free synthesis and amino acid-selective stable isotope labeling of proteins for NMR analysis
-
Kigawa, T., Muto, Y., and Yokoyama, S. 1995. Cell-free synthesis and amino acid-selective stable isotope labeling of proteins for NMR analysis. J. Biomol. NMR 6:129-134.
-
(1995)
J. Biomol. NMR
, vol.6
, pp. 129-134
-
-
Kigawa, T.1
Muto, Y.2
Yokoyama, S.3
-
20
-
-
0029881007
-
MOLMOL: A program for display and analysis of macromolecular structures
-
Koradi, R., Billeter, M., and Wüthrich, K. 1996. MOLMOL: A program for display and analysis of macromolecular structures. J. Mol. Graph. 14: 51-55.
-
(1996)
J. Mol. Graph.
, vol.14
, pp. 51-55
-
-
Koradi, R.1
Billeter, M.2
Wüthrich, K.3
-
21
-
-
0026244229
-
MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
-
Kraulis, P.J. 1991. MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures. J. Appl. Crystallog. 24: 946-950.
-
(1991)
J. Appl. Crystallog.
, vol.24
, pp. 946-950
-
-
Kraulis, P.J.1
-
22
-
-
0029854940
-
Aminoacylation error correction
-
Lin, L., Hale, S.P., and Schimmel, P. 1996. Aminoacylation error correction. Nature 384: 33-34.
-
(1996)
Nature
, vol.384
, pp. 33-34
-
-
Lin, L.1
Hale, S.P.2
Schimmel, P.3
-
23
-
-
0024300362
-
Changing the acceptor identity of a transfer RNA by altering nucleotides in a "variable pocket"
-
McClain, W.H. and Foss, K. 1988. Changing the acceptor identity of a transfer RNA by altering nucleotides in a "variable pocket". Science 241: 1804-1807.
-
(1988)
Science
, vol.241
, pp. 1804-1807
-
-
McClain, W.H.1
Foss, K.2
-
24
-
-
0033579427
-
Crystal structure of Escherichia coli methionyl-tRNA synthetase highlights species-specific features
-
Mechulam, Y., Schmitt, E., Maveyraud, L., Zelwer, C., Nureki, O., Yokoyama, S., Konno, M., and Blanquet, S. 1999. Crystal structure of Escherichia coli methionyl-tRNA synthetase highlights species-specific features. J. Mol. Biol. 294: 1287-1297.
-
(1999)
J. Mol. Biol.
, vol.294
, pp. 1287-1297
-
-
Mechulam, Y.1
Schmitt, E.2
Maveyraud, L.3
Zelwer, C.4
Nureki, O.5
Yokoyama, S.6
Konno, M.7
Blanquet, S.8
-
25
-
-
0030815133
-
Raster3D: Photorealistic molecular graphics
-
Merritt, E.A. and Bacon, D.J. 1997. Raster3D: Photorealistic molecular graphics. Methods Enzymol. 277: 505-524.
-
(1997)
Methods Enzymol.
, vol.277
, pp. 505-524
-
-
Merritt, E.A.1
Bacon, D.J.2
-
26
-
-
0023734317
-
Codon and amino-acid specificities of a transfer RNA are both converted by a single post-transcriptional modification
-
Muramatsu, T., Nishikawa, K., Nemoto, F., Kuchino, Y., Nishimura, S., Miyazawa, T., and Yokoyama, S. 1988. Codon and amino-acid specificities of a transfer RNA are both converted by a single post-transcriptional modification. Nature 336: 179-181.
-
(1988)
Nature
, vol.336
, pp. 179-181
-
-
Muramatsu, T.1
Nishikawa, K.2
Nemoto, F.3
Kuchino, Y.4
Nishimura, S.5
Miyazawa, T.6
Yokoyama, S.7
-
28
-
-
84920325457
-
AMoRe: An automated package for molecular replacement
-
Navaza, J. 1994. AMoRe: An automated package for molecular replacement. Acta Crystallogr. A50: 157-163.
-
(1994)
Acta Crystallogr.
, vol.A50
, pp. 157-163
-
-
Navaza, J.1
-
29
-
-
0037013921
-
Structural origins of amino acid selection without editing by cysteinyl-tRNA synthetase
-
Newberry, K. J., Hou, Y.-M., and Perona, J. 2002. Structural origins of amino acid selection without editing by cysteinyl-tRNA synthetase. EMBO J. 21: 2778-2787.
-
(2002)
EMBO J.
, vol.21
, pp. 2778-2787
-
-
Newberry, K.J.1
Hou, Y.-M.2
Perona, J.3
-
30
-
-
0026319199
-
Protein folding and association: Insights from the interfacial and thermodynamic properties of hydrocarbons
-
Nicholls, A., Sharp, K.A., and Honig, B. 1991. Protein folding and association: Insights from the interfacial and thermodynamic properties of hydrocarbons. Proteins 11: 281-296.
-
(1991)
Proteins
, vol.11
, pp. 281-296
-
-
Nicholls, A.1
Sharp, K.A.2
Honig, B.3
-
31
-
-
0028266202
-
Molecular recognition of the identity-determinant set of isoleucine transfer RNA from Escherichia coli
-
Nureki, O., Niimi, T., Muramatsu, T., Kanno, H., Kohno, T., Florentz, C., Giegé, R., and Yokoyama, S. 1994. Molecular recognition of the identity-determinant set of isoleucine transfer RNA from Escherichia coli. J. Mol. Biol. 236: 710-724.
-
(1994)
J. Mol. Biol.
, vol.236
, pp. 710-724
-
-
Nureki, O.1
Niimi, T.2
Muramatsu, T.3
Kanno, H.4
Kohno, T.5
Florentz, C.6
Giegé, R.7
Yokoyama, S.8
-
32
-
-
0032562571
-
Enzyme structure with two catalytic sites for double-sieve selection of substrate
-
Nureki, O., Vassylyev, D.G., Tateno, M., Shimada, A., Nakama, T., Fukai, S., Konno, M., Hendrickson, T.L., Schimmel, P., and Yokoyama, S. 1998. Enzyme structure with two catalytic sites for double-sieve selection of substrate. Science 280: 578-582.
-
(1998)
Science
, vol.280
, pp. 578-582
-
-
Nureki, O.1
Vassylyev, D.G.2
Tateno, M.3
Shimada, A.4
Nakama, T.5
Fukai, S.6
Konno, M.7
Hendrickson, T.L.8
Schimmel, P.9
Yokoyama, S.10
-
33
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski, Z. and Minor, W. 1997. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276: 307-326.
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
34
-
-
0025735619
-
Anticodon-dependent aminoacylation of a noncognate tRNA with isoleucine, valine, and phenylalanine in vivo
-
Pallanck, L. and Schulman, L.H. 1991. Anticodon-dependent aminoacylation of a noncognate tRNA with isoleucine, valine, and phenylalanine in vivo. Proc. Natl. Acad. Sci. 88: 3872-3876.
-
(1991)
Proc. Natl. Acad. Sci.
, vol.88
, pp. 3872-3876
-
-
Pallanck, L.1
Schulman, L.H.2
-
36
-
-
0025744320
-
Structural basis of anticodon loop recognition by glutaminyl-tRNA synthetase
-
Rould, M.A., Perona, J.J., and Steitz, T.A. 1991. Structural basis of anticodon loop recognition by glutaminyl-tRNA synthetase. Nature 352: 213-218.
-
(1991)
Nature
, vol.352
, pp. 213-218
-
-
Rould, M.A.1
Perona, J.J.2
Steitz, T.A.3
-
37
-
-
0017658685
-
Structural requirements for aminoacylation of Escherichia coli formylmethionine transfer RNA
-
Schulman, L.H. and Pelka, H. 1977. Structural requirements for aminoacylation of Escherichia coli formylmethionine transfer RNA. Biochemistry 16: 4256-4265.
-
(1977)
Biochemistry
, vol.16
, pp. 4256-4265
-
-
Schulman, L.H.1
Pelka, H.2
-
38
-
-
0035119935
-
Structural basis for anticodon recognition by discriminating glutamyl- tRNA synthetase
-
Sekine, S., Nureki, O., Shimada, A., Vassylyev, D.G., and Yokoyama, S. 2001. Structural basis for anticodon recognition by discriminating glutamyl- tRNA synthetase. Nat. Struct. Biol. 8: 203-206.
-
(2001)
Nat. Struct. Biol.
, vol.8
, pp. 203-206
-
-
Sekine, S.1
Nureki, O.2
Shimada, A.3
Vassylyev, D.G.4
Yokoyama, S.5
-
39
-
-
0013200222
-
Structural and mutational studies of the recognition of the arginine tRNA-specific major identity element, A20, by arginyl-tRNA synthetase
-
Shimada, A., Nureki, O., Goto, M., Takahashi, S., and Yokoyama, S. 2001. Structural and mutational studies of the recognition of the arginine tRNA-specific major identity element, A20, by arginyl-tRNA synthetase. Proc. Natl. Acad. Sci. 6: 6.
-
(2001)
Proc. Natl. Acad. Sci.
, vol.6
, pp. 6
-
-
Shimada, A.1
Nureki, O.2
Goto, M.3
Takahashi, S.4
Yokoyama, S.5
-
41
-
-
0031804156
-
Compilation of tRNA sequences and sequences of tRNA genes
-
Sprinzl, M., Horn, C., Brown, M., Ioudovitch, A., and Steinberg, S. 1998 Compilation of tRNA sequences and sequences of tRNA genes. Nucleic Acids Res. 26: 148-153.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 148-153
-
-
Sprinzl, M.1
Horn, C.2
Brown, M.3
Ioudovitch, A.4
Steinberg, S.5
-
42
-
-
0034651315
-
The 2.0 Å crystal structure of Thermus thermophilus methionyl-tRNA synthetase reveals two RNA-binding modules
-
Sugiura, I., Nureki, O., Ugaji-Yoshikawa, Y., Kuwabara, S., Shimada, A., Tateno, M., Lorber, B., Giegè, R., Moras, D., Yokoyama, S., et al. 2000. The 2.0 Å crystal structure of Thermus thermophilus methionyl-tRNA synthetase reveals two RNA-binding modules. Structure Fold. Des. 8: 197-208.
-
(2000)
Structure Fold. Des.
, vol.8
, pp. 197-208
-
-
Sugiura, I.1
Nureki, O.2
Ugaji-Yoshikawa, Y.3
Kuwabara, S.4
Shimada, A.5
Tateno, M.6
Lorber, B.7
Giegè, R.8
Moras, D.9
Yokoyama, S.10
-
43
-
-
0017194883
-
Three-dimensional structure of a transfer RNA in two crystal forms
-
Sussman, J.L. and Kim, S. 1976 Three-dimensional structure of a transfer RNA in two crystal forms. Science 192: 853-858.
-
(1976)
Science
, vol.192
, pp. 853-858
-
-
Sussman, J.L.1
Kim, S.2
-
44
-
-
0025816943
-
Identity determinants of E. coli tRNA(Val)
-
Tamura, K., Himeno, H., Asahara, H., Hasegawa, T., and Shimizu, M. 1991. Identity determinants of E. coli tRNA(Val). Biochem. Biophys. Res. Comm. 177: 619-623.
-
(1991)
Biochem. Biophys. Res. Comm.
, vol.177
, pp. 619-623
-
-
Tamura, K.1
Himeno, H.2
Asahara, H.3
Hasegawa, T.4
Shimizu, M.5
|