-
1
-
-
37749004225
-
Protein therapeutics: a summary and pharmacological classification
-
Leader B., et al. Protein therapeutics: a summary and pharmacological classification. Nat. Rev. Drug Discov. 2008, 7:21-39.
-
(2008)
Nat. Rev. Drug Discov.
, vol.7
, pp. 21-39
-
-
Leader, B.1
-
2
-
-
70449723296
-
Discovery and development of biopharmaceuticals: current issues
-
Strohl W.R., Knight D.M. Discovery and development of biopharmaceuticals: current issues. Curr. Opin. Biotechnol. 2009, 20:668-672.
-
(2009)
Curr. Opin. Biotechnol.
, vol.20
, pp. 668-672
-
-
Strohl, W.R.1
Knight, D.M.2
-
3
-
-
70449375361
-
What's fueling the biotech engine-2008
-
Aggarwal S. What's fueling the biotech engine-2008. Nat. Biotechnol. 2009, 27:987-993.
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 987-993
-
-
Aggarwal, S.1
-
4
-
-
78651387929
-
Antibody-based therapeutics to watch in 2011
-
Reichert J.M. Antibody-based therapeutics to watch in 2011. MAbs 2011, 3:76-98.
-
(2011)
MAbs
, vol.3
, pp. 76-98
-
-
Reichert, J.M.1
-
5
-
-
27144511241
-
Engineering novel binding proteins from nonimmunoglobulin domains
-
Binz H.K., et al. Engineering novel binding proteins from nonimmunoglobulin domains. Nat. Biotechnol. 2005, 23:1257-1268.
-
(2005)
Nat. Biotechnol.
, vol.23
, pp. 1257-1268
-
-
Binz, H.K.1
-
6
-
-
67649872364
-
Engineered protein scaffolds as next-generation antibody therapeutics
-
Gebauer M., Skerra A. Engineered protein scaffolds as next-generation antibody therapeutics. Curr. Opin. Chem. Biol. 2009, 13:245-255.
-
(2009)
Curr. Opin. Chem. Biol.
, vol.13
, pp. 245-255
-
-
Gebauer, M.1
Skerra, A.2
-
7
-
-
38949210238
-
Solution NMR structure of a designed metalloprotein and complementary molecular dynamics refinement
-
Calhoun J.R., et al. Solution NMR structure of a designed metalloprotein and complementary molecular dynamics refinement. Structure 2008, 16:210-215.
-
(2008)
Structure
, vol.16
, pp. 210-215
-
-
Calhoun, J.R.1
-
8
-
-
58149476770
-
OptGraft: a computational procedure for transferring a binding site onto an existing protein scaffold
-
Fazelinia H., et al. OptGraft: a computational procedure for transferring a binding site onto an existing protein scaffold. Protein Sci. 2009, 18:180-195.
-
(2009)
Protein Sci.
, vol.18
, pp. 180-195
-
-
Fazelinia, H.1
-
9
-
-
77949854939
-
Computational design and elaboration of a de novo heterotetrameric alpha-helical protein that selectively binds an emissive abiological (porphinato)zinc chromophore
-
Fry H.C., et al. Computational design and elaboration of a de novo heterotetrameric alpha-helical protein that selectively binds an emissive abiological (porphinato)zinc chromophore. J. Am. Chem. Soc. 2010, 132:3997-4005.
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 3997-4005
-
-
Fry, H.C.1
-
10
-
-
77949327063
-
Computational design of second-site suppressor mutations at protein-protein interfaces
-
Sammond D.W., et al. Computational design of second-site suppressor mutations at protein-protein interfaces. Proteins 2010, 78:1055-1065.
-
(2010)
Proteins
, vol.78
, pp. 1055-1065
-
-
Sammond, D.W.1
-
11
-
-
34548383489
-
Design of multi-specificity in protein interfaces
-
Humphris E.L., Kortemme T. Design of multi-specificity in protein interfaces. PLoS Comput. Biol. 2007, 3:1591-1604.
-
(2007)
PLoS Comput. Biol.
, vol.3
, pp. 1591-1604
-
-
Humphris, E.L.1
Kortemme, T.2
-
12
-
-
65249171530
-
Design of protein-interaction specificity gives selective bZIP-binding peptides
-
Grigoryan G., et al. Design of protein-interaction specificity gives selective bZIP-binding peptides. Nature 2009, 458:859-864.
-
(2009)
Nature
, vol.458
, pp. 859-864
-
-
Grigoryan, G.1
-
13
-
-
58549091879
-
Computational design of calmodulin mutants with up to 900-fold increase in binding specificity
-
Yosef E., et al. Computational design of calmodulin mutants with up to 900-fold increase in binding specificity. J. Mol. Biol. 2009, 385:1470-1480.
-
(2009)
J. Mol. Biol.
, vol.385
, pp. 1470-1480
-
-
Yosef, E.1
-
14
-
-
77956532389
-
Computational reprogramming of homing endonuclease specificity at multiple adjacent base pairs
-
Ashworth J., et al. Computational reprogramming of homing endonuclease specificity at multiple adjacent base pairs. Nucleic Acids Res. 2010, 38:5601-5608.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 5601-5608
-
-
Ashworth, J.1
-
15
-
-
73549117481
-
An artificial di-iron oxo-protein with phenol oxidase activity
-
Faiella M., et al. An artificial di-iron oxo-protein with phenol oxidase activity. Nat. Chem. Biol. 2009, 5:882-884.
-
(2009)
Nat. Chem. Biol.
, vol.5
, pp. 882-884
-
-
Faiella, M.1
-
16
-
-
40449116114
-
De novo computational design of retro-aldol enzymes
-
Jiang L., et al. De novo computational design of retro-aldol enzymes. Science 2008, 319:1387-1391.
-
(2008)
Science
, vol.319
, pp. 1387-1391
-
-
Jiang, L.1
-
17
-
-
43449098518
-
Kemp elimination catalysts by computational enzyme design
-
Röthlisberger D., et al. Kemp elimination catalysts by computational enzyme design. Nature 2008, 453:190-195.
-
(2008)
Nature
, vol.453
, pp. 190-195
-
-
Röthlisberger, D.1
-
18
-
-
77954811495
-
Computational design of an enzyme catalyst for a stereoselective bimolecular Diels-Alder reaction
-
Siegel J.B., et al. Computational design of an enzyme catalyst for a stereoselective bimolecular Diels-Alder reaction. Science 2010, 329:309-313.
-
(2010)
Science
, vol.329
, pp. 309-313
-
-
Siegel, J.B.1
-
19
-
-
0036667731
-
Rotamer libraries in the 21st century
-
Dunbrack R. Rotamer libraries in the 21st century. Curr. Opin. Struct. Biol. 2002, 12:431-440.
-
(2002)
Curr. Opin. Struct. Biol.
, vol.12
, pp. 431-440
-
-
Dunbrack, R.1
-
20
-
-
0345306764
-
Design of a novel globular protein fold with atomic-level accuracy
-
Kuhlman B., et al. Design of a novel globular protein fold with atomic-level accuracy. Science 2003, 302:1364-1368.
-
(2003)
Science
, vol.302
, pp. 1364-1368
-
-
Kuhlman, B.1
-
21
-
-
0026589733
-
The dead-end elimination theorem and its use in protein side-chain positioning
-
Desmet J., et al. The dead-end elimination theorem and its use in protein side-chain positioning. Nature 1992, 356:539-542.
-
(1992)
Nature
, vol.356
, pp. 539-542
-
-
Desmet, J.1
-
22
-
-
5744249209
-
Equation of state calculation by fast computing machines
-
Metropolis N., et al. Equation of state calculation by fast computing machines. J. Chem. Phys. 1953, 21:1087-1092.
-
(1953)
J. Chem. Phys.
, vol.21
, pp. 1087-1092
-
-
Metropolis, N.1
-
23
-
-
26444479778
-
Optimization by simulated annealing
-
Kirkpatrick S., et al. Optimization by simulated annealing. Science 1983, 220:671-680.
-
(1983)
Science
, vol.220
, pp. 671-680
-
-
Kirkpatrick, S.1
-
24
-
-
33745614865
-
Dramatic performance enhancements for the FASTER optimization algorithm
-
Allen B.D., Mayo S.L. Dramatic performance enhancements for the FASTER optimization algorithm. J. Comput. Chem. 2006, 27:1071-1075.
-
(2006)
J. Comput. Chem.
, vol.27
, pp. 1071-1075
-
-
Allen, B.D.1
Mayo, S.L.2
-
25
-
-
0028858499
-
De novo design of the hydrophobic cores of proteins
-
Desjarlais J.R., Handel T.M. De novo design of the hydrophobic cores of proteins. Protein Sci. 1995, 4:2006-2018.
-
(1995)
Protein Sci.
, vol.4
, pp. 2006-2018
-
-
Desjarlais, J.R.1
Handel, T.M.2
-
26
-
-
0029869187
-
Mean-field minimization methods for biological macromolecules
-
Koehl P. Mean-field minimization methods for biological macromolecules. Curr. Opin. Struct. Biol. 1996, 6:222-226.
-
(1996)
Curr. Opin. Struct. Biol.
, vol.6
, pp. 222-226
-
-
Koehl, P.1
-
27
-
-
4444351490
-
Empirical force fields for biological macromolecules: overview and issues
-
Mackerell A.D. Empirical force fields for biological macromolecules: overview and issues. J. Comput. Chem. 2004, 25:1584-1604.
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1584-1604
-
-
Mackerell, A.D.1
-
28
-
-
0034641749
-
Native protein sequences are close to optimal for their structures
-
Kuhlman B., Baker D. Native protein sequences are close to optimal for their structures. Proc. Natl. Acad. Sci. U.S.A. 2000, 97:10383-10388.
-
(2000)
Proc. Natl. Acad. Sci. U.S.A.
, vol.97
, pp. 10383-10388
-
-
Kuhlman, B.1
Baker, D.2
-
29
-
-
33744906496
-
A new generation of statistical potentials for proteins
-
Dehouck Y., et al. A new generation of statistical potentials for proteins. Biophys. J. 2006, 90:4010-4017.
-
(2006)
Biophys. J.
, vol.90
, pp. 4010-4017
-
-
Dehouck, Y.1
-
30
-
-
0033135638
-
Effective energy function for proteins in solution
-
Lazaridis T., Karplus M. Effective energy function for proteins in solution. Proteins 1999, 35:133-152.
-
(1999)
Proteins
, vol.35
, pp. 133-152
-
-
Lazaridis, T.1
Karplus, M.2
-
31
-
-
34147169516
-
Potential energy functions for protein design
-
Boas F.E., Harbury P.B. Potential energy functions for protein design. Curr. Opin. Struct. Biol. 2007, 17:199-204.
-
(2007)
Curr. Opin. Struct. Biol.
, vol.17
, pp. 199-204
-
-
Boas, F.E.1
Harbury, P.B.2
-
32
-
-
51549107071
-
Computational redesign of the SHV-1 beta-lactamase/beta-lactamase inhibitor protein interface
-
Reynolds K.A., et al. Computational redesign of the SHV-1 beta-lactamase/beta-lactamase inhibitor protein interface. J. Mol. Biol. 2008, 382:1265-1275.
-
(2008)
J. Mol. Biol.
, vol.382
, pp. 1265-1275
-
-
Reynolds, K.A.1
-
33
-
-
44949229094
-
Design of protein-ligand binding based on the molecular-mechanics energy model
-
Boas F.E., Harbury P.B. Design of protein-ligand binding based on the molecular-mechanics energy model. J. Mol. Biol. 2008, 380:415-424.
-
(2008)
J. Mol. Biol.
, vol.380
, pp. 415-424
-
-
Boas, F.E.1
Harbury, P.B.2
-
34
-
-
0037666888
-
Implications of protein flexibility for drug discovery
-
Teague S.J. Implications of protein flexibility for drug discovery. Nat. Rev. Drug Discov. 2003, 2:527-541.
-
(2003)
Nat. Rev. Drug Discov.
, vol.2
, pp. 527-541
-
-
Teague, S.J.1
-
35
-
-
41949132916
-
Flexible ligand docking to multiple receptor conformations: a practical alternative
-
Totrov M., Abagyan R. Flexible ligand docking to multiple receptor conformations: a practical alternative. Curr. Opin. Struct. Biol. 2008, 18:178-184.
-
(2008)
Curr. Opin. Struct. Biol.
, vol.18
, pp. 178-184
-
-
Totrov, M.1
Abagyan, R.2
-
36
-
-
69549120472
-
Conformational selection or induced fit: a flux description of reaction mechanism
-
Hammes G.G., et al. Conformational selection or induced fit: a flux description of reaction mechanism. Proc. Natl. Acad. Sci. U.S.A. 2009, 106:13737-13741.
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 13737-13741
-
-
Hammes, G.G.1
-
37
-
-
34547121250
-
Modeling backbone flexibility to achieve sequence diversity: the design of novel alpha-helical ligands for Bcl-xL
-
Fu X., et al. Modeling backbone flexibility to achieve sequence diversity: the design of novel alpha-helical ligands for Bcl-xL. J. Mol. Biol. 2007, 371:1099-1117.
-
(2007)
J. Mol. Biol.
, vol.371
, pp. 1099-1117
-
-
Fu, X.1
-
38
-
-
78650566901
-
Experimental library screening demonstrates the successful application of computational protein design to large structural ensembles
-
Allen B.D., et al. Experimental library screening demonstrates the successful application of computational protein design to large structural ensembles. Proc. Natl. Acad. Sci. U.S.A. 2010, 107:19838-19843.
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 19838-19843
-
-
Allen, B.D.1
-
39
-
-
32044456003
-
The backrub motion: how protein backbone shrugs when a sidechain dances
-
Davis I.W., et al. The backrub motion: how protein backbone shrugs when a sidechain dances. Structure 2006, 14:265-274.
-
(2006)
Structure
, vol.14
, pp. 265-274
-
-
Davis, I.W.1
-
40
-
-
45649084560
-
Backrub-like backbone simulation recapitulates natural protein conformational variability and improves mutant side-chain prediction
-
Smith C.A., Kortemme T. Backrub-like backbone simulation recapitulates natural protein conformational variability and improves mutant side-chain prediction. J. Mol. Biol. 2008, 380:742-756.
-
(2008)
J. Mol. Biol.
, vol.380
, pp. 742-756
-
-
Smith, C.A.1
Kortemme, T.2
-
41
-
-
46249112114
-
Algorithm for backrub motions in protein design
-
Georgiev I., et al. Algorithm for backrub motions in protein design. Bioinformatics 2008, 24:i196-i204.
-
(2008)
Bioinformatics
, vol.24
-
-
Georgiev, I.1
-
42
-
-
45649083705
-
A simple model of backbone flexibility improves modeling of side-chain conformational variability
-
Friedland G.D., et al. A simple model of backbone flexibility improves modeling of side-chain conformational variability. J. Mol. Biol. 2008, 380:757-774.
-
(2008)
J. Mol. Biol.
, vol.380
, pp. 757-774
-
-
Friedland, G.D.1
-
43
-
-
67049155677
-
A correspondence between solution-state dynamics of an individual protein and the sequence and conformational diversity of its family
-
Friedland G.D., et al. A correspondence between solution-state dynamics of an individual protein and the sequence and conformational diversity of its family. PLoS Comput. Biol. 2009, 5:1-16.
-
(2009)
PLoS Comput. Biol.
, vol.5
, pp. 1-16
-
-
Friedland, G.D.1
-
44
-
-
67249107701
-
Alteration of enzyme specificity by computational loop remodeling and design
-
Murphy P.M., et al. Alteration of enzyme specificity by computational loop remodeling and design. Proc. Natl. Acad. Sci. U.S.A. 2009, 106:9215-9220.
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 9215-9220
-
-
Murphy, P.M.1
-
45
-
-
33750056673
-
ROSETTALIGAND: protein-small molecule docking with full side-chain flexibility
-
Meiler J., Baker D. ROSETTALIGAND: protein-small molecule docking with full side-chain flexibility. Proteins 2006, 65:538-548.
-
(2006)
Proteins
, vol.65
, pp. 538-548
-
-
Meiler, J.1
Baker, D.2
-
46
-
-
59849126340
-
Docking and scoring with alternative side-chain conformations
-
Hartmann C., et al. Docking and scoring with alternative side-chain conformations. Proteins 2009, 74:712-726.
-
(2009)
Proteins
, vol.74
, pp. 712-726
-
-
Hartmann, C.1
-
47
-
-
84871194822
-
Small molecule rotamers enable simultaneous optimization of small molecule and protein degrees of freedom in ROSETTALIGAND Docking
-
A. Beyer, M. Schroeder (Eds.)
-
Kaufmann K., et al. Small molecule rotamers enable simultaneous optimization of small molecule and protein degrees of freedom in ROSETTALIGAND Docking. German Conference on Bioinformatics 2008, 148-157. A. Beyer, M. Schroeder (Eds.).
-
(2008)
German Conference on Bioinformatics
, pp. 148-157
-
-
Kaufmann, K.1
-
48
-
-
48449094112
-
Conformer selection and induced fit in flexible backbone protein-protein docking using computational and NMR ensembles
-
Chaudhury S., Gray J.J. Conformer selection and induced fit in flexible backbone protein-protein docking using computational and NMR ensembles. J. Mol. Biol. 2008, 381:1068-1087.
-
(2008)
J. Mol. Biol.
, vol.381
, pp. 1068-1087
-
-
Chaudhury, S.1
Gray, J.J.2
-
49
-
-
79956080813
-
-
Computational design of an endo-1,4-β-xylanase ligand binding site. Protein Eng. Des. Sel. (in press)
-
Morin, A. et al. (2011) Computational design of an endo-1,4-β-xylanase ligand binding site. Protein Eng. Des. Sel. (in press).
-
(2011)
-
-
Morin, A.1
-
50
-
-
72749109072
-
Selecting sequences that fold into a defined 3D structure: A new approach for protein design based on molecular dynamics and energetics
-
Morra G., et al. Selecting sequences that fold into a defined 3D structure: A new approach for protein design based on molecular dynamics and energetics. Biophys. Chem. 2010, 146:76-84.
-
(2010)
Biophys. Chem.
, vol.146
, pp. 76-84
-
-
Morra, G.1
-
51
-
-
77952268732
-
Predicting interaction sites from the energetics of isolated proteins: a new approach to epitope mapping
-
Scarabelli G., et al. Predicting interaction sites from the energetics of isolated proteins: a new approach to epitope mapping. Biophys. J. 2010, 98:1966-1975.
-
(2010)
Biophys. J.
, vol.98
, pp. 1966-1975
-
-
Scarabelli, G.1
-
52
-
-
77956566842
-
Dynamics-based discovery of allosteric inhibitors: selection of new ligands for the C-terminal domain of Hsp90
-
Morra G., et al. Dynamics-based discovery of allosteric inhibitors: selection of new ligands for the C-terminal domain of Hsp90. J. Chem. Theory Comput. 2010, 6:2978-2989.
-
(2010)
J. Chem. Theory Comput.
, vol.6
, pp. 2978-2989
-
-
Morra, G.1
-
53
-
-
75849162018
-
Incorporating receptor flexibility in the molecular design of protein interfaces
-
Li L., et al. Incorporating receptor flexibility in the molecular design of protein interfaces. Protein Eng. Des. Sel. 2009, 22:575-586.
-
(2009)
Protein Eng. Des. Sel.
, vol.22
, pp. 575-586
-
-
Li, L.1
-
54
-
-
33749030723
-
Structural and dynamical properties of manganese catalase and the synthetic protein DF1 and their implication for reactivity from classical molecular dynamics calculations
-
Spiegel K., et al. Structural and dynamical properties of manganese catalase and the synthetic protein DF1 and their implication for reactivity from classical molecular dynamics calculations. Proteins 2006, 65:317-330.
-
(2006)
Proteins
, vol.65
, pp. 317-330
-
-
Spiegel, K.1
-
55
-
-
0029016182
-
Classical electrostatics in biology and chemistry
-
Honig B., Nicholls A. Classical electrostatics in biology and chemistry. Science 1995, 268:1144-1149.
-
(1995)
Science
, vol.268
, pp. 1144-1149
-
-
Honig, B.1
Nicholls, A.2
-
56
-
-
0033654297
-
Generalized born models of macromolecular solvation effects
-
Bashford D., Case D.A. Generalized born models of macromolecular solvation effects. Annu. Rev. Phys. Chem. 2000, 51:129-152.
-
(2000)
Annu. Rev. Phys. Chem.
, vol.51
, pp. 129-152
-
-
Bashford, D.1
Case, D.A.2
-
57
-
-
70349463121
-
Computational design of Candida boidinii xylose reductase for altered cofactor specificity
-
Khoury G.A., et al. Computational design of Candida boidinii xylose reductase for altered cofactor specificity. Protein Sci. 2009, 18:2125-2138.
-
(2009)
Protein Sci.
, vol.18
, pp. 2125-2138
-
-
Khoury, G.A.1
-
58
-
-
35148855712
-
Computational design of antibody-affinity improvement beyond in vivo maturation
-
Lippow S.M., et al. Computational design of antibody-affinity improvement beyond in vivo maturation. Nat. Biotechnol. 2007, 25:1171-1176.
-
(2007)
Nat. Biotechnol.
, vol.25
, pp. 1171-1176
-
-
Lippow, S.M.1
-
59
-
-
13944256616
-
A " solvated rotamer" approach to modeling water-mediated hydrogen bonds at protein-protein interfaces
-
Jiang L., et al. A " solvated rotamer" approach to modeling water-mediated hydrogen bonds at protein-protein interfaces. Proteins 2005, 58:893-904.
-
(2005)
Proteins
, vol.58
, pp. 893-904
-
-
Jiang, L.1
-
60
-
-
77950437360
-
Origins of catalysis by computationally designed retroaldolase enzymes
-
Lassila J.K., et al. Origins of catalysis by computationally designed retroaldolase enzymes. Proc. Natl. Acad. Sci. U.S.A. 2010, 107:4937-4942.
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 4937-4942
-
-
Lassila, J.K.1
-
61
-
-
0037217406
-
Automated design of specificity in molecular recognition
-
Havranek J.J., Harbury P.B. Automated design of specificity in molecular recognition. Nat. Struct. Biol. 2003, 10:45-52.
-
(2003)
Nat. Struct. Biol.
, vol.10
, pp. 45-52
-
-
Havranek, J.J.1
Harbury, P.B.2
-
62
-
-
24644472964
-
Specificity versus stability in computational protein design
-
Bolon D.N., et al. Specificity versus stability in computational protein design. Proc. Natl. Acad. Sci. U.S.A. 2005, 102:12724-12729.
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 12724-12729
-
-
Bolon, D.N.1
-
63
-
-
33745278855
-
Computational redesign of endonuclease DNA binding and cleavage specificity
-
Ashworth J., et al. Computational redesign of endonuclease DNA binding and cleavage specificity. Nature 2006, 441:656-659.
-
(2006)
Nature
, vol.441
, pp. 656-659
-
-
Ashworth, J.1
-
64
-
-
57049180165
-
Prediction of protein-protein interface sequence diversity using flexible backbone computational protein design
-
Humphris E.L., Kortemme T. Prediction of protein-protein interface sequence diversity using flexible backbone computational protein design. Structure 2008, 16:1777-1788.
-
(2008)
Structure
, vol.16
, pp. 1777-1788
-
-
Humphris, E.L.1
Kortemme, T.2
-
65
-
-
73249124179
-
Computational design of ligand binding is not a solved problem
-
Schreier B., et al. Computational design of ligand binding is not a solved problem. Proc. Natl. Acad. Sci. U.S.A. 2009, 106:18491-18496.
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 18491-18496
-
-
Schreier, B.1
-
66
-
-
33751525692
-
New algorithms and an in silico benchmark for computational enzyme design
-
Zanghellini A., et al. New algorithms and an in silico benchmark for computational enzyme design. Protein Sci. 2006, 15:2785-2794.
-
(2006)
Protein Sci.
, vol.15
, pp. 2785-2794
-
-
Zanghellini, A.1
-
67
-
-
78650543850
-
Generation of longer emission wavelength red fluorescent proteins using computationally designed libraries
-
Chica R.A., et al. Generation of longer emission wavelength red fluorescent proteins using computationally designed libraries. Proc. Natl. Acad. Sci. U.S.A. 2010, 107:20257-20262.
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 20257-20262
-
-
Chica, R.A.1
-
68
-
-
77954990456
-
Design and directed evolution of a dideoxy purine nucleoside phosphorylase
-
Nannemann D.P., et al. Design and directed evolution of a dideoxy purine nucleoside phosphorylase. Protein Eng. Des. Sel. 2010, 23:607-616.
-
(2010)
Protein Eng. Des. Sel.
, vol.23
, pp. 607-616
-
-
Nannemann, D.P.1
-
69
-
-
34548522063
-
Alternative non-antibody scaffolds for molecular recognition
-
Skerra A. Alternative non-antibody scaffolds for molecular recognition. Curr. Opin. Biotechnol. 2007, 18:295-304.
-
(2007)
Curr. Opin. Biotechnol.
, vol.18
, pp. 295-304
-
-
Skerra, A.1
-
70
-
-
62849116221
-
Engineered affinity proteins-generation and applications
-
Grönwall C., Ståhl S. Engineered affinity proteins-generation and applications. J. Biotechnol. 2009, 140:254-269.
-
(2009)
J. Biotechnol.
, vol.140
, pp. 254-269
-
-
Grönwall, C.1
Ståhl, S.2
-
71
-
-
12844276589
-
Lipocalins in drug discovery: from natural ligand-binding proteins to " anticalins"
-
Schlehuber S., Skerra A. Lipocalins in drug discovery: from natural ligand-binding proteins to " anticalins" Drug Discov. Today 2005, 10:23-33.
-
(2005)
Drug Discov. Today
, vol.10
, pp. 23-33
-
-
Schlehuber, S.1
Skerra, A.2
-
72
-
-
77951586447
-
Strategies and challenges for the next generation of therapeutic antibodies
-
Beck A., et al. Strategies and challenges for the next generation of therapeutic antibodies. Nat. Rev. Immunol. 2010, 10:345-352.
-
(2010)
Nat. Rev. Immunol.
, vol.10
, pp. 345-352
-
-
Beck, A.1
-
74
-
-
33846439351
-
Cocaine esterase: interactions with cocaine and immune responses in mice
-
Ko M.C., et al. Cocaine esterase: interactions with cocaine and immune responses in mice. J. Pharmacol. Exp. Ther. 2007, 320:926-933.
-
(2007)
J. Pharmacol. Exp. Ther.
, vol.320
, pp. 926-933
-
-
Ko, M.C.1
-
75
-
-
33751097261
-
Rapid and robust protection against cocaine-induced lethality in rats by the bacterial cocaine esterase
-
Cooper Z.D., et al. Rapid and robust protection against cocaine-induced lethality in rats by the bacterial cocaine esterase. Mol. Pharmacol. 2006, 70:1885-1891.
-
(2006)
Mol. Pharmacol.
, vol.70
, pp. 1885-1891
-
-
Cooper, Z.D.1
-
76
-
-
59449089478
-
Thermostable variants of cocaine esterase for long-time protection against cocaine toxicity
-
Gao D., et al. Thermostable variants of cocaine esterase for long-time protection against cocaine toxicity. Mol. Pharmacol. 2009, 75:318-323.
-
(2009)
Mol. Pharmacol.
, vol.75
, pp. 318-323
-
-
Gao, D.1
-
77
-
-
77955941601
-
Structural analysis of thermostabilizing mutations of cocaine esterase
-
Narasimhan D., et al. Structural analysis of thermostabilizing mutations of cocaine esterase. Protein Eng. Des. Sel. 2010, 23:537-547.
-
(2010)
Protein Eng. Des. Sel.
, vol.23
, pp. 537-547
-
-
Narasimhan, D.1
-
78
-
-
77950212804
-
A thermally stable form of bacterial cocaine esterase: a potential therapeutic agent for treatment of cocaine abuse
-
Brim R.L., et al. A thermally stable form of bacterial cocaine esterase: a potential therapeutic agent for treatment of cocaine abuse. Mol. Pharmacol. 2010, 77:593-600.
-
(2010)
Mol. Pharmacol.
, vol.77
, pp. 593-600
-
-
Brim, R.L.1
-
79
-
-
76749083724
-
PEGylation of bacterial cocaine esterase for protection against protease digestion and immunogenicity
-
Park J.B., et al. PEGylation of bacterial cocaine esterase for protection against protease digestion and immunogenicity. J. Control. Release 2010, 142:174-179.
-
(2010)
J. Control. Release
, vol.142
, pp. 174-179
-
-
Park, J.B.1
-
80
-
-
56749170877
-
Catalytic mechanism and performance of computationally designed enzymes for Kemp elimination
-
Alexandrova A.N., et al. Catalytic mechanism and performance of computationally designed enzymes for Kemp elimination. J. Am. Chem. Soc. 2008, 130:15907-15915.
-
(2008)
J. Am. Chem. Soc.
, vol.130
, pp. 15907-15915
-
-
Alexandrova, A.N.1
-
81
-
-
77649271939
-
Evolutionary optimization of computationally designed enzymes: Kemp eliminases of the KE07 series
-
Khersonsky O., et al. Evolutionary optimization of computationally designed enzymes: Kemp eliminases of the KE07 series. J. Mol. Biol. 2010, 396:1025-1042.
-
(2010)
J. Mol. Biol.
, vol.396
, pp. 1025-1042
-
-
Khersonsky, O.1
-
82
-
-
70349632843
-
The influence of protein dynamics on the success of computational enzyme design
-
Ruscio J.Z., et al. The influence of protein dynamics on the success of computational enzyme design. J. Am. Chem. Soc. 2009, 131:14111-14115.
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 14111-14115
-
-
Ruscio, J.Z.1
-
83
-
-
77950469105
-
De novo backbone scaffolds for protein design
-
MacDonald J.T., et al. De novo backbone scaffolds for protein design. Proteins 2010, 78:1311-1325.
-
(2010)
Proteins
, vol.78
, pp. 1311-1325
-
-
MacDonald, J.T.1
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