-
1
-
-
0030962189
-
Structural and functional considerations of the aminoacylation reaction
-
Arnez JG, Moras D (1997) Structural and functional considerations of the aminoacylation reaction. Trends Biochem Sci 22:211-216.
-
(1997)
Trends Biochem Sci
, vol.22
, pp. 211-216
-
-
Arnez, J.G.1
Moras, D.2
-
2
-
-
0033782994
-
Aminoacyl-tRNA synthesis
-
Ibba M, Soll D (2000) Aminoacyl-tRNA synthesis. Annu Rev Biochem 69:617-650.
-
(2000)
Annu Rev Biochem
, vol.69
, pp. 617-650
-
-
Ibba, M.1
Soll, D.2
-
3
-
-
0027165755
-
Structural basis for transfer RNA aminoacylation by Escherichia coli glutaminyl-tRNA synthetase
-
Perona JJ, Rould MA, Steitz TA (1993) Structural basis for transfer RNA aminoacylation by Escherichia coli glutaminyl-tRNA synthetase. Biochemistry 32:8758-8771.
-
(1993)
Biochemistry
, vol.32
, pp. 8758-8771
-
-
Perona, J.J.1
Rould, M.A.2
Steitz, T.A.3
-
4
-
-
0028084909
-
The active site of yeast aspartyl-tRNA synthetase: Structural and functional aspects of the aminoacylation reaction
-
Cavarelli J, et al. (1994) The active site of yeast aspartyl-tRNA synthetase: Structural and functional aspects of the aminoacylation reaction. EMBO J 13:327-337.
-
(1994)
EMBO J
, vol.13
, pp. 327-337
-
-
Cavarelli, J.1
-
5
-
-
14844357908
-
A substrate-assisted concerted mechanism for aminoacylation by a class II aminoacyl-tRNA synthetase
-
Guth E, Connolly SH, Bovee M, Francklyn CS (2005) A substrate-assisted concerted mechanism for aminoacylation by a class II aminoacyl-tRNA synthetase. Biochemistry 44:3785-3794.
-
(2005)
Biochemistry
, vol.44
, pp. 3785-3794
-
-
Guth, E.1
Connolly, S.H.2
Bovee, M.3
Francklyn, C.S.4
-
6
-
-
0033617335
-
Tyr complex enlightens its repressor activity and reveals an essential zinc ion in the active site
-
Tyr complex enlightens its repressor activity and reveals an essential zinc ion in the active site. Cell 97:371-381.
-
(1999)
Cell
, vol.97
, pp. 371-381
-
-
Sankaranarayanan, R.1
-
7
-
-
0033637662
-
Transfer RNA-mediated editing in threonyl-tRNA synthetase: The class II solution to the double discrimination problem
-
Dock-Bregeon A, et al. (2000) Transfer RNA-mediated editing in threonyl-tRNA synthetase: The class II solution to the double discrimination problem. Cell 103:877-884.
-
(2000)
Cell
, vol.103
, pp. 877-884
-
-
Dock-Bregeon, A.1
-
8
-
-
0034124849
-
Zinc ion-mediated amino acid discrimination by threonyl-tRNA synthetase
-
Sankaranarayanan R, et al. (2000) Zinc ion-mediated amino acid discrimination by threonyl-tRNA synthetase. Nat Struct Biol 7:461-465.
-
(2000)
Nat Struct Biol
, vol.7
, pp. 461-465
-
-
Sankaranarayanan, R.1
-
9
-
-
0038161128
-
Conformational movements and cooperativity upon amino acid, ATP, and tRNA binding in threonyl-tRNA synthetase
-
Torres-Larios A, et al. (2003) Conformational movements and cooperativity upon amino acid, ATP, and tRNA binding in threonyl-tRNA synthetase. J Mol Biol 331:201-211.
-
(2003)
J Mol Biol
, vol.331
, pp. 201-211
-
-
Torres-Larios, A.1
-
10
-
-
0346963227
-
Induced fit and kinetic mechanism of adenylation catalyzed by Escherichia coli threonyl-tRNA synthetase
-
Bovee ML, Pierce MA, Francklyn CS (2003) Induced fit and kinetic mechanism of adenylation catalyzed by Escherichia coli threonyl-tRNA synthetase. Biochemistry 42:15102-15113.
-
(2003)
Biochemistry
, vol.42
, pp. 15102-15113
-
-
Bovee, M.L.1
Pierce, M.A.2
Francklyn, C.S.3
-
11
-
-
34948876353
-
Mutations in residues involved in zinc binding in the catalytic site of Escherichia coli threonyl-tRNA synthetase confer a dominant lethal phenotype
-
Caillet J, et al. (2007) Mutations in residues involved in zinc binding in the catalytic site of Escherichia coli threonyl-tRNA synthetase confer a dominant lethal phenotype. J Bacteriol 189:6839-6848.
-
(2007)
J Bacteriol
, vol.189
, pp. 6839-6848
-
-
Caillet, J.1
-
12
-
-
33847023388
-
Kinetic discrimination of tRNA identity by the conserved motif 2 loop of a class II aminoacyl-tRNA synthetase
-
Guth E, Francklyn CS (2007) Kinetic discrimination of tRNA identity by the conserved motif 2 loop of a class II aminoacyl-tRNA synthetase. Mol Cell 25:531-542.
-
(2007)
Mol Cell
, vol.25
, pp. 531-542
-
-
Guth, E.1
Francklyn, C.S.2
-
13
-
-
0035903548
-
The structure of an AspRS-tRNA(Asp) complex reveals a tRNA-dependent control mechanism
-
Moulinier L, et al. (2001) The structure of an AspRS-tRNA(Asp) complex reveals a tRNA-dependent control mechanism. EMBO J 20:5290-5301.
-
(2001)
EMBO J
, vol.20
, pp. 5290-5301
-
-
Moulinier, L.1
-
14
-
-
0021100127
-
Loss of positional specificity in the aminoacylation of Escherichia coli tRNAGly
-
Ehrenfeld GM, Francis TA, Hecht SM (1983) Loss of positional specificity in the aminoacylation of Escherichia coli tRNAGly. J Biol Chem 258:11745-11750.
-
(1983)
J Biol Chem
, vol.258
, pp. 11745-11750
-
-
Ehrenfeld, G.M.1
Francis, T.A.2
Hecht, S.M.3
-
15
-
-
0021099383
-
Transfer RNA pyrophosphorolysis with CTP(ATP):tRNA nucleotidyltransferase: A direct route to tRNAs modified at the 3′ terminus
-
Francis TA, Ehrenfeld GM, Gregory MR, Hecht SM (1983) Transfer RNA pyrophosphorolysis with CTP(ATP):tRNA nucleotidyltransferase: A direct route to tRNAs modified at the 3′ terminus. J Biol Chem 258:4279-4284.
-
(1983)
J Biol Chem
, vol.258
, pp. 4279-4284
-
-
Francis, T.A.1
Ehrenfeld, G.M.2
Gregory, M.R.3
Hecht, S.M.4
-
16
-
-
0016744245
-
Site of aminoacylation of tRNAs from Escherichia coli with respect to the 2′- or 3′-hydroxyl group of the terminal adenosine
-
Sprinzl M, Cramer F (1975) Site of aminoacylation of tRNAs from Escherichia coli with respect to the 2′- or 3′-hydroxyl group of the terminal adenosine. Proc Natl Acad Sci USA 72:3049-3053.
-
(1975)
Proc Natl Acad Sci USA
, vol.72
, pp. 3049-3053
-
-
Sprinzl, M.1
Cramer, F.2
-
17
-
-
0017383941
-
On the stereochemistry of activation of phenylalanine by phenylalanyl-tRNA synthetase from baker's yeast
-
von der Haar F, Cramer F, Eckstein F, Stahl KW (1977) On the stereochemistry of activation of phenylalanine by phenylalanyl-tRNA synthetase from baker's yeast. Eur J Biochem 76:263-267.
-
(1977)
Eur J Biochem
, vol.76
, pp. 263-267
-
-
von der Haar, F.1
Cramer, F.2
Eckstein, F.3
Stahl, K.W.4
-
18
-
-
33646568156
-
Participation of the tRNA A76 hydroxyl groups throughout translation
-
Weinger JS, Strobel SA (2006) Participation of the tRNA A76 hydroxyl groups throughout translation. Biochemistry 45:5939-5948.
-
(2006)
Biochemistry
, vol.45
, pp. 5939-5948
-
-
Weinger, J.S.1
Strobel, S.A.2
-
19
-
-
11944264414
-
Ribonuclease revisited: Catalysis via the classical general acid-base mechanism or a triester-like mechanism
-
Herschlag D (1994) Ribonuclease revisited: Catalysis via the classical general acid-base mechanism or a triester-like mechanism. J Am Chem Soc 116:11631-11635.
-
(1994)
J Am Chem Soc
, vol.116
, pp. 11631-11635
-
-
Herschlag, D.1
-
20
-
-
0027949817
-
Value of general acid-base catalysis to ribonuclease A
-
Thompson JE, Raines RT (1994) Value of general acid-base catalysis to ribonuclease A. J Am Chem Soc 116:5467-5468.
-
(1994)
J Am Chem Soc
, vol.116
, pp. 5467-5468
-
-
Thompson, J.E.1
Raines, R.T.2
-
21
-
-
33646538128
-
Hydride transfer versus hydrogen radical transfer in thymidylate synthase
-
Hong B, et al. (2006) Hydride transfer versus hydrogen radical transfer in thymidylate synthase. J Am Chem Soc 128:5636-5637.
-
(2006)
J Am Chem Soc
, vol.128
, pp. 5636-5637
-
-
Hong, B.1
-
22
-
-
36349020969
-
Mechanism of proton transfer in the 3α-hydroxysteroid dehydrogenase/carbonyl reductase from Comamonas testosteroni
-
Chang YH, Chuang LY, Hwang CC (2007) Mechanism of proton transfer in the 3α-hydroxysteroid dehydrogenase/carbonyl reductase from Comamonas testosteroni. J Biol Chem 282:34306-34314.
-
(2007)
J Biol Chem
, vol.282
, pp. 34306-34314
-
-
Chang, Y.H.1
Chuang, L.Y.2
Hwang, C.C.3
-
23
-
-
0021093439
-
Involvement of histidine residues in the activity of horse liver alcohol dehydrogenase
-
Hennecke M, Plapp BV (1983) Involvement of histidine residues in the activity of horse liver alcohol dehydrogenase. Biochemistry 22:3721-3728.
-
(1983)
Biochemistry
, vol.22
, pp. 3721-3728
-
-
Hennecke, M.1
Plapp, B.V.2
-
24
-
-
1542743968
-
Participation of histidine-51 in catalysis by horse liver alcohol dehydrogenase
-
LeBrun LA, Park DH, Ramaswamy S, Plapp BV (2004) Participation of histidine-51 in catalysis by horse liver alcohol dehydrogenase. Biochemistry 43:3014-3026.
-
(2004)
Biochemistry
, vol.43
, pp. 3014-3026
-
-
LeBrun, L.A.1
Park, D.H.2
Ramaswamy, S.3
Plapp, B.V.4
-
26
-
-
0035917536
-
Crystal structure of a SIR2 homolog-NAD complex
-
Min J, Landry J, Sternglanz R, Xu RM (2001) Crystal structure of a SIR2 homolog-NAD complex. Cell 105:269-279.
-
(2001)
Cell
, vol.105
, pp. 269-279
-
-
Min, J.1
Landry, J.2
Sternglanz, R.3
Xu, R.M.4
-
27
-
-
0040286134
-
Determination of 2′-hydroxyl and phosphate groups important for aminoacylation of Escherichia coli tRNAAsp: A nucleotide analogue interference study
-
Vortler CS, et al. (1998) Determination of 2′-hydroxyl and phosphate groups important for aminoacylation of Escherichia coli tRNAAsp: A nucleotide analogue interference study. RNA 4:1444-1454.
-
(1998)
RNA
, vol.4
, pp. 1444-1454
-
-
Vortler, C.S.1
-
28
-
-
0034682612
-
Mapping contacts between Escherichia coli alanyl tRNA synthetase and 2′ hydroxyls using a complete tRNA molecule
-
Pleiss JA, Wolfson AD, Uhlenbeck OC (2000) Mapping contacts between Escherichia coli alanyl tRNA synthetase and 2′ hydroxyls using a complete tRNA molecule. Biochemistry 39:8250-8258.
-
(2000)
Biochemistry
, vol.39
, pp. 8250-8258
-
-
Pleiss, J.A.1
Wolfson, A.D.2
Uhlenbeck, O.C.3
-
29
-
-
0017180250
-
Hydrolytic action of aminoacyl-tRNA synthetases from baker's yeast: "Chemical proofreading" preventing acylation of tRNA(I1e) with misactivated valine
-
von der Haar F, Cramer F (1976) Hydrolytic action of aminoacyl-tRNA synthetases from baker's yeast: "Chemical proofreading" preventing acylation of tRNA(I1e) with misactivated valine. Biochemistry 15:4131-4138.
-
(1976)
Biochemistry
, vol.15
, pp. 4131-4138
-
-
von der Haar, F.1
Cramer, F.2
-
30
-
-
0037036357
-
Plasticity of recognition of the 3′ end of mischarged tRNA by class I aminoacyl-tRNA synthetases
-
Nordin BE, Schimmel P (2002) Plasticity of recognition of the 3′ end of mischarged tRNA by class I aminoacyl-tRNA synthetases. J Biol Chem 277:20510-20517.
-
(2002)
J Biol Chem
, vol.277
, pp. 20510-20517
-
-
Nordin, B.E.1
Schimmel, P.2
-
31
-
-
33846085054
-
Mechanism of tRNA-dependent editing in translational quality control
-
Ling J, Roy H, Ibba M (2007) Mechanism of tRNA-dependent editing in translational quality control. Proc Natl Acad Sci USA 104:72-77.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 72-77
-
-
Ling, J.1
Roy, H.2
Ibba, M.3
-
32
-
-
0027181643
-
Contributions of 2′-hydroxyl groups of the RNA substrate to binding and catalysis by the Tetrahymena ribozyme: An energetic picture of an active site composed of RNA
-
Herschlag D, Eckstein F, Cech TR (1993) Contributions of 2′-hydroxyl groups of the RNA substrate to binding and catalysis by the Tetrahymena ribozyme: An energetic picture of an active site composed of RNA. Biochemistry 32:8299-8311.
-
(1993)
Biochemistry
, vol.32
, pp. 8299-8311
-
-
Herschlag, D.1
Eckstein, F.2
Cech, T.R.3
-
33
-
-
7544220590
-
Substrate-assisted catalysis of peptide bond formation by the ribosome
-
Weinger JS, et al. (2004) Substrate-assisted catalysis of peptide bond formation by the ribosome. Nat Struct Mol Biol 11:1101-1106.
-
(2004)
Nat Struct Mol Biol
, vol.11
, pp. 1101-1106
-
-
Weinger, J.S.1
-
34
-
-
27644557445
-
Structural insights into the roles of water and the 2′-hydroxyl of the P site tRNA in the peptidyl transferase reaction
-
Schmeing TM, et al. (2005) Structural insights into the roles of water and the 2′-hydroxyl of the P site tRNA in the peptidyl transferase reaction. Mol Cell 20:437-448.
-
(2005)
Mol Cell
, vol.20
, pp. 437-448
-
-
Schmeing, T.M.1
-
36
-
-
33745048734
-
Analysis of predictions for the catalytic mechanism of ribosomal peptidyl transfer
-
Trobro S, Aqvist J (2006) Analysis of predictions for the catalytic mechanism of ribosomal peptidyl transfer. Biochemistry 45:7049-7056.
-
(2006)
Biochemistry
, vol.45
, pp. 7049-7056
-
-
Trobro, S.1
Aqvist, J.2
-
37
-
-
34247589630
-
The ribosomal peptidyl transferase
-
Beringer M, Rodnina MV (2007) The ribosomal peptidyl transferase. Mol Cell 26:311-321.
-
(2007)
Mol Cell
, vol.26
, pp. 311-321
-
-
Beringer, M.1
Rodnina, M.V.2
-
38
-
-
0033987612
-
Ribozyme-catalyzed tRNA aminoacylation
-
Lee N, et al. (2000) Ribozyme-catalyzed tRNA aminoacylation. Nat Struct Biol 7:28-33.
-
(2000)
Nat Struct Biol
, vol.7
, pp. 28-33
-
-
Lee, N.1
-
39
-
-
0017232521
-
Coenzymes as fossils of an earlier metabolic state
-
White HB, III (1976) Coenzymes as fossils of an earlier metabolic state. J Mol Evol 7:101-104.
-
(1976)
J Mol Evol
, vol.7
, pp. 101-104
-
-
White III, H.B.1
-
40
-
-
35648980939
-
Evidence that tRNA synthetase-directed proton transfer stops mistranslation
-
Waas WF, Schimmel P (2007) Evidence that tRNA synthetase-directed proton transfer stops mistranslation. Biochemistry 46:12062-12070.
-
(2007)
Biochemistry
, vol.46
, pp. 12062-12070
-
-
Waas, W.F.1
Schimmel, P.2
-
41
-
-
38649136232
-
-
Francklyn CS, First EA, Perona JJ, Hou Y-M (2008) Methods for kinetic and thermodynamic analysis of aminoacyl-tRNA synthetases. Methods 44:100-118.
-
Francklyn CS, First EA, Perona JJ, Hou Y-M (2008) Methods for kinetic and thermodynamic analysis of aminoacyl-tRNA synthetases. Methods 44:100-118.
-
-
-
|