tRNA-dependent aminoacyl-adenylate hydrolysis by a nonediting class I aminoacyl-tRNA synthetase

Journal of Biological Chemistry

Volumn 280, Issue 25, 2005, Pages 23978-23986

  Gruic Sovulj, Ita ^a,b   Uter, Nathan ^a   Bullock, Timothy ^a   Perona, John J ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF ZAGREB   (Croatia)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; CHEMICAL ACTIVATION; COMPLEXATION; HYDROLYSIS; REACTION KINETICS; REDUCTION; RNA; SYNTHESIS (CHEMICAL);

AMINOACYLATION; NUCLEOTIDES; PEPTIDYL TRANSFER; RIBOSOMES;

ENZYME KINETICS;

ADENOSINE PHOSPHATE; ADENOSINE TRIPHOSPHATE; AMINO ACID TRANSFER RNA LIGASE; AMINOACYL TRANSFER RNA; GLUTAMINE; GLUTAMINE TRANSFER RNA LIGASE; HYDROGEN; ISOLEUCINE TRANSFER RNA LIGASE; NUCLEOTIDE; PEPTIDYLTRANSFERASE; TRANSFER RNA;

AMINOACYLATION; ARTICLE; CATALYSIS; HYDROLYSIS; PRIORITY JOURNAL; RIBOSOME; RNA TRANSLATION;

ADENOSINE MONOPHOSPHATE; AMINO ACYL-TRNA SYNTHETASES; BINDING SITES; CATALYSIS; HYDROLYSIS; MODELS, MOLECULAR; PROTEIN CONFORMATION; RNA EDITING; RNA, TRANSFER;

EID: 21244439199     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M414260200     Document Type: Article

References (54)

1. Ibba, M., and Söll, D. (2000) Annu. Rev. Biochem. 69, 617-650
2. Loftfield, R. B., and Vanderjagt, D. (1972) Biochem. J. 128, 1353-1356
3. LaRiviere, F. J., Wolfson, A. D., and Uhlenbeck, O. C. (2001) Science 294, 165-168
4. Hendrickson, T., and Schimmel, P. (2003) in Translation Mechanisms (Lapointe, J., and Brakier-Gingras, L., eds) pp. 34-64, Kluwer Academic/ Plenum Publishers, New York
5. Baldwin, A. N., and Berg, P. (1966) J. Biol. Chem. 241, 839-845
6. Eldred, E. W., and Schimmel, P. R. (1972) J. Biol. Chem. 247, 2961-2964
7. Fersht, A. R. (1977) Biochemistry 16, 1025-1030
8. Schmidt, E., and Schimmel, P. (1995) Biochemistry 34, 11204-11210
9. Schmidt, E., and Schimmel, P. (1994) Science 264, 265-267
10. Silvian, L. F., Wang, J., and Steitz, T. A. (1999) Science 285, 1074-1077
11. Fersht, A. R., and Kaethner, M. M. (1976) Biochemistry 15, 3342-3346
12. Fukai, S., Nureki, O., Sekine, S., Shimada, A., Tao, J., Vassylyev, D. G., and Yokoyama, S. (2000) Cell 103, 793-803
13. Chen, J. F., Guo, N. N., Li, T., Wang, E. D., and Wang, Y. L. (2000) Biochemistry 39, 6726-6731
14. Mursinna, R. S., Lincecum, T. L., Jr., and Martinis, S. A. (2001) Biochemistry 40, 5376-5381
15. Dock-Bregeon, A., Sankaranarayanan, R., Romby, P., Caillet, J., Springer, M., Rees, B., Francklyn, C. S., Ehresmann, C., and Moras, D. (2000) Cell 103, 877-884
16. Beuning, P. J., and Musier-Forsyth, K. (2000) Proc. Natl. Acad. Sci. U. S. A. 97, 8916-8920
17. Beebe, K., Ribas De Pouplana, L., Schimmel, P. (2003) EMBO J. 22, 668-675
18. Hendrickson, T. L., Nomanbhoy, T. K., de Crecy-Lagard, V., Fukai, S., Nureki, O., Yokoyama, S., and Schimmel, P. (2002) Mol. Cell 9, 353-362
19. Nomanbhoy, T. K., Hendrickson, T. L., and Schimmel, P. (1999) Mol. Cell 4, 519-528
20. Rath, V. L., Silvian, L. F., Beijer, B., Sproat, B. S., and Steitz, T. A. (1998) Structure 6, 439-449
21. Bullock, T. L., Uter, N., T., Nissan, T. A., and Perona, J. J. (2003) J. Mol. Biol. 328, 395-408
22. Perona J. J. (2004) in The Aminoacyl-tRNA Synthetases (Ibba, M., Francklyn, C., and Cusack, S., eds) pp. 73-88, Eurekah.com/Landes Bioscience, Georgetown, TX
23. Sherlin, L. D., and Perona, J. J. (2003) Structure 11, 591-603
24. Scaringe, S. A., Wincott, F. E., and Caruthers, M. H. (1998) J. Am. Chem. Soc. 120, 11820-11821
25. Scaringe, S. A. (2000) Methods Enzymol. 317, 3-18
26. Sherlin, L. D., Bullock, T. L., Nissan, T. A., Perona, J. J., Lariviere, F. J., Uhlenbeck, O. C., and Scaringe, S. A. (2001) RNA (N. Y.) 7, 1671-1678
27. Sherlin, L. D., Bullock, T. L., Newberry, K. J., Lipman, R. S. A., Hou, Y-M., Beijer, B., Sproat, B. S., and Perona, J. J. (2000) J. Mol. Biol. 299, 431-446
28. Perona, J. J., Swanson, R., Steitz, T. A., and Soll, D. (1988) J. Mol. Biol. 202, 121-126
29. Nissan, T. A., Oliphant, B., and Perona, J. J. (1999) RNA (N. Y.) 5, 434-445
30. Uter, N. T., Gruic-Sovulj, I., and Perona, J. J. (2005) J. Biol. Chem. 280, 23966-23977
31. Wolfson, A. D., and Uhlenbeck, O. C. (2002) Proc. Natl. Acad. Sci. U. S. A. 99, 5965-5970
32. Uter, N. T., and Perona, J. J. (2004) Proc. Natl. Acad. Sci. U. S. A. 101, 14396-14401
33. Collaborative Computational Project Number 4 (1994) Acta Crystallogr. Sect. D Biol. Crystallogr. 50, 760-763
34. Brunger, A. T., Adams, P. T., Clore, G. M., Delano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Acta Crystallogr. Sect. D Biol. Crystallogr. 54, 905-921
35. Perona, J. J., Rould, M. A., and Steitz, T. A. (1993) Biochemistry 32, 8758-8771
36. Fersht, A. R. (1975) Biochemistry 14, 5-12
37. Mulvey, R. S., and Fersht, A. R. (1977) Biochemistry 16, 4005-4013
38. Jakubowski, H. (1980) Biochemistry 19, 5078-5086
39. Jakubowski, H., and Goldman, E. (1992) Microbiol. Rev. 56, 412-429
40. Hopfield, J. J., Yamane, T., Yue, V., and Coutts, S. M. (1976) Proc. Natl. Acad. Sci. U. S. A. 73, 1164-1168
41. Dale, T., Sanderson, L. E., and Uhlenbeck, O. C. (2004) Biochemistry 43, 6159-6166
42. Agou, F., Quevillon, S., Kerjan, P., and Mirande, M. (1998) Biochemistry 37, 11309-11314
43. Lazard, M., Kerjan, P., Agou, F., and Mirande, M. (2000) J. Mol. Biol. 302, 991-1004
44. Fersht, A. R., Gangloff, J., and Dirheimer, G. (1978) Biochemistry 17, 3740-3746
45. Fersht, A. R., and Dingwall, C. (1979) Biochemistry 18, 2627-2631
46. Englisch-Peters, S., Conley, J., Plumbridge, J., Leptak, C., Söll, D., and Rogers, M. J. (1991) Biochimie (Paris) 73, 1501-1508
47. Hsieh, J., Andrews, A. J., and Fierke, C. A. (2004) Biopolymers 73, 79-89
48. Weinger, J. S., Parnell, K. M., Dorner, S., Green, R., and Strobel, S. A. (2004) Nat. Struct. Mol. Biol. 11, 1101-1106
49. Persson, T., Cuzic, S., and Hartmann, R. K. (2003) J. Biol. Chem. 278, 43394-43401
50. Kumar, R. K., and Yarus, M. (2001) Biochemistry 40, 6998-7004
51. Jakubowski, H., and Fersht, A. R. (1981) Nucleic Acids Res. 9, 3105-3117
52. Lincecum, T. L., Tukalo, M., Yaremchuk, A., Mursinna, R. S., Williams, A. M., Sproat, B. S., Van Den Eynde, W., Link, A., Van Calenbergh, S., Grotli, M., Martinis, S., and Cusack, S. (2003) Mol. Cell 11, 951-963
53. Bishop, A. C., Nomanbhoy, T. K., and Schimmel, P. R. (2002) Proc. Natl. Acad. Sci. U. S. A. 99, 585-590
54. Bishop, A. C., Beebe, K., and Schimmel, P. R. (2003) Proc. Natl. Acad. Sci. U. S. A. 100, 490-494